BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] (431 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] gi|254040027|gb|ACT56823.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 431/431 (100%), Positives = 431/431 (100%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD Sbjct: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII Sbjct: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL Sbjct: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF Sbjct: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ Sbjct: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT Sbjct: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII Sbjct: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Query: 421 PLPEDHPIDSD 431 PLPEDHPIDSD Sbjct: 421 PLPEDHPIDSD 431 >gi|150396039|ref|YP_001326506.1| peptidoglycan binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150027554|gb|ABR59671.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium medicae WSM419] Length = 443 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 204/404 (50%), Positives = 277/404 (68%), Gaps = 9/404 (2%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 L+EIIN +D+FD +R + S+ P+ ETIA ++AI YQ I + GGWP Sbjct: 37 LNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPETIALLQQAILDYQQIAAAGGWP 96 Query: 96 EL---PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + + L LG + +VQ+LR+RL+ISGDL S G+S +FD+YV+ AVK FQ RHGL Sbjct: 97 MVNPASTQRLELGVNDPAVQQLRQRLMISGDLPQSAGISPSFDSYVDGAVKRFQARHGLP 156 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ +L+A+NV R+ QL+ NL+R++ + +G RYV+VNIPAA +EAVENG+ Sbjct: 157 ADGVIGEYSLKALNVDASTRLAQLETNLVRLQS-MSGDLGRRYVMVNIPAAYIEAVENGR 215 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V LR T IVG++DRQ+PIL+S+I ++ NPYW PRSIIQKD+M L+R+DP YL+ N I Sbjct: 216 VALRHTAIVGKIDRQSPILNSKIYEVILNPYWTAPRSIIQKDIMPLMRKDPTYLERNAIR 275 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 ++D G EV E +DW + + PN +FRQDPGKINAM+STKI F++ + YMHDTP+ LF Sbjct: 276 LLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINAMSSTKINFHNEHAVYMHDTPQQGLF 335 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N ++RFE+SGCVRV+N+ DL WLLK+TP WSR IE +K+ TP+KLA EVPV+F Y Sbjct: 336 NKLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQIEGTIKSGVNTPIKLAEEVPVYFTY 395 Query: 393 ISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP-----EDHPIDSD 431 I+AWS KD ++QFRDDIY D + PID+D Sbjct: 396 ITAWSAKDRVVQFRDDIYQRDGAAELALQTTTGIEQSAGPIDAD 439 >gi|227821529|ref|YP_002825499.1| putative amidase [Sinorhizobium fredii NGR234] gi|227340528|gb|ACP24746.1| putative amidase [Sinorhizobium fredii NGR234] Length = 442 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 202/403 (50%), Positives = 277/403 (68%), Gaps = 8/403 (1%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 L E+IN +D+FD +R + S+ P+ +TI ++AI YQ I++ GGWP Sbjct: 37 LGELINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPQTIGHVQQAIFDYQQIVAAGGWP 96 Query: 96 ELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 ++P L LG + SVQ+LR+RL++SGDL S G+S +FD+YV+ AVK FQ RHGL Sbjct: 97 QVPQTGARLELGVTDPSVQQLRQRLMVSGDLPRSAGISSSFDSYVDGAVKRFQARHGLPA 156 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ + +A+NV R+ QL+ NL+R++ + +G RYV+VNIPAA +EAVENG+V Sbjct: 157 DGVIGEYSFKALNVDAATRLAQLETNLVRLQS-MSGDLGRRYVMVNIPAAYIEAVENGRV 215 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 LR T IVG++DRQ+PIL+S+I ++ NPYW PRSI+QKD+M L+R+DP YL+ N I + Sbjct: 216 VLRHTAIVGKIDRQSPILNSKIYEVILNPYWTAPRSIVQKDIMPLMRKDPTYLERNAIRL 275 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 +D G EV E VDWN+ + PN +FRQDPGKINAM+STKI F++ ++ YMHDTP+ LFN Sbjct: 276 LDGSGNEVSPETVDWNAEKAPNLMFRQDPGKINAMSSTKINFHNEHSVYMHDTPQQGLFN 335 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 ++RFE+SGCVRV+N+ DL WLLK+TP WSR IE +KT TP+KLA EVPV+F YI Sbjct: 336 KLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQIEATIKTGVNTPIKLAEEVPVYFTYI 395 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPLP-----EDHPIDSD 431 +AWS KD ++QFRDDIY D + ID+D Sbjct: 396 TAWSAKDRVVQFRDDIYQRDGAAELALQTTTGIEQSPGAIDAD 438 >gi|15964960|ref|NP_385313.1| hypothetical protein SMc01769 [Sinorhizobium meliloti 1021] gi|307301031|ref|ZP_07580800.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307317765|ref|ZP_07597203.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|15074139|emb|CAC45786.1| Hypothetical protein SMc01769 [Sinorhizobium meliloti 1021] gi|306896527|gb|EFN27275.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306903986|gb|EFN34572.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 443 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 205/404 (50%), Positives = 276/404 (68%), Gaps = 9/404 (2%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 L+EIIN +D+FD +R + S+ P+ ETIA ++AI YQ I S GGWP Sbjct: 37 LNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPETIAHLQQAIFDYQQIASAGGWP 96 Query: 96 EL---PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + + L +G + SVQ+LR+RL+ISGDL S G+S +FD+YV+ AVK FQ RHGL Sbjct: 97 MVTPASTQRLEIGVTDPSVQQLRQRLMISGDLPQSAGISSSFDSYVDGAVKRFQARHGLP 156 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ +L+AMNV R+ QL+ NL+R++ + +G RYV+VNIPAA +EAVENG+ Sbjct: 157 ADGVIGEYSLKAMNVDASTRLAQLETNLVRLQS-MSGDLGRRYVMVNIPAAYIEAVENGR 215 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V LR T IVG++DRQ+PIL+S+I ++ NPYW PRSIIQKD+M L+R+DP YL N I Sbjct: 216 VALRHTAIVGKIDRQSPILNSKIYEVILNPYWTAPRSIIQKDIMPLMRKDPTYLARNAIR 275 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 ++D G EV E +DW + + PN +FRQDPGKINAM+STKI F++ + YMHDTP+ LF Sbjct: 276 LLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINAMSSTKINFHNEHAVYMHDTPQQGLF 335 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N ++RFE+SGCVRV+N+ DL WLLK+TP W+R IE +K+ TP+KLA EVPV+F Y Sbjct: 336 NKLMRFESSGCVRVQNVRDLSTWLLKETPGWARQQIEATIKSGVNTPIKLAEEVPVYFTY 395 Query: 393 ISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP-----EDHPIDSD 431 I+AWS KD ++QFRDDIY D + PID+D Sbjct: 396 ITAWSAKDRVVQFRDDIYQRDGAAELALQTTTGIEQSAGPIDAD 439 >gi|110633486|ref|YP_673694.1| twin-arginine translocation pathway signal [Mesorhizobium sp. BNC1] gi|110284470|gb|ABG62529.1| Twin-arginine translocation pathway signal [Chelativorans sp. BNC1] Length = 419 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 182/380 (47%), Positives = 259/380 (68%), Gaps = 1/380 (0%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 D IIN + +D+FD ++ + S +P+++ +T E+AIA Y +I++ GGWP+ Sbjct: 31 DAIINAPRRGVWDDQFDAQISSGRDRVISYLPVLNPQTAVHVEQAIAGYSNIVASGGWPQ 90 Query: 97 LPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P + L LG V+ LR RL++SGDL P G+S AFD+YV+ A+K FQ+RHGL G Sbjct: 91 VPATKKLQLGVIDPDVEALRRRLMVSGDLSPRAGMSPAFDSYVDQALKRFQVRHGLPADG 150 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + T A+NV +R+ QLQ NL R++++ +++G R+V+VNIPAA +EAVENG+V Sbjct: 151 VTGRYTFSALNVSAPVRLGQLQTNLGRLREMTSKQLGNRFVMVNIPAAQIEAVENGRVVS 210 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 R T +VG++DRQTP+L S+IN I+ NPYW P SI++KD++ L+R+DP YL DNNI MI Sbjct: 211 RHTAVVGKIDRQTPVLSSKINEIILNPYWNAPVSIVRKDIIPLMRKDPNYLTDNNIRMIA 270 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G EV +DW++ E + FRQDPGKINAMAS KI F +++ YMHDTP+ LF + Sbjct: 271 PDGSEVDPLTIDWSTEEAAKYRFRQDPGKINAMASVKINFPNQHAVYMHDTPQQSLFRDQ 330 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 RF +SGCVRV+N+ DL WLL+DT W R IE +++++ + +A VPV+FVY+SA Sbjct: 331 ERFHSSGCVRVQNVRDLVAWLLRDTQGWDRRRIETTIQSQEDIHINVADPVPVYFVYVSA 390 Query: 396 WSPKDSIIQFRDDIYGLDNV 415 WS D ++ FRDDIYG D Sbjct: 391 WSTGDGVVHFRDDIYGFDGA 410 >gi|13476933|ref|NP_108502.1| hypothetical protein mlr8397 [Mesorhizobium loti MAFF303099] gi|14027695|dbj|BAB54288.1| mlr8397 [Mesorhizobium loti MAFF303099] Length = 422 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 189/397 (47%), Positives = 264/397 (66%), Gaps = 3/397 (0%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 L + + V+ +I+ S +D+FD + + S +PI S +T+A TE Sbjct: 19 LLAAAMVAGRASAQDVIGDILKSSARGNWDDQFDARASEGGK-VASTLPIFSTQTVAFTE 77 Query: 80 KAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 +A+A YQ+I+ +GGW E+P + L LG V LR+RL++SGDL S G+S AFD+YV Sbjct: 78 QAVAQYQNIVGQGGWVEVPATKKLELGVDDPDVVPLRKRLMVSGDLSQSAGISTAFDSYV 137 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 +SAVK FQ+RHGL G + T AMNV +R+ QLQ NL R+K+ +G RYVLV Sbjct: 138 DSAVKRFQLRHGLPADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLKEK-AGTLGSRYVLV 196 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 +IPAA +EAVEN +V LR T IVG++DRQTPI++S+IN I+ NPYW P SI++KD++ L Sbjct: 197 DIPAAQIEAVENDRVVLRHTAIVGKIDRQTPIVNSKINEIIVNPYWNAPVSIVRKDIIPL 256 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 +R+DP YLK+++I + G EV VDW++ + + FRQDPG NAMAS KI F S Sbjct: 257 MRKDPNYLKNSHIRLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMASVKINFPSP 316 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + YMHDTP+ LF ++RF++SGCVRV+N+ DL W+L+DTP W R H E +KT + T Sbjct: 317 DGVYMHDTPQQSLFGKMMRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFEAAIKTGQNT 376 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 P+++ VPVHF+Y+SAWS ++QFRDD+Y LD Sbjct: 377 PIQVTNPVPVHFLYLSAWSTGPGVVQFRDDVYALDGA 413 >gi|209548779|ref|YP_002280696.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534535|gb|ACI54470.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 433 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 196/392 (50%), Positives = 271/392 (69%), Gaps = 5/392 (1%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQTEKAIAF 84 + S +D +IN +D+FD +R + S+ PI+ +++A ++A+ Sbjct: 27 IAAPAFAQSAIDTLINAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSLASAQQAVMQ 86 Query: 85 YQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 YQ I + GGWPE+ L LG S +VQ LR+RL I+GDL G+S AFD+YV+ AV Sbjct: 87 YQQIAAAGGWPEVNPGDQKLQLGVSHPAVQALRQRLAITGDLPREAGMSSAFDSYVDGAV 146 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ RHGL G++ TL+AMN+P D+R++QL N++R++ + +G R+V+VNIPA Sbjct: 147 KRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQLNTNIIRLQTFP-EDLGRRHVMVNIPA 205 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 A +EAVE+G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+D Sbjct: 206 AYVEAVEDGTVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTSPRSIVEKDIMPLMRKD 265 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 P YL+ N I +ID KG EV E +DWN E PN +FRQDPGK NAMASTKI FY++N Y Sbjct: 266 PTYLEKNAIRLIDGKGNEVAPETIDWNG-EAPNLMFRQDPGKTNAMASTKINFYNKNGEY 324 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 MHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL++TP W+R +E+V+ + TPVKL Sbjct: 325 MHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQMEQVIASGVNTPVKL 384 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ATEVPV+FVYISAW D I+QFRDDIY +D Sbjct: 385 ATEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|222148202|ref|YP_002549159.1| hypothetical protein Avi_1609 [Agrobacterium vitis S4] gi|221735190|gb|ACM36153.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 410 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 194/385 (50%), Positives = 273/385 (70%), Gaps = 2/385 (0%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 + S +DE+IN +D+FD +R + S+ P++S + + AI+ YQ I++ Sbjct: 1 MAQSAVDELINARSRGNWDDQFDAQTSRAVASVTSNSPMLSATNLPNLQLAISAYQQIVA 60 Query: 91 RGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 +GGWP++ P L LG+ VQ+LR+RL+ISGDL G+S +FD YV+ AVK FQ RH Sbjct: 61 QGGWPQVNPSVKLKLGSIDPVVQQLRQRLMISGDLGQEAGMSNSFDTYVDGAVKRFQARH 120 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G + TL+AMN+ D+R+ QL NL+R++ + +G RYV+VNIP+ S+EAVE Sbjct: 121 GLPTDGALGEYTLKAMNISADVRLNQLNTNLVRLQ-AMSGDLGNRYVMVNIPSMSIEAVE 179 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 N +V LR+ +VGR+DR T ++S+I ++ NPYW PRSI++KD++ L+R+DP YL N Sbjct: 180 NDRVALRTNAVVGRIDRPTHSINSKIYEVILNPYWTAPRSIVEKDIVPLMRKDPTYLTRN 239 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 NI + D KG+EV E VDWN+P+ PN +FRQDPGKINAMASTKI F++ NN Y+HDTP+ Sbjct: 240 NIRLFDGKGQEVAPETVDWNAPKAPNLMFRQDPGKINAMASTKINFHNPNNEYLHDTPQQ 299 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGC+RV+N+ DL WLL+DTP W+R IE V+ TR+ +KL+ EVPV+ Sbjct: 300 GLFNKLMRFESSGCMRVQNVRDLITWLLRDTPGWNRQEIERVISTRQNNVIKLSQEVPVY 359 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 VYI+AWS KD+++QFRDDIY D Sbjct: 360 IVYITAWSAKDNVVQFRDDIYKRDG 384 >gi|86357145|ref|YP_469037.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CFN 42] gi|86281247|gb|ABC90310.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CFN 42] Length = 433 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 200/385 (51%), Positives = 271/385 (70%), Gaps = 5/385 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD +IN +D+FD +R + S+ PI+ +++A ++AI YQ I + Sbjct: 34 QSALDTLINAPRRGNWDDQFDAKAASRTATAVVSNTPILGPQSVASAQQAIMQYQQIAAA 93 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG SS +VQ LR+RL I+GDL G+S AFD+YV+ AVK FQ RH Sbjct: 94 GGWPEVNPGDQRLQLGVSSPAVQVLRQRLAITGDLPREAGMSNAFDSYVDGAVKRFQARH 153 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL NL+R++ + +G R+++VNIPAA +EAVE Sbjct: 154 GLPSDGVLGEFTLKAMNIPADVRLQQLNTNLVRLQTFP-EDLGRRHLMVNIPAAYVEAVE 212 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 213 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKN 272 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 I +ID KG EV E +DWN E PN FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 273 AIRLIDGKGNEVSPETIDWNG-EAPNLQFRQDPGKINAMASTKINFYNKNGEYMHDTPQQ 331 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ + TP+KLATEVPV+ Sbjct: 332 GLFNKLMRFESSGCVRVQNVRDLSTWLLRETPGWSRQQMEQVIASGVNTPIKLATEVPVY 391 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 FVYISAW D I+QFRDDIY +D Sbjct: 392 FVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|190891191|ref|YP_001977733.1| peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CIAT 652] gi|190696470|gb|ACE90555.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CIAT 652] gi|327192107|gb|EGE59084.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CNPAF512] Length = 434 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 201/385 (52%), Positives = 270/385 (70%), Gaps = 5/385 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD ++N +D+FD +R + S+ PI+ +++A ++AI YQ I + Sbjct: 35 QSALDGLLNAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSVASAQQAIMQYQQIAAA 94 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG S +VQ LR+RL I+GDL G+S AFD+YV+ AVK FQ RH Sbjct: 95 GGWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGMSSAFDSYVDGAVKRFQARH 154 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL NL+R++ + +G R+V+VNIPAA +EAVE Sbjct: 155 GLPSDGVLGEFTLKAMNIPADVRLQQLNTNLVRLQTFP-EDLGRRHVMVNIPAAYVEAVE 213 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 214 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKN 273 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 I +ID KG EV E VDWN E PN FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 274 AIRLIDGKGNEVAPETVDWNG-EAPNLQFRQDPGKINAMASTKINFYNKNGEYMHDTPQQ 332 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ T TP+KLATEVPV+ Sbjct: 333 GLFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQMEQVIATGVNTPIKLATEVPVY 392 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 FVYISAW D I+QFRDDIY +D Sbjct: 393 FVYISAWGMPDGIVQFRDDIYQMDG 417 >gi|241204000|ref|YP_002975096.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857890|gb|ACS55557.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 433 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 199/385 (51%), Positives = 271/385 (70%), Gaps = 5/385 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD +IN +D+FD +R + S+ PI+ +++A ++AI YQ I + Sbjct: 34 QSALDTLINAPRRGNWDDQFDAKAASRTATAMVSNTPILGPQSVASAQQAIMQYQQIAAA 93 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG SS +VQ LR+RL I+GDL GLS AFD+YV+ AVK FQ RH Sbjct: 94 GGWPEVNPGDQRLQLGVSSPAVQALRQRLAITGDLPREAGLSNAFDSYVDGAVKRFQARH 153 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL N++R++ + +G R+++VNIPAA +EAVE Sbjct: 154 GLPADGVLGEFTLKAMNIPADVRLQQLNTNVVRLQTFP-EDLGRRHLMVNIPAAYVEAVE 212 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 213 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKN 272 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 I ++D KG EV E +DWN E PN +FRQDPGK NAMASTKI FY++N YMHDTP+ Sbjct: 273 AIRLLDGKGNEVAPETIDWNG-EAPNLMFRQDPGKTNAMASTKINFYNKNGEYMHDTPQQ 331 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGCVRV+N+ DL WLL++TP W+R +E+V+ T TPVKLATEVPV+ Sbjct: 332 GLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQMEQVIATGVNTPVKLATEVPVY 391 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 FVYISAW D I+QFRDDIY +D Sbjct: 392 FVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|239831589|ref|ZP_04679918.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823856|gb|EEQ95424.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 438 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 193/400 (48%), Positives = 267/400 (66%), Gaps = 3/400 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I +D+FD A + ++ P++S +T+ + AI Sbjct: 36 ASAMVSSAYAQQVLTDVIAAPRRGNWDDQFDAR-ATGGQRVATNQPVLSPQTVGNLQTAI 94 Query: 83 AFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y DI RGGWP +P L +G + +VQ LR+RL+ISGDL GLS +FD YV++A Sbjct: 95 AQYTDIAGRGGWPSVPGNAKLQIGVTDPAVQALRKRLMISGDLPQEAGLSSSFDTYVDAA 154 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNI 200 VK FQ RHGL G++ T AMNV + R+ QLQ NL R+ L +Q R+V+VNI Sbjct: 155 VKRFQSRHGLPADGVMGQFTYAAMNVDANTRLGQLQTNLQRLSPLADQGMQEQRFVMVNI 214 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTPIL+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 215 PAARIEAVEGGSVVQRHTAVVGKIDRQTPILNSKIHEVILNPYWTAPKSIIQKDIIPLMR 274 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++++ Sbjct: 275 KDPQYLAKNKIRLYDQSGQEVAPETVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNQHQ 334 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R IE +K+ TP+ Sbjct: 335 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTAGWDRQTIENTIKSGTNTPI 394 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++A VP+HFVYISAWS D ++QFRDDIY +D + Sbjct: 395 QVADPVPLHFVYISAWSTGDGVVQFRDDIYKMDGATALAL 434 >gi|153009858|ref|YP_001371073.1| peptidoglycan-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561746|gb|ABS15244.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi ATCC 49188] Length = 433 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 193/400 (48%), Positives = 267/400 (66%), Gaps = 3/400 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V L ++I+ S D+FD A + ++ P++S +T+ + AI Sbjct: 31 ASAMVSSAYAQQALTDVISSSRRGNWADQFDAR-ATGGQRVATNQPVLSPQTVGNLQTAI 89 Query: 83 AFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y DI RGGWP +P L +G + SVQ LR+RL+ISGDL GLS +FD YV++A Sbjct: 90 AQYTDIAGRGGWPSVPGNTKLQIGVTDPSVQALRKRLMISGDLPQEAGLSSSFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 VK FQ RHGL G++ T AMNV + R+ QLQ NL R+ L Q + R+V+VNI Sbjct: 150 VKRFQSRHGLPADGVMGQFTYAAMNVDANTRLGQLQTNLQRLSPLANQGLQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTPIL+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVMQRHTAVVGKIDRQTPILNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E +DWN+ + +FRQDPGKINAM+STKI F+++ Sbjct: 270 KDPQYLAKNKIRLYDQSGQEVAPESIDWNTDDAVKLMFRQDPGKINAMSSTKINFHNQYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTAGWDRQNIESTIKSGTNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +LA VP+HFVYI+AWS D ++QFRDDIY +D + Sbjct: 390 QLADPVPLHFVYITAWSTGDGVVQFRDDIYKMDGATELAL 429 >gi|260466848|ref|ZP_05813032.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259029350|gb|EEW30642.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 417 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 187/388 (48%), Positives = 262/388 (67%), Gaps = 3/388 (0%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + V+ +I+ S +D+FD + + S +PI S +T+A TE+A+A YQ+ Sbjct: 22 GRASAQDVIGDILKSSARGNWDDQFDARASEGGK-VASTLPIFSPQTVAFTEQAVAQYQN 80 Query: 88 ILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I+ +GGW ++P + L LG V LR+RL+I+GDL S G+S AFD+YV+SAVK FQ Sbjct: 81 IVGQGGWVDVPATKKLELGVDDPDVVPLRKRLMIAGDLSQSAGISTAFDSYVDSAVKRFQ 140 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 +RHGL G + T AMNV +R+ QLQ NL R+K+ +G RYVLV+IPAA +E Sbjct: 141 LRHGLPADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLKEK-AGTLGSRYVLVDIPAAQIE 199 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 AVEN +V LR T IVG++DRQTPI++S+IN I+ NPYW P SI++KD++ L+R+DP YL Sbjct: 200 AVENDRVVLRHTAIVGKIDRQTPIVNSKINEIIVNPYWNAPVSIVRKDIIPLMRKDPDYL 259 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 K+++I + G EV VDW++ + + FRQDPG NAMAS KI F S + YMHDT Sbjct: 260 KNSHIRLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMASVKINFPSPDGVYMHDT 319 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P+ LF ++RF++SGCVRV+N+ DL W+L+DTP W R H E +KT + TP+++ V Sbjct: 320 PQQSLFGKMMRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFEAAIKTGQNTPIQVTNPV 379 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDN 414 PVHF+Y+SAWS ++QFRDD+Y LD Sbjct: 380 PVHFLYLSAWSTGPGVVQFRDDVYALDG 407 >gi|116251385|ref|YP_767223.1| hypothetical protein RL1618A [Rhizobium leguminosarum bv. viciae 3841] gi|115256033|emb|CAK07114.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 433 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 201/385 (52%), Positives = 271/385 (70%), Gaps = 5/385 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD +IN +D+FD +R + S+ PI+ +++A ++AI YQ I + Sbjct: 34 QSALDTLINAPRRGNWDDQFDAKAASRTATAMVSNTPILGPQSVASAQQAIMQYQQIAAA 93 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG SS SVQ LR+RL I+GDL GLS AFD+YV+ AVK FQ RH Sbjct: 94 GGWPEVNPGDQRLQLGVSSPSVQALRQRLAITGDLPREAGLSNAFDSYVDGAVKRFQARH 153 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL N++R++ + +G R+++VNIPAA +EAVE Sbjct: 154 GLPADGVLGEFTLKAMNIPADVRLQQLNTNVVRLQTFP-EDLGRRHLMVNIPAAYVEAVE 212 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 213 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKN 272 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 I ++D KG EV E VDWN E PN +FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 273 AIRLLDGKGNEVAPETVDWNG-EAPNLMFRQDPGKINAMASTKINFYNKNGEYMHDTPQQ 331 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ T TP+KLA EVPV+ Sbjct: 332 GLFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQMEQVIATGVNTPIKLAAEVPVY 391 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 FVYISAW D I+QFRDDIY +D Sbjct: 392 FVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|90419407|ref|ZP_01227317.1| putative peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90336344|gb|EAS50085.1| putative peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 447 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 188/403 (46%), Positives = 259/403 (64%), Gaps = 2/403 (0%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 F + L + L E++ +D+FD + V + S+ P+ S+ Sbjct: 18 FVLGTAAASAAMLPGAAFAQNALGELLQAPTRGNWDDQFDTRGSNVRQ-VASNSPVFSEN 76 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 TI ++AI Y I+ GGWP +P L +G S +V LR+RL I+GDL + G S Sbjct: 77 TIYSLQEAINSYSAIVQGGGWPMVPEGETLKIGVQSRTVPVLRQRLAIAGDLGNNAGGSP 136 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 AFD YV++AVK FQ RHGL G+V T +AMNV DLR+ QLQ NL R+++ L +G Sbjct: 137 AFDTYVDAAVKRFQARHGLPADGVVSGHTYKAMNVGADLRLGQLQTNLQRLREKLATDLG 196 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VNIPAAS+EAVENG+V R T +VG+VDRQTPIL SRI + NPYW P SI++ Sbjct: 197 QRYVVVNIPAASIEAVENGRVVQRHTAVVGKVDRQTPILDSRITNLNLNPYWHAPVSIVR 256 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 KD++ L+++DP YL+ N I + D G+E+ + +DWN+ E ++FRQDPGKINAMAS K Sbjct: 257 KDIIPLMQKDPTYLERNAIRIFDGNGQEIPPQTIDWNTEEAVKYLFRQDPGKINAMASVK 316 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 I F + + YMHDTP+ LF+ ++RFE+SGCVRV+N+ DL VWL +D P W R IE+V+ Sbjct: 317 INFPNPHAVYMHDTPQQSLFSELMRFESSGCVRVQNVRDLIVWLARDVPGWDRQRIEQVI 376 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 R+ + L VPVHF Y++AW+ +++QFRDDIY D V Sbjct: 377 AARERQDIDLLNPVPVHFTYVTAWATDPTVVQFRDDIYHRDGV 419 >gi|319784167|ref|YP_004143643.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170055|gb|ADV13593.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 417 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 184/384 (47%), Positives = 259/384 (67%), Gaps = 3/384 (0%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 V+ +I+ S +D+FD + + S +PI S +T+A TE+A+ YQ+I+ + Sbjct: 26 AQDVIGDILKSSARGNWDDQFDARASEGGK-VASTLPIFSPQTVAFTEQAVGQYQNIVGQ 84 Query: 92 GGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GGW E+P + L LG V LR+RL++SGDL S G+S AFD+YV+SAVK FQ+RHG Sbjct: 85 GGWVEVPATKKLQLGVDDPDVVPLRKRLMVSGDLSQSAGISTAFDSYVDSAVKRFQLRHG 144 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G + T AMNV +R+ QLQ NL R+++ +G RYVLV+IPAA +EAVEN Sbjct: 145 LPADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLREK-AGTLGSRYVLVDIPAAQVEAVEN 203 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 +V LR T IVG++DRQTPI++S+I I+ NPYW P SI++KD++ L+R++P YLK+++ Sbjct: 204 DRVVLRHTAIVGKIDRQTPIVNSKITEIIVNPYWNAPVSIVRKDIIPLMRKNPDYLKNSH 263 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 I + G EV VDW++ + + FRQDPG NAMAS KI F S + YMHDTP+ Sbjct: 264 IRLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMASVKINFPSPDGVYMHDTPQQS 323 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF ++RF++SGCVRV+N+ DL W+L+DTP W R H E +KT + TP+++ VPVHF Sbjct: 324 LFGKMLRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFEAAIKTGENTPIQVTNPVPVHF 383 Query: 391 VYISAWSPKDSIIQFRDDIYGLDN 414 +Y+SAWS ++QFRDD+Y LD Sbjct: 384 LYLSAWSTGPGVVQFRDDVYALDG 407 >gi|114704835|ref|ZP_01437743.1| hypothetical protein FP2506_07861 [Fulvimarina pelagi HTCC2506] gi|114539620|gb|EAU42740.1| hypothetical protein FP2506_07861 [Fulvimarina pelagi HTCC2506] Length = 444 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 182/396 (45%), Positives = 259/396 (65%), Gaps = 2/396 (0%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 +GL + S LD ++ +D+FD + + S PI S++T+ T+ Sbjct: 23 ALGLGMTGFASAQSGLDGLLGARGRGNWDDQFDTRGSSARE-VSSLNPIFSQQTLYSTQA 81 Query: 81 AIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 A+ Y I+++GGWP +P R L LG + V+ LR+RL ISGDL P S AFD YVE Sbjct: 82 AMQTYNQIVAQGGWPTVPARYVLKLGEVTPDVEVLRQRLAISGDLSPQASRSPAFDTYVE 141 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +AVK FQ RHGL G+V +A+NVP DLR+ QLQ N R++ L++++ RYV+VN Sbjct: 142 AAVKRFQARHGLPADGVVGEHAYKALNVPADLRLFQLQTNAARLQNQLQEQLPYRYVMVN 201 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IPAA++EAVENG++ R T +VG+VDRQTPIL S+I + NPYW P SI++KD++ L+ Sbjct: 202 IPAAAIEAVENGQIVQRHTAVVGKVDRQTPILTSKITNLNLNPYWHAPASIVRKDIIPLV 261 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 RQDP YL+ N IH+ + G+EV + +DW+S E +++FRQ+PG +AMAS KI F + + Sbjct: 262 RQDPTYLQRNGIHIFNGNGQEVPPQSIDWSSDEAVSYLFRQNPGPNSAMASVKINFPNEH 321 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 YMHDTP+ LF+ ++RFE+SGCVRV+N+ DL VWL +D P W+R IE V+ R Sbjct: 322 AVYMHDTPQKGLFSELMRFESSGCVRVQNVRDLIVWLARDEPNWNRQAIERVISARSRED 381 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + LA VPV+F Y++ W+ +++QFRDDIY D Sbjct: 382 IDLANPVPVYFTYVTGWATDPNVVQFRDDIYHRDGA 417 >gi|315122226|ref|YP_004062715.1| hypothetical protein CKC_02390 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495628|gb|ADR52227.1| hypothetical protein CKC_02390 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 431 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 296/430 (68%), Positives = 360/430 (83%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 M+ YLKI +++ FF YLIL MGL LV+ P+ A +LDEI ESYH+ V++RFD L+R D Sbjct: 1 MISYLKIINVVHRFFTYLILLMGLFLVKYPVRADILDEITKESYHANVDNRFDTLLSRPD 60 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 +GIDS I+S ETI TEKAI FYQDI+SRGGW +L RPL LG+SSV VQ+LRERLII Sbjct: 61 IGIDSYAAIVSNETITNTEKAIVFYQDIVSRGGWQQLANRPLRLGDSSVLVQKLRERLII 120 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 SGDLD SKG S FD+YVESAVK FQ RHGL P G+VD +TL+A+NVP DLR+RQL+VNL Sbjct: 121 SGDLDSSKGFSSVFDSYVESAVKFFQARHGLFPDGVVDIATLKAINVPADLRLRQLRVNL 180 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +RI LL++KMG RYVL+NIP+AS+EAVEN KV LRS IVGR+DRQTPILHS+I+RIM Sbjct: 181 LRISNLLKRKMGSRYVLINIPSASMEAVENDKVALRSVAIVGRIDRQTPILHSKIDRIML 240 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NPYWVIPRSII+KD++ L+R+ P+YLK++NIH+I++KGKEV E+VDWNS + P+FIFRQ Sbjct: 241 NPYWVIPRSIIKKDLVELVRESPEYLKESNIHIINDKGKEVLPEDVDWNSADLPHFIFRQ 300 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 D GK NAMASTKIEFYS+NN+YMHDTPEP LF+ RFETSGCVRV+NIIDL+VWLLK+ Sbjct: 301 DSGKNNAMASTKIEFYSQNNSYMHDTPEPFLFSQTARFETSGCVRVKNIIDLNVWLLKNM 360 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 P WSR+ IEEV+KTRKTTPVKL EV +HFVYISAWS KD ++QFRDD+YGLDNV++ I Sbjct: 361 PGWSRHDIEEVIKTRKTTPVKLDKEVLIHFVYISAWSTKDLVVQFRDDVYGLDNVYIDSI 420 Query: 421 PLPEDHPIDS 430 PLP +P++S Sbjct: 421 PLPGKYPVNS 430 >gi|260563801|ref|ZP_05834287.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|260153817|gb|EEW88909.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] Length = 433 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 195/391 (49%), Positives = 267/391 (68%), Gaps = 3/391 (0%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 +V VL ++I+ +D+FD A + ++ P++S +T+A + AI Y Sbjct: 34 MVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAIVQY 92 Query: 86 QDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A+K Sbjct: 93 TDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAALKR 152 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNIPAA 203 FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNIPAA Sbjct: 153 FQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIPAA 212 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R+DP Sbjct: 213 RIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMRKDP 272 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ YM Sbjct: 273 EYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYAVYM 332 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP++LA Sbjct: 333 HDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQLA 392 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 393 DPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|17987476|ref|NP_540110.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] gi|17983172|gb|AAL52374.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] Length = 400 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 195/391 (49%), Positives = 267/391 (68%), Gaps = 3/391 (0%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 +V VL ++I+ +D+FD A + ++ P++S +T+A + AI Y Sbjct: 1 MVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAIVQY 59 Query: 86 QDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A+K Sbjct: 60 TDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAALKR 119 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNIPAA 203 FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNIPAA Sbjct: 120 FQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIPAA 179 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R+DP Sbjct: 180 RIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMRKDP 239 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ YM Sbjct: 240 EYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYAVYM 299 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP++LA Sbjct: 300 HDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQLA 359 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 360 DPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 390 >gi|15888502|ref|NP_354183.1| hypothetical protein Atu1164 [Agrobacterium tumefaciens str. C58] gi|15156204|gb|AAK86968.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 443 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 192/380 (50%), Positives = 274/380 (72%), Gaps = 3/380 (0%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 ++++ S +D+FD +R +G+ S+ P++ +E ++AI YQ I+ GGWP+ Sbjct: 38 NDLMGSSRRGNWDDQFDANTSRSAVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPD 97 Query: 97 LPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P + L +G S SVQ LR+RL++SGDL G+S AFD+YV+ A+K FQ RHGL Sbjct: 98 VPTSQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPAD 157 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ T +A+NV +R+ QLQ NL+RI+ + +G R+++VNIPAA++EAVEN +V Sbjct: 158 GVSGEYTTKALNVSAQIRLAQLQTNLVRIQS-MSGDLGQRHMMVNIPAAAIEAVENERVV 216 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 LR+T +VGR R T +++S++ ++ NPYW PRSI++KD++ L+++DP YL+ NNI +I Sbjct: 217 LRNTAVVGRASRPTHVINSKVYEVILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLI 276 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 D KG+EV VDW +P+ PN +FRQDPGKINAM+STKI F++ NN YMHDTP+ LFN Sbjct: 277 DGKGQEVSPTTVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNK 336 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 ++RFE+SGCVRV+N+ DL WLL+DTP WSR +E V+ +R TP+KLA EVPV+FVYI+ Sbjct: 337 LMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIASRVNTPIKLAQEVPVYFVYIT 396 Query: 395 AWSPKDSIIQFRDDIYGLDN 414 AWS KD ++QFRDDIYG D Sbjct: 397 AWSAKDGVVQFRDDIYGKDG 416 >gi|161618731|ref|YP_001592618.1| peptidoglycan binding domain-containing protein [Brucella canis ATCC 23365] gi|254701537|ref|ZP_05163365.1| peptidoglycan binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|254704086|ref|ZP_05165914.1| peptidoglycan binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|254709878|ref|ZP_05171689.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis B2/94] gi|254713879|ref|ZP_05175690.1| peptidoglycan binding domain-containing protein [Brucella ceti M644/93/1] gi|254717064|ref|ZP_05178875.1| peptidoglycan binding domain-containing protein [Brucella ceti M13/05/1] gi|256031370|ref|ZP_05444984.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|256060880|ref|ZP_05451040.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|256369195|ref|YP_003106703.1| peptidoglycan-binding protein, putative [Brucella microti CCM 4915] gi|260566666|ref|ZP_05837136.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|261218874|ref|ZP_05933155.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261317420|ref|ZP_05956617.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|261321627|ref|ZP_05960824.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261752087|ref|ZP_05995796.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261754746|ref|ZP_05998455.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|161335542|gb|ABX61847.1| Peptidoglycan-binding domain 1 protein [Brucella canis ATCC 23365] gi|255999355|gb|ACU47754.1| peptidoglycan-binding protein, putative [Brucella microti CCM 4915] gi|260156184|gb|EEW91264.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|260923963|gb|EEX90531.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261294317|gb|EEX97813.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261296643|gb|EEY00140.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|261741840|gb|EEY29766.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261744499|gb|EEY32425.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] Length = 433 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 195/394 (49%), Positives = 268/394 (68%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|225852279|ref|YP_002732512.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|256044450|ref|ZP_05447354.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113294|ref|ZP_05454162.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 3 str. Ether] gi|256264215|ref|ZP_05466747.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|225640644|gb|ACO00558.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|263094459|gb|EEZ18281.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326408784|gb|ADZ65849.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28] gi|326538502|gb|ADZ86717.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90] Length = 433 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 195/391 (49%), Positives = 267/391 (68%), Gaps = 3/391 (0%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 +V VL ++I+ +D+FD A + ++ P++S +T+A + AI Y Sbjct: 34 MVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAIVQY 92 Query: 86 QDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A+K Sbjct: 93 TDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAALKR 152 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNIPAA 203 FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNIPAA Sbjct: 153 FQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIPAA 212 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R+DP Sbjct: 213 RIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMRKDP 272 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ YM Sbjct: 273 EYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYAVYM 332 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP++LA Sbjct: 333 HDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQLA 392 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 393 DPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|148558991|ref|YP_001258743.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|261324878|ref|ZP_05964075.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|265988457|ref|ZP_06101014.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|148370248|gb|ABQ60227.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|261300858|gb|EEY04355.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|264660654|gb|EEZ30915.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] Length = 446 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 195/394 (49%), Positives = 268/394 (68%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 44 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|265990871|ref|ZP_06103428.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994707|ref|ZP_06107264.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262765820|gb|EEZ11609.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263001655|gb|EEZ14230.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] Length = 446 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 195/391 (49%), Positives = 267/391 (68%), Gaps = 3/391 (0%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 +V VL ++I+ +D+FD A + ++ P++S +T+A + AI Y Sbjct: 47 MVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAIVQY 105 Query: 86 QDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A+K Sbjct: 106 TDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAALKR 165 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNIPAA 203 FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNIPAA Sbjct: 166 FQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIPAA 225 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R+DP Sbjct: 226 RIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMRKDP 285 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ YM Sbjct: 286 EYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYAVYM 345 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP++LA Sbjct: 346 HDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQLA 405 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 406 DPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|254718880|ref|ZP_05180691.1| peptidoglycan binding domain-containing protein [Brucella sp. 83/13] gi|265983867|ref|ZP_06096602.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|306838784|ref|ZP_07471617.1| peptidoglycan-binding protein [Brucella sp. NF 2653] gi|264662459|gb|EEZ32720.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|306406135|gb|EFM62381.1| peptidoglycan-binding protein [Brucella sp. NF 2653] Length = 433 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 196/394 (49%), Positives = 268/394 (68%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPQYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|23501649|ref|NP_697776.1| peptidoglycan-binding protein [Brucella suis 1330] gi|23347568|gb|AAN29691.1| peptidoglycan-binding protein, putative [Brucella suis 1330] Length = 433 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 195/394 (49%), Positives = 268/394 (68%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAACIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|256159492|ref|ZP_05457260.1| peptidoglycan binding domain-containing protein [Brucella ceti M490/95/1] gi|256254778|ref|ZP_05460314.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|260168504|ref|ZP_05755315.1| peptidoglycan-binding protein, putative [Brucella sp. F5/99] gi|261757974|ref|ZP_06001683.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] gi|261737958|gb|EEY25954.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] Length = 433 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 195/394 (49%), Positives = 267/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPVVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|222085506|ref|YP_002544036.1| peptidoglycan binding protein [Agrobacterium radiobacter K84] gi|221722954|gb|ACM26110.1| peptidoglycan binding protein [Agrobacterium radiobacter K84] Length = 437 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 202/393 (51%), Positives = 272/393 (69%), Gaps = 4/393 (1%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMG-IDSDIPIISKETIAQTEKAIAFYQDILSRGGW 94 LD +IN +D+FD A + S+ PI+ +++ ++AIA YQ+I + GGW Sbjct: 40 LDALINNRARGNWDDQFDAKAAARTAAAVQSNTPILGPDSVPNIQQAIAQYQNIAANGGW 99 Query: 95 PELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P++ L LG + +VQ LR+ L+++GDL G+S AFD+YV+ AVK FQ RHGL Sbjct: 100 PQITPGDQKLQLGVTDGAVQALRQHLMVTGDLPREAGISSAFDSYVDGAVKRFQARHGLP 159 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 P G++ TL+AMN+P ++R++QL NL+R++ +G R+V+VNIPA +EAVE+G+ Sbjct: 160 PDGVLGDFTLKAMNIPANVRLQQLNTNLVRLQTFPA-DLGRRHVMVNIPATRVEAVEDGQ 218 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V LR IVGR R T +++S+I ++ NPYW PRSII KD+M L+R+DP YL NNI Sbjct: 219 VALRHEAIVGRESRPTHLINSKIYEVILNPYWTAPRSIIIKDIMPLMRKDPTYLSKNNIR 278 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 ++D KG+EV E +DWNS + PN +FRQDPGK NAMASTKI FY+ NN YMHDTPE LF Sbjct: 279 LLDGKGQEVAPETIDWNSDKAPNLMFRQDPGKTNAMASTKINFYNPNNEYMHDTPEQGLF 338 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N ++RF++SGCVRV+N+ DL WLL DTP W R HIE+V+ TR TP+KLATEVPV+FVY Sbjct: 339 NKLMRFDSSGCVRVQNVRDLATWLLTDTPGWPRQHIEQVISTRVNTPIKLATEVPVYFVY 398 Query: 393 ISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPED 425 ISAWS D I+QFRDDIY LD + + Sbjct: 399 ISAWSAADGIVQFRDDIYNLDGNSQLALDTTQG 431 >gi|254707013|ref|ZP_05168841.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261314480|ref|ZP_05953677.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261303506|gb|EEY07003.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] Length = 433 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 194/394 (49%), Positives = 268/394 (68%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E +DWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESMDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|225627262|ref|ZP_03785299.1| peptidoglycan-binding protein [Brucella ceti str. Cudo] gi|261221958|ref|ZP_05936239.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|265997921|ref|ZP_06110478.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] gi|225617267|gb|EEH14312.1| peptidoglycan-binding protein [Brucella ceti str. Cudo] gi|260920542|gb|EEX87195.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|262552389|gb|EEZ08379.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] Length = 446 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 195/394 (49%), Positives = 267/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 44 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPVVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|306843707|ref|ZP_07476307.1| peptidoglycan-binding protein [Brucella sp. BO1] gi|306276017|gb|EFM57726.1| peptidoglycan-binding protein [Brucella sp. BO1] Length = 433 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 195/394 (49%), Positives = 267/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDAMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPQYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|306841990|ref|ZP_07474664.1| peptidoglycan-binding protein [Brucella sp. BO2] gi|306287918|gb|EFM59335.1| peptidoglycan-binding protein [Brucella sp. BO2] Length = 433 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 196/394 (49%), Positives = 268/394 (68%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPQYLTKNKIRLYDQSGQEVLPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|62289715|ref|YP_221508.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941] gi|82699644|ref|YP_414218.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023964|ref|YP_001934732.1| peptidoglycan binding domain protein [Brucella abortus S19] gi|254697160|ref|ZP_05158988.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730056|ref|ZP_05188634.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 4 str. 292] gi|260545531|ref|ZP_05821272.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260757741|ref|ZP_05870089.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260761566|ref|ZP_05873909.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|62195847|gb|AAX74147.1| peptidoglycan-binding protein, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82615745|emb|CAJ10741.1| Putative peptidoglycan binding domain 1:Twin-arginine translocation pathway signal [Brucella melitensis biovar Abortus 2308] gi|189019536|gb|ACD72258.1| Putative peptidoglycan binding domain protein [Brucella abortus S19] gi|260096938|gb|EEW80813.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260668059|gb|EEX54999.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260671998|gb|EEX58819.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] Length = 433 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 194/394 (49%), Positives = 267/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|163843034|ref|YP_001627438.1| peptidoglycan binding domain-containing protein [Brucella suis ATCC 23445] gi|163673757|gb|ABY37868.1| Peptidoglycan-binding domain 1 protein [Brucella suis ATCC 23445] Length = 433 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 193/394 (48%), Positives = 266/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTTQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQD GKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDSGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|237815203|ref|ZP_04594201.1| peptidoglycan-binding protein [Brucella abortus str. 2308 A] gi|237790040|gb|EEP64250.1| peptidoglycan-binding protein [Brucella abortus str. 2308 A] Length = 446 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 194/394 (49%), Positives = 267/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 44 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|254693508|ref|ZP_05155336.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 3 str. Tulya] gi|261213768|ref|ZP_05928049.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|260915375|gb|EEX82236.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] Length = 433 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 194/394 (49%), Positives = 267/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGLNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|294852125|ref|ZP_06792798.1| peptidoglycan binding domain-containing protein [Brucella sp. NVSL 07-0026] gi|294820714|gb|EFG37713.1| peptidoglycan binding domain-containing protein [Brucella sp. NVSL 07-0026] Length = 433 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 194/394 (49%), Positives = 269/394 (68%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL G++ T A+NV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAVNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV +E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPLESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|325292539|ref|YP_004278403.1| hypothetical protein AGROH133_05364 [Agrobacterium sp. H13-3] gi|325060392|gb|ADY64083.1| hypothetical protein AGROH133_05364 [Agrobacterium sp. H13-3] Length = 443 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 196/402 (48%), Positives = 278/402 (69%), Gaps = 8/402 (1%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 ++++ S +D+FD +R +G+ S+ P++ +E ++AI YQ I+ GGWP+ Sbjct: 38 NDLMGSSRRGNWDDQFDANSSRSAVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPD 97 Query: 97 LP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P + L +G S SVQ LR+RL++SGDL G+S AFD+YV+ A+K FQ RHGL Sbjct: 98 VPVTQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPAD 157 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ T +A+NV +R+ QLQ NL+RI+ + +G R+++VNIPAA++EAVEN +V Sbjct: 158 GVSGEYTTKALNVSAQIRLAQLQTNLVRIQS-MSGDLGQRHLMVNIPAAAIEAVENERVV 216 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 LR+T +VGR R T +++S+I ++ NPYW PRSI++KD++ L+++DP YL+ NNI +I Sbjct: 217 LRNTAVVGRASRPTHVINSKIYEVILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLI 276 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 D KG+EV VDW +P+ PN +FRQDPGKINAM+STKI F++ NN YMHDTP+ LFN Sbjct: 277 DGKGQEVSPTAVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNK 336 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 ++RFE+SGCVRV+N+ DL WLL+DTP WSR +E V+ TR TP+KLA EVPV+FVYI+ Sbjct: 337 LMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIATRVNTPIKLAQEVPVYFVYIT 396 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPLPED-----HPIDSD 431 AWS KD ++QFRDDIY D + P+D D Sbjct: 397 AWSAKDGVVQFRDDIYEKDGNAELALNTTTGIEQPAGPVDDD 438 >gi|304391945|ref|ZP_07373887.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303296174|gb|EFL90532.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 421 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 182/387 (47%), Positives = 248/387 (64%), Gaps = 3/387 (0%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + + +D I+N ND FD A + + PI + +TI ++AIA Y +I+ Sbjct: 29 ALAETAIDRILNAPNRDSWNDSFD-ATAPTKAKVVTSTPIFAPQTIDSVQQAIAEYSNIV 87 Query: 90 SRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 GGWP +P L LG S +V+ LR+RLIISGDL G+S FD YV++AVK FQ R Sbjct: 88 RNGGWPRVPAGKKLELGVSDDAVRALRQRLIISGDLPRGAGVSPQFDTYVDAAVKRFQAR 147 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ + A+NV +R+ QLQ NL+R+K + +G RYV+VNIPAA +EAV Sbjct: 148 HGLPSDGVMGRYSFAALNVSAPIRLGQLQTNLVRLK-AMSGYLGDRYVMVNIPAAEIEAV 206 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E G+V R T IVGR RQTPIL+S+I + NPYW P+SII KD++ L+R++P YL + Sbjct: 207 ELGRVAQRHTAIVGRESRQTPILNSKIYELNLNPYWTAPKSIILKDIIPLMRKNPNYLTE 266 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N I + D +EV + V+WN+ E FRQ+PG+INAM S KI F + + YMHDTP+ Sbjct: 267 NKILLFDGNSQEVSPQSVNWNTEEAVKLRFRQEPGRINAMGSVKINFPNPHAVYMHDTPQ 326 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 +FN ++RFE+SGCVRV+N+ DL VWL KDTP SR +IE ++ + T +KL VPV Sbjct: 327 KGIFNKLLRFESSGCVRVKNVRDLLVWLAKDTPGASRSNIESIIASGDRTDLKLTAPVPV 386 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNV 415 +F Y+SAWS + FRDDIY D V Sbjct: 387 YFAYVSAWSNTSGVAHFRDDIYQRDGV 413 >gi|254689025|ref|ZP_05152279.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 6 str. 870] gi|256257275|ref|ZP_05462811.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 9 str. C68] gi|260754520|ref|ZP_05866868.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|297248121|ref|ZP_06931839.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|260674628|gb|EEX61449.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|297175290|gb|EFH34637.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 433 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 193/394 (48%), Positives = 266/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 31 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL ++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADAVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|260883548|ref|ZP_05895162.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260873076|gb|EEX80145.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 446 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 193/394 (48%), Positives = 266/394 (67%), Gaps = 3/394 (0%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD A + ++ P++S +T+A + AI Sbjct: 44 ASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNI 200 +K FQ RHGL ++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADAVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|209965708|ref|YP_002298623.1| peptidoglycan binding domain protein, putative [Rhodospirillum centenum SW] gi|209959174|gb|ACI99810.1| peptidoglycan binding domain protein, putative [Rhodospirillum centenum SW] Length = 596 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 120/419 (28%), Positives = 193/419 (46%), Gaps = 16/419 (3%) Query: 20 LPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L G L + S +D E+I E A + + P Sbjct: 152 LLFGRDLAAGRLDPSRIDPELIVERQEPDPQALLRQVAEAADPGGAVRAMAPARP--EYR 209 Query: 77 QTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLS--- 131 + A+A Y+ + + GGW +P L G S V LR RL +G+L P+ Sbjct: 210 RLRAALAAYRTLAAAGGWLAVPTGGETLKPGQSDPRVPALRARLAATGELSPAAPAPADP 269 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +D +E+AV+LFQ R+GL+P G V ++ A+NV R+ Q+++N+ R + L + Sbjct: 270 QFYDPALEAAVRLFQSRNGLEPDGAVGRQSVAALNVTAQQRVTQIEINMERWRWLPA-DL 328 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G Y++VN+ A L E + + ++VG +TP+ + + NPYW +P SI Sbjct: 329 GPSYLIVNLAAFELAVFEGDRPVHTARIVVGAPFTRTPVFSESMTYLELNPYWNVPPSIA 388 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + ++ R+DP YL ++ + + V VDW + RQ PG N++ Sbjct: 389 RDEIFPKARKDPGYLARRGYELLSDWSETAVPVDPATVDWRHGNLNRYKVRQKPGDTNSL 448 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK--DTPTWSRY 366 K F +R N Y+HDTP LF R + GC+RV N +DL +L+ T W R Sbjct: 449 GRIKFMFPNRFNVYLHDTPSKRLFERANRTFSHGCMRVENPLDLAETVLRLTGTTGWDRA 508 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPED 425 ++ + + V+L +PVH Y++A+ +D + FR DIYG D + P+ Sbjct: 509 RLDAAIAGDQRQVVRLRRPLPVHVTYVTAFVEEDGTVAFRPDIYGRDTTLAAALAAPQG 567 >gi|118587981|ref|ZP_01545391.1| hypothetical protein SIAM614_10408 [Stappia aggregata IAM 12614] gi|118439603|gb|EAV46234.1| hypothetical protein SIAM614_10408 [Stappia aggregata IAM 12614] Length = 434 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 159/379 (41%), Positives = 245/379 (64%), Gaps = 5/379 (1%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-- 98 ++ D FD + + S P +S +T AI YQ I+ GGW + Sbjct: 50 AQNQQVEWADNFDIATDHITE-VKSSAPTLSPQTADYIAAAIDRYQRIVQAGGWGTVSTG 108 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L +G V LR RL++SGDL+ GLS FD+YV++ ++ FQ+RHGL P G++ Sbjct: 109 GKALRIGAKDPRVVELRRRLMVSGDLEQQAGLSDTFDSYVDAGLRRFQLRHGLIPDGVMG 168 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 ST+ A+N+P D+R+RQL+ N++R++ + +G RYV+VNIPAA +EAVENG V R T Sbjct: 169 DSTVTALNIPADVRLRQLETNMIRMRSMSGF-LGDRYVMVNIPAAEIEAVENGMVRSRHT 227 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 +VG++DRQTPIL+S+I + FNPYW +P+SII+KD++ +++DPQYL NNI + D Sbjct: 228 AVVGKIDRQTPILNSKIYELNFNPYWTVPKSIIRKDLIPKMKEDPQYLAKNNIRIFDWSN 287 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 E+ +++DWN+ E + F QDPG N++ S +I F++++ Y+HDTP LF RF Sbjct: 288 NELTWQQIDWNTDEATQYRFTQDPGSENSLGSVRINFHNKHQVYLHDTPSKTLFGEANRF 347 Query: 339 ETSGCVRVRNIIDLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVRV+N+ +L WLL+ TP W R ++ V++T + VKL +++P++ YI+AW+ Sbjct: 348 HSSGCVRVQNVRELVTWLLQSTTPDWDRGRVDGVIRTGEREDVKLKSQIPLYLTYITAWA 407 Query: 398 PKDSIIQFRDDIYGLDNVH 416 D ++ FRDDIY D+++ Sbjct: 408 NADGVVHFRDDIYDRDDLY 426 >gi|182677877|ref|YP_001832023.1| peptidoglycan binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633760|gb|ACB94534.1| Peptidoglycan-binding domain 1 protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 456 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 169/401 (42%), Positives = 261/401 (65%), Gaps = 10/401 (2%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSI--VNDRFDNFLARVDMGIDSDIPIISKETI 75 ++L MGL L + P+ S + Y S R+D A + + + S++P++S +T+ Sbjct: 33 ILLAMGLCLSQLPLQVS---SALAGPYGSQAEWAQRYDTD-ANLAV-LRSNVPVLSVQTL 87 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 TE+AI Y++I++RGGW + L LG ++ +V LR+RLI +GDLD S G S F Sbjct: 88 NATEQAIETYRNIVARGGWNRVSASATLKLGANNAAVTELRKRLIETGDLDASAGTSPIF 147 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D+YV++ V+ FQ RHGL +G+V+ T+ AMNVP D+R+ QL+VNL+R++ +G R Sbjct: 148 DSYVDAGVRHFQARHGLAETGIVNRETVTAMNVPADVRLHQLEVNLVRLRSY-SGNLGER 206 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V+ NIPA ++E VENG V VG++DRQ+P++ +R I FNPYW +P SII+KD Sbjct: 207 FVMANIPAMAVETVENGVVATHHIAGVGKIDRQSPVMMTRATDINFNPYWTVPASIIRKD 266 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKI 313 ++ +++DP YL D+ I + ++ G+E+ +V+WNS E N+ FRQDPG IN++ +I Sbjct: 267 LIPRMQKDPNYLSDHKIRIFNKDGQELQSSQVNWNSLEATNYRFRQDPGGDINSLGVVRI 326 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + YMHDTPE +F + RF +SGC+RV+N+ D WLLKDTP W R HI+E ++ Sbjct: 327 NIANPYGVYMHDTPEKGVFGDDERFVSSGCIRVQNVRDYVTWLLKDTPGWDRAHIDEAIR 386 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + K+ + VPV++VY++AW+ D ++QFR+DIY D Sbjct: 387 SGQRIDAKITSSVPVYWVYVTAWATPDGLVQFREDIYQRDG 427 >gi|328543533|ref|YP_004303642.1| Twin-arginine translocation pathway signal [polymorphum gilvum SL003B-26A1] gi|326413277|gb|ADZ70340.1| Twin-arginine translocation pathway signal [Polymorphum gilvum SL003B-26A1] Length = 415 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 171/403 (42%), Positives = 258/403 (64%), Gaps = 5/403 (1%) Query: 22 MGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 G+ + + AS L+ + + DRFD I S P +S ET A Sbjct: 8 FGIGAGVQSVTASPLEALRQYNQRIEWEDRFD-ATMESLEAIKSSKPTLSPETADYLAAA 66 Query: 82 IAFYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 I YQ I+ +GGW ++ L +G SV LR RLI SGDL+ + GLS FD+YV+ Sbjct: 67 INRYQFIVQQGGWGKVQSSRHGLRIGAQDASVVALRRRLIASGDLEQTAGLSDTFDSYVD 126 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +AV+ FQ+RHGL P G+V +T+ A+NVP ++R++QL+ NL+R++ + +G RYV+VN Sbjct: 127 AAVRRFQVRHGLIPDGVVGQTTVVALNVPAEVRLQQLETNLVRLRSMSGF-LGDRYVMVN 185 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IPAA +EAVENG+V R T +VG++DRQTPIL+S+I + FNPYW +P SII+KD++ + Sbjct: 186 IPAAEIEAVENGRVRSRHTAVVGKIDRQTPILNSKIYELNFNPYWTVPVSIIRKDLIPKM 245 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 ++DP+YL N I + D K E+ +++DWN+ E + FRQ+PG IN++ S +I F++++ Sbjct: 246 KEDPEYLAKNKIRIFDWKNNELSWQQIDWNTDEATQYQFRQEPGDINSLGSVRINFHNQH 305 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK-DTPTWSRYHIEEVVKTRKTT 378 Y+HDTP LF + RF +SGCVRV+N+ +L W+L+ TP WSR ++E ++ Sbjct: 306 QVYLHDTPSKSLFGSDYRFHSSGCVRVQNVRELVTWMLESTTPDWSRARVDETIRMGVRE 365 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 VKL T+VP++ Y++AWS + I+ FRDDIY D ++ + Sbjct: 366 DVKLKTQVPLYMTYVTAWSTDEGIVHFRDDIYNRDGLYANEVA 408 >gi|217978266|ref|YP_002362413.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217503642|gb|ACK51051.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 447 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 168/421 (39%), Positives = 255/421 (60%), Gaps = 17/421 (4%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L +G SL + A D+ R+D R+ + S+ P++S++T+ Sbjct: 18 ILTGLCLGASLPA--LAAGYSDQA-------EWAQRYDAAP-RLAV-TRSNTPVLSQQTL 66 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A TE+AI Y+ I++ GGW +P L LG S SV LR+RL+ SGDLD S G S F Sbjct: 67 AATEQAIETYRQIVASGGWNMVPASNVLKLGVSGPSVVALRKRLVASGDLDASAGASPVF 126 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D++VE+ VK FQ RHGL +G+V T A+N DLR+ QL++NL+R++ +G R Sbjct: 127 DSFVEAGVKHFQARHGLLETGLVSKDTFAALNATADLRLHQLEINLIRLRSY-SGNLGER 185 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V+ NIPA ++E VENG V VG++DRQ+P++ ++ I FNP+W +P S+I+KD Sbjct: 186 FVMANIPAMAVETVENGAVATHHAAGVGKIDRQSPVMMTKATDINFNPFWTMPPSLIKKD 245 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKI 313 ++ ++++P YL ++ I + D+ +EV ++DW + + N+ +RQDPG IN++ +I Sbjct: 246 LIPRMQKNPDYLTEHKIRIFDKDNQEVPPSQIDWTTNQATNYRYRQDPGGDINSLGVVRI 305 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + YMHDTPE +F + RF +SGC+RV+N+ D WLLKDTP W R HI+E ++ Sbjct: 306 NISNPYGVYMHDTPEKGVFGDDFRFVSSGCIRVQNVRDYVAWLLKDTPGWDREHIDEAIR 365 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN---VHVGIIPLPEDHPIDS 430 + + KLAT VPV++VYI+AWS + +IQFRDDIY D + P + I Sbjct: 366 SGQRIDAKLATPVPVYWVYITAWSTPEGLIQFRDDIYQRDGFGPTASSGVGAPLEQAIQP 425 Query: 431 D 431 D Sbjct: 426 D 426 >gi|254502740|ref|ZP_05114891.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222438811|gb|EEE45490.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 408 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 157/376 (41%), Positives = 244/376 (64%), Gaps = 6/376 (1%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP--IRP 101 D FD + + S P +S T+ AI YQ I+ GGW + + Sbjct: 26 QDLEWADSFDIATDNITE-VKSYAPTLSPTTVDYIGAAITRYQSIVQMGGWGTVSTGGKA 84 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V ++R+RLIISGDL+ GLS FD+YV++A++ FQ+RHGL P G++ ST Sbjct: 85 LRIGMKDPRVVQVRQRLIISGDLEQQAGLSDTFDSYVDAALRRFQLRHGLIPDGVMGEST 144 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 +EA+N+P +R+RQL+ NL+R++ + +G RYV+VNIPAA +EAVE+G+V R T +V Sbjct: 145 VEALNIPAYVRLRQLETNLVRVRS-MSGNLGDRYVMVNIPAAEIEAVEDGRVRSRHTAVV 203 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKE 280 G++DRQTPIL+S+I + FNPYW +P SII+KD++ +++DP+YL N I + + +E Sbjct: 204 GKIDRQTPILNSKIYELNFNPYWTVPVSIIRKDLIPKMKEDPEYLSRNKIRIFNWRDNQE 263 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 V +++DWN+ E + F QDPG+ N++ S +I F++++ Y+HDTP LF RF + Sbjct: 264 VAWQQIDWNTDEATQYRFTQDPGQENSLGSVRINFHNKHQVYLHDTPSKTLFGEDYRFHS 323 Query: 341 SGCVRVRNIIDLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 SGCVRV+N+ +L WLL+ TP W R ++ V++T + VKL +P++ Y++AW+ Sbjct: 324 SGCVRVQNVRELVTWLLQSTTPDWDRTKVDSVIRTGEREDVKLKRSIPLYMTYVTAWANA 383 Query: 400 DSIIQFRDDIYGLDNV 415 D ++ FR+DIY D++ Sbjct: 384 DGVVHFREDIYNRDDL 399 >gi|218662321|ref|ZP_03518251.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli IE4771] Length = 495 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 188/367 (51%), Positives = 258/367 (70%), Gaps = 5/367 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD ++N +D+FD +R + S+ PI+ +++A ++AI YQ I + Sbjct: 35 QSALDGLLNAPRRGNWDDQFDAKAASRTATAVVSNTPILGPQSVASAQQAIMQYQQIAAA 94 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG S +VQ LR+RL I+GDL GLS AFD+YV+ AVK FQ RH Sbjct: 95 GGWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGLSSAFDSYVDGAVKRFQARH 154 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL N++R++ + +G R+++VNIPAA +EAVE Sbjct: 155 GLPADGVLGEFTLKAMNIPADVRLQQLNTNIVRLQTFP-EDLGRRHLMVNIPAAYVEAVE 213 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 214 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKN 273 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 I +ID KG EV E VDWN E PN +FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 274 AIRLIDGKGNEVAPETVDWNG-EAPNLMFRQDPGKINAMASTKINFYNKNGEYMHDTPQQ 332 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ + TP+KLA EVPV+ Sbjct: 333 GLFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQMEQVIASGVNTPIKLAAEVPVY 392 Query: 390 FVYISAW 396 FVYISAW Sbjct: 393 FVYISAW 399 >gi|254469893|ref|ZP_05083298.1| twin-arginine translocation pathway signal [Pseudovibrio sp. JE062] gi|211961728|gb|EEA96923.1| twin-arginine translocation pathway signal [Pseudovibrio sp. JE062] Length = 448 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 166/380 (43%), Positives = 244/380 (64%), Gaps = 4/380 (1%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-L 102 + D FD ++ ++ ID PIISK+T AI Y+ I GGWPE+ + L Sbjct: 63 QGTEWEDTFDEGVSSLEQ-IDFVAPIISKQTTQYMIDAILDYERIALNGGWPEVSTKKVL 121 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G + ++ LR+RLI+SGD+ G+S FD+YV+SAV+ FQ+RHGL P G+V +T+ Sbjct: 122 RIGMRAPAIASLRQRLIVSGDMAQHAGVSEVFDSYVDSAVRRFQLRHGLTPDGVVGRATV 181 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 AMNVPV++R++QL+ NL R+ L + YV VNIPAA +E VENG+V R T +VG Sbjct: 182 IAMNVPVEVRLQQLRTNLERVSAL-ADNVSDTYVNVNIPAARIEVVENGRVRSRHTAVVG 240 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + DRQ+PIL S I + FNPYW +P SII+KD++ +++DPQYL NNIH+ D GKE Sbjct: 241 KQDRQSPILSSAIYEVNFNPYWTVPVSIIRKDLIPKMQKDPQYLAKNNIHIFDWYGKEKQ 300 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +E+DWN+ E + F Q+PG+ N+M S +I F + + Y+HDTPE LF RF +SG Sbjct: 301 WQEIDWNTDEATKYRFTQEPGEGNSMGSIRINFNNTHQVYLHDTPEQSLFGEGYRFHSSG 360 Query: 343 CVRVRNIIDLDVWLL-KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 CVRV+N+ +L WLL TP W+R ++ + + + VK+ + +P+H Y++AW+ D Sbjct: 361 CVRVQNVRELVTWLLGSTTPEWTRSRVDATINSGERLDVKMKSRIPLHLSYVTAWALSDG 420 Query: 402 IIQFRDDIYGLDNVHVGIIP 421 ++ FRDDIY D ++ + Sbjct: 421 MVHFRDDIYDKDGLYSASVD 440 >gi|218515859|ref|ZP_03512699.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli 8C-3] Length = 372 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 193/357 (54%), Positives = 257/357 (71%), Gaps = 4/357 (1%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRER 117 + S+ PI+ +++A ++AI YQ I + GGWPE+ L LG S +VQ LR+R Sbjct: 1 ASAVVSNTPILGPQSVASAQQAIMQYQQIAAAGGWPEVNPGDQRLQLGVSHPAVQALRQR 60 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L I+GDL G+S AFD+YV+ AVK FQ RHGL G++ TL+AMN+P D+R++QL Sbjct: 61 LAITGDLPREAGMSSAFDSYVDGAVKRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQLN 120 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 NL+R++ + +G R+V+VNIPAA +EAVE+G V R T +VGR+ R T +++S+I Sbjct: 121 TNLVRLQTFP-EDLGRRHVMVNIPAAYVEAVEDGSVATRHTAVVGRLSRPTHLVNSKIYE 179 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 ++ NPYW PRSI++KD+M L+R+DP YL+ N I +ID KG EV E VDWN E PN Sbjct: 180 VILNPYWTAPRSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETVDWNG-EAPNLQ 238 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 FRQDPGKINAMASTKI FY++N YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL Sbjct: 239 FRQDPGKINAMASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTNWLL 298 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++TP WSR +E+V+ T TP+KLATEVPV+FVYISAW D I+QFRDDIY +D Sbjct: 299 RETPGWSRQQMEQVIATGVNTPIKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 355 >gi|323136642|ref|ZP_08071723.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322397959|gb|EFY00480.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 435 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 160/402 (39%), Positives = 255/402 (63%), Gaps = 9/402 (2%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 L +GLSL + D + R+D AR+ + S PI+S +T+ Sbjct: 5 AIFQLSLGLSLAAGAPAFAGSDY----DGQAEWAQRYDAD-ARLTVS-RSTTPILSTQTV 58 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A TE AI +++I++ GGWP++P L LG SS +V LR+RLI+SGD+ G S F Sbjct: 59 AATEAAIEQFREIVANGGWPQVPAGHQLRLGVSSPAVSTLRKRLIVSGDIGHETGTSPIF 118 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D+YVE+AV+ FQ RHG+ +G+V+ T A+NVP + R+RQL+ NL+R++ + +G R Sbjct: 119 DSYVEAAVRRFQARHGIIETGVVNQQTFAALNVPAETRLRQLETNLVRLRSF-SRDLGNR 177 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 YV NIPAA++E VENG+V VG++DRQ+P++ ++ ++ FNP+W +P S+I+KD Sbjct: 178 YVTANIPAATVETVENGQVVTHHIAGVGKIDRQSPVMQTKAIQVNFNPFWTVPASVIRKD 237 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD-PGKINAMASTKI 313 ++ ++ DP YL DN+I + +++G+E+ E+++W S + N+ FRQD G N++ +I Sbjct: 238 LIPKMQADPNYLHDNHIRVYNKEGQELQPEQINWRSLDALNYKFRQDIGGDFNSLGVVRI 297 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + + YMHDTP +F + RF +SGC+R++N+ D +LL++TP W R HI++V+ Sbjct: 298 DIANPYGVYMHDTPAKGVFGDDFRFVSSGCIRLQNVRDYVAFLLRETPGWDRDHIDQVIA 357 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + + VK+ VPV++VY++AW D + QFRDDIY D + Sbjct: 358 SGERVDVKITPPVPVYWVYVTAWGAPDGVTQFRDDIYQRDGL 399 >gi|304393662|ref|ZP_07375590.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294669|gb|EFL89041.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 527 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 108/409 (26%), Positives = 190/409 (46%), Gaps = 9/409 (2%) Query: 19 ILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 L +GL L SV D I+ + + A + + + + Q Sbjct: 120 FLKLGLDLYSGFTTPSVSDPNIVIKRKKRDATQWLEGATATGVSAMLTTLRPRHPQ-YGQ 178 Query: 78 TEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + +A Y+ +++RGGW + L G + V +R+ L G + +D Sbjct: 179 LRQMLAGYRSLMARGGWQPITEGITLKPGMTDARVNEMRQNLAARGYDVRGVEFADLYDE 238 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + AVK FQ RHGL G+ ++ A++V R+ Q+ +NL R + L + +G +V Sbjct: 239 GLVDAVKHFQKRHGLASDGVAGPASFRALSVTAAQRVDQIAINLERWRWLP-RDLGKAHV 297 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 LVN + + ++ + VIVG+ Q+P+ S I+ FNP W +P SI K+M+ Sbjct: 298 LVNQAGFEMFTMNGTEIYDKRRVIVGKPFHQSPMFSSSISYAEFNPTWTVPLSIAGKEML 357 Query: 257 ALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGKINAMAST 311 +R +P YL + N + G +++ VDW++ F +R Q+PG NA+ Sbjct: 358 PKIRNNPAYLVEKNYSLYSGWGNNSQKLNPYAVDWSAVSAKRFPYRIVQEPGPRNALGQV 417 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ + Y+HDTP LF+ R + GC+RV +D L + + + + Sbjct: 418 KFIFPNKFSVYLHDTPSRNLFSRTGRAFSHGCIRVDKPLDFARKLYELQGGMNPSQVTPI 477 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++++K V ++PVH Y +AW +D + F +D+Y D + + Sbjct: 478 IESKKRKRVNFKRKMPVHLAYFTAWINEDGVPLFYEDVYKRDKLVRKFL 526 >gi|114319260|ref|YP_740943.1| peptidoglycan binding domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225654|gb|ABI55453.1| Peptidoglycan-binding domain 1 protein [Alkalilimnicola ehrlichii MLHE-1] Length = 559 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 130/420 (30%), Positives = 212/420 (50%), Gaps = 19/420 (4%) Query: 24 LSLVEKPIHASVLDEIIN---ESYHSIVNDRFDN-----FLARVDMGIDSDIPIISKETI 75 L L E + + +++ E D + + P ++ Sbjct: 131 LQLAEDALTGQLNPDVVAPDWELQSPPSEDLVQALSQGLAEDDIATAVRQLYP--DQDNY 188 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA- 133 Q +A+A +Q + +G +P + PL +G+ V+ LRE+L + GDL+ LS Sbjct: 189 HQMRRALARFQALAEQGDYPRMEAGPLLRVGDRDPRVETLREQLRLLGDLEDDAPLSETL 248 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + +E+AV+ FQ RHGL G+V T+ A+N P R QL+VNL R++ + + +G Sbjct: 249 YGEALEAAVRDFQRRHGLQVDGVVGPRTVAALNTPPADRAEQLRVNLERLRWMP-RDLGD 307 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 RY+LVNI S+ G+ +R V+VGR R+TP+ + ++ NP W +P + + Sbjct: 308 RYILVNIAGFSMTVHAEGETVMRQRVVVGRDYRRTPVFTGNMTYLVLNPSWEVPHRLATR 367 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP--PNFIFRQDPGKINAM 308 D++ L+++DP+YL+ ++ G +E+ E +DW+ + RQ PG NAM Sbjct: 368 DVLPLIQRDPEYLERMGFRVLQGWGADEREIDPESLDWDRYSHRYFPYRLRQLPGPQNAM 427 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F +R+N Y+HDTP LF R +SGC+RV ++L WLL+D WS I Sbjct: 428 GRVKFMFPNRHNVYLHDTPSRELFQQPRRAFSSGCIRVERPLELAAWLLRDQRQWSPEAI 487 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHP 427 ++ ++ R+ V L +PVH Y +AW + + FRDD+Y D V + LP+ P Sbjct: 488 DKALEERRERTVPLRRGIPVHLQYWTAWVDAEGTLHFRDDLYDRDTGVAAALAALPKPEP 547 >gi|296444378|ref|ZP_06886343.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296258025|gb|EFH05087.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 443 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 162/384 (42%), Positives = 248/384 (64%), Gaps = 6/384 (1%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LH 103 + R+D R+ + S PI+S +T+A TE AI QDI++RGGWP +P L Sbjct: 36 QAEWAQRYDADP-RLTVS-RSTTPILSTQTVAATEAAIQQMQDIVARGGWPMVPAGQQLK 93 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG++S +V LR RL+ISGD+ G S FD+YVE+AV+ FQ RHG++ +G+V T Sbjct: 94 LGSNSPAVSILRRRLMISGDIGQDAGASPIFDSYVEAAVRRFQARHGVNATGVVAQQTFV 153 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 AMNVP + R+RQL+ NL+R++ + +G RYV NIPAAS+E VENG V VG+ Sbjct: 154 AMNVPAEARMRQLETNLIRLRSF-SRDLGNRYVTANIPAASVETVENGYVVTHHIAGVGK 212 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 +DRQ+P++ ++ +I FNP+W +P S+I+KD++ ++ DP YL N+I + ++ G E+ Sbjct: 213 IDRQSPVMQTKAIQINFNPFWTVPASVIRKDLIPKMQADPNYLTANHIRVYNKDGMELAP 272 Query: 284 EEVDWNSPEPPNFIFRQD-PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 E+++WNS + N+ FRQD G N++ +I+ + YMHDTP +F + RF +SG Sbjct: 273 EQINWNSLDAMNYKFRQDIGGDFNSLGVVRIDIANPYGVYMHDTPAKGIFGDDFRFVSSG 332 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 C+R++N+ D WLLK+TP W R HI+EV+++ + V++ VPV++VY++AW+ D + Sbjct: 333 CIRLQNVRDYVAWLLKETPGWDRDHIDEVIRSGERVDVRITPAVPVYWVYVTAWAAPDGL 392 Query: 403 IQFRDDIYGLDNV-HVGIIPLPED 425 IQFRDDIY D + + P+ Sbjct: 393 IQFRDDIYQRDGLGLASAVSAPQP 416 >gi|119357927|ref|YP_912571.1| peptidoglycan binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355276|gb|ABL66147.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides DSM 266] Length = 563 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 124/424 (29%), Positives = 205/424 (48%), Gaps = 20/424 (4%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVN---------DRFDNFLARVDMGIDSDIP 68 L+L + + + + ES N F A I + Sbjct: 137 LLLSDAFLTLAYHLRFGKV---LPESLDPDWNVNRTLAKSALEFRLQQAIAAERIAGLLD 193 Query: 69 IISKE--TIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD 125 +S + +K +A Y+ I+ GGW ++ + + G+ V+++R RL SGDL Sbjct: 194 ELSPRHPGYERMKKGLAHYRVIVKTGGWQKVTEGKKIKEGDRDNRVRQIRRRLQESGDLV 253 Query: 126 -PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 S S F + AV FQ R+GL G + T+ MN+ RI Q+++N+ R + Sbjct: 254 FRSADTSRVFSKAMADAVVRFQKRNGLSVDGAAGAETIREMNISAAERIEQIRINMERYR 313 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + + R VLVNIP +L+ ++NG+ + VIVG+ R+TP+ + + I+FNP W Sbjct: 314 WFI-GDLEQRAVLVNIPGFTLQYIDNGQPRWETRVIVGKTGRETPLFKADMQYIVFNPQW 372 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDP 302 VIP +I+ KD + +R+ YL N+ +ID G+ V V+W+ N +R Q Sbjct: 373 VIPPTILAKDALPGIRKSRSYLYSRNLKVIDRNGRVVDPATVNWSQYTAANLPYRLQQTA 432 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G ++ K +++ Y+HDTP LF R +SGC+RV+N ++L +L+D+ Sbjct: 433 GDHGSLGRIKFMLPNKHIVYLHDTPHKELFQKSTRNFSSGCIRVQNPLELAELVLQDSVK 492 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W+ I +KT KT+ V L +PV+ +Y++A+ D I FR D+Y DN + + Sbjct: 493 WNSDAINAAIKTGKTSNVNLPKHIPVYLLYLTAFPQDD-AIHFRGDVYNRDNDVLKALNK 551 Query: 423 PEDH 426 Sbjct: 552 SLPE 555 >gi|332558206|ref|ZP_08412528.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332275918|gb|EGJ21233.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 536 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 121/409 (29%), Positives = 192/409 (46%), Gaps = 13/409 (3%) Query: 19 ILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 +L L + +D I F A +DS P A+ Sbjct: 124 LLAWAHDLHGGALEPGKVDPGIKRAVKRLDPRSVLTAFEANPVHFLDSLAPRGPD--YAR 181 Query: 78 TEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +A + ++ GGW +P L G + LR+RL+ G L S S +DA Sbjct: 182 LMRARLDLEATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYLGRSTAAS--YDA 239 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 V +AV+ FQ HGL P G+ T+ A+NV + R++ + V L R + L G R++ Sbjct: 240 EVAAAVRSFQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALERERWL-SIDRGERHI 298 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ S ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ Sbjct: 299 WVNLADFSTRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKE 358 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LL+++P ++ +ID +G+EV V++N+ NF F RQ P NA+ K Sbjct: 359 YLPLLQRNPN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVK 416 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ N Y+HDTP LF+ VR + GC+R+ D LL + + Sbjct: 417 FMFPNQWNIYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTEDPEGLFQSHL 476 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + + + V+L VPVH VY +AW+ + +RDDIYG D V + Sbjct: 477 SSGRESVVRLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDALS 525 >gi|194334694|ref|YP_002016554.1| peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] gi|194312512|gb|ACF46907.1| Peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] Length = 565 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 116/387 (29%), Positives = 192/387 (49%), Gaps = 19/387 (4%) Query: 47 IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP--LHL 104 + + + ++ P+ K +KA+A Y+D S GGWP +P P H Sbjct: 175 LWRLQNAIEGDSIAAALEQIRPVHPK--YLSLKKALARYRDYESDGGWPSIPAGPSIRHE 232 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSV-------AFDAYVESAVKLFQMRHGLDPSGMV 157 G+ + LR RL I+G+ + + + AV +FQ R+GL+ G+V Sbjct: 233 GDRDERIPVLRRRLEITGEAVSLATVDTSFADSAMVYSKELVDAVMVFQRRNGLEVDGVV 292 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 TLEA+N+ R+ Q+++NL R + + K+ +++VNI +++ VENG + S Sbjct: 293 GPRTLEALNISASQRVEQIRINLERYRWFI-TKLEPTFIMVNIAGFTIQYVENGALTWSS 351 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VIVG +TP+ + + ++FNP W +P I++K+ + ++ D YL N + +ID Sbjct: 352 RVIVGEPFWKTPVFRADMRYLIFNPSWNVPPGILKKEALPSMKSDGGYLSRNGLQVIDRN 411 Query: 278 GKEVFVEEVDWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G V +DW + RQ PG NA+ K F +R+ Y+HDTP LF+ Sbjct: 412 GNVVDPSSIDWAGYSAGSFPYRLRQPPGVRNALGRVKFMFPNRHFVYLHDTPGKHLFDRS 471 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R + GC+R+ N +DL LL WS IE + + KT V L+ +PV +Y++A Sbjct: 472 ERAFSHGCIRLENPLDLAGVLL----GWSPEQIESALSSGKTRTVNLSRPIPVFLLYLTA 527 Query: 396 WSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + D + FR+D+Y D + + Sbjct: 528 VAEGD-EVLFRNDVYNRDAAVLNALDR 553 >gi|170751743|ref|YP_001758003.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658265|gb|ACB27320.1| Peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 432 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 155/390 (39%), Positives = 238/390 (61%), Gaps = 7/390 (1%) Query: 41 NESYHSIVNDRFDNFLARVD--MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP 98 + + A +PI+S +T+A TE+ + Y+DI++RGGW ++ Sbjct: 28 ARDQGNYAQAEWAQDYASPAGMQVQRETVPILSPQTVASTEQMVERYKDIVARGGWRQVS 87 Query: 99 -IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ +V +R+RLI++GDLDP+ G S +D+YV + VK FQ RHGL +G + Sbjct: 88 GADHLRIGSRGPAVAAIRQRLIVTGDLDPAAGSSGVYDSYVAAGVKRFQARHGLSQTGAM 147 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +T +AMNVP D+R+RQL++N++R++ +G R+V+ NIPAA +E VENG+V Sbjct: 148 TMATQQAMNVPADVRLRQLEINVVRLRSY-SGDLGRRFVITNIPAALVETVENGQVVTLH 206 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VG++DRQ+PI++++ +I FNP W +P SI++KD++ +++DP YL DN I ++ Sbjct: 207 AAGVGKIDRQSPIMNTKATQINFNPTWTVPASIVKKDLIPKMQKDPNYLTDNKIRIL-SN 265 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 G EV + V+W S E + +RQD G N+M +I + +MHDT +F + Sbjct: 266 GSEVSPKSVNWFSDEGTRYTYRQDSGADFNSMGIVRINIPNPYGVFMHDTNTKGVFGDDF 325 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 RF +SGCVRV+N+ + WLLKDTP W R +EE +++ K +A VPV++ YI+AW Sbjct: 326 RFISSGCVRVQNVREYITWLLKDTPGWDRQKVEEAIESGKRIDANIAQPVPVYWTYITAW 385 Query: 397 SPKDSIIQFRDDIYGLDNVHV-GIIPLPED 425 S D I+QFRDDIY D V+V I P Sbjct: 386 STPDGIVQFRDDIYKRDGVNVPSTIGAPTP 415 >gi|77463328|ref|YP_352832.1| hypothetical protein RSP_2774 [Rhodobacter sphaeroides 2.4.1] gi|126462184|ref|YP_001043298.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|77387746|gb|ABA78931.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] gi|126103848|gb|ABN76526.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides ATCC 17029] Length = 546 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 121/409 (29%), Positives = 192/409 (46%), Gaps = 13/409 (3%) Query: 19 ILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 +L L + +D I F A +DS P A+ Sbjct: 134 LLAWAHDLHGGALEPGKVDPGIKRAVKRLDPRSVLTAFEANPVHFLDSLAPRGPD--YAR 191 Query: 78 TEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +A + ++ GGW +P L G + LR+RL+ G L S S +DA Sbjct: 192 LMRARLDLEATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYLGRSTAAS--YDA 249 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 V +AV+ FQ HGL P G+ T+ A+NV + R++ + V L R + L G R++ Sbjct: 250 EVAAAVRSFQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALERERWL-SIDRGERHI 308 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ S ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ Sbjct: 309 WVNLADFSTRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKE 368 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LL+++P ++ +ID +G+EV V++N+ NF F RQ P NA+ K Sbjct: 369 YLPLLQRNPN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVK 426 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ N Y+HDTP LF+ VR + GC+R+ D LL + + Sbjct: 427 FMFPNQWNIYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTDDPEGLFQSHL 486 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + + + V+L VPVH VY +AW+ + +RDDIYG D V + Sbjct: 487 SSGRESVVRLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDALS 535 >gi|294677410|ref|YP_003578025.1| peptidoglycan-binding domain 1 protein [Rhodobacter capsulatus SB 1003] gi|294476230|gb|ADE85618.1| peptidoglycan-binding domain 1 protein [Rhodobacter capsulatus SB 1003] Length = 540 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 120/412 (29%), Positives = 193/412 (46%), Gaps = 14/412 (3%) Query: 19 ILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRFDNFLARVD--MGIDSDIPIISKETI 75 L + + +D I+ E + LA + P + Sbjct: 125 YLAWARDISSGALEPKKIDAGIVREIRRPDPQALLNGLLASPAPARFLRDLAPKSPR--Y 182 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A KA Q ++ GGW PE+ + L G+S V LR+RLI G L S +S + Sbjct: 183 AALVKARLDLQAEIATGGWGPEVAAKRLGPGDSGPGVIALRDRLIRMGYLRRS--VSATY 240 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + AV+ +Q+ G+ G+ TL +N + R++ + V L R++ + +G R Sbjct: 241 DGDLHRAVQTYQLDQGIKADGVAGEGTLARINRTPEERMKSILVALERLRWMNGLDLGKR 300 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++ VN+P + V++GK+ + +VG DR+TP + ++ NP W +PRSI Sbjct: 301 HIWVNLPDFTARIVDDGKMSFETVTVVGMNQGDRRTPEFSDVMEMMVINPSWSVPRSITV 360 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + +++++P +I ++D +G+ V E V++ + NF F RQ P NA+ Sbjct: 361 KEYLPMMQRNPG--AAGHIQLVDSRGRAVARESVNFAAYNARNFPFAMRQPPSNGNALGL 418 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F + N Y+HDTP LF VR + GC+RV DL LL + + Sbjct: 419 VKFLFPNPYNIYLHDTPSKSLFQKDVRAFSHGCIRVGRPFDLAYALLAAQEADPEGYFKS 478 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V+KT T VKL VPVH VY +A+ I++RDD+YG D + Sbjct: 479 VLKTGAETTVKLRDPVPVHLVYFTAFPNAQGRIEYRDDVYGRDAALFAALDK 530 >gi|146277082|ref|YP_001167241.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555323|gb|ABP69936.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides ATCC 17025] Length = 544 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 124/410 (30%), Positives = 193/410 (47%), Gaps = 13/410 (3%) Query: 19 ILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 +L L + +D I E F A ++ P A+ Sbjct: 132 LLAWAHDLRGGVLEPGKVDPGIKREVQRLDPRSVLTAFEADPRPFLNGLAPRTP--EYAR 189 Query: 78 TEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +A + ++ GGW ++P L G + V LR RL++ G L S S +DA Sbjct: 190 LMRARMELEARIAAGGWGLQVPAGKLRPGATGEGVLALRNRLMVMGYLGRSTVAS--YDA 247 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +E+AV+ FQ+ HGL P G+V TL AMNV + R+ + V L R + L G R++ Sbjct: 248 SIEAAVRAFQIDHGLTPDGVVGEGTLAAMNVSPETRLESVLVALERERWL-AIDRGERHI 306 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ S VE GKV + ++G+ D+++P + ++ NP W +PRSI K+ Sbjct: 307 WVNLTDFSARIVEGGKVTFETRSVIGKDSPDQRSPEFSDEMEYMVINPSWHVPRSITTKE 366 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTK 312 + LL+++P ++ +ID +G+ V V++N+ NF RQ P NA+ K Sbjct: 367 YLPLLQRNPNAAA--HLKLIDSRGQVVNRGSVNFNAYNARNFPYSMRQPPSDGNALGLVK 424 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F + N Y+HDTP LF+ VR + GC+R+ D LL + + Sbjct: 425 FMFPNPWNIYLHDTPSKSLFDREVRAFSHGCIRLAQPFDFAYALLARQSDDPEGLFQSHL 484 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +T K T V+L VPVH VY +AW+ + +R DIYG D V + + Sbjct: 485 RTGKETVVRLEEPVPVHLVYSTAWAGPTGRMSYRQDIYGRDGVILEALRA 534 >gi|297568521|ref|YP_003689865.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] gi|296924436|gb|ADH85246.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] Length = 557 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 130/379 (34%), Positives = 195/379 (51%), Gaps = 13/379 (3%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLR 115 + +P + + +A Y+ + +GGWP++P L LG+ V LR Sbjct: 177 GNPQAILTGLLPQ--QAGYRELRATLADYRRLAEQGGWPQVPGSTTLRLGDRDHRVVTLR 234 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 +RL S DL + FD +E+AV+ FQ RHGL G+V TL A+NVP+++RIRQ Sbjct: 235 QRLHRSRDLSGTAARGDVFDETLEAAVRSFQQRHGLLADGVVGRQTLAALNVPLEVRIRQ 294 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L++NL R + L ++ G R++LVN A LE +E+ + L V+ G R+TP R+ Sbjct: 295 LKLNLERWRWL-AEEFGRRHILVNTAANKLELIEDEQAILSMRVVTGTPYRRTPNFSDRV 353 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPE 292 ++ NPYW IP SI +D++ L+++P YL N I ++D V + VDW Sbjct: 354 TYLVLNPYWNIPASIAAQDILPELQENPDYLAQNGIKVLDGWNADSATVTPDTVDWERLR 413 Query: 293 ----PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + RQDPG N + K F + + Y+HDTP LF+ R +SGC+R+ Sbjct: 414 TRPQAFPYRLRQDPGPRNPLGRIKFMFPNAYSVYLHDTPARELFHRQTRNFSSGCIRLER 473 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVV--KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 ++L LL TP S + + +T V+L + VPVH VY +AW D +QFR Sbjct: 474 PLELAANLLAGTPLDSVGALRRALFDETSHDRHVRLPSPVPVHLVYWTAWVAPDGSVQFR 533 Query: 407 DDIYGLDNVHVGIIPLPED 425 DDIY D + + P Sbjct: 534 DDIYERDGLLAQALTTPPP 552 >gi|126737821|ref|ZP_01753551.1| peptidoglycan binding protein, putative [Roseobacter sp. SK209-2-6] gi|126721214|gb|EBA17918.1| peptidoglycan binding protein, putative [Roseobacter sp. SK209-2-6] Length = 537 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 110/411 (26%), Positives = 192/411 (46%), Gaps = 14/411 (3%) Query: 19 ILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIA 76 + L + + +D+ ++ + S + + A+ + + +P + Sbjct: 124 FVTYAAQLQTGMLQPATIDDGMVRKRRDSDGAELLNGMQQAQPFAYLRALVPASPQ--YR 181 Query: 77 QTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + ++ GGW +P L G+ +V LR RLI G L S S +D Sbjct: 182 ALLREKQRLEQLVEAGGWGTSVPASKLEPGDQGAAVVSLRNRLIKMGFLQRSA--SATYD 239 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +E AV+ FQ HGL+ G+ + TL+ +N PV R++ + V + R + L ++ G R+ Sbjct: 240 RNMERAVERFQSEHGLEVDGVAGTGTLKEINRPVQDRLKSVIVAMERERWLAPER-GERH 298 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQK 253 VLVN + V+NG V + ++G+ DR++P + ++ NP W +PRSII K Sbjct: 299 VLVNQTDFTARIVDNGDVTFETRSVIGKNTHDRRSPEFSDTMEHMVINPSWYVPRSIITK 358 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMAST 311 + + LR +P + +I + D +G+ V D++ NF +Q P NA+ Sbjct: 359 EYLPKLRNNPNAV--GHIQITDSRGRVVNRSTADFSQFTARNFPYAMKQPPSSRNALGLV 416 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP+ LF VR + GC+R+ + LL + + Sbjct: 417 KFMFPNKYNIYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTEDPKAFFHRI 476 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + K T V+L +VPVH +Y +A+ +FR D+YG D + Sbjct: 477 LSSGKETKVELEQQVPVHIIYRTAYVSNKGRAEFRRDVYGRDAKVWAALER 527 >gi|254512058|ref|ZP_05124125.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium KLH11] gi|221535769|gb|EEE38757.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium KLH11] Length = 533 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 120/412 (29%), Positives = 209/412 (50%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRF-DNFLARVDMGIDSDIPIISKETI 75 + + L + + +D ++ E ++ + + +P S++ I Sbjct: 119 VFVKYASDLQSGSVRPAQIDAGLVREVERRAADEHLRQLVSSEGAAYFRALMPQ-SRQYI 177 Query: 76 AQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A ++ A + ++++GGW +P+ L LG++ +V +LR RL+ G L P+ S + Sbjct: 178 ALMKQKKA-LEALIAQGGWGETVPVTKLELGDTGANVIKLRNRLVAMGYLKPTA--SPIY 234 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + AV+ FQ+ HGL+P G+ T+ +N PV R++ + V L R + L E++ G R Sbjct: 235 DDELLGAVQAFQIAHGLEPDGVAGKGTITEVNRPVSDRLKAVYVALERERWLPEER-GER 293 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++LVN S + V++G+V + ++G+ DR++P + ++ NP W +PRSII Sbjct: 294 HILVNQADFSAKIVDDGQVTFETRAVIGKNTHDRRSPEFSDVMEHMVINPSWYVPRSIIT 353 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + LR +P + +I + D +G++V VD+N NF F RQ P K NA+ Sbjct: 354 KEYLPKLRANPNAV--GHIQITDRQGRQVNRGAVDFNQFTARNFPFSMRQPPSKSNALGL 411 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP+ LF+ VR + GC+R+ + LL + Sbjct: 412 VKFMFPNKYNIYLHDTPQKSLFSREVRAFSHGCIRLAQPFEFAYALLAKQEENPKAFFHR 471 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V+ T K T VKL +VPVH +Y +A+ +Q+R D+Y D + Sbjct: 472 VLNTGKETTVKLDKKVPVHLIYRTAYIGPKGEVQYRRDVYDRDRKIWEALQK 523 >gi|221639179|ref|YP_002525441.1| peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides KD131] gi|221159960|gb|ACM00940.1| Peptidoglycan-binding domain 1 protein precursor [Rhodobacter sphaeroides KD131] Length = 518 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 121/409 (29%), Positives = 192/409 (46%), Gaps = 13/409 (3%) Query: 19 ILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 +L L + +D I F A +DS P A+ Sbjct: 106 LLAWAHDLHGGALEPGKVDPGIKRAVKRLDPRSVLTAFEANPVHFLDSLAPRGPD--YAR 163 Query: 78 TEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +A + ++ GGW +P L G + LR+RL+ G L S S +DA Sbjct: 164 LMRARLDLEATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYLGRSTAAS--YDA 221 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 V +AV+ FQ HGL P G+ T+ A+NV + R++ + V L R + L G R++ Sbjct: 222 EVAAAVRSFQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALERERWL-SIDRGERHI 280 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ S ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ Sbjct: 281 WVNLADFSTRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKE 340 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LL+++P ++ +ID +G+EV V++N+ NF F RQ P NA+ K Sbjct: 341 YLPLLQRNPN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVK 398 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ N Y+HDTP LF+ VR + GC+R+ D LL + + Sbjct: 399 FMFPNQWNIYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTDDPEGLFQSHL 458 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + + + V+L VPVH VY +AW+ + +RDDIYG D V + Sbjct: 459 SSGRESVVRLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDALS 507 >gi|307946606|ref|ZP_07661941.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770270|gb|EFO29496.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 437 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 163/394 (41%), Positives = 250/394 (63%), Gaps = 5/394 (1%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 S L + + D F + + + ++S P +S ET AI Y Sbjct: 35 SSASAESPLQALQQYNQRVEWQDDFQSTVQSL-KALESSAPTLSPETADYMGVAIDRYSR 93 Query: 88 ILS--RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 I+ G R L +G+ V LR+RL+ SGDL + G+S FD+YV++AV+ F Sbjct: 94 IVQLGGWGGVTSGGRALRIGSKDNRVVELRQRLMASGDLQQNAGMSSVFDSYVDAAVRRF 153 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q+RHGL P G+V ST+ A+NVP ++R+RQL+ NL+R++ + +G RYV+VNIPAA + Sbjct: 154 QLRHGLLPDGVVGESTIVALNVPANVRLRQLETNLVRLRSMSGF-LGDRYVMVNIPAAEI 212 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 EAVE G+V R T +VG++DRQTPIL+S+I + FNPYW +P SII+KD++ ++QDPQY Sbjct: 213 EAVEYGRVRSRHTAVVGKIDRQTPILNSKIYELNFNPYWTVPVSIIRKDLIPKMKQDPQY 272 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L N I + D KG E+ +++DWN+ E + FRQ+PG+IN++ S +I F++++ Y+HD Sbjct: 273 LAKNRIRIFDWKGNELAWQQIDWNTDEATKYQFRQEPGEINSLGSVRINFHNKHQVYLHD 332 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLAT 384 TP LF + RF +SGCVRV+N+ ++ WLL+ TP W R +++V++T V+L + Sbjct: 333 TPSKTLFGSDYRFHSSGCVRVQNVREMVTWLLQSTTPDWDRARVDQVIRTGAREDVRLKS 392 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +P++ YI+AW+ D +I FRDD+Y D ++ G Sbjct: 393 SIPLYLTYITAWANADGVIHFRDDVYNRDGLYNG 426 >gi|260433724|ref|ZP_05787695.1| peptidoglycan-binding domain 1 [Silicibacter lacuscaerulensis ITI-1157] gi|260417552|gb|EEX10811.1| peptidoglycan-binding domain 1 [Silicibacter lacuscaerulensis ITI-1157] Length = 535 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 117/410 (28%), Positives = 198/410 (48%), Gaps = 12/410 (2%) Query: 19 ILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 + + + S +D+ ++ + +D LA D + S + A Sbjct: 122 YIRYARDVQTGVLRPSDIDDGLVRQVQKRSGSDLLSALLAGTDGAAIERLAPQSSQYRAL 181 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + +A Q+++ GGW P +P G S V +LR+RL+ G L P+ S +D+ Sbjct: 182 LKHKLA-LQELMRHGGWGPTVPKGKYEPGASGAGVLKLRDRLVAMGFLKPTA--SPEYDS 238 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +E+AV+ FQ HGL+P G+ T+ +N R++ + V + R + L G R+V Sbjct: 239 AMEAAVRAFQRAHGLEPDGVAGEGTIAEINRSPTDRLKAVMVAMERERWLPA-DRGQRHV 297 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 LVN S + V++G V + ++G+ DR++P + ++ NP W +PRSII K+ Sbjct: 298 LVNQADFSAKIVDDGNVTFETRAVIGKNTHDRRSPEFSDEMEHMVINPSWYVPRSIITKE 357 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LR +P + ++ + D +G++V VD+N +F F RQ PG+ NA+ K Sbjct: 358 YLPKLRANPNAV--RHLEITDSRGRQVNRAAVDFNQFSARSFPFAMRQPPGQSNALGLVK 415 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ N Y+HDTP+ LF VR + GC+R+ + LL + ++ Sbjct: 416 FMFPNKYNIYLHDTPQKSLFAREVRAFSHGCIRLAQPFEFAYALLAPQEEDPKAFFHRIL 475 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 T K T V L VPVH +Y +A+ +Q+R D+YG D + Sbjct: 476 NTGKETKVDLEKPVPVHLIYRTAYIGPKGDVQYRRDVYGRDAKIWEALQK 525 >gi|159044168|ref|YP_001532962.1| hypothetical protein Dshi_1619 [Dinoroseobacter shibae DFL 12] gi|157911928|gb|ABV93361.1| hypothetical protein Dshi_1619 [Dinoroseobacter shibae DFL 12] Length = 536 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 118/412 (28%), Positives = 187/412 (45%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L + + S +D+ I + + I + P Sbjct: 122 VFLQYAQDVQSGALSPSRIDKTIVRSLPRRDRLAQITAFSKSNASRFIKALPPQ--SNGY 179 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ KA + + GGW P++ L G S V LR+RLI G L +S + Sbjct: 180 ARLMKAKLEMEKTIGAGGWGPKVTAAALKPGQSGPQVVALRDRLIRMGYLKR--TVSATY 237 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA ++ AV+ FQ HGL G+ TL +N R++ + V L R + + ++G R Sbjct: 238 DAALQVAVQRFQQDHGLAADGVAAKITLREINTEPTERLKSIIVGLERERW-MNFELGPR 296 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +++VNIP +ENGK + V+VG+ DR+TP ++ ++ NP W +PRSI Sbjct: 297 HIMVNIPDFHARVMENGKEVFATRVVVGKNTSDRRTPEFSDEMDHMVINPTWNVPRSIAT 356 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + L+++P + + ++D G+ V EVD+ +F F +Q P NA+ Sbjct: 357 KEYLPKLQENPN--AHSYMRLVDASGRTVNRAEVDFTQFNARSFPFDIKQPPSNRNALGL 414 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F +++N Y+HDTP LF R + GCVRV + D LL + Sbjct: 415 VKFMFPNKHNIYLHDTPAKSLFGRESRAYSHGCVRVADPFDFAYELLSKQERDPEGFFKT 474 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + K T V L VPVH VY +A++P Q+R D+YG D + Sbjct: 475 TLAKGKETWVYLDKPVPVHLVYQTAFAPAKGNTQYRRDVYGRDARLWDALAQ 526 >gi|189501015|ref|YP_001960485.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides BS1] gi|189496456|gb|ACE05004.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides BS1] Length = 566 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 114/382 (29%), Positives = 196/382 (51%), Gaps = 18/382 (4%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL--HLGNSSVS 110 + I P + + ++ +A Y+ + + GGW +P P +G Sbjct: 185 ALAGDSLAALIAQLRPKHP--SYSSLKEGLARYRRLAADGGWGTVPEGPTIKEIGQYDAR 242 Query: 111 VQRLRERLIISGDLDPSKGLSVAF-DAY------VESAVKLFQMRHGLDPSGMVDSSTLE 163 + LR RL ISG+++ + ++ D ++ AVK FQ RHGL G V TL Sbjct: 243 IPALRGRLEISGEIEQLSKVDTSYADEAMRYSVGLQEAVKKFQNRHGLQEDGEVGPKTLR 302 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A+NVPV+ R+ Q+++NL R + + QK+ Y+LVNI ++ E G S VIVG Sbjct: 303 ALNVPVEKRVEQIRINLERYRWFV-QKLEPTYLLVNIAGFNITYFEQGAFKWGSRVIVGE 361 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 +TP+ +++ ++FNP W +P I++K+ + +R+DP YL + + ++D G V Sbjct: 362 PFWKTPVFKAQMQYVIFNPSWNVPPGILRKEALPAIRKDPGYLSRHGLQVVDRNGNVVNP 421 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 V+W + ++ RQ PG NA+ K F +++ Y+HDTP LF+ R + GC Sbjct: 422 GSVNW-ASGAQSYRLRQPPGSRNALGRVKFMFPNKHLVYLHDTPGKHLFDKSSRAFSHGC 480 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 +R++N +DL LL WS + + V +T + L T++PV +Y++A + + + Sbjct: 481 IRLQNPLDLAELLL----GWSGEKVRQTVSAGRTRRINLPTKLPVFLLYLTAVAEGE-EV 535 Query: 404 QFRDDIYGLDNVHVGIIPLPED 425 QF++D+Y D + + P Sbjct: 536 QFKNDVYSRDAAVLQALNSPFP 557 >gi|86138266|ref|ZP_01056840.1| peptidoglycan binding protein, putative [Roseobacter sp. MED193] gi|85824791|gb|EAQ44992.1| peptidoglycan binding protein, putative [Roseobacter sp. MED193] Length = 541 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 112/410 (27%), Positives = 192/410 (46%), Gaps = 16/410 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLAR---VDMGIDSDIPIISKETI 75 + + + S +D + + R + + +P S + Sbjct: 128 FVNYAAMVQTGLLKPSSIDSGMVRERR-DHDGAAALAGMRDNQPFAYLRTLVPA-SPQYR 185 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A + + + + + GGW P +P L G++ +V LR RLI G ++ S S + Sbjct: 186 ALMREKL-RLEQLQAAGGWGPTVPGNKLEPGDTGTNVVALRNRLIALGYMERSATAS--Y 242 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D +E AV+ FQ HGL+ G+ TL+ +N PV R++ + + + R + L G R Sbjct: 243 DRDMERAVESFQADHGLEVDGVAGGGTLKEINRPVRDRLKSVIIAMERERWLTP-DRGER 301 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +VLVN + + ++NG V + ++G+ DR++P + ++ NP W +PRSII Sbjct: 302 HVLVNQTDFTAKIIDNGDVTFETRSVIGKNQSDRRSPEFSDVMEHLVINPSWHVPRSIIT 361 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + LR +P + +I + D +G+ V VD++ +F F RQ P NA+ Sbjct: 362 KEYLPQLRNNPNAVS--HIQITDSRGRVVNRGSVDFSQYTARSFPFAMRQPPSTRNALGL 419 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F +++N Y+HDTP+ LF VR + GC+R+ + LL Sbjct: 420 VKFIFPNKHNIYLHDTPQKSLFKREVRAFSHGCIRLAQPFEFAYALLAKQTEDPIDFFHR 479 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++K+ K T V L +VPVH +Y +A+ +FR D+YG D + Sbjct: 480 ILKSGKETKVDLEQQVPVHIIYRTAYVSNKGRAEFRRDVYGRDAKVWAAL 529 >gi|118588095|ref|ZP_01545505.1| hypothetical protein SIAM614_10978 [Stappia aggregata IAM 12614] gi|118439717|gb|EAV46348.1| hypothetical protein SIAM614_10978 [Stappia aggregata IAM 12614] Length = 535 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 124/410 (30%), Positives = 197/410 (48%), Gaps = 11/410 (2%) Query: 19 ILPMGLSLVEKPIHASVLDEIINE-SYHSIVNDRFDNFLARVD--MGIDSDIPIISKETI 75 L L + + +++ +N F+N VD ++S P + Sbjct: 125 FLRYATHLSSGRVQPNKVNKALNLFPDRPDPQTLFENAEQAVDFGAFLESLAPQT--DNY 182 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ ++ +A Y++ + GG+ ++P L G S + LR RL + + Sbjct: 183 ARLKRRLAQYREKAAAGGFAQVPEGEVLKPGMSDPRLTVLRTRLAEEDIPGAADHTGDIY 242 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + AVKLFQ HGL+ G++ T+ +N+P+ ++ Q+++N+ R + + G Sbjct: 243 DGALVEAVKLFQEYHGLETDGVIGKDTIAQLNIPIQEKLIQMELNMERRRWMP-DDPGQF 301 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 YV VN+ +L+ V +GK + V+VG+ TP+ R+ + NPYW +P SI K+ Sbjct: 302 YVFVNLADQNLKVVRDGKTIHTARVVVGKPYHATPVFSDRLEYVEINPYWNVPYSIATKE 361 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTK 312 + L+Q+P L +I + +G EV +V WNS NF FR QDPG NA+ K Sbjct: 362 YLPKLKQNPTALNGKSIRVFQ-EGNEVAPTQVAWNSYSGGNFPFRLRQDPGADNALGRIK 420 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F +R N Y+HDTP LF R + GC+RV + L LL D+ + H E + Sbjct: 421 FMFPNRFNIYIHDTPSKSLFARAERAFSHGCIRVSDPFALADVLLVDSDA-TPGHWEAIR 479 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T VK E+ VH Y++AW KD FR DIY D V + + Sbjct: 480 DGGERTVVKPKVEIDVHLTYLTAWMNKDGSTHFRKDIYNRDKVLLEALRT 529 >gi|188580628|ref|YP_001924073.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179344126|gb|ACB79538.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 434 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 151/365 (41%), Positives = 230/365 (63%), Gaps = 5/365 (1%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG 122 S PI+S +TIA TE + Y+ I+SRGGW + L +G+ +V +R+RLI++G Sbjct: 53 RSSTPILSPDTIAATEAMVEKYRAIVSRGGWQAVTGAAGLRVGSRGPAVAAVRQRLIVTG 112 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DLD + G + +D+YV + VK FQ RHGL +G + +T AMNVP D+R+RQL+ N++R Sbjct: 113 DLDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPADVRLRQLETNVIR 172 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ I FNP Sbjct: 173 LRSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNAKAVEINFNP 231 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD Sbjct: 232 TWTVPASIVRKDLIPKMQKDPNYLTDNKIRILSG-GQEISPRSVNWNSDEGTRYTYRQDS 290 Query: 303 GKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 291 GADFNSMGVVRINIPNPHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTP 350 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV-GII 420 W R H+E+ V++ + +L VPV++ YI+AW+ D +QFRDDIY D V+V I Sbjct: 351 GWDRAHVEQAVESGQRIDARLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNVPSTI 410 Query: 421 PLPED 425 P Sbjct: 411 EAPTP 415 >gi|254464823|ref|ZP_05078234.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium Y4I] gi|206685731|gb|EDZ46213.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium Y4I] Length = 542 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 111/408 (27%), Positives = 189/408 (46%), Gaps = 14/408 (3%) Query: 22 MGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD--MGIDSDIPIISKETIAQTE 79 L + S +D+ + H++ F + + S +P S + Sbjct: 132 YATDLQTGLLEPSRIDDGMVRKKHTVDGASFLAGIRDTQPFAYMRSLVPA-SPQYRGLMR 190 Query: 80 KAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + + + +L+ GGW P + + L G +V LR RL+ G L S S +DA + Sbjct: 191 EKL-RLEQVLAAGGWGPAVQAKTLEPGEQGPAVIALRNRLMAMGYLPRSAARS--YDAAM 247 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 AV+ FQ HGL+ G+ + TL +N PV R++ + + + R + L G R++LV Sbjct: 248 VQAVQSFQSDHGLETDGVAGAGTLAEVNKPVSDRLKSVIIAMERERWLSP-DRGERHILV 306 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 N + + V+NG V + ++G+ DR++P + ++ NP W +PRSII K+ + Sbjct: 307 NQTDFTAKIVDNGDVTFETRSVIGKNTDDRRSPEFSDEMEHMVINPSWYVPRSIITKEYL 366 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIE 314 LR +P + +I + D +G+ V D++ NF RQ P NA+ K Sbjct: 367 PKLRNNPNAV--GHIQITDRRGRVVNRSAADFSQYNARNFPYSMRQPPSSSNALGLVKFM 424 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F ++ N Y+HDTP+ LF VR + GC+R+ + LL + ++ + Sbjct: 425 FPNKYNIYLHDTPQKSLFAREVRAFSHGCIRLAQPFEFAYALLARQTEDPKAFFHRILNS 484 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T V+L +VPVH +Y +A +FR D+YG D + Sbjct: 485 GQETKVELEQKVPVHIIYRTAVVSSKGRAEFRRDVYGRDAKIWAALER 532 >gi|240137931|ref|YP_002962403.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens AM1] gi|240007900|gb|ACS39126.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens AM1] Length = 434 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 149/365 (40%), Positives = 228/365 (62%), Gaps = 5/365 (1%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG 122 S PI+S +TIA TE Y+ I+SRGGW + L +G+ +V +R+RLI++G Sbjct: 53 RSSTPILSPDTIAATESMAEKYRAIVSRGGWQNVSGAAGLRVGSRGPAVAAVRQRLIVTG 112 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DLD + G + +D+YV + VK FQ RHGL +G + +T AMNVP ++R+RQL+ N++R Sbjct: 113 DLDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPAEVRLRQLETNVIR 172 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I FNP Sbjct: 173 LRSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNP 231 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD Sbjct: 232 TWTVPASIVRKDLIPKMQKDPNYLTDNKIRILSG-GQEISPRSVNWNSDEGTRYTYRQDS 290 Query: 303 GKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 291 GADFNSMGVVRINIPNAHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTP 350 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV-GII 420 W R +E+ V++ + L VPV++ YI+AW+ D +QFRDDIY D V+V I Sbjct: 351 GWDRTRVEQAVESGQRIDATLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNVPSTI 410 Query: 421 PLPED 425 P Sbjct: 411 EAPTP 415 >gi|110596970|ref|ZP_01385260.1| Peptidoglycan-binding domain 1 [Chlorobium ferrooxidans DSM 13031] gi|110341657|gb|EAT60117.1| Peptidoglycan-binding domain 1 [Chlorobium ferrooxidans DSM 13031] Length = 560 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 127/420 (30%), Positives = 208/420 (49%), Gaps = 18/420 (4%) Query: 18 LILPMGLSLVEKPIHASVLDEIINES--------YHSIVNDRFDNFLARVDMGIDSDIPI 69 L+L + + +D + + + + F A I + Sbjct: 141 LLLSDAFLTLATHLRYGKVDPVSLDPNWNINDFHRSTAME--FRLQNAVTAERIAGVLAE 198 Query: 70 ISKE--TIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP 126 + + Q K + + + GGWP +P L G + V LR+RL++SGD+ Sbjct: 199 LRPQRPEYLQLRKGLIRDRALAKEGGWPVVPDLTGLKEGATDNRVLPLRKRLVVSGDMTA 258 Query: 127 -SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + S +D + AVK FQ R+G+ G+ +T AMN+PV+ RI Q+++NL R + Sbjct: 259 VANDTSRIYDRRMVEAVKRFQKRNGMVADGVPGPATFRAMNLPVERRIEQIRINLERCRW 318 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + + YVLVNI SL VE+G+ + VIVG+ R+TP+ + + I+FNP WV Sbjct: 319 FMN-DLEPTYVLVNIAEFSLRYVEHGRNRWGTRVIVGQPYRETPVFKADMQYIIFNPRWV 377 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPG 303 +P +I+ KD++ +R++ YL ++++D G V V+W+ NF +R Q G Sbjct: 378 VPPTILAKDVLPAIRKNSSYLSRKKLNILDRNGTVVNPASVNWSQYTGANFPYRLQQTAG 437 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 A+ K +R+ Y+HDTP LF R +SGC+RV N +L +L+D+ W Sbjct: 438 DHGALGRIKFMLPNRHTVYLHDTPTKDLFEKSSRTFSSGCIRVENPQELARLVLQDSLKW 497 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 SR I+ + T KT V L +PV +Y++A++ D I F DD+Y D+ + + P Sbjct: 498 SRERIQAAINTGKTATVYLPKRIPVFILYLTAFAEGD-EIVFLDDVYNRDSAVLKALDKP 556 >gi|163850806|ref|YP_001638849.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|218529626|ref|YP_002420442.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254560490|ref|YP_003067585.1| peptidoglycan-binding protein [Methylobacterium extorquens DM4] gi|163662411|gb|ABY29778.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] gi|218521929|gb|ACK82514.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254267768|emb|CAX23615.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens DM4] Length = 434 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 149/365 (40%), Positives = 228/365 (62%), Gaps = 5/365 (1%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG 122 S PI+S +TIA TE Y+ I+SRGGW + L +G+ +V +R+RLI++G Sbjct: 53 RSSTPILSPDTIAATESMAEKYRAIVSRGGWQNVSGAAGLRVGSRGPAVAAVRQRLIVTG 112 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DLD + G + +D+YV + VK FQ RHGL +G + +T AMNVP ++R+RQL+ N++R Sbjct: 113 DLDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPAEVRLRQLETNVIR 172 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I FNP Sbjct: 173 LRSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNP 231 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD Sbjct: 232 TWTVPASIVRKDLIPKMQKDPNYLTDNKIRILSG-GQEISPRSVNWNSDEGTRYTYRQDS 290 Query: 303 GKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 291 GADFNSMGVVRINIPNAHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTP 350 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV-GII 420 W R +E+ V++ + L VPV++ YI+AW+ D +QFRDDIY D V+V I Sbjct: 351 GWDRTRVEQAVESGQRIDATLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNVPSTI 410 Query: 421 PLPED 425 P Sbjct: 411 EAPTP 415 >gi|126736346|ref|ZP_01752088.1| peptidoglycan binding domain protein, putative [Roseobacter sp. CCS2] gi|126714167|gb|EBA11036.1| peptidoglycan binding domain protein, putative [Roseobacter sp. CCS2] Length = 536 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 115/411 (27%), Positives = 182/411 (44%), Gaps = 14/411 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L + + S +D I+ S ++ + + + P S Sbjct: 123 FLDYARDIQTGLLTPSRIDSAIHRQVPVRSRLSTMRAFAQSNPSAFMRALAP--SAPEYT 180 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + ++ +GGW P +P R G+S V LR RLI G L + +D Sbjct: 181 RLMSEKMRMERLIGQGGWGPTVPGRKYERGDSGAGVVALRNRLIAMGYLPRTNT--QTYD 238 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + A+ FQ HGL G + TL+ +NV + R+R + V + R + + + G R+ Sbjct: 239 DAIYGAITRFQQAHGLAIDGTAGAGTLDEINVQPEARLRSIIVAMERERWI-NRPRGERH 297 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ--TPILHSRINRIMFNPYWVIPRSIIQK 253 V VNI + + +NG + +VG DR TP + ++ NP W +PRSII K Sbjct: 298 VWVNITDFTAKIYDNGVETFSTRSVVGARDRDRVTPEFSDVMEFMVINPSWYVPRSIITK 357 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMAST 311 + + L+ +P + N+ + D G+ V D++ P NF FR+ P + NA+ Sbjct: 358 EFLPQLQANPNAV--RNLVITDRNGRVVDRSTADFSQYTPTNFPYSFREPPSQGNALGLV 415 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F +R N Y+HDTP LF R + GCVR+ + D LL + Sbjct: 416 KFMFPNRYNIYLHDTPSKSLFGRETRAYSHGCVRLADPFDFAYALLARQVGNPEEVFQGH 475 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +++ + V L T VPVH VY +A P D +QFR D+YG D + Sbjct: 476 LRSGRERRVDLETPVPVHLVYRTAIVPADGKVQFRRDVYGRDGRIWNALAR 526 >gi|189347548|ref|YP_001944077.1| Peptidoglycan-binding domain 1 protein [Chlorobium limicola DSM 245] gi|189341695|gb|ACD91098.1| Peptidoglycan-binding domain 1 protein [Chlorobium limicola DSM 245] Length = 560 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 121/380 (31%), Positives = 195/380 (51%), Gaps = 8/380 (2%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSV 109 + R +D P S A+ +K +A Y+ I GGW ++P G Sbjct: 177 QNALAAGRPKAALDELRPKHS--GYAELKKGLARYRVIARAGGWQKVPEGDSFREGVRDS 234 Query: 110 SVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V LR+RL SGDL S + A + +AVK FQ R+GL G+ ++T+ +N+ Sbjct: 235 RVPLLRKRLQQSGDLPGGVTDSSKVYTAAMANAVKRFQKRNGLSVDGVAGTATIGEINIS 294 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 R+ Q+++NL R + + + YVLVNI +L+ +ENG+ + VIVG+ R+T Sbjct: 295 AAERVDQIRLNLERYRWFVN-DLEPTYVLVNIAGFTLQYIENGRYRWGTRVIVGQPYRET 353 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+ + + I+FNP WVIP +I+ +D + +R YL + +ID +G+ V V+W Sbjct: 354 PVFKADMQYIVFNPQWVIPPTILAEDALPAIRNSRSYLDRKKLRVIDSRGRVVDPASVNW 413 Query: 289 NSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + NF +R Q G A+ K +++ Y+HDTP LF R +SGC+RV Sbjct: 414 SGYSAANFPYRLQQTAGDHGALGRIKFMMPNKHVIYLHDTPTKNLFEKSERTFSSGCIRV 473 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 N +DL +L+D+ W++ I+ + T KT+ V L +PV +Y++A + + IQFR Sbjct: 474 ENPLDLAQLVLQDSVKWNKTSIDSTIGTGKTSTVNLPKRIPVFLLYLTAIAEGE-EIQFR 532 Query: 407 DDIYGLDNVHVGIIPLPEDH 426 D+Y D+ + P Sbjct: 533 RDVYNRDDRLRKALDSPVPQ 552 >gi|120555804|ref|YP_960155.1| peptidoglycan binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325653|gb|ABM19968.1| Peptidoglycan-binding domain 1 protein [Marinobacter aquaeolei VT8] Length = 560 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 123/420 (29%), Positives = 197/420 (46%), Gaps = 17/420 (4%) Query: 18 LILPMGLSLVEKPIHASVLD------EIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS 71 L+L L+ +H ++ E + LA + Sbjct: 122 LVLSDAFLLLASHLHHGKVNPTTIHAEWTANRQQREMQSVLSEALASGTVYTTLQDLKPR 181 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLD---PS 127 Q + +++S WP + P + G++ + +R RL + GDL P Sbjct: 182 SAAYHQLVQRRKALGELISA-DWPAIVSGPSIRPGDTDNRIPDIRRRLALLGDLSGDSPE 240 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 +D + +A+ LFQ RHGL+P G+V TL A+N+ RI +L NL R + L Sbjct: 241 ASNHQHYDDALATAIPLFQARHGLEPDGIVGRDTLTALNLLPLERIYRLDANLERWRWLP 300 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G YV+VNI L VE+G+ R VIVGR RQTP+ RI ++FNP W +P Sbjct: 301 -ESLGETYVVVNIAGFELVLVESGEQVHRQRVIVGRPYRQTPVFSDRIRYLVFNPTWTVP 359 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSP--EPPNFIFRQDP 302 R ++ +D + ++R DP+YL+ + G EV E+DW + Q P Sbjct: 360 RKLMIEDQLPIIRSDPEYLERLGFKVFRGWGANQSEVDPAEIDWTELSKNNFPYQLIQQP 419 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G NA+ K F ++ + Y+HDTP LF+ + R +SGC+R+ +L LL +T Sbjct: 420 GPQNALGQVKFMFPNQYDIYLHDTPAQSLFSRLERTLSSGCIRLERPFELAERLLANTNG 479 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W++ IE+ + T + V L+ VPV+ Y + W ++QFR+D+Y D + + Sbjct: 480 WNKKRIEQTLATAEPATVVLSEPVPVYLQYWTTWIDPAGVLQFRNDVYDRDRRLLQALRA 539 >gi|163736471|ref|ZP_02143890.1| Peptidoglycan-binding domain 1 [Phaeobacter gallaeciensis BS107] gi|161390341|gb|EDQ14691.1| Peptidoglycan-binding domain 1 [Phaeobacter gallaeciensis BS107] Length = 544 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 109/411 (26%), Positives = 190/411 (46%), Gaps = 14/411 (3%) Query: 19 ILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRFDNFLARVD-MGIDSDIPIISKETIA 76 ++ L + +D+ I+ + + + + S P ++ Sbjct: 131 LVGYASDLQTGLLQPRQIDDGIVRKKHQPDFAAYLAGIRDQAPVAYLRSLAPQSAQ--YQ 188 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + + GGW P++ + L G+S +V LR RLI G L S +D Sbjct: 189 ALLREKMRLEALQRAGGWGPQVAAKKLESGDSGPAVIALRNRLIAMGYLPRSAAR--RYD 246 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +E AV+ FQ HGL G+ TL +N PV R++ + V + R + L ++ G R+ Sbjct: 247 GALERAVQAFQSDHGLTADGVAGGGTLAEINKPVSARLKSVLVAMERERWLTPER-GTRH 305 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 VLVN + + ++NG+V + ++G+ DR++P + ++ NP W +PRSI+ K Sbjct: 306 VLVNQTDFTAKIIDNGEVTFVTRSVIGKDNADRRSPEFSDEMEHMVINPSWYVPRSIVTK 365 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 + + LR +P + +I + D +G++V D++ F F RQ P + NA+ Sbjct: 366 EYLPKLRNNPNAV--GHIEITDSRGRKVNRATADFSKYTARTFPFAMRQPPSRKNALGLV 423 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP+ LF VR + GC+R+ + LL + + Sbjct: 424 KFMFPNKYNIYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTENPKDFFHRI 483 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + K T V L +VPVH +Y +A+ ++R DIYG D + Sbjct: 484 LNSGKETKVVLDQKVPVHIIYRTAFVTPKGQPEYRRDIYGRDAKVWAALER 534 >gi|163793880|ref|ZP_02187854.1| Peptidoglycan-binding domain 1 protein [alpha proteobacterium BAL199] gi|159180991|gb|EDP65508.1| Peptidoglycan-binding domain 1 protein [alpha proteobacterium BAL199] Length = 515 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 197/413 (47%), Gaps = 13/413 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID---SDIPIISKETI 75 +L L + D + + H + + + +A D + P S Sbjct: 103 LLRFLTDLRSGRLAPHEADPDLFQERHLVDGKQLLSQVADADDPVRAIEQAGP--SNPIY 160 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + +A Y+ + GGWP +P L G V +R RL++S L + + Sbjct: 161 HRLRRLLANYRGLAVHGGWPSVPVGDALKPGMRDPRVAAIRTRLMLSESLTLTSDDPEFY 220 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D A++ FQ RHGL+ G+V + TL A+NVP++ RI Q+ VN+ R + + ++ G Sbjct: 221 DDGFGLAMRGFQRRHGLEDDGVVGTRTLAALNVPIEHRIEQIVVNMERFRWMPDE-FGDD 279 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V VN+ L+ V G V + V+VGR R+TP+ RI + NP W +P I +D Sbjct: 280 HVFVNLADFMLDYVRRGLVAMSMRVVVGRQYRETPVFSDRIRYLELNPTWTVPAKIASED 339 Query: 255 MMALLRQDPQYLKDNNIHMIDE---KGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 +++ +R +P YL + + VDW+S F + RQ PG+ NA+ Sbjct: 340 LLSKIRANPSYLSSAGFEVFAGSRDNATLIDPASVDWSSLAKGRFPYTLRQQPGRQNALG 399 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F +R + Y+HDTP LF VR +SGC+R+ +DL LL I Sbjct: 400 RVKFMFPNRFDIYLHDTPARELFRRSVRTFSSGCIRLEKPLDLASRLLVAD-GQDPDRIG 458 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V+++ KTT + L V VH Y++AW + ++FRDD+YG D + + L Sbjct: 459 SVLESAKTTRINLREPVAVHLTYLTAWVGEGGTVEFRDDVYGRDALLAKALGL 511 >gi|220925145|ref|YP_002500447.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219949752|gb|ACL60144.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 426 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 154/365 (42%), Positives = 235/365 (64%), Gaps = 4/365 (1%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 + A S+ PI+S +T+A TE+ I Y+DI++RGGW + L +G S +V Sbjct: 38 NYDSASTMRVQRSNTPILSPQTLAATEQMIERYRDIVARGGWQPVSGAERLRVGARSPAV 97 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 LR+RLI SGDLDP+ G S +D+YVE+ V+ FQ RHGL+ +G ++ +T++AMNVP D+ Sbjct: 98 VALRQRLITSGDLDPAAGSSPVYDSYVEAGVRRFQARHGLNQTGAMNITTVQAMNVPADV 157 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R+RQL++N +R++ +G RYV+VNIPAA +E VE V R VG++DRQ+PI+ Sbjct: 158 RLRQLELNAVRLRSY-SGNLGARYVIVNIPAALVETVEGDHVATRHAAGVGKIDRQSPIM 216 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 +++I + FNPYW +P SII+KD++ ++++P YL DN I + D +E+ +V+W S Sbjct: 217 NAKIQEVNFNPYWTVPASIIKKDLIPKMQKEPNYLTDNKIRIFDGD-REIPPSQVNWRSD 275 Query: 292 EPPNFIFRQDPGKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 E + FRQDPG N+M +I + + YMHDTP +F + RF +SGCVRV+N+ Sbjct: 276 EATRYRFRQDPGVDLNSMGFVRINIPNPHGVYMHDTPAKGIFGDDFRFVSSGCVRVQNVR 335 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 D W+L+ TP + IE ++++ + + +PV++ YI+AWS D ++QFRDDIY Sbjct: 336 DYVAWILQGTPQGNPETIEAIIQSGQRVDARPVAPIPVYWTYITAWSTPDGLVQFRDDIY 395 Query: 411 GLDNV 415 D V Sbjct: 396 KRDGV 400 >gi|163743284|ref|ZP_02150665.1| peptidoglycan binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161383472|gb|EDQ07860.1| peptidoglycan binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 544 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 109/411 (26%), Positives = 190/411 (46%), Gaps = 14/411 (3%) Query: 19 ILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRFDNFLARVD-MGIDSDIPIISKETIA 76 ++ L + +D+ I+ + + + + S P ++ Sbjct: 131 LVGYASDLQTGLLQPRQIDDGIVRKKHQPDFAAYLAGIRDQAPVAYLRSLAPQSAQ--YQ 188 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + + GGW P++ + L G+S +V LR RLI G L S +D Sbjct: 189 ALLREKMRLESLQRAGGWGPQVAAKKLESGDSGPAVIALRNRLIAMGYLPRSAAR--RYD 246 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +E AV+ FQ HGL G+ TL +N PV R++ + V + R + L ++ G R+ Sbjct: 247 GALERAVQAFQSDHGLTADGVAGGGTLAEINKPVSARLKSVLVAMERERWLTPER-GTRH 305 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 VLVN + + ++NG+V + ++G+ DR++P + ++ NP W +PRSI+ K Sbjct: 306 VLVNQTDFTAKIIDNGEVTFVTRSVIGKDNADRRSPEFSDEMEHMVINPSWYVPRSIVTK 365 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 + + LR +P + +I + D +G++V D++ F F RQ P + NA+ Sbjct: 366 EYLPKLRNNPNAV--GHIEITDSRGRKVNRATADFSKYTARTFPFAMRQPPSRKNALGLV 423 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP+ LF VR + GC+R+ + LL + + Sbjct: 424 KFMFPNKYNIYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTENPKDFFHRI 483 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + K T V L +VPVH +Y +A+ ++R DIYG D + Sbjct: 484 LNSGKETKVVLDQKVPVHIIYRTAFVTPKGQPEYRRDIYGRDAKVWAALER 534 >gi|254476277|ref|ZP_05089663.1| peptidoglycan-binding domain 1 [Ruegeria sp. R11] gi|214030520|gb|EEB71355.1| peptidoglycan-binding domain 1 [Ruegeria sp. R11] Length = 539 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 107/411 (26%), Positives = 194/411 (47%), Gaps = 14/411 (3%) Query: 19 ILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRFDNFLARVD-MGIDSDIPIISKETIA 76 ++ L + +DE I+ + + + + S P + Sbjct: 126 LVNYAADLQTGLLEPRRIDEGIVRKKHQPDFASYLTGIRDQAPVAFLRSLAPQNPQ--YQ 183 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + + + GGW P + + L G+ +V LR RLI G L+ S S+ +D Sbjct: 184 ALLREKMRLEALQAAGGWGPTVSAKKLERGDQGGAVIALRNRLIEMGYLERSA--SLRYD 241 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +E AV+ FQ HGL+ G+ + T+ +N PV R++ + V + R + L G R+ Sbjct: 242 TALEGAVQKFQAAHGLEADGVAGAGTISEINKPVSARLKSVLVAMERERWLTP-DRGERH 300 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +LVN + + ++NG+V ++ ++G+ DR++P + ++ NP W +PRSII K Sbjct: 301 ILVNQTDFTAKIIDNGEVTFQTRSVIGKDHSDRRSPEFSDVMEHMVINPSWYVPRSIITK 360 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMAST 311 + + L+ +P + +I + D +G++V D++ NF RQ P + NA+ Sbjct: 361 EYLPKLKANPNAV--GHIEITDSRGRKVNRSTADFSQYTARNFPYAMRQPPSRKNALGLV 418 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP+ LF VR + GC+R+ + LL + + + Sbjct: 419 KFMFPNKYNIYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLAKQTENPKQFFDRI 478 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + K T V L +VPVH +Y +A+ + ++R D+YG D + Sbjct: 479 LSSGKETKVDLEQQVPVHLIYRTAFVTPEGRAEYRRDVYGRDAKVWAALER 529 >gi|149915292|ref|ZP_01903820.1| peptidoglycan binding domain protein, putative [Roseobacter sp. AzwK-3b] gi|149811013|gb|EDM70852.1| peptidoglycan binding domain protein, putative [Roseobacter sp. AzwK-3b] Length = 536 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 110/412 (26%), Positives = 195/412 (47%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L + + + +D+ I Y ++ + + + P Sbjct: 122 VFLRLSRDMQTGLLVPGQVDDDIKRQVPYRERLSYLTNFMQSSPSAFFRALPPQ--SNEY 179 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ K + + RGGW P + + G S +V LR+RL+ G LD S + Sbjct: 180 ARLMKEKLRLERLADRGGWGPTVSAESVKPGQSGAAVTALRDRLVAMGFLDRSAT--QLY 237 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + AV+ FQ+ HGL P G+ TL +NVPV R++ L V + R + + +G R Sbjct: 238 DETMLHAVQRFQLAHGLTPDGVAGPGTLAEINVPVQERLKSLIVAMERERWINMA-LGER 296 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++LVN+ +++G V + V++G+ DR++P ++ ++ NP W +PRSI Sbjct: 297 HILVNLTDFHARIIDDGAVSFETRVVIGKNTGDRRSPEFSDEMDHMVINPTWHVPRSIAV 356 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 + + ++++P + ++ + + +G++V V++ + NF F +Q P + NA+ Sbjct: 357 GEYLPKMKRNPNAVS--HLKLYNNRGQQVSRGAVNFAAYNASNFPFSIKQPPSQSNALGL 414 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF VR + GCVRV+ +L LL T + Sbjct: 415 VKFMFPNKYNIYLHDTPAKDLFGREVRAYSHGCVRVQKPFELAYELLSKQETDPKRTFHS 474 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 ++ T + V L VPVH +Y +A++ +Q+R DIYG D + Sbjct: 475 ILDTGREKRVNLEQVVPVHIIYRTAFTQAKGPVQYRRDIYGRDGRIWDALDK 526 >gi|308273623|emb|CBX30225.1| hypothetical protein N47_D30340 [uncultured Desulfobacterium sp.] Length = 564 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 119/430 (27%), Positives = 203/430 (47%), Gaps = 16/430 (3%) Query: 13 CFFVYLILPMGLSLVEKPIHASVL-------DEIINESYHSIVNDRFDNFLARVDMGIDS 65 + L+L L + A + D I + +V D Sbjct: 134 MVELELLLSDAFFLYASHLTAGRVNPENIRTDWTIKTKHLDLVPILLDALAKGNISYALE 193 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDL 124 + S + + + A Y+ GGWP++P P + G+ + L RL ISGDL Sbjct: 194 KVNQQSPD-YQRLKIASQSYKKFSENGGWPQIPAGPKMKKGDRGARIAILHSRLQISGDL 252 Query: 125 D-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 K F +E AV FQ RHGL G+V +TL +NV R +Q+ VN+ R+ Sbjct: 253 SKTDKKDPGVFGDILEKAVLRFQSRHGLTEDGIVGHATLYELNVSALARFKQIMVNMERL 312 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L ++ G RY+ VNI L V+ L+ V+VG+ RQTP+ ++ ++ NP+ Sbjct: 313 RWL-QRDFGPRYLFVNIADFKLSVVDENASILKMRVVVGKDYRQTPVFEGKMTYLVINPF 371 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPN--FIF 298 W IP + ++D++ L+++D + +K I + + +E+ V+W N + Sbjct: 372 WTIPPKLAEEDLLPLIKEDIEVIKRKKIRIYESWKENAREIDPGSVNWKMVNADNFSYKL 431 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q+PG +NA+ K F ++ + Y+HDTP LF+ R +SGC+R+ ++L +LL Sbjct: 432 VQEPGPLNALGRIKFIFPNKFDIYLHDTPARNLFSREKRNFSSGCIRIEKPLELATYLLH 491 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 P W++ + +V+ + +T V ++ + V +Y +AW + I+QFR+DIY D Sbjct: 492 GNPNWTKQKLLDVIDSHETQIVGISNPIAVKILYFTAWVDEQGIVQFRNDIYQRDKKLAK 551 Query: 419 IIPLPEDHPI 428 + I Sbjct: 552 ALEEKPPQDI 561 >gi|194337477|ref|YP_002019271.1| Peptidoglycan-binding domain 1 protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309954|gb|ACF44654.1| Peptidoglycan-binding domain 1 protein [Pelodictyon phaeoclathratiforme BU-1] Length = 549 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 132/425 (31%), Positives = 213/425 (50%), Gaps = 14/425 (3%) Query: 13 CFFVYL---ILPMGLSLVEKPIHASVLDEIINESY---HSIVNDRFDNFLARVDMG-IDS 65 C+ V + +L + + L + LD N SIV ++ + +A + Sbjct: 120 CYDVLMTNSLLSLAVHLRYGRVDPETLDTHWNSRQTRNGSIVENKLHHAIASGHIADALK 179 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDL 124 ++ + + Q K + Y+ I GGWP L P L G V LR+RL +SGD+ Sbjct: 180 ELRLQHPK-YEQLRKGLVRYRTIARAGGWPVLAEGPKLQEGARGKRVMLLRQRLRVSGDI 238 Query: 125 DP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + S ++ V AVK FQ R+G+ G+V ++TL MN+PV+ RI ++++NL R Sbjct: 239 AVLNTDTSTVYNREVVEAVKHFQKRNGMVADGVVGATTLRVMNIPVERRIDEIRLNLERY 298 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + ++VNIP +L+ +ENG+ + VI G+ R+TP+ + + ++ NP Sbjct: 299 RWFL-RDLEPTAIMVNIPRFTLQYIENGQDKWETRVITGKPPRETPLFKADMQYVILNPR 357 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QD 301 WVIP +I+ KD + LR+ YL + +ID G + V+W+ NF +R Q Sbjct: 358 WVIPPTILAKDALPALRKSNSYLNRKRLTIIDRNGAVIDPVSVNWSQYSGGNFPYRLQQS 417 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G A+ K +R Y+HDTP LF R +SGCVRV N +DL +L+D+ Sbjct: 418 SGDHGALGRIKFLLPNRYIVYLHDTPNKELFAASKRLFSSGCVRVENPVDLATLVLQDSV 477 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 WS+ I +K+ KT V L +PV+ +Y++ D + FRDD+Y D + + Sbjct: 478 RWSKVKILSAIKSGKTKTVLLPKRIPVYLLYLTVTPEGD-ELFFRDDVYNRDERLLKALN 536 Query: 422 LPEDH 426 P Sbjct: 537 KPLPQ 541 >gi|78186201|ref|YP_374244.1| hypothetical protein Plut_0313 [Chlorobium luteolum DSM 273] gi|78166103|gb|ABB23201.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 546 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 133/428 (31%), Positives = 205/428 (47%), Gaps = 27/428 (6%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLAR--------------VDMGI 63 L+L + + +D + F R + Sbjct: 119 LLLSDAFLTLAAHLRYGKVD-----PLRLDPHWNFPGSGVRSAIGPGMHREPGEEGPAAL 173 Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG 122 + + + +A+A Y+ I + GGWP LP P L G S V LR RL I G Sbjct: 174 LQEFRLRHPK-YRMLRRALARYRAIAASGGWPVLPPGPALTPGMQSSRVPALRRRLAIVG 232 Query: 123 DLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 DL+ + S FD + AV+ FQ RHG+ G+ T AMNVP +R+ L+VNL Sbjct: 233 DLESTLIRDSSTVFDPELSLAVRRFQERHGITVDGVPGLETRSAMNVPASVRVECLKVNL 292 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + L + YVLVNI SL+ VE+G+ + VIVGR R+TP+ + + ++F Sbjct: 293 ERYRWFLS-DLDSTYVLVNIAGFSLQYVEDGEFRWATRVIVGRPYRKTPVFKADMKAVVF 351 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR- 299 NP WV+P +I+++D + +R+DP +L+ N+I +ID G+ V VDW++ F +R Sbjct: 352 NPRWVVPPTILKQDALPAIRKDPGWLRANHISVIDRNGRTVDPISVDWSARSAATFPYRL 411 Query: 300 -QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q G A+ K + Y+HDTP+ LF R +SGC+RV N L +L Sbjct: 412 QQAAGDDGALGRLKFLLPNPYLVYLHDTPKRELFLQSARTFSSGCIRVENPRRLAQLVLA 471 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 D+ WS I+ + T +T + L VPV +Y++A + + + FR+D+Y D + Sbjct: 472 DSVRWSPEQIDAQIDTGRTRTISLPKPVPVLILYLAAMAEGE-RVLFRNDVYRRDTAVLQ 530 Query: 419 IIPLPEDH 426 + P H Sbjct: 531 ALQAPLPH 538 >gi|170741295|ref|YP_001769950.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195569|gb|ACA17516.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 426 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 154/377 (40%), Positives = 239/377 (63%), Gaps = 6/377 (1%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-I 99 + +D+ S+ PI+S +T+A TE+ I Y+DI++RGGW + Sbjct: 28 RGLAQAEWAQNYDSAATMRVQ--RSNTPILSPQTLAATEQMIERYRDIVARGGWQPVSGA 85 Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G S +V LR+RLI+SGDLDP+ G S +D+YVE+ V+ FQ RHGL+ +G ++ Sbjct: 86 DRLRVGTKSPAVVALRQRLIVSGDLDPAAGSSPIYDSYVEAGVRRFQARHGLNETGAMNL 145 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 +T++AMNVP D+R+RQL++N +R++ +G RYV+VNIPAA +E VE V R Sbjct: 146 TTVQAMNVPADVRLRQLELNAVRLRSY-SGNLGARYVIVNIPAALVETVEGDHVATRHAA 204 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 VG++DRQ+PI++++I + FNPYW +P SII+KD++ ++++P YL DN I + D + + Sbjct: 205 GVGKIDRQSPIMNAKIQEVNFNPYWTVPASIIKKDLIPKMQKEPNYLTDNKIRIFDGE-R 263 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 E+ +V+W S E + FRQDPG N+M +I + + YMHDTP +F + RF Sbjct: 264 EIAPSQVNWRSDEATRYRFRQDPGVDLNSMGFVRINIPNPHGVYMHDTPAKGIFGDDFRF 323 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV+N+ D W+L+ TP + IE ++++ + + +PV++ YI+AWS Sbjct: 324 VSSGCVRVQNVRDYVAWILQGTPQGNPETIEAIIQSGQRVDARPLAPIPVYWTYITAWST 383 Query: 399 KDSIIQFRDDIYGLDNV 415 D ++QFRDDIY D V Sbjct: 384 PDGLVQFRDDIYKRDGV 400 >gi|56696802|ref|YP_167164.1| peptidoglycan binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678539|gb|AAV95205.1| peptidoglycan binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 537 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 113/408 (27%), Positives = 187/408 (45%), Gaps = 14/408 (3%) Query: 22 MGLSLVEKPIHASVLDE-IINESYHSIVNDRF-DNFLARVDMGIDSDIPIISKETIAQTE 79 L + S +D+ ++ + A + P S+ Sbjct: 127 FARDLQTGLLTPSQIDDGMVRVVERRGAEAYLSELQAAEPGRYMRMLAPNTSQ--YRALL 184 Query: 80 KAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 K + L+ GGW P + L G+ V LR RLI G +D S S +D + Sbjct: 185 KLKLDLEQALATGGWGPTVAGGKLAPGDGGPRVVALRNRLIAMGFMDRSAVAS--YDGTL 242 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 + AV+ FQ+ HGL+ G+ TL+ +N V R++ + V L R + L + G R++LV Sbjct: 243 QKAVQAFQLAHGLEADGVAGDGTLDEINKSVADRLKSVIVALERERWLP-RDRGERHILV 301 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 N + + V++G+V + ++G+ DR++P + ++ NP W +PRSII K+ + Sbjct: 302 NQTDFTAKIVDHGRVTFETRSVIGKNVSDRRSPEFSDEMEHMVINPSWYVPRSIITKEYL 361 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 LR +P + ++ + D +G++V VD++ +F F RQ PGK NA+ K Sbjct: 362 PKLRANPNAV--RHLEITDSRGRQVNRGAVDFSQFSSRSFPFAMRQPPGKSNALGLVKFM 419 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F ++ N Y+HDTP+ LF VR + GC+R+ + LL + V+ T Sbjct: 420 FPNKYNIYLHDTPQKDLFAREVRAYSHGCIRLAQPFEFAYALLALQEADPKSFFHNVLNT 479 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T V L VPVH +Y +A +R D+YG D + Sbjct: 480 GRETKVDLERHVPVHIIYRTAVVDDRGQAGYRRDVYGRDAKIWEALSR 527 >gi|259419164|ref|ZP_05743081.1| peptidoglycan-binding domain 1 [Silicibacter sp. TrichCH4B] gi|259345386|gb|EEW57240.1| peptidoglycan-binding domain 1 [Silicibacter sp. TrichCH4B] Length = 540 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 116/418 (27%), Positives = 201/418 (48%), Gaps = 20/418 (4%) Query: 18 LILPMGLSLVEKPIHASVLDE-------IINESYHSIVNDRFDNFL-ARVDMGIDSDIPI 69 + L L + ++D I+ + + + R + +P Sbjct: 120 VALSRALVDYATDLQTGLIDAPARIDDGIVRKKHQVDAASFLEGISKDRPAAFLQKLVPA 179 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 + + + +++ GGW +P+R + G+S +V LR+RL+ G L P+ Sbjct: 180 SPQ--YRALLREKMRLETLMNAGGWGATVPVRKMEPGDSGPNVIALRDRLVSMGYLQPTA 237 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 +D +E AV+ FQ HGL+ G+ TL +N PV RI+ + V + R + L Sbjct: 238 TR--TYDLSLEDAVRRFQGEHGLEVDGVAGEGTLTEINRPVTDRIKSVLVAMERERWLTP 295 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVI 246 ++ G R++LVN+ S + V++G++ + ++G R DR+TP ++ ++ NP W + Sbjct: 296 ER-GPRHILVNLTDFSAKIVDDGEISFETRSVIGSNRSDRRTPEFSDEMDHMVINPSWYV 354 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGK 304 PRSI+ K+ + L+ +P + I + D +G+ V VD++ +F F RQ P Sbjct: 355 PRSIVTKEYLPKLKNNPN--AHSYIEITDNRGRVVNRNSVDFSQFTARSFPFAMRQPPSS 412 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F ++ N Y+HDTP+ LF VR + GC+R++ D LL Sbjct: 413 RNALGLVKFMFPNKYNIYLHDTPQKSLFGREVRAYSHGCIRLQKPFDFAYALLAPQTENP 472 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + V+ + K T V L T+VPVH +Y +A+ +D +FR DIYG D + Sbjct: 473 KDYFHRVLNSGKETKVSLETKVPVHLIYRTAFVSQDGRAEFRRDIYGRDAKIWSALER 530 >gi|99081059|ref|YP_613213.1| peptidoglycan binding domain-containing protein [Ruegeria sp. TM1040] gi|99037339|gb|ABF63951.1| Peptidoglycan-binding domain 1 [Ruegeria sp. TM1040] Length = 540 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 120/418 (28%), Positives = 201/418 (48%), Gaps = 20/418 (4%) Query: 18 LILPMGLSLVEKPIHASVLD-------EIINESYHSIVNDRFDN-FLARVDMGIDSDIPI 69 + L L + ++D I+ E + + R + +P Sbjct: 120 VALSRALVDYATDLQTGLIDTPVRIDEGIVREKHKVDATRFLEGIATDRPAAFLQDLVPT 179 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 S+ + + +L GGW +P+R + G++ SV LR RL+ G L P+ Sbjct: 180 SSQ--YRALLREKMRLEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTA 237 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 S +D VE AV+ FQ HGL+ G+ TL+ +N PV RI+ + V + R + L Sbjct: 238 TRS--YDLDVEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMERERWLTP 295 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVI 246 ++ GLR++LVN+ S + ++ G++ + ++G + DR+TP ++ ++ NP W + Sbjct: 296 ER-GLRHILVNLTDFSAKIMDEGEISFETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYV 354 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGK 304 PRSII K+ + L+ +P + I + D +G+ V VD++ +F F RQ P Sbjct: 355 PRSIITKEYLPKLKNNPN--AHSYIEITDNRGRVVNRNNVDFSQFTARSFPFAMRQPPSS 412 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F ++ N Y+HDTP+ LF VR + GCVR+ + LL Sbjct: 413 RNALGLVKFMFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENP 472 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + V+ + K T V L T+VPVH +Y +A+ +D +FR D+YG D + Sbjct: 473 KDYFHRVLNSGKETKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALER 530 >gi|77918680|ref|YP_356495.1| hypothetical protein Pcar_1075 [Pelobacter carbinolicus DSM 2380] gi|77544763|gb|ABA88325.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 598 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 109/358 (30%), Positives = 184/358 (51%), Gaps = 8/358 (2%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + + +A Y+ + GGWP L P + G+ + LR L++ GDL+ S+ Sbjct: 210 RAGYQRLAVYLAHYRQLALGGGWPVLADGPPVRPGDRDARLPALRRFLVLVGDLESSRQS 269 Query: 131 SV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 S DA +A+K FQ+RHGL G++ TL +NVPV RI QL +NL R + +Q Sbjct: 270 SGWRMDAVTVAALKRFQVRHGLRADGVLGKDTLAQINVPVGRRIEQLGLNLERERW-PKQ 328 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 G RY+ V+I +L V+ G+ +R V+VG R+TP+ + + ++F PYW +P + Sbjct: 329 DAGDRYLQVDITDFTLTLVDGGREIMRMPVVVGTSFRRTPVFSALMTYLVFAPYWTVPPT 388 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPPNFI--FRQDPGK 304 I+++D + +++ +P YL ++ ++ + + +DW + +F RQ PG Sbjct: 389 ILEQDKLPVIKANPDYLDSHHYEIVAWGKDPNRTIDAASIDWKTITAKSFPGMLRQKPGP 448 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N + K F + + Y+HDTP LF R +SGC+R+ ++L ++LL W Sbjct: 449 WNPLGKVKFMFPNAYHVYLHDTPAQYLFAKQQRTFSSGCIRIARPLELAIYLLDGQKGWD 508 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 I++ + K V+L +PVH +Y +AW +QFR+D+Y D + Sbjct: 509 SERIKKEMAASKPYTVRLKNPIPVHILYRTAWVDVQGRLQFRNDVYERDQELQAALKQ 566 >gi|83647078|ref|YP_435513.1| hypothetical protein HCH_04383 [Hahella chejuensis KCTC 2396] gi|83635121|gb|ABC31088.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 560 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 117/421 (27%), Positives = 197/421 (46%), Gaps = 24/421 (5%) Query: 14 FFVYLILPMG-LSLVEKPIH----ASVLDEIINESY---HSIVNDRFDNFLARVDMGIDS 65 F + L+L ++L + +D + E R+ +++ Sbjct: 123 FELELLLTDAMVALSSDRLTGRFDPRSIDSVWREERTTGELAPRLYQALAEDRLLEDMNA 182 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDL 124 +P E + + ++ ++GGWP + P L G S V LR RLI SGD+ Sbjct: 183 MVPT--PEVYKGLSQLLTDLRETEAQGGWPMVSYGPTLRPGQSDSRVIELRRRLIASGDM 240 Query: 125 DP------SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 + FD + AV+ FQ RHGL P +V TL +N P+ RI Q++ Sbjct: 241 ERPVIDTSEGDDETLFDEGLVKAVRFFQERHGLKPDAIVGKETLAMLNTPISERIEQVRS 300 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 NL R + +G RYV+VNI L+ V++G+ L V+VG+ R+TP + + Sbjct: 301 NLERRRWTP-TNLGDRYVVVNIADYRLDLVDHGRTELSMRVVVGKPYRRTPAFSGLMTYL 359 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPN 295 + NP W +P I ++DM+ +DP+++ + G+E + E ++W + Sbjct: 360 VVNPLWEVPTQIAEEDMLERFIEDPEFINKMGFRVYKGWGREEAALDPETINWEEVKGGK 419 Query: 296 FIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 F +R Q G +NA+ K F + N Y+HDTP LF R +SGC+R+ ++L Sbjct: 420 FPYRLQQAAGPMNALGRIKFMFPNEFNVYLHDTPSRSLFYKSQRAFSSGCIRLERPLELA 479 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L+ + + +++++ + + T ++L VPVH Y +AW + QFR D+YG D Sbjct: 480 AALI-GSKRKTGIELDKILASGEPTTLRLPRPVPVHLQYWTAWMDDSGVAQFRKDVYGRD 538 Query: 414 N 414 Sbjct: 539 A 539 >gi|145219195|ref|YP_001129904.1| peptidoglycan binding domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205359|gb|ABP36402.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeovibrioides DSM 265] Length = 550 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 120/390 (30%), Positives = 189/390 (48%), Gaps = 8/390 (2%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR 100 + + + + P K +A+A Y+ I GGWP +P Sbjct: 157 KRLAELQLQLQKALASGSILTALQKMRPEYFK--YGLEREALARYRQIEQAGGWPVVPGG 214 Query: 101 -PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMRHGLDPSGMVD 158 + G S V +R RL ++GD + S D+ + +A++ FQ RH L G+ Sbjct: 215 QAIRPGQSDPRVPLIRRRLSVTGDFEGRGKESSVVLDSELAAAIRNFQKRHALQADGVAG 274 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 +TL AMNV R++QL+VNL R + + Q + +VLVNI SL+ V G + + Sbjct: 275 GATLAAMNVTARERVQQLRVNLERYRWFVGQ-LEPTFVLVNIAGFSLQYVHEGSLRWSTR 333 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 VIVG+ R+TP+ + + ++FNP WV+P +I+ +D + +RQDP YL + +ID KG Sbjct: 334 VIVGQPYRKTPVFKADMYSVLFNPRWVVPPTILAEDALPAIRQDPGYLSRKQLQVIDGKG 393 Query: 279 KEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 V ++WN+ F +R Q G A+ K +R+ Y+HDTP LF Sbjct: 394 SPVDPSSINWNAFGAAAFPYRLQQKAGDHGALGRIKFVMPNRHIVYLHDTPTKDLFEKSS 453 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N L +L D+ W+ I + T KT L +PV +Y++A Sbjct: 454 RTFSSGCIRVENPARLAELVLDDSLKWNGGAIRSAIATGKTHSEPLPRRIPVFILYLTAV 513 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 + +D + F +DIY D + + P Sbjct: 514 AERD-EVFFLEDIYDRDGAVLKALNAPTQK 542 >gi|84684826|ref|ZP_01012726.1| peptidoglycan binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667161|gb|EAQ13631.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 539 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 110/412 (26%), Positives = 188/412 (45%), Gaps = 15/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 L L + + + +D+ I A+ + + P E Sbjct: 126 LFLTYAKYIQTGILTPAAVDDGIKREVPLKDRTELLKAFSQAQPAPFLRTLPP--KSEEY 183 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ + + + + GGW P + L G+ +V +LR RL+ G +D S + Sbjct: 184 ARLMREKLRLERVRAEGGWGPTVQAGSLRPGDQGQAVIQLRNRLVTMGYMDRSAT--QTY 241 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D ++ AV+ FQ HGL G+ T++A+N PV+ R+ ++ V + R + + + G R Sbjct: 242 DENIQRAVQRFQTNHGLTADGVAGGDTVKAINTPVEDRLERIIVAMERERW-MNIERGDR 300 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQ 252 YV VN+ + V+ GKV + +VG+ +TP + ++ NP W +PRSII Sbjct: 301 YVWVNLTTFTARVVDGGKVTFETRSVVGQNLSTHRTPEFSDMMEHMVINPSWYVPRSIIV 360 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 + + LR + ++ + D +G+ V D++ NF F RQ PG NA+ Sbjct: 361 NEYLPALRANSG--AAGHLLITDARGRTVSRAT-DFSQYSARNFPFDMRQPPGPGNALGY 417 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF VR + GCVR++ D +L + Sbjct: 418 VKFMFPNQYNIYLHDTPSKSLFGREVRTFSHGCVRLQQPFDFAYTMLAPQEADPEGFFQS 477 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +++T + T V+L VPVH VY +A++ + +R+D+YG D + Sbjct: 478 ILRTGQETKVELDEPVPVHLVYRTAFTDTRGEMNYRNDMYGRDARIWAALQA 529 >gi|163731883|ref|ZP_02139330.1| peptidoglycan binding domain protein, putative [Roseobacter litoralis Och 149] gi|161395337|gb|EDQ19659.1| peptidoglycan binding domain protein, putative [Roseobacter litoralis Och 149] Length = 537 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 103/411 (25%), Positives = 184/411 (44%), Gaps = 14/411 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEII--NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L + + S +D+ I Y + + + + P Sbjct: 124 FLQYARDVQTGALVPSRVDKNIVRQVPYRDRKSYLTNFAKSSPKGFFKALPPQTG--EYN 181 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 K + ++++GGW P + + L G+S SV LR+RL+ G L + +D Sbjct: 182 ALRKQKLVLEGLIAKGGWGPTVKAKKLEPGDSGASVVALRDRLVRMGYLKRTAT--GTYD 239 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + + AV FQ HGL G+V TL +N V+ R++ + V + R + + + G R+ Sbjct: 240 STMTDAVMRFQADHGLAQDGVVGQGTLAEINTSVEKRLQSVIVAMERERW-VNKDRGKRH 298 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VN+ + + ++NGKV + ++G D RQ+P + ++ NP W +PRSI Sbjct: 299 IEVNLTDFTAKIIDNGKVTFTTRSVIGARDAKRQSPEFSDVMEFMVINPSWFVPRSIAIG 358 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMAST 311 + + L+Q+P + N++ + D G+++ VD+ + RQ P + NA+ Sbjct: 359 EYLPELQQNPNAV--NHLIITDRSGRQIDRTNVDFTKYTARTFPYAMRQPPSRSNALGLV 416 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP LF R + GC+R+ + + LL ++ Sbjct: 417 KFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRLADPFEFAYALLAKQSNDPEGLFKKT 476 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + T + L VPVH +Y +A + IQ+R D+YG D + Sbjct: 477 LASGTETQLNLKKPVPVHIIYRTALANSKGQIQYRRDVYGRDGRIWNALSQ 527 >gi|126726524|ref|ZP_01742365.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126704387|gb|EBA03479.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 535 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 112/410 (27%), Positives = 192/410 (46%), Gaps = 12/410 (2%) Query: 19 ILPMGLSLVEKPIHASVLDEIIN--ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L + + S ++ +I + + + S +P S E A Sbjct: 122 FLRYAHDIQSGILTPSSVNSLIARKAPRRGDQDLLEALMKSNPSRFMKSLVPS-SPEYTA 180 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + + + I S G P + + L G S V LR R+I G L S S +D Sbjct: 181 LLKAKRSLERAIGSTGWGPTVRAKSLKPGQSGAEVVALRNRMIRMGYLRKSA--SQKYDT 238 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + A++LFQ +GL P G+ + T++ +NV + R++Q+ V + R + L +G R+V Sbjct: 239 NLTKAIQLFQQDNGLLPDGVSGADTIKVVNVSANTRLQQVIVAMERRRWL-NIDLGKRHV 297 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ + NGKV + +VG+ DR+TP + ++ NP W +PRSI K+ Sbjct: 298 FVNLADFRASIINNGKVEFSTRAVVGKNISDRRTPEFSDVMTHMIINPTWHVPRSIAVKE 357 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + +L+++P + ++ M+D G+ V VD+ + +F F +Q P NA+ K Sbjct: 358 YLPMLKKNPGAVS--HLRMVDASGRTVSRTNVDFTAYTTKSFPFNLKQPPSNGNALGRVK 415 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F +++N Y+HDTP LF VR + GC+R+ + D LL + + + + + Sbjct: 416 FMFPNKHNIYLHDTPAKSLFARNVRAYSHGCIRLADPFDFAYALLSKEMSNGKDYFQRTL 475 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 KT+ T L + + VH Y +AW P + +R DIYG D + + Sbjct: 476 KTKVETQYTLKSSLKVHIDYRTAWVPAKGRVNYRRDIYGRDALIFKALAK 525 >gi|260427999|ref|ZP_05781978.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45] gi|260422491|gb|EEX15742.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45] Length = 544 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 110/411 (26%), Positives = 182/411 (44%), Gaps = 13/411 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF--DNFLARVDMGIDSDIPIISKETI 75 L L + +D I + ++ D + P Sbjct: 129 TFLKYAHDLNGGMLDGRRIDSGIKRPPQRLASEGLLQDLARRDPRAVLRDLAP--HSPEY 186 Query: 76 AQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ + ++ GGW + L G + V LR+RL+ L PS LS + Sbjct: 187 ARLMHEKLTLEHRIAHGGWGATVRSGKLEPGQTGADVVALRDRLVAMNYLAPS--LSARY 244 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGL 193 D + +AV FQ HGL G+ SSTL A+NV + R++ + V + R + L + + +G Sbjct: 245 DDAIVAAVSRFQEDHGLKVDGVAGSSTLSAINVGPEERLKSVIVAMERERWLNMPEGLGA 304 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSII 251 R++LVN+ +++GKV + +VG DR+TP R+ ++ NP W +PRSI+ Sbjct: 305 RHILVNLVDFHARIIDDGKVSFETRSVVGHQDPDRRTPEFSDRMEFMVINPSWYVPRSIV 364 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE-VDWNSPEPPNFIFRQDPGKINAMAS 310 + + LR++P + ++ + D G+ V S + RQ PG NA+ + Sbjct: 365 VNEYLPQLRRNPGAVS--HLEITDSSGRRVNRGRGFAQYSAASFPYAMRQPPGPRNALGT 422 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LFN R + GC+R+ + D LL + Sbjct: 423 VKFMFPNKYNIYLHDTPSKSLFNQNQRTYSHGCIRLGDPHDFAYALLARQTDDPVGFFQS 482 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 ++T T V L VPVH +Y +A++ + +R D+YG D + Sbjct: 483 RLRTGSETRVNLDEPVPVHLIYRTAFTKAKGQVNYRPDVYGRDARIWAALA 533 >gi|294636885|ref|ZP_06715215.1| cell wall degradation protein [Edwardsiella tarda ATCC 23685] gi|291089915|gb|EFE22476.1| cell wall degradation protein [Edwardsiella tarda ATCC 23685] Length = 550 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 119/407 (29%), Positives = 185/407 (45%), Gaps = 15/407 (3%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ + + +V++ + + + I S P + Sbjct: 134 YLQYVAGVGANGESWLYGGKRYTLATPPTGLVDNWQRALHQGTLTVFIRSLAPSSPQ--Y 191 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS-KGLSVA 133 A+A + WP+LP P + G+SS ++ LRE L SG L + Sbjct: 192 PAMRAALATL--LGESQPWPKLPSGPTIRPGDSSPALPILREILRRSGVLSANQADEGEV 249 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + +AVK FQ GL P G++ T +NV LR L +N+ R++ L Sbjct: 250 YTPALVAAVKRFQRDQGLTPDGVIGPRTYAWLNVTPQLRAALLALNIQRLRILPAAM--Q 307 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP SL +GK L S VIVGR R+TP+++S +N ++ NP W +P ++++ Sbjct: 308 TGIMVNIPNYSLIYYRDGKDVLASRVIVGRPSRKTPLMNSELNNVVVNPPWNVPTKLVRE 367 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFI--FRQDPGKINAM 308 D++ +DP Y + ++ + + +DWNS NF RQ PG N++ Sbjct: 368 DIVPKAMRDPGYFDRHGYTLLSGWSSDAQVINPYMIDWNSVSARNFPYRVRQAPGASNSL 427 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S++ Y+HDTP LFN +R +SGCVRV L LL D WS + Sbjct: 428 GRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVRVNKASTLADMLLADA-GWSDQRV 486 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ T V + +PV Y +AW D QFR DIY D + Sbjct: 487 AAALQAGNTQYVPIRQRIPVRLYYQTAWVDGDGAPQFRTDIYNYDQL 533 >gi|85860925|ref|YP_463127.1| peptidoglycan binding protein [Syntrophus aciditrophicus SB] gi|85724016|gb|ABC78959.1| peptidoglycan binding protein [Syntrophus aciditrophicus SB] Length = 567 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 125/415 (30%), Positives = 192/415 (46%), Gaps = 14/415 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IA 76 L ++ +D N A ++S + ++ + A Sbjct: 148 FFLYAAHLASGKVNPETVDAQWFLRKRPSPNLLRTLEQALSSAEVESILENLAPSSPAYA 207 Query: 77 QTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV--- 132 KA++ Y+DI R WP + L G+ S V LRERL + + Sbjct: 208 NLRKALSKYRDIERRRKWPVMMEGIRLKKGDRSEQVALLRERLDVPEVFPFWEDREDGEG 267 Query: 133 --AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 FD Y+E AVK FQ HGL G+ S TLEAMNV R+RQ++VNL R++ + Sbjct: 268 KYLFDEYLERAVKAFQKSHGLIADGVAGSETLEAMNVTAAERVRQIKVNLERLRWIP-DD 326 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G R V++NIP L +E K S ++VG+ + TP+ SRI + NPYW +PRSI Sbjct: 327 PGDRAVIINIPEFRLRVLEKEKEVFNSRIVVGKYAQNTPVFGSRITHFILNPYWHVPRSI 386 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP--PNFIFRQDPGKI 305 ++++ L++Q P+YL ++ ++ G + V +DW + N+ RQDPG Sbjct: 387 AVEEILPLIKQSPEYLNWEDMKVLSGSGAKTRIVPPWTIDWENMTAREFNYHLRQDPGPR 446 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N + K F + + Y+HDTP LF R + GC+RV N ++L V LL +R Sbjct: 447 NPLGRIKFYFPNPYDVYLHDTPYLHLFEQKKRNFSHGCIRVENPVELAVVLLGGNSIETR 506 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + ++T K +L V + Y + W+ D + FR DIY D + Sbjct: 507 KQLLSAIETGKRKQFQLRQPVSIRVFYFTTWAEADGTVHFRKDIYNHDLPLQKAL 561 >gi|83942461|ref|ZP_00954922.1| peptidoglycan binding protein, putative [Sulfitobacter sp. EE-36] gi|83846554|gb|EAP84430.1| peptidoglycan binding protein, putative [Sulfitobacter sp. EE-36] Length = 528 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 121/412 (29%), Positives = 196/412 (47%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L L + S +D I Y D + + + P Sbjct: 114 VFLQYARDLQTGVLVPSRIDPSIVREVPYRDRQTYITDFISSDPTPFLRNLRPRT--MEY 171 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + +L++GGW P +P L G V LR RL+ G L S + + Sbjct: 172 NALMREKLRMEHLLTQGGWGPAVPASSLKPGAQGTQVVALRNRLMSMGYLKRSNVM--TY 229 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA ++ AV+ FQ HGL+ G+ S T+ +N V+ R++ + V + R + L +++ G R Sbjct: 230 DATLQEAVRSFQKDHGLNEDGVAGSGTMAEINKSVETRLQSVIVAMERERWLNKER-GAR 288 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +VLVNIPA + V+NG+V + +VG + DR TP + I+ NP W +PRSI+ Sbjct: 289 HVLVNIPAFTASVVDNGQVTFETRSVVGANQSDRLTPEFSDVMEYIVINPTWTVPRSIVT 348 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMAS 310 K+ + ++++P +I +ID +G+ + V+++ F RQ PG+ NA+ Sbjct: 349 KEYLPSMQRNPN--AAGHIDLIDNRGRIISRGSVNFSRYTARTFPYGMRQKPGRTNALGL 406 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF+ VR + GCVR+ + D LL + + Sbjct: 407 VKFIFPNKYNIYLHDTPSKSLFDRDVRAFSHGCVRLADPFDFAYTLLAPQAADPVAYFKR 466 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T + T V L TEVPVH +Y +A++ Q+R DIYG D + Sbjct: 467 QLATGRETFVHLDTEVPVHIIYRTAFTTPRGHTQYRADIYGRDGRIWDALSK 518 >gi|83953680|ref|ZP_00962401.1| peptidoglycan binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841625|gb|EAP80794.1| peptidoglycan binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 528 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 121/412 (29%), Positives = 196/412 (47%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L L + S +D I Y D + + + P Sbjct: 114 VFLQYARDLQTGVLVPSRIDPSIVREVPYRDRQTYITDFISSDPTPFLRNLRPRT--MEY 171 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + +L++GGW P +P L G V LR RL+ G L S + + Sbjct: 172 NALMREKLRMEHLLTQGGWGPAVPASSLKPGAQGTQVVALRNRLMSMGYLKRSNVM--TY 229 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA ++ AV+ FQ HGL+ G+ S T+ +N V+ R++ + V + R + L +++ G R Sbjct: 230 DATLQEAVRSFQKDHGLNEDGVAGSGTMAEINKSVETRLQSVIVAMERERWLNKER-GAR 288 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +VLVNIPA + V+NG+V + +VG + DR TP + I+ NP W +PRSI+ Sbjct: 289 HVLVNIPAFTASVVDNGQVTFETRSVVGANQSDRLTPEFSDVMEYIVINPTWTVPRSIVT 348 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMAS 310 K+ + ++++P +I +ID +G+ + V+++ F RQ PG+ NA+ Sbjct: 349 KEYLPSMQRNPN--AAGHIDLIDNRGRIISRGSVNFSRYTARTFPYGMRQKPGQTNALGL 406 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF+ VR + GCVR+ + D LL + + Sbjct: 407 VKFIFPNKYNIYLHDTPSKSLFDRDVRAFSHGCVRLADPFDFAYTLLAPQAADPVAYFKR 466 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T + T V L TEVPVH +Y +A++ Q+R DIYG D + Sbjct: 467 QLATGRETFVHLDTEVPVHIIYRTAFTTPRGHTQYRADIYGRDGRIWDALSK 518 >gi|149203870|ref|ZP_01880839.1| peptidoglycan binding protein, putative [Roseovarius sp. TM1035] gi|149142987|gb|EDM31029.1| peptidoglycan binding protein, putative [Roseovarius sp. TM1035] Length = 522 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 108/409 (26%), Positives = 194/409 (47%), Gaps = 12/409 (2%) Query: 18 LILPMGLSLVEKPIHASV-LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L + + S + +I E + LA+ + ++ S E Sbjct: 108 TYLRYAHDVQSGVLVPSKVIGDIKREVVRQESGALLNEILAKEPSRVMRNLAPRSNEYAR 167 Query: 77 QTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 ++ + + +++ GGW + L G+S +V LR RLI G LD S +D Sbjct: 168 LLKQKL-RLEQLVAEGGWGAAVSAEKLRPGDSGPAVIALRNRLIAMGYLDRSAA--QTYD 224 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 ++ AV+ FQ HGL+ G+ S+TL A+N P R++ + V + R + L E++ G R+ Sbjct: 225 MRLQQAVQAFQGDHGLETDGIAGSTTLAAVNTPATERLKSVIVAMERERWLSEER-GQRH 283 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQK 253 +LVN+ S ++N V + ++G+ D R++P + ++ NP W +P SI Sbjct: 284 ILVNLTDFSARILDNDSVTFATRAVIGKNDQNRRSPEFSDEMEYMVINPTWHVPYSIAVN 343 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 + + ++++P ++ + + G+EV V++ + NF F +Q P + NA+ Sbjct: 344 EYLPQMQRNPGAAS--HLKLYNRNGREVSRGAVNFGAYNARNFPFAIKQPPSERNALGLV 401 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP+ LF+ R + GC+R+ D LL + + V Sbjct: 402 KFMFPNKYNIYLHDTPQKALFDLEKRDFSHGCIRLHQPFDFAYALLGRQESDPKAFFHSV 461 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + T + T V+L VPVH +Y +A++ Q+R D+YG D + Sbjct: 462 LGTGRETYVQLEQHVPVHIIYRTAFTQAQGRPQYRGDVYGRDARIWEAL 510 >gi|110679848|ref|YP_682855.1| peptidoglycan binding domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455964|gb|ABG32169.1| peptidoglycan binding domain protein, putative [Roseobacter denitrificans OCh 114] Length = 537 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 108/411 (26%), Positives = 189/411 (45%), Gaps = 14/411 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEII--NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L + + S +D+ I Y + + + + P E A Sbjct: 124 FLQYARDIQTGALVPSRVDKNIVRQVPYRDRKSYLTNFAKSSPKGFFKALPPQTG-EYNA 182 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 ++ + + ++++GGW P + + L G+ SV LR+RLI G L S +D Sbjct: 183 LMKQKLV-LEGLVAKGGWGPTVKAKKLEPGDQGASVVALRDRLIRMGYLKRSAAS--TYD 239 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A + +AV FQ HGL G+V TL +N V R++ + V + R + + +++ G R+ Sbjct: 240 AAMTAAVVRFQADHGLAQDGIVGRGTLAEINTSVRKRLQAVIVAMERERWVNKER-GTRH 298 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VN+ + + ++ GKV + ++G D RQ+P + ++ NP W +PRSI Sbjct: 299 IEVNLTDFTAKIIDKGKVTFSTRSVIGARDAKRQSPEFSDVMEFMVINPSWFVPRSIATG 358 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMAST 311 + + L+QDP + N++ + D G+++ VD+ + RQ P + NA+ Sbjct: 359 EYLPELQQDPNAV--NHLIITDRSGRQIDRANVDFTKYTERTFPYAMRQPPSRSNALGLV 416 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP LF R + GC+R+ + + LL ++ Sbjct: 417 KFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRLADPFEFAYALLAKQSGDPEGLFQKT 476 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T K T + L VPVH +Y +A + IQ+R D+YG D + Sbjct: 477 LATGKETQLNLKKPVPVHIIYRTAVADSKGRIQYRRDVYGRDGRIWEALSQ 527 >gi|78189746|ref|YP_380084.1| hypothetical protein Cag_1790 [Chlorobium chlorochromatii CaD3] gi|78171945|gb|ABB29041.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length = 563 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 118/420 (28%), Positives = 201/420 (47%), Gaps = 19/420 (4%) Query: 18 LILPMGLSLVEKPIHASVLD--------EIINESYHSIVNDRFD--NFLARVDMGIDSDI 67 ++ + + LD + ++ ++ + Sbjct: 147 VLATRAFLTLATHLRYGKLDPVRFEPTWNFSSPPNLFHFDELLARTLQRTSPSEVLNGLL 206 Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDP 126 P +K +A Y++I GGW +P L G+ V LR+RL SGD+ Sbjct: 207 PRDP--GYDVLKKELARYREIAKNGGWSAIPAGTLLQEGSRDARVPLLRQRLAASGDISS 264 Query: 127 SKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 S ++ V AVK FQ +HGL G+V ++TL A+NV D RI QL+VNL R + Sbjct: 265 SAVADTTTLYNPDVTKAVKRFQQQHGLWSDGVVGATTLRAINVSADERIGQLRVNLERCR 324 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + V+VNIPA +L E G + VIVG+ R TP+ + + ++ NP W Sbjct: 325 WLL-HDISPTSVIVNIPAYTLHYFEQGDRRWSTRVIVGQPKRPTPVFRADMQLLILNPRW 383 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDP 302 V+P +++ KD++ + +DP YL+ + ++DE G + + W+S +R Q Sbjct: 384 VVPSTVLAKDVLPAVIKDPAYLRKKKLRVVDENGTIIDPATIKWSSYSASTLPYRLQQKS 443 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G A+ K +R Y+HDTP+ LF R +SGC+RV++ +L +L+ + Sbjct: 444 GDDGALGRIKFLMPNRYTIYLHDTPDKALFQKTQRAFSSGCIRVQHPEELARLVLRHSNR 503 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 SR +E +K+ T+ ++L ++PV+ +Y++A ++ +FR+DIY D + + Sbjct: 504 ESRPSLESRIKSGATSTIRLPQQIPVYLIYLTALP-CNNKAEFREDIYHRDPQILKALDA 562 >gi|254503422|ref|ZP_05115573.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222439493|gb|EEE46172.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 562 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 116/411 (28%), Positives = 190/411 (46%), Gaps = 13/411 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINE-SYHSIVNDRFDNF--LARVDMGIDSDIPIISKETI 75 L L + + +++ +N + ++ P + Sbjct: 152 YLRYATHLSSGRVQPNKVNKALNLFPDRPDPTMLLEQAVEAIDFSAFLEGLAPR--SDNY 209 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VA 133 A+ ++ +A Y++ + G + +P L G S V LR+RLI D+ + S Sbjct: 210 ARLKRRLAQYREKAATGPFTSVPDGDVLKPGMSDTRVAALRQRLIEE-DIPGAAEHSGDV 268 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + AV FQ HGL G++ TL +N+P++ ++ Q+++N+ R + + +G Sbjct: 269 YDGVLVEAVTTFQDHHGLANDGVIGKETLARLNIPLEEKLVQMELNMERRRW-MRDDLGS 327 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 YV VN+ L+ V+ GK + V+VG+ TP+ ++ + NP+W +P SI Sbjct: 328 FYVFVNLADQELKVVKEGKTIHTAPVVVGKPYHATPVFSDTLDYVEINPFWNVPYSIATS 387 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMAST 311 + + L+Q+P L NI + G E+ ++ WNS NF FR QDPG NA+ Sbjct: 388 EYLPKLKQNPSALSSKNIRVFR-DGTEIAPTQIAWNSYARGNFPFRLRQDPGNSNALGRI 446 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F + N Y+HDTP LF+ R + GC+RV + L LL + H E+V Sbjct: 447 KFMFPNEFNIYIHDTPSKSLFSRAERAFSHGCIRVSDPFALADVLLAHKNA-NEGHWEKV 505 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 T K T VK + + VH Y++AW KD FR DIY D + + Sbjct: 506 RDTEKRTVVKPSVPIEVHLTYLTAWMNKDGSTHFRKDIYRRDEKLLEALRT 556 >gi|255263285|ref|ZP_05342627.1| peptidoglycan-binding domain 1 protein [Thalassiobium sp. R2A62] gi|255105620|gb|EET48294.1| peptidoglycan-binding domain 1 protein [Thalassiobium sp. R2A62] Length = 533 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 104/411 (25%), Positives = 180/411 (43%), Gaps = 13/411 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 L L + + S +D I Y + + S P Sbjct: 120 LFLQYARDVQTGVLVPSRVDREIKREVPYRGRAQTLAAFAQSTPAAFLRSLPPAAP--EY 177 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 ++ + + +L++GG+ L G S V LR RLI G L+ + +D Sbjct: 178 SRLMREKLRLEQLLAQGGFGARVSGTLAPGTSGQQVVNLRNRLIAMGFLEGNAT--QTYD 235 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A +++AV+ FQ HGL+ G T+ +N + R++ + V + R + + + G R+ Sbjct: 236 ANIQAAVQRFQTAHGLNADGSAGQGTVTELNKSAESRLQAVIVAMERERWI-NRPRGTRH 294 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQK 253 V VN+ + ++N V ++ ++G D R++P + ++ NP W +PRSI K Sbjct: 295 VWVNLTDFTASIIDNDAVTFQTRSVIGANDSNRRSPEFSDVMEFMVINPSWYVPRSIATK 354 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 + + L+ +P + ++ + D +G+ V V+++ F F RQ P + NA+ Sbjct: 355 EYLPRLQSNPNAVS--HLEITDSRGRVVNRSSVNFSQYSARTFPFNMRQPPSRGNALGLV 412 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP LF VR + GC+R+ + D LL + Sbjct: 413 KFMFPNQYNIYLHDTPAKNLFGREVRAYSHGCIRLNDPFDFAYALLAKQTADPEGFFQAK 472 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 ++T V L VPVH VY +A++ + FR DIYG D + Sbjct: 473 LRTAAEARVNLNQPVPVHIVYRTAFTDVRGTLNFRRDIYGRDGKIWNALSR 523 >gi|144899601|emb|CAM76465.1| protein conserved in bacteria [Magnetospirillum gryphiswaldense MSR-1] Length = 532 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 194/374 (51%), Gaps = 10/374 (2%) Query: 54 NFLARVDMGIDSDIPIISK-ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 LA + IP+ + + A+A Y+ + + GGW +P P + G + Sbjct: 148 RELAAGRELAATLIPVQPAYAGYHRLKVALARYEKLAADGGWSVIPDGPSIKAGMEDARL 207 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 +R+RLI++G+L ++ DA + AVK FQ RHG+DP G + TL A+N+ + Sbjct: 208 PLVRKRLIVTGELATNQSQGNTLDAPLIEAVKRFQGRHGIDPDGAIGKQTLTALNISAEE 267 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R+RQ+ NL R + + +++ ++ VN+PAA E V G++ + V+VG + QTP + Sbjct: 268 RVRQVAANLERWRWMP-RRLDSTHIAVNLPAAHFELVREGRIDMAMRVVVGDIQHQTPTM 326 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE---VDW 288 + + ++ NP W +P SI K+++ LR+DP YL +NN+ ++D + + +DW Sbjct: 327 ATTMTSVVINPTWTVPPSIATKEILPKLRKDPGYLANNNMRILDAFDGDFEKSQGLGIDW 386 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + RQ PG NA+ K + ++ Y+HDTP+ F + R + GCVR+ Sbjct: 387 SKYSKFPYRLRQKPGSDNALGQVKFNLDNGDDIYLHDTPKRQYFGRIFRALSHGCVRLER 446 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 DL LL ++E V T VKL + V+ +Y++AWS +D + FR+D Sbjct: 447 PTDLAKLLLPAQ----ADKLDEWVLDDTTRTVKLDKPLTVYLMYMTAWSDEDGTVHFRED 502 Query: 409 IYGLDNVHVGIIPL 422 +YG D+ + Sbjct: 503 LYGHDSRLKTALKR 516 >gi|163746379|ref|ZP_02153737.1| peptidoglycan binding domain protein, putative [Oceanibulbus indolifex HEL-45] gi|161380264|gb|EDQ04675.1| peptidoglycan binding domain protein, putative [Oceanibulbus indolifex HEL-45] Length = 583 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 116/412 (28%), Positives = 197/412 (47%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVL-DEIINE-SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L + + + +I+ E Y D + P S E Sbjct: 169 VFLRYARDVQTGVLIPKRIISQIVREIPYRDRKTYLQDLPKTSPAAYFRAL-PPRSLEYN 227 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A ++ I + +LS+GGW P +P L G++ V LR RLI G L+ S + + Sbjct: 228 ALLKEKIV-MEKLLSQGGWGPSVPAGKLEPGDTGNDVIALRNRLIAMGYLERSNAVG--Y 284 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA + AV+ FQ HGL+ G+ +T++ +N+ V+ R++ + V L R + G R Sbjct: 285 DATLTDAVRQFQEAHGLNTDGVAGPATMKQINIGVEQRLQSVMVALERERWF-NTDRGKR 343 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++LVNIP S + +++GK ++ +VG R DR TP + ++ NP W +PRSI+ Sbjct: 344 HILVNIPDFSAKIIDDGKTTFQTRSVVGAAREDRPTPEFSDVMEHMVVNPSWYVPRSIVT 403 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 + + L+Q+ + +I + D G++V V+++ F F RQ P NA+ Sbjct: 404 GEYLPQLKQNRNAVS--HIEITDRSGRKVNRGAVNFSKYTARTFPFSMRQPPSNTNALGL 461 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF+ VR + GCVR+ + LL + Sbjct: 462 VKFMFPNKYNIYLHDTPAKSLFDRDVRAFSHGCVRLAEPFEFAYALLAPQSADPEGDFQA 521 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V+++ + T + L +VPVH +Y +A + ++RDD+YG D + + Sbjct: 522 VLRSGRETRIVLEEQVPVHLIYRTAVTNARGHTEYRDDVYGRDALIWNALAK 573 >gi|238920326|ref|YP_002933841.1| peptidoglycan-binding domain 1 protein [Edwardsiella ictaluri 93-146] gi|238869895|gb|ACR69606.1| peptidoglycan-binding domain 1 protein [Edwardsiella ictaluri 93-146] Length = 544 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 114/407 (28%), Positives = 185/407 (45%), Gaps = 15/407 (3%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G++ + +V++ + ++ + I S P + Sbjct: 128 YLQYVAGVTANGDAWLYGNKSYTLAAPPVGLVDNWQRALRQGKLTVFIRSLAPSNPQ--Y 185 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP-SKGLSVA 133 A+ + WP++P P L G+SS +V LRE L+ SG L +G Sbjct: 186 LAMRSALERL--LADTTPWPQMPGGPTLRPGDSSPAVAPLREILLRSGALPATDEGDGNV 243 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + +AVK FQ GL P G++ T +NV +R L +N+ R++ L Sbjct: 244 YTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPSMRASLLALNIQRLRLLPASVY-- 301 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP S+ GK L S VIVGR R+TP+++S +N ++ NP W +P ++++ Sbjct: 302 TGIMVNIPNYSMTYFREGKDVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVRE 361 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFI--FRQDPGKINAM 308 D++ +DP Y + + ++ + + +DW+S NF RQ PG N++ Sbjct: 362 DIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMLDWSSVSARNFPYRVRQAPGAGNSL 421 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S++ Y+HDTP LFN +R +SGCVR+ L LL D WS + Sbjct: 422 GRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVRINKASTLADMLLADA-GWSPERV 480 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ T V + +PV Y + W QFR DIY D + Sbjct: 481 ASALQAGNTQYVPIRQRIPVRLYYQTVWVSDGGEPQFRTDIYNYDQL 527 >gi|328544358|ref|YP_004304467.1| peptidoglycan binding domain protein [polymorphum gilvum SL003B-26A1] gi|326414100|gb|ADZ71163.1| Putative peptidoglycan binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 543 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 118/407 (28%), Positives = 181/407 (44%), Gaps = 11/407 (2%) Query: 22 MGLSLVEKPIHASVLDEIINE-SYHSIVNDRFDN--FLARVDMGIDSDIPIISKETIAQT 78 LV + + +++ +N + D + +D P A+ Sbjct: 136 YATHLVSGRVQPNAVNKALNIFPHVPDAGDLLEAVAEAPDFGAFLDGLSPNTP--NYARL 193 Query: 79 EKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 ++A+A Y+ + GG+ +P L G S + LR R+ L P +D Sbjct: 194 KQALAAYRAKAAAGGFTPVPDGAVLKPGMSDPRLDVLRRRMEQQDYLAPGAHAGDVYDGA 253 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AVK FQ HGL G+V TL MNVP+ R+ Q+++N+ R + + +G YV Sbjct: 254 LVEAVKTFQDYHGLAVDGVVGKDTLAEMNVPIGRRLIQMELNMERRRWMP-DDLGEAYVF 312 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VN+ +L+ V +GK + V+VG+ TP+ + + NPYW +P SI + + Sbjct: 313 VNLADQNLKVVRDGKTVHTARVVVGKPYHATPVFSKDMTYVEVNPYWNVPPSIATNEYLP 372 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 L +P+ L NI + EV ++ W S F F RQDPG NA+ K F Sbjct: 373 KLISNPRALDGQNIRVFSGD-AEVSPHQIAWASYSGGPFPFKLRQDPGDGNALGRIKFMF 431 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + N Y+HDTP LF R + GC+RV + L LL D R ++ + Sbjct: 432 PNEFNIYIHDTPSRALFERAQRSFSHGCIRVSDPFALAEVLLADQ-GLDRAALDRAKASG 490 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + L +PVH Y++AW KD FR DIYG D V + Sbjct: 491 DRQVITLRRPIPVHLTYLTAWMNKDGSTHFRKDIYGRDEVLQKALAR 537 >gi|254487232|ref|ZP_05100437.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] gi|214044101|gb|EEB84739.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] Length = 516 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 120/412 (29%), Positives = 195/412 (47%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L L + S +D + Y D + + + P Sbjct: 102 VFLQYARDLQTGILIPSRIDSSMVREVPYRDRQAYLTDFIKSDPMPFLRNLRPRT--MEY 159 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + +L+ GGW P + L G +V LR RLI G L + G+S + Sbjct: 160 NALMREKLEMEKLLATGGWGPVVSASTLKPGAQGAAVVSLRNRLIRMGYLKRTNGIS--Y 217 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA +E+AV+ FQ HGL+ G+ S T+ +N V+ R++ + V + R + L +++ G R Sbjct: 218 DATMEAAVREFQKDHGLNTDGVAGSGTITELNKSVETRLKSVIVAMERERWLNKER-GAR 276 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +VLVNIPA + ++NG+V + +VG + R TP + I+ NP W +PRSI+ Sbjct: 277 HVLVNIPAFTAAIIDNGRVTFETKSVVGATKDGRYTPEFSDTMEYIVINPTWNVPRSIVT 336 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + ++ +P +I +ID G+ V V+++S F F RQ PG+ NA+ Sbjct: 337 KEYLPSMKNNPN--AAGHIDLIDRSGRIVPRGAVNFSSYTEQTFPFSMRQRPGRSNALGL 394 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF +R + GCVR+ + D LL + + Sbjct: 395 VKFIFPNKYNIYLHDTPSKSLFARDMRAFSHGCVRLADPFDFAYTLLAAQTSDPVGFFKS 454 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T + T V L E+PVH +Y +A++ Q+R DIYG D + Sbjct: 455 KLATGRETFVHLDNELPVHLIYRTAFTTPRGHTQYRADIYGRDAKIWNALSK 506 >gi|269139502|ref|YP_003296203.1| hypothetical protein ETAE_2157 [Edwardsiella tarda EIB202] gi|267985163|gb|ACY84992.1| hypothetical protein ETAE_2157 [Edwardsiella tarda EIB202] gi|304559391|gb|ADM42055.1| L,D-transpeptidase YcbB [Edwardsiella tarda FL6-60] Length = 544 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 114/407 (28%), Positives = 184/407 (45%), Gaps = 15/407 (3%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G++ + +V++ + + + I S P + Sbjct: 128 YLQYVAGVAANGDAWLYGNKSYTLAAPPAGLVDNWQRALRQGTLTVFIRSLAPSNPQ--Y 185 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLD-PSKGLSVA 133 A+ + WP++P P L G+SS ++ LR L+ SG L G Sbjct: 186 PAMRTALETL--LADTQPWPQMPSGPTLRSGDSSPAIATLRAILLRSGALSTAEAGDGDV 243 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + +AVK FQ GL P G++ T +NV +R L +N+ R++ L Sbjct: 244 YTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPSMRAALLALNIQRLRLLPASV--H 301 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP S+ +GK L S VIVGR R+TP+++S +N ++ NP W +P ++++ Sbjct: 302 TGIMVNIPNYSMTYYRDGKDVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVRE 361 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFI--FRQDPGKINAM 308 D++ +DP Y + + ++ + + +DWNS NF RQ PG N++ Sbjct: 362 DIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMIDWNSVSARNFPYRVRQAPGASNSL 421 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S++ Y+HDTP LFN +R +SGCVR+ L LL D WS + Sbjct: 422 GRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVRINKASTLADMLLADA-GWSPERV 480 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ T V + +PV Y +AW QFR DIY D + Sbjct: 481 ASALQAGNTQYVPIRQRIPVRLYYQTAWVSDGGEPQFRTDIYNYDQL 527 >gi|85702799|ref|ZP_01033903.1| peptidoglycan binding protein, putative [Roseovarius sp. 217] gi|85671727|gb|EAQ26584.1| peptidoglycan binding protein, putative [Roseovarius sp. 217] Length = 541 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 111/412 (26%), Positives = 193/412 (46%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 L + + S +D I Y L + S P S E Sbjct: 127 TYLQYARDVQSGVLIPSRVDSDIKRDIVYRDASTLMSQIVLGDAFKVMRS-FPPHSNE-Y 184 Query: 76 AQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ K + +++ GGW +P L G++ SV LR RLI G + S S + Sbjct: 185 ARLLKEKLRLERLIALGGWGGAVPAETLRPGDTGQSVVALRNRLIAMGYVTRSA--SQTY 242 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA ++ AV+ FQ HGLD G+ +T+ A+N R++ + V + R + L + G R Sbjct: 243 DARLQQAVQAFQTDHGLDADGVAGGATMAALNTSASERLKSVIVAMERERWLT-EDRGTR 301 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++LVN+ S ++N +V + ++G+ D R++P + ++ NP W +P SI Sbjct: 302 HILVNLTDFSARILDNDQVTFATRAVIGKNDAGRRSPEFSDEMEHMVVNPTWHVPYSIAV 361 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 + + ++++P ++ + + G+EV V++ + NF F +Q P + NA+ Sbjct: 362 NEYLPQMQRNPGAAS--HLKLYNRNGREVSRGAVNFGAYNARNFPFAIKQPPSERNALGL 419 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP+ LF+ R + GC+R+ D LL + + + + Sbjct: 420 VKFMFPNKYNIYLHDTPQKALFDLEKRDFSHGCIRLHQPFDFAYALLAKQESDPQAYFKS 479 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V+ TR+ T V+L VPVH +Y +A++ Q+R D+YG D + Sbjct: 480 VLDTRRETYVQLEQHVPVHIIYRTAFTQAQGRPQYRGDVYGRDGRIWDALQK 531 >gi|21674674|ref|NP_662739.1| hypothetical protein CT1862 [Chlorobium tepidum TLS] gi|21647879|gb|AAM73081.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 571 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 19/368 (5%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSK 128 K + Y+ I GGW + P +G + +R+RLI+SGDL K Sbjct: 193 PSPEYVLLRKNLLRYRKIAENGGWQPVYQGPNIEKVGQVDKRMPLIRQRLILSGDLAADK 252 Query: 129 ---------------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 + + AV FQ HGL G++ TL AMN P +LR Sbjct: 253 LVAPADSSLSSAAPVPSDQVYTQELFDAVLAFQQSHGLSADGIIGLETLNAMNYPAELRA 312 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 Q++VNL R + +G YV+VNIPA SL+ V++ +V +S VIVG+ D QTPI + Sbjct: 313 DQIRVNLERERWYG-GILGGTYVMVNIPAFSLKYVKDNEVRWKSRVIVGKPDTQTPIFAA 371 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 +I + FNP+WVIP I+ K+ + +R+D YL + + ++D GK V V+W S Sbjct: 372 QIQSVTFNPHWVIPPGILSKEAIPAIRKDIGYLAKHQLTVVDSNGKPVDPSRVNWYSDGG 431 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + Q G ++ K +R YMHDTP LF +R + GCVRV +L Sbjct: 432 FPYRLVQASGDDGSLGRIKFNMPNRFMVYMHDTPTKPLFERSMRAYSHGCVRVDRPYELA 491 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L++D+ WS IE + T KT + L +VPV+F Y +A++ + I FR+DIY D Sbjct: 492 EQLMRDSKNWSLSKIEAAINTGKTRTIPLTVKVPVYFFYQTAFADGN-KIGFRNDIYDRD 550 Query: 414 NVHVGIIP 421 + + Sbjct: 551 KKLLDALN 558 >gi|311695538|gb|ADP98411.1| peptidoglycan-binding domain 1 protein [marine bacterium HP15] Length = 550 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 128/420 (30%), Positives = 194/420 (46%), Gaps = 19/420 (4%) Query: 18 LILPMGLSLVEKPIHASVLD------EIINESYHSIVNDRFDNFL--ARVDMGIDSDIPI 69 L+ ++ + ++ E + + L + + +DS P Sbjct: 111 LLFSDAFLMLSSHMLVGKVNPQTVHAEWTANRRQRQMESVLKDALQRSDITGTLDSLRPA 170 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK- 128 + A +L + P + G+ + +R RL + G+L S Sbjct: 171 DPA--YRKLMAARQDLTRLLGQPWLPLALSPTIRPGDRDERLNEVRRRLSLLGELAESPA 228 Query: 129 --GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 +DA +ESAV FQ RHGL+ G++ TL A+NV R+R + L R + L Sbjct: 229 TFSDPRDYDAELESAVMRFQARHGLEADGLIGKDTLTALNVIPVERLRHIDATLERWRWL 288 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +G YVLVNI L+ VENG LR VIVG+ RQTP+ RI ++FNP W + Sbjct: 289 P-ESLGDTYVLVNIAGFELKMVENGAEVLRKRVIVGQPFRQTPVFSDRIRYLVFNPTWTV 347 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPE--PPNFIFRQD 301 PR+++ +D + + +DP YL NI + G + V EVDW S + Q+ Sbjct: 348 PRTLMIQDQLPRILRDPNYLSRLNISVYRGWGADRERVDPLEVDWPSLNRNNFPYQLVQE 407 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG NA+ K F ++ + Y+HDTP LF+ R +SGC+RV DL LL P Sbjct: 408 PGPQNALGQIKFMFPNQYDVYLHDTPGRGLFSRAERSFSSGCIRVEQPFDLAERLLASAP 467 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 WSR I+ VV + V L VPVH Y ++W + +QFR+D+Y D + + Sbjct: 468 DWSREKIDRVVSEAQPQTVVLPEPVPVHIQYWTSWVDNEGRLQFRNDLYNRDARLIDQLR 527 >gi|254462001|ref|ZP_05075417.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium HTCC2083] gi|206678590|gb|EDZ43077.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium HTCC2083] Length = 536 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 109/412 (26%), Positives = 191/412 (46%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEII--NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L L + S +D I V+ + + P Sbjct: 122 IFLQYSRDLQTGVLTPSKVDREIVRQVPLRDRVSYLTNFTKSSPKRFFQVLAP--KAPEY 179 Query: 76 AQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ K + L++GGW + +P + L G + +V LR RL + G L S S + Sbjct: 180 ARLMKTKLMMERQLAKGGWGQKVPQKSLKPGQTGNAVVILRNRLQVMGYLKRSS--SQTY 237 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA ++SA++ FQ+ GL+P G+ T+ +N P++ ++ + V + R + + + G R Sbjct: 238 DAAMQSAMQQFQLSRGLNPDGIAGPGTMAEINRPIESHLQAIMVAMERERW-MNRPRGKR 296 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++ VN+ S ++NGK RS ++G+ DR++P + ++ NP W +PRSI Sbjct: 297 HIWVNLTDFSATIIDNGKESFRSRSVIGKNQRDRRSPEFSDVMEFLVVNPTWNVPRSIAT 356 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + LL+++P + ++ ++D +G+ V ++ F F +Q P NA+ Sbjct: 357 KEYLPLLKKNPNAV--GHLRIVDSRGRTVSRSAANFGEYSAKTFPFSIKQPPSNSNALGL 414 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F +R+N Y+HDTP LF+ VR + GC+R+ + LL + + + Sbjct: 415 VKFMFPNRHNIYLHDTPAKNLFSREVRAYSHGCIRLHQPFEFAYALLAKQTSDPKGFFQS 474 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T T V L VPVH VY +A+ + +R DIYG D + Sbjct: 475 KLSTGTETQVNLNAPVPVHIVYRTAFVTANGTANYRRDIYGRDAKIFAALAK 526 >gi|320355292|ref|YP_004196631.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobulbus propionicus DSM 2032] gi|320123794|gb|ADW19340.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobulbus propionicus DSM 2032] Length = 636 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 114/390 (29%), Positives = 196/390 (50%), Gaps = 13/390 (3%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISK--ETIAQTEKAIAFYQDILSRGGWPELPI 99 S ++ A I + + +S + ++A+ Y+ I S+GGWP++P+ Sbjct: 205 TPRTSPIDTYL---TAIRTGAIQATLDKLSPHHKAYVNLKEALIRYKQIASKGGWPQVPM 261 Query: 100 RP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLDPSGMV 157 P L G V +R RL I+ + G + +D+++ +AVK FQ RH L+P G+V Sbjct: 262 GPSLRPGAHDDRVPAIRRRLAITDHYHATGGGNAKQYDSHLVAAVKAFQARHHLEPDGVV 321 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 ST+ AMNV V RI+QL+VNL R + ++ M ++V+I L+ + S Sbjct: 322 GKSTVMAMNVTVAERIKQLRVNLERTRWVI-HDMPSSNLIVDIAGFMLQYYHDNAPVWTS 380 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VG+ QTPI S I I+ NP W I I++ + + + +DP YL + ++D Sbjct: 381 KVMVGQPFHQTPIFRSAITYIVLNPTWTITPDIVKNETVPSIIKDPGYLAKQRLRVLDRN 440 Query: 278 GKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G V + W + + RQD G+ N++ K F + + Y+HDTP LF Sbjct: 441 GNAVDPNTIPWTQYQGRYFPYTLRQDAGRDNSLGLIKFLFPNPYHVYLHDTPSKSLFGRT 500 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWS--RYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 R + GC+RV+N ++L +L + P +++++ + KTT V L +P++ +Y+ Sbjct: 501 RRAFSHGCIRVQNPLELGRMILANDPGNPTTPAKMDQILASGKTTTVILKQPLPIYLMYL 560 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 +A D+ + F+ D+Y D + + P Sbjct: 561 TANVQ-DNKVMFKPDLYSRDEGILTALNTP 589 >gi|83952122|ref|ZP_00960854.1| peptidoglycan binding protein, putative [Roseovarius nubinhibens ISM] gi|83837128|gb|EAP76425.1| peptidoglycan binding protein, putative [Roseovarius nubinhibens ISM] Length = 523 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 108/412 (26%), Positives = 197/412 (47%), Gaps = 14/412 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEII--NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L + L + + +D I Y S V + + S P Sbjct: 109 TMLLLARDLQTGMLVPAKVDREIVRQVPYRSRVAHLTNFSTSNPRGFFRSLPP--KNAEY 166 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 ++ + + ++ +GG+ PE+P + L G S +V +R RL+I G + S S + Sbjct: 167 SRLLREKLRLEALMLQGGFGPEVPAKSLKRGQSGPAVVAMRNRLVIMGFMPRSA--SQEY 224 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA + AV+ FQ HGL G ++T+ +N V+ R++ + V + R + + Q G R Sbjct: 225 DAKLAEAVQAFQAAHGLVADGDAGAATVAEINTSVETRLKSILVAMERERWI-NQPRGDR 283 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +VLVN+ S V++ +V ++ ++G DR++P + + NP W +PRSI Sbjct: 284 HVLVNLTDFSARIVDHDEVTFQTRAVIGLNDSDRRSPEFSDVMEYMEINPTWNVPRSITV 343 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + ++++P ++ + + +G++V V++N+ F F +Q P NA+ Sbjct: 344 KEYLPQMQRNPN--AAGHLKLYNSRGQQVSRANVNFNAYTARTFPFALKQPPSNRNALGL 401 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF R + GC+R+++ D LL + Sbjct: 402 VKFMFPNKYNIYLHDTPAKSLFQRNKRDFSHGCIRLQDPFDFAYALLARQEEDPKGFFHR 461 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V+ T + T V+L +VPVH +Y +A++ +Q+R+D+YG D + Sbjct: 462 VLNTGQQTQVRLKKQVPVHIIYRTAFTQAKGPMQYRNDVYGRDARIWSALQQ 513 >gi|260575117|ref|ZP_05843118.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sp. SW2] gi|259022739|gb|EEW26034.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sp. SW2] Length = 531 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 108/410 (26%), Positives = 185/410 (45%), Gaps = 14/410 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 +L L + S +D I H + + P Sbjct: 118 LLDYARDLQTGALVPSEIDPGIKREVPVHDRHANLVAFETGNPVAFLRGLAPT--ATAYP 175 Query: 77 QTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 Q KA + ++ GGW +P L G +V LR+RLI G L + +D Sbjct: 176 QLMKAKLDLEAQIASGGWGAAVPSGALKPGQDGPAVVALRDRLIRMGYLHRTATA--IYD 233 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A ++ AV+ FQ+ HGL G+ + T+E +N+ + R + + V + R + + G R+ Sbjct: 234 ADMQKAVQAFQLAHGLTADGVAGTGTIEQINIGPEARWQSVVVAMERERW-MNIDRGHRH 292 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VN+ + + +++GKV S ++G+ DR++P + ++ NP W +PRSI + Sbjct: 293 IWVNLTDFTAKIIDDGKVTFTSRSVIGKNAADRRSPEFSDMMEFMVINPSWSVPRSITTR 352 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 + + +++++P ++ +ID G+ V VD+ NF F RQ P NA+ Sbjct: 353 EYLPMMQRNPN--AAGHLKLIDRAGRVVSRASVDFTRYTAANFPFAMRQAPSSGNALGLV 410 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F + N Y+HDTP LF N VR + GC+R+ + D LL + E+ Sbjct: 411 KFMFPNPYNIYLHDTPSKSLFANEVRDFSHGCIRLGSPFDFAYALLARQTDDPKGLFEQH 470 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + + + LA VPVH VY +A+ + +R D+YG D + + Sbjct: 471 LNGGGESRLDLAAPVPVHLVYFTAFPGAKGQMNYRRDVYGRDALIFDALS 520 >gi|220931487|ref|YP_002508395.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] gi|219992797|gb|ACL69400.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] Length = 547 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 124/426 (29%), Positives = 209/426 (49%), Gaps = 25/426 (5%) Query: 5 LKINKILYCFFVYLILPMGLSLVEKPIHASVLD------EIINESYHSIVNDRFDNFLAR 58 ++ + L L L+ + + E+I + +I + Sbjct: 123 REVALSFELLMTKVYLDYTLDLLTGYTRNGMFNKMYDKHELIKKLNRAIEQE-------S 175 Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRER 117 + P +E + KA++ ++I S+ WP + P L G+ S + LR R Sbjct: 176 LGKFFIDLYP--GQELYFRMRKALSHLRNISSK-DWPRVGYGPPLQRGDYSKRIIELRRR 232 Query: 118 LIISGDLDPSKGLSVAF-DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 L +SGDL + + + D +E AV+ FQ RHGL SG+VD T+EA+N+PV +I ++ Sbjct: 233 LYLSGDLSEEQLNTGTYFDRELEKAVRKFQRRHGLKDSGIVDDKTIEALNIPVKEKINKI 292 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 +N+ R++ L V+VNIP L+ + KV L S VIVG + QTP + I Sbjct: 293 IINMERLRWLPRDN-PDLCVMVNIPEYKLKVIREDKVILESKVIVGSRENQTPSFNDSIE 351 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV---FVEEVDWNSPEP 293 I+ NPYW IP +I + +++ +++DP YL +NI ++ EV ++++W+ P Sbjct: 352 YIVLNPYWYIPDNITRYELLPQIKKDPDYLDKHNIQILSGFEGEVKIIPEDQINWDEVTP 411 Query: 294 --PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 ++ RQ PG N++ S K F + N Y+HDTP LF R + GC+RV ++ Sbjct: 412 ENFSYKLRQKPGPGNSLGSIKFLFPNDFNVYLHDTPSRGLFEYRERALSHGCIRVERPLE 471 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L +L WS + ++ + ++L VP++ +Y++ W D +I +R+DIY Sbjct: 472 LAK-VLISQSNWSYNEVISIINSGNREVIELKNPVPIYLIYLTVWVDDDGVIHYREDIYQ 530 Query: 412 LDNVHV 417 D V Sbjct: 531 RDKKLV 536 >gi|254454682|ref|ZP_05068119.1| hypothetical protein OA238_5313 [Octadecabacter antarcticus 238] gi|198269088|gb|EDY93358.1| hypothetical protein OA238_5313 [Octadecabacter antarcticus 238] Length = 535 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 113/411 (27%), Positives = 190/411 (46%), Gaps = 12/411 (2%) Query: 18 LILPMGLSLVEKPIHA-SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L L + + SV+ EI E FLA + +P S E A Sbjct: 121 LFLSYARDVQTGILTPRSVVSEIRREVPLRSRLGYLQGFLASTPASYLATLPPNSPE-YA 179 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + + +L++GGW P + L +G S V+V LR+RL+ G ++ S +D Sbjct: 180 RLLREKMSLERLLAQGGWGPAVSSGSLAVGASGVAVVALRDRLVAMGYMERSAT--QIYD 237 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A ++ AV+ FQ HGL G + TL +NVP R++Q+ V + R + + + G R+ Sbjct: 238 ATIQEAVQRFQQTHGLAEDGEAGAGTLTEINVPAASRLQQIIVAMERERW-MNRPRGERH 296 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQK 253 V VN+ S ++N +V ++ ++G RQTP + ++ NP W +PRSI+ Sbjct: 297 VWVNLVDFSAAIMDNDRVTFQTRSVIGATGSNRQTPEFSDVMEYMVINPSWYVPRSIVVN 356 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMAST 311 + + L+ + + +I + D G+ + V+++ + RQ P + NA+ Sbjct: 357 EYLPALQSNRNAVS--HIEITDSNGRAINRSNVNFSQFNSRTFPYSMRQPPSRGNALGLV 414 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP LF VR + GC+R+ + D LL + Sbjct: 415 KFIFPNQYNIYLHDTPAKSLFGREVRAFSHGCIRLNDPFDFAYALLAAQEDDPEGVFQSH 474 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T + T V L VPVH VY +A++ + FR D+Y D+ + Sbjct: 475 LDTGRETRVNLDEPVPVHLVYRTAFTHTTGQLNFRRDVYDRDSRIWDALAN 525 >gi|154253343|ref|YP_001414167.1| peptidoglycan-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157293|gb|ABS64510.1| Peptidoglycan-binding domain 1 protein [Parvibaculum lavamentivorans DS-1] Length = 399 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 143/384 (37%), Positives = 210/384 (54%), Gaps = 8/384 (2%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHL 104 +A S P++S ET+ AI Y+ I + GGW + L L Sbjct: 17 DPWQAETGAAVAEAPPFERSSAPVLSAETLLPLTHAIETYRVIANLGGWGYVASGERLEL 76 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V ++RERL +GDL + +DA V AV+ +Q+R+GL+P G+V T+ A Sbjct: 77 GVRDPRVVQVRERLTATGDLTVPAQDAELYDANVYEAVRRYQVRNGLEPDGIVGRRTIAA 136 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 MNV V RIRQL++NL R+ + + RYV VNI +EAV NG V R VIVG+ Sbjct: 137 MNVRVQTRIRQLELNLRRLSAAVPA-LPDRYVFVNIAGQEVEAVNNGIVEFREPVIVGKQ 195 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEV 281 DRQTP + S +N I FNPYW +P+SI DM+ +R +P YL+ I ++ +E+ Sbjct: 196 DRQTPEITSEVNSITFNPYWYVPKSIAMADMLPKIRANPDYLQRQGIRVLQGWDTNIREL 255 Query: 282 FVEEVDWNSPE-PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +DW++P + FRQDPG N++ S KI F + ++HDTP LF R + Sbjct: 256 NPRNIDWSNPRINEAYYFRQDPGPGNSLGSLKINFPNNQAIFLHDTPTKTLFGRQERNFS 315 Query: 341 SGCVRVRNIIDLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 SGCVRV+N+ L WL++ D+ W + V +R+ V LAT VP++ +Y++AW Sbjct: 316 SGCVRVQNVRGLVSWLMQGDSSEWDAARVARSVDSRQYRNVSLATPVPIYLMYLTAWVTP 375 Query: 400 DSIIQFRDDIYGLD-NVHVGIIPL 422 + I+ FRDD+Y D +V+ + Sbjct: 376 EGIVNFRDDVYDRDGSVNTSALEN 399 >gi|251789271|ref|YP_003003992.1| hypothetical protein Dd1591_1660 [Dickeya zeae Ech1591] gi|247537892|gb|ACT06513.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] Length = 563 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 114/428 (26%), Positives = 192/428 (44%), Gaps = 29/428 (6%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETI 75 YL G+ + + +++ + I S P S+ Sbjct: 135 YLQFVAGVEKNGGNWLYGSVPYKLAAPSAAMIEQWQQAITSGNGAAFIASLAPRHSQ--Y 192 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-- 132 + A+ + WP+L L G+ S ++ L+E L+ +G L Sbjct: 193 EKMHTALKNM--LTDNRPWPKLVLADSLRPGDESNALPVLQEILLRTGMLSQDSAAMPLF 250 Query: 133 ------------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 +D + AVK FQ GL G++ T + +NV +R L +N+ Sbjct: 251 NDATAAGNTAALRYDGEMVEAVKRFQHSQGLLDDGVIGKRTRDWLNVSSQMRAALLALNI 310 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R++ + ++ ++VNIP SL +NG L S VIVG+ R+TP++ S ++ ++ Sbjct: 311 QRLRLVPDKV--SSGIVVNIPNYSLSYYQNGAEILSSRVIVGQPKRKTPLMSSSLSNVVM 368 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFI 297 NP W +P ++ ++D++ + QDP YL+ + ++ + + +DW NF Sbjct: 369 NPPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSGWTDSAQPIDPSMIDWPMMSAGNFP 428 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q PG N++ K + ++ Y+HDTP LF +R +SGCVRV +L Sbjct: 429 YRLRQAPGDSNSLGRYKFNMPNTDSIYLHDTPNHNLFQKDIRALSSGCVRVNKASELAAL 488 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN- 414 LL+D W+ I ++ TT V + VPV+F Y++AW D QFR DIY D+ Sbjct: 489 LLQDA-GWNNARISSTLEQGNTTYVAVRQRVPVNFYYLTAWVADDGKPQFRTDIYNYDDT 547 Query: 415 VHVGIIPL 422 V G + L Sbjct: 548 VKTGTLAL 555 >gi|126729661|ref|ZP_01745474.1| peptidoglycan binding protein, putative [Sagittula stellata E-37] gi|126709780|gb|EBA08833.1| peptidoglycan binding protein, putative [Sagittula stellata E-37] Length = 540 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 108/413 (26%), Positives = 190/413 (46%), Gaps = 14/413 (3%) Query: 18 LILPMGLSLVEKPIH--ASVLDEIINESYHSIVNDRFDNFLARVDMGI-DSDIPIISKET 74 L + L + +V+ +I E + + S +P Sbjct: 123 LFISFANDLQTGVLDDPGAVISDIKREVPRRAPEELLSRLTTERPDAVFRSLVP--PTAE 180 Query: 75 IAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 ++ +A + + GGW P + L G S +V LR RL+ L PS Sbjct: 181 YSRLMRAKLMLEHRIRHGGWGPVVQASSLEPGESGQAVVALRNRLVAMNYLKPSLT--TR 238 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL-EQKMG 192 +D + +AV+ Q HGL+ G+ +STL A+N + R++ + V + R + L + G Sbjct: 239 YDEDMTAAVRAVQEDHGLNVDGVAGASTLRAINAAPEERLKSIMVAMERERWLNSPEGRG 298 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSI 250 R+VLVN+ + +++ KV + ++G+ +TP + ++ NPYW +PRSI Sbjct: 299 KRHVLVNLVDFHAQIIDDDKVTFETRSVIGQNQSTHRTPEFSDTMEHMVINPYWYVPRSI 358 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV-EEVDWNSPEPPNFIFRQDPGKINAMA 309 I + + LLR +P ++ +ID +G+ V + S + RQ PG NA+ Sbjct: 359 IVNEYLPLLRSNPG--AAGHLEIIDGRGRVVSRGQSFAQYSGRSFPYSMRQRPGPRNALG 416 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + K F ++ N Y+HDTP LF+ VR + GCVR+ + D LL + Sbjct: 417 TVKFMFPNKYNIYLHDTPSQSLFSREVRTFSHGCVRLNDPHDFAYALLSRQERDPVNFFQ 476 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 ++++ + T V LA +PVH +Y +A++ + +R+D+YG D + + Sbjct: 477 SILRSGQNTKVPLAEPIPVHLIYRTAFTQAKGNVNYRNDVYGRDEILWRALQN 529 >gi|193212014|ref|YP_001997967.1| peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] gi|193085491|gb|ACF10767.1| Peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] Length = 583 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 126/434 (29%), Positives = 204/434 (47%), Gaps = 28/434 (6%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIV---NDRFDNFLARV--DMGIDSDIPIISKE 73 + + + + LD N +D + + I S P Sbjct: 138 LFTLLSHMRAGKVVPKSLDSNWNLPLSGPAKNSDDMLKSAVMDAKFPEMIASLRPSTP-- 195 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPL--HLGNSSVSVQRLRERLIISGDL------- 124 K +A Y+ + + GGW +P P +G + +R+RL+++GDL Sbjct: 196 EYRLLRKGLAKYRKVAAAGGWKPVPAGPRIGDVGQIDERMPLIRKRLVVTGDLIEDGLTI 255 Query: 125 --------DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 + + + A + AVK FQ RHGL+ G++ + T AM VPV+ I Q+ Sbjct: 256 SAPANSADSTAARQAFVYTAELFDAVKAFQERHGLEVDGIIGTETAGAMAVPVEEWIDQI 315 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 ++NL R + +G YV+VNIP+ S+E V + V +S VIVG+ + QTP+ + I Sbjct: 316 RINLERYRWYSS-SLGSTYVMVNIPSFSVEFVRDDSVRWKSRVIVGKPNLQTPVFKAEIQ 374 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 ++FNP WVIP I+ K+ + ++++ YL + + +++ +GK V V+W + + F Sbjct: 375 SVIFNPRWVIPSGILAKEALPAIKKNLDYLSRHQLTVVNNQGKPVDPSSVNWAAYQGRGF 434 Query: 297 IFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 +R Q G A+ K +R YMHDTP LF R + GCVRV+N +L V Sbjct: 435 PYRLVQASGDDGALGRIKFNMPNRFTVYMHDTPTKPLFERSYRAFSHGCVRVQNPNELGV 494 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L D W IE ++ T KT + L +PV+F+Y +A+ D+ I FR D+Y D Sbjct: 495 LLFNDPVKWDMNRIEAMIDTGKTRTINLPERIPVYFMYQTAFPDGDN-IDFRYDVYDRDP 553 Query: 415 VHVGIIPLPEDHPI 428 + + I Sbjct: 554 DLQKALDSTRERVI 567 >gi|114767686|ref|ZP_01446383.1| peptidoglycan binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114540304|gb|EAU43401.1| peptidoglycan binding protein, putative [Roseovarius sp. HTCC2601] Length = 525 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 111/403 (27%), Positives = 176/403 (43%), Gaps = 13/403 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINES--YHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L L + +D I + P Sbjct: 111 YLQFARDLSGGALDGRRIDSGIKREPARRGSEDLLEALATGEPRAVFRDLAPKTP--EYT 168 Query: 77 QTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + + +++RGGW + + L G+S V LR+RLI G L P LS +D Sbjct: 169 RLMREKLSLERVIARGGWGAPVTVGKLDPGDSGPGVVILRDRLIEMGYLKP--TLSARYD 226 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLR 194 + AV FQ HGL+ G+ SSTL A+NVP R++ + V + R + + +G R Sbjct: 227 DALRDAVLAFQGDHGLEADGVAGSSTLSAVNVPATERLKSVIVAMERERWINFADGLGER 286 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +VLVNI +++GKV + +VG DR+TP + ++ NP W +PRSI+ Sbjct: 287 HVLVNIVDFHARIIDDGKVTFETRSVVGHQDPDRRTPEFSDVMEFMVINPSWYVPRSIVV 346 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE-VDWNSPEPPNFIFRQDPGKINAMAST 311 + + LLR++P + ++ + D +G+ V S F RQ PG NA+ Sbjct: 347 NEYLPLLRRNPGAVS--HLVITDSRGRRVNRGNGFAQYSAASFPFAMRQPPGPKNALGQV 404 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP LF R + GC+R+ + D LL Sbjct: 405 KFMFPNKYNIYLHDTPSKHLFARGQRTFSHGCIRLGDPKDFAYALLALQTDDPEGFFASR 464 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++ + V L VPVH +Y +A++ + +R D+YG D Sbjct: 465 LRGGSESRVNLEQPVPVHLIYRTAFTQAKGRVNYRADVYGRDA 507 >gi|188591281|ref|YP_001795881.1| hypothetical protein RALTA_A0493 [Cupriavidus taiwanensis LMG 19424] gi|170938175|emb|CAP63161.1| conserved hypothetical protein, COG2989; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 529 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 118/425 (27%), Positives = 189/425 (44%), Gaps = 27/425 (6%) Query: 29 KPIHASVLD-EIINESYHSIVNDRFDNF--------LARVDMGIDSDIPIISKETIAQTE 79 +H ++ ++ ++ FD R+ I P Sbjct: 103 SDLHGGRINPRAVHANFAPPAERPFDAATWLRDAVAQHRLPDAIRQAAPTFP--LYGTLR 160 Query: 80 KAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +A+A Y+DI + W P LP L G L RL+ GDL ++ Sbjct: 161 QALARYRDIARQPVWQQPLPPLPASKLTPGQPWAGAAALTARLVALGDLPAGTQPPARYE 220 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + VK FQ RHGL G++ ++TL +N+P+ R+RQ+++ + R++ G R Sbjct: 221 GALVDGVKAFQSRHGLQADGVIGAATLAQLNLPIADRVRQIELTMERLRWTPLD--GPRM 278 Query: 196 VLVNIPAASLEAVE----NGKVGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSI 250 ++VN+P L A E + L VIVG+ D +TP+ + I F+PYW IP SI Sbjct: 279 IVVNVPEFMLRAYEIRDGKLDIKLEMKVIVGKALDTRTPLFEEDMRYIEFSPYWNIPPSI 338 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV-EEVDWNSPEPPNFIFRQDPGKINAMA 309 +++ + LR+DP Y + + GK V E + ++ + RQ PG +NA+ Sbjct: 339 ARRETVPRLRRDPGYFSRQGLEFVGGDGKAVTTLSEENLDAVLNGSLRIRQRPGPLNALG 398 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + N Y+H TP P LF R + GC+RV + L ++L D P W+ I Sbjct: 399 DIKFVFPNNENIYLHHTPSPQLFKRDRRDFSHGCIRVEAPVALAQFVLHDMPDWNEARIR 458 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP----LPED 425 E + K+ V+L +PV Y + + D + F+ DIYG D + + P+ Sbjct: 459 EAMARGKSNTVRLQQPLPVVLAYGTVIARADGRVSFQPDIYGHDKLLDKALRQRTGRPQP 518 Query: 426 HPIDS 430 I S Sbjct: 519 RAIAS 523 >gi|84503420|ref|ZP_01001480.1| peptidoglycan binding protein, putative [Oceanicola batsensis HTCC2597] gi|84388207|gb|EAQ01159.1| peptidoglycan binding protein, putative [Oceanicola batsensis HTCC2597] Length = 539 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 104/415 (25%), Positives = 191/415 (46%), Gaps = 20/415 (4%) Query: 18 LILPMGLSLVEKPIHASVLDEIINE-----SYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 L L + + + S +D I + A + S P + Sbjct: 125 LFLRYAVDVQTGVLKPSDVDSGIVRKVPLRDRRGYLEGI---TSADPAAFVASLPPQ--R 179 Query: 73 ETIAQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + + + +++ GG+ + + L G++ +V LR RL+ G L G+ Sbjct: 180 LEYTRLMREKLRLERLIASGGFGATVQAQSLEPGDTGEAVVALRNRLMTMGYLPRRVGV- 238 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +D +ESAV FQ HGL G+ ++T+ +NVPV+ R++ + V + R + + + + Sbjct: 239 -TYDRDMESAVLRFQADHGLSEDGVAGTATIAEINVPVEERLKSVIVAMERERWI-NRDL 296 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRS 249 G R+VLVN+ +ENGK+ ++ ++G+ +TP + ++ NP W +PRS Sbjct: 297 GDRHVLVNLTDFHARIMENGKIYFKTRSVIGKNLSTHRTPEFSDVMEHMIVNPTWNVPRS 356 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINA 307 I + + +++P ++++ +ID +G+ V V++ + NF F +Q P NA Sbjct: 357 IAVSEYLPAFKRNPY--SNSHLKLIDARGRVVDRGSVNFAAYSKRNFPFDLKQPPSSRNA 414 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F + +N Y+HDTP LF+ VR + GC+R+ + LL Sbjct: 415 LGLVKFMFPNVHNIYLHDTPAKSLFSRDVRAFSHGCIRLNEPFEFAHALLAWQSDDPEGL 474 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T + T + LA+ +PVH +Y +A S + +R D+YG D + Sbjct: 475 FRSTLNTGRETKIDLASPLPVHLIYRTAMSQPKGQMSYRRDVYGRDGRIWEALAR 529 >gi|152993980|ref|YP_001359701.1| hypothetical protein SUN_2408 [Sulfurovum sp. NBC37-1] gi|151425841|dbj|BAF73344.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 558 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 123/432 (28%), Positives = 201/432 (46%), Gaps = 20/432 (4%) Query: 6 KINKILYCFFVYLILPMGL------SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARV 59 ++ + + +Y + G +L I A + + + + Sbjct: 131 QLYEEYANYVIYGSINWGALQARLSNLRVSAITAGWITY--KPDSSPLQVAENAVLMGSL 188 Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERL 118 P K K + Y I GGWP + L G+ + +V LRERL Sbjct: 189 KKAFQEAEPR--KYHYRALRKYLDKYIAIKENGGWPTVNIKGVLRPGHRNPAVPDLRERL 246 Query: 119 IISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 +I+GD P S +D ++ AV FQ R+GL G++ +TL+A+N VD RI + Sbjct: 247 LITGDYIPCDESDESDLYDNCLKKAVIRFQKRNGLSAKGVIGKNTLKALNQTVDERITII 306 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 ++NL RIK L ++ R++++NIP L NGK+ + VIVG+ TPI +R+ Sbjct: 307 KINLDRIKWL-HERPDNRHIIINIPDYRLYYEVNGKLKMTMKVIVGKRKNPTPIFSNRVK 365 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP 293 ++ NPYW +P+SIIQK+M+ L ++P + I + GK +V V+W Sbjct: 366 SVVLNPYWNVPKSIIQKEMIPKLLRNPHAMAGQGIDIYTGWGKDAKKVSGGSVNWAQYRY 425 Query: 294 P---NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + F Q PG NA+ K F ++ + YMHDTP LF R + GC+R+ Sbjct: 426 SKTVPYRFAQRPGNRNALGRIKFLFPNQFHVYMHDTPTKYLFKRDKRSYSHGCIRLEKPK 485 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 + + P+ +++K++K T L +P+ VY++AW D +QFRDD+Y Sbjct: 486 LMMETIASFNPSLELDKAYKILKSKKNTYFSLENTIPIDVVYLTAWVDYDGKLQFRDDVY 545 Query: 411 GLDNVHVGIIPL 422 D + + + Sbjct: 546 KYDELMIASVRR 557 >gi|304393082|ref|ZP_07375011.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294847|gb|EFL89218.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 492 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 176/362 (48%), Gaps = 9/362 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 I FY I GGWP++P L +G V LR+RL I+GD S Sbjct: 50 YRGLATGITFYTQIAQSGGWPQVPEGGTLSVGVDDPRVPILRQRLYITGDYLGEDTQSTM 109 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FDA ++ AV FQ R+G +P G V +TL +MNVPV+ R+ QL++N R + +G Sbjct: 110 FDAALKEAVVAFQNRNGQEPDGAVGPATLASMNVPVEKRLEQLRINQRRWDNMPA-SLGD 168 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R+VLVN+ LE +E K L V+VG+ TP I I NPYW +P SI K Sbjct: 169 RFVLVNMAGFELEVIEGEKTVLDMKVVVGKDYHSTPEFSDLIKTIEINPYWNVPASIANK 228 Query: 254 DMMA---LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAM 308 ++ +++ + V V ++ W + N FR Q PG NA+ Sbjct: 229 ELKLDYMKGAATLAKADSQGYEVVNGD-QVVPVSQIAWTKYKDDNLPFRIRQRPGPSNAL 287 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F +++N Y+HDT LF+ VR + GCVR+ +L +LL W R I Sbjct: 288 GDMKFLFPNKHNVYLHDTQAKSLFSKTVRAFSHGCVRLHRPRELAEYLLA-ANGWDRAKI 346 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 +EVV + + T VKL PVH Y++AW + IQFR DIYG D + P Sbjct: 347 DEVVASGERTRVKLEQPTPVHLAYMTAWLGRQGFIQFRPDIYGRDAEDAQQLAPPPSDDF 406 Query: 429 DS 430 +S Sbjct: 407 NS 408 >gi|309389689|gb|ADO77569.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium praevalens DSM 2228] Length = 546 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 120/409 (29%), Positives = 205/409 (50%), Gaps = 18/409 (4%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVN-----DRFDNFLA--RVDMGIDSDIPIISKETIA 76 L L ++ + EII E + + + LA ++ ++S++P + Sbjct: 133 LDLASDYLNGKINAEIIIEDNNYQADSLQSKKLLNALLAKENIEESLNSNLPKT--KAYQ 190 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKG-LSVAF 134 + + + +Y+D WP++ + L + V V+ LR+ L L + F Sbjct: 191 KLREKLFYYRDSGQINAWPQIKGKQILTKNSKGVRVKELRQNLKAKNYLTENNSKQDYIF 250 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 ++ AV FQ+ +GL P G+V TL+A+N+P+ RI+QL VN+ R + L + +G R Sbjct: 251 TEQLKEAVMKFQVDYGLTPDGVVGPKTLKALNIPLSERIKQLIVNMERWRWLP-ENLGDR 309 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y+ VNI L+ E + + IVG+ R TP+ I ++ NPYW +P +I +D Sbjct: 310 YIYVNIANYKLKLYEEQQKIMEMKTIVGKKQRSTPVFSDEIKYLVLNPYWYVPHTIAVED 369 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGK----EVFVEEVDWNSP--EPPNFIFRQDPGKINAM 308 + L+++D YL+D N + G ++ +VDW + N++ RQ+PG NA+ Sbjct: 370 KLPLIKKDLNYLEDKNYSLFKYIGNNRLEKIDPTKVDWTKITKDNFNYLLRQNPGDQNAL 429 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F ++ + Y+HDTP LF+ R +SGC+R+ I+L +LL D W R +I Sbjct: 430 GRIKFMFPNKFSIYLHDTPSQYLFSEQERSFSSGCIRIEKPINLAEYLLIDQEKWGRENI 489 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 E +K K V L + ++ Y +AW K++ + FR+DIY D + Sbjct: 490 EAAIKKDKEKIVYLKKPIKIYLQYNTAWVDKENNLNFREDIYNRDQKII 538 >gi|85857899|ref|YP_460101.1| cell wall degradation protein [Syntrophus aciditrophicus SB] gi|85720990|gb|ABC75933.1| cell wall degradation protein [Syntrophus aciditrophicus SB] Length = 625 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 127/376 (33%), Positives = 200/376 (53%), Gaps = 12/376 (3%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 + ++ ++ P + + + Y DI GGW ++P PL G V Sbjct: 238 ALESSEMEATLNEVAPRF--YGYMKLRERLNEYIDIAEAGGWRKIPAGRPLMKGMRDKRV 295 Query: 112 QRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 + LR+RLI +G FD +E+AV+ FQ +HGL G+V +TL +NVPV+ Sbjct: 296 RTLRKRLISTGMASLSQAKTDTYFDLDLETAVRRFQRQHGLREDGIVGRTTLVELNVPVE 355 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 +RI Q+ VNL R++ L ++G R++L+NIP +LE VE+ +V + IVG+ D++T + Sbjct: 356 VRICQMAVNLDRLRWLP-YELGDRHILINIPDFNLEIVEDKRVVMHIRAIVGKTDKRTNL 414 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDW 288 L SRI I NPYW IP+SI ++ + L+++P+YL I + + V + W Sbjct: 415 LSSRITAIELNPYWKIPKSIAVEEFLPQLKRNPRYLGKK-IKVFAGDYQTNPVSPTSIKW 473 Query: 289 NSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + NF + RQ+PG N + K F + + Y+HDTP LF R + GCVR+ Sbjct: 474 SRVTAENFPYFLRQEPGSDNPLGRVKFVFSNEADIYIHDTPTRNLFTQDKRSFSHGCVRI 533 Query: 347 RNIIDLDVWLLKDTP--TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 +DL +LLK P WS +I+ ++ K P+ L VPVH VY + W ++ + Sbjct: 534 EKPVDLAAYLLKIQPNNRWSSQNIQAEIRKGKNLPLPLNERVPVHIVYQTVWIDREGNLN 593 Query: 405 FRDDIYGLDNVHVGII 420 FR DIY +DN+ ++ Sbjct: 594 FRPDIYDIDNIPANLL 609 >gi|242239070|ref|YP_002987251.1| hypothetical protein Dd703_1632 [Dickeya dadantii Ech703] gi|242131127|gb|ACS85429.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] Length = 564 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 111/420 (26%), Positives = 186/420 (44%), Gaps = 31/420 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHS---IVNDRFDNFLARVDMGIDSDIPIISKE 73 Y+ G+ + + S + S P S+ Sbjct: 137 YMQFVAGVEKNGSHWLYGNVSYTLAAPPSSMVAQWQQAIHE--GSSAAFVASLAPRHSQ- 193 Query: 74 TIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD------- 125 A+ +A+ + WP L L G+ S ++ LR+ L+ +G L+ Sbjct: 194 -YAKMHQALKDM--LTDNRPWPRLVLGETLRPGDESPALPVLRDILLRTGALNQGNVSMP 250 Query: 126 ------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 PS ++ +D + AVK FQ GL G + T + +NV R L +N Sbjct: 251 LFNEAQPSGPEALRYDGELVEAVKRFQRLQGLQDDGSIGKRTRDWLNVSSQTRATLLALN 310 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + R++ + + ++VNIP SL NG V L S VIVG+ R+TP++ S ++ ++ Sbjct: 311 IQRLRLVPDNV--NTGIMVNIPNYSLSYYLNGSVILSSRVIVGQPKRKTPLMSSSLSNVV 368 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSP--EPP 294 NP W +P ++ ++D++ + QDP YL+ + ++ +++ +DW Sbjct: 369 MNPPWNVPTTLTRQDIIPKVIQDPAYLQKHGYVLLSGWSEDAQQIDPAMIDWPMVSANNF 428 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 + RQ PG N++ K + + Y+HDTP LF +R +SGCVRV +L Sbjct: 429 PYRLRQAPGDNNSLGRYKFNMPNTDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASELAA 488 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 LL+D W+ I ++ TT V + +PV+F Y++AW D QFR DIY D+ Sbjct: 489 LLLQDA-GWNNARISSTLEQGNTTYVSIRQRIPVNFYYLTAWVADDGKPQFRTDIYNYDD 547 >gi|295096375|emb|CBK85465.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 607 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 125/448 (27%), Positives = 197/448 (43%), Gaps = 43/448 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+S+ S + S++N + + I S P + Sbjct: 165 YLQFVAGISVNGNRWLYSSKPYKLATPALSVINQWQLSLDNGELPRFIASLAPAHPQ--Y 222 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL---- 130 A +++ + + WP+L L G S V +RE + SG LD + Sbjct: 223 ATMHQSL--LELVADSRPWPQLRGTTTLRPGQWSSDVPAIREIMKRSGILDSGPKIALPG 280 Query: 131 -------------------------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+D + +AVK FQ GL G++ ST + + Sbjct: 281 DETQNAVVSPSAPVKEKTAVALSNKPAAYDRELVAAVKQFQAAQGLGADGVIGPSTRDWL 340 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 NV R L +N+ R++ L ++VNIPA SL ++G L S VIVGR D Sbjct: 341 NVSPAQRAGVLALNIQRLRLLPGTL--STGIMVNIPAYSLVYYQDGSEVLASRVIVGRPD 398 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFV 283 R+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ +N ++ + + Sbjct: 399 RKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHNYTVMRGWNSKEAIDP 458 Query: 284 EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 VDW++ P N FR Q PG N++ K S + Y+HDTP LF R +S Sbjct: 459 WMVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDARALSS 518 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ D Sbjct: 519 GCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRHNIPVNLYYLTAFVGADG 577 Query: 402 IIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 Q+R DIY D G LP+ + Sbjct: 578 RTQYRTDIYNYDLTARSGAQILPKAEQL 605 >gi|256419987|ref|YP_003120640.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256034895|gb|ACU58439.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 549 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 110/407 (27%), Positives = 175/407 (42%), Gaps = 12/407 (2%) Query: 19 ILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 G + S E + D+ + + + P+ + Sbjct: 146 FFAYGNKVWSGLTSDSAKSLEWFIPRKKINMESLLDSMVNKPASA--FEEPVNRQ--YKL 201 Query: 78 TEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + D+ W L + S V +++RL + GDL S F Sbjct: 202 LRNQLKKLSDLEKM-PWDSLKASRKLYKKEESDPLVTSVKQRLHLLGDL-ALADTSQLFT 259 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 ++SA++ FQ R GL G + + L A+NV RIRQ+ +N+ RI+ + + Y Sbjct: 260 PALDSAIRNFQDRTGLKTDGTIQAPLLNALNVTPRQRIRQILINMERIRWVPAEPPAE-Y 318 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +LVNIPA L N K+ V+VG+ T I + + ++F PYW +P I+ ++ Sbjct: 319 LLVNIPAFKLYVYNNNKLDWTCNVVVGKPGANTVIFSNEVKYVVFAPYWNVPPGILVNEV 378 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKI 313 + ++++ YL N+ ++ G V ++W NF RQ PG NA+ K Sbjct: 379 LPAMKRNTGYLARQNMEVVTGSGSPVNAGSLNWARYSGGNFPYIIRQKPGGHNALGKVKF 438 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F + N Y+HDTP LF R + GC+RV L WLL+ TW++ I E + Sbjct: 439 LFPNEYNIYLHDTPSKGLFGENKRTFSHGCIRVSEPQHLAEWLLRKDSTWTQKKIVEAMN 498 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 K V L VPV+ Y +A+ D + FRDD+YG D + Sbjct: 499 GSKEKFVTLKERVPVYIGYFTAFVDSDGRLNFRDDVYGHDAKLAATL 545 >gi|307131496|ref|YP_003883512.1| putative carboxypeptidase [Dickeya dadantii 3937] gi|306529025|gb|ADM98955.1| predicted carboxypeptidase [Dickeya dadantii 3937] Length = 562 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 115/427 (26%), Positives = 198/427 (46%), Gaps = 28/427 (6%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 Y+ G+ S + ++ +++ + + S P S+ Sbjct: 135 YMQFVAGVEKNGNSWLYSSVPYKLSMPSAAMIEQWQQAVASGNGLAFMASLAPRHSQ--Y 192 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ A+ + WP+L L G+ S ++ L+E L+ +G L+ F Sbjct: 193 AKMHDALKTM--LTDNRPWPKLILADSLRPGDESSALPVLKEILLRTGMLNQDGAAMPLF 250 Query: 135 DA-------------YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 + V AVK FQ GL G++ T + +NV +R L +N+ Sbjct: 251 NEASSGNVSPLRYEGEVVEAVKRFQHSQGLQDDGVIGKRTRDWLNVSSQMRATLLALNIQ 310 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ + ++ ++VNIP SL +NG L S VIVG+ R+TP+++S ++ ++ N Sbjct: 311 RLRLVPDKV--SSGIVVNIPNYSLSYYQNGAEILSSRVIVGQPKRKTPLMNSSLSNVVMN 368 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIF 298 P W +P ++ ++D++ + QDP YL+ + ++ + + + +DW NF + Sbjct: 369 PPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSDWTESAQPIDPSMIDWPMVSAGNFPY 428 Query: 299 R--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 R Q PG N++ K + + Y+HDTP LF +R +SGCVRV +L L Sbjct: 429 RLRQAPGDSNSLGRYKFNMPNTDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASELAALL 488 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-V 415 L+D W+ I ++ TT V + VPV+F Y++AW D QFR DIY D+ V Sbjct: 489 LQDA-GWNNARISSTLEQGNTTYVAVRQRVPVNFYYLTAWVADDGKPQFRTDIYNYDDTV 547 Query: 416 HVGIIPL 422 +G + L Sbjct: 548 KIGALAL 554 >gi|237730888|ref|ZP_04561369.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906427|gb|EEH92345.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 622 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 117/408 (28%), Positives = 187/408 (45%), Gaps = 18/408 (4%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + S P + Sbjct: 204 YLHFIANIPVKGNRWLYSDKPYALTTPPISVINQWQVALDNGQLTSFVASLAPQHPQ--Y 261 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-- 132 A +++ + WP+L L G S + LRE L +G L+P+ S Sbjct: 262 AAMHESLLKL--VGDTRPWPQLTSTATLRPGEWSNDIPALREILRRTGMLEPAVSTSGKE 319 Query: 133 ---AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 +D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 320 GRGTYDRELVDAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPSE 379 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 380 L--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 437 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ + DP YL+ + ++ + +VDW + N FR Q PG Sbjct: 438 LARKDILPKVWNDPGYLERHGYTVMRGWNSKETIDPWQVDWATITASNLPFRFQQAPGAR 497 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 498 NSLGRYKFNMPSSDAIYLHDTPNHNLFQKDTRALSSGCVRVNKASELANMLLQDA-GWND 556 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 557 TRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGPDGRTQYRTDIYNYD 604 >gi|307545799|ref|YP_003898278.1| hypothetical protein HELO_3209 [Halomonas elongata DSM 2581] gi|307217823|emb|CBV43093.1| hypothetical protein HELO_3209 [Halomonas elongata DSM 2581] Length = 546 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 117/424 (27%), Positives = 189/424 (44%), Gaps = 26/424 (6%) Query: 18 LILPMGLSLVEKPIHASVLDE----IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 +L L + +++ I + V ID P Sbjct: 126 TLLTALTHLQRGKVDPQRINDEWDLSIEPPSLDLAAISRALDDGDVSAAIDLARPPYEP- 184 Query: 74 TIAQTEKAIAFYQDILSRGGWPEL--PIRPLHLGNSSVSVQRLRERLII----------S 121 Q + +A Y++I +GGWP L PL G++ V LRERL Sbjct: 185 -YEQLREGLAHYREIKRQGGWPALMNVEDPLRPGDTGTEVTALRERLAAIGNDQLVAADE 243 Query: 122 GDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 G +D + AV+ FQ H L G+V TL+A+N+ V+ RI Q++ Sbjct: 244 GYYPTIELQAPEPRVYDEALVEAVRRFQRHHLLADDGVVGPRTLKALNMSVERRIDQIRA 303 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 N+ R + LL + +VLV+I L R+ ++VG+ R+TP L S I + Sbjct: 304 NMERARWLL-HGLPESFVLVDIAGYDLRYFRPNGDTWRARIVVGQPYRRTPSLRSEITHL 362 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 NP W +P +I+++D++ +R+DP YL N+ ++ GK++ VDW+ P + Sbjct: 363 TINPTWTVPPTIMREDVLPKVRRDPGYLATKNLSVLSPSGKQLDPASVDWS--NPGGVML 420 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 RQ G N + + F + + Y+HDTP LF+ R +SGC+RV +++L L Sbjct: 421 RQQAGPNNPLGQLVVRFPNDHLVYLHDTPSRGLFSRSQRALSSGCIRVEGVLELAQLLFD 480 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 DT ++ ++ ++ KT V LA VPV Y + D + FR DIY D+ + Sbjct: 481 DTG--TQANVRRLIADGKTRNVLLARHVPVVLHYWTVQPEPDGELAFRPDIYDRDDALIE 538 Query: 419 IIPL 422 + Sbjct: 539 ALDR 542 >gi|28898690|ref|NP_798295.1| putative amidase [Vibrio parahaemolyticus RIMD 2210633] gi|28806908|dbj|BAC60179.1| putative amidase [Vibrio parahaemolyticus RIMD 2210633] Length = 529 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 102/397 (25%), Positives = 172/397 (43%), Gaps = 35/397 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LS++ I LD+ + ++ F+ A + P ++ ++ Sbjct: 159 TLSVLSNEITVGKLDQFLASLRSPLQMDASFNTVFASLSEFSQYQYPFYEQKGLS----- 213 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 +G+ + L ER+ I G D+ +D +E Sbjct: 214 ---------------------RVGDPIENKSTLVERMAIVGVDVSYIDSEIPQYDENLEL 252 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL+ G++ +T+ +N R+ L +N R + +++ V VN+ Sbjct: 253 AVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALNAERSRIWAKER--DNVVFVNV 310 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P I+ KD++ ++ Sbjct: 311 PGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVK 370 Query: 261 QDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL ++NI +I + ++W + P + RQ G NA+ K Sbjct: 371 RNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQASGSHNALGLYKFNMP 430 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LF R +SGCVRV N L L K R + Sbjct: 431 NPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAELLFKTQGLEERLEKKRESARSS 490 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V L +PVH +Y +AW ++ + +RDDIY D Sbjct: 491 TTSVPLGERIPVHIIYQTAWL-EEGTLYYRDDIYKYD 526 >gi|73537776|ref|YP_298143.1| hypothetical protein Reut_B3942 [Ralstonia eutropha JMP134] gi|72121113|gb|AAZ63299.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 557 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 106/421 (25%), Positives = 181/421 (42%), Gaps = 21/421 (4%) Query: 20 LPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDN--------FLARVDMGIDSDIPII 70 L + +H+ +D ++ ++ + + F+ R+ I P Sbjct: 104 LSDAMRRYLSDLHSGRVDPRKVHANFTAPPSTAFEPDSYLRAAVAGHRLPEAIREAAPSF 163 Query: 71 SKETIAQTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 A+A Y+ + ++ GW P LP L G + + + RL GD+ Sbjct: 164 P--LYGTLRDALAHYRTLAAQPGWDRTLPALPGGKLTSGQAYSGLAEMARRLQALGDMPA 221 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + V VK FQ RHGL+ G++ + TL +N R+RQ+++ + R++ Sbjct: 222 DAPAPKRYSGAVVDGVKAFQARHGLEADGVIGAGTLAQLNTTPAARVRQIELTMERLRWT 281 Query: 187 LEQKMGLRYVLVNIPAASLEAVENG----KVGLRSTVIVGRV-DRQTPILHSRINRIMFN 241 R ++VNIP L A + + L VIVG+ D +TP+ + I F+ Sbjct: 282 PLTDSP-RMIVVNIPEFMLRAYDYNGGKLDIKLEMKVIVGKALDTRTPLFKEDMRYIEFS 340 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 PYW +P SI + + + LR+DP Y + + + + ++ RQ Sbjct: 341 PYWNVPPSIARSETIPRLRRDPAYFTQQGFEFVSNGKAVTTLSDANLDAVLNGRMRIRQR 400 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG +NA+ K F + N Y+H TP P LF R + GC+RV + L ++L+D P Sbjct: 401 PGPMNALGDIKFVFPNNQNIYLHHTPTPQLFKRDRRDFSHGCIRVEEPVALAKFVLQDMP 460 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W+ I + + ++ V L +PV Y +A + D + F DIYG D + + Sbjct: 461 GWTEERIRQAMTKGQSNTVALQQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLDQALS 520 Query: 422 L 422 Sbjct: 521 Q 521 >gi|328474745|gb|EGF45550.1| putative amidase [Vibrio parahaemolyticus 10329] Length = 513 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 103/397 (25%), Positives = 171/397 (43%), Gaps = 35/397 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIV-NDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LS++ I LD+ + + + F+ A + P ++ Sbjct: 143 TLSVLSNEITVGKLDQFLASLRSPLQKDASFNTVFASLSEFSQYQYPFYEQK-------- 194 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 L +G+ + L ER+ I G D+ +D +E Sbjct: 195 ------------------GLLRIGDPIENKSTLVERMAIVGVDVSYIDSEIPQYDENLEL 236 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL+ G++ +T+ +N R+ L +N R + +++ V VN+ Sbjct: 237 AVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALNAERSRIWAKER--DNVVFVNV 294 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P I+ KD++ ++ Sbjct: 295 PGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVK 354 Query: 261 QDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL ++NI +I + ++W + P + RQ G NA+ K Sbjct: 355 RNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQASGSHNALGLYKFNMP 414 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LF R +SGCVRV N L L K R + Sbjct: 415 NPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAELLFKTQGLEERLEKKRESARSS 474 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V L +PVH +Y +AW ++ + +RDDIY D Sbjct: 475 TTSVPLGERIPVHIIYQTAWL-EEGTLYYRDDIYKYD 510 >gi|227329504|ref|ZP_03833528.1| hypothetical protein PcarcW_20031 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 579 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 109/431 (25%), Positives = 181/431 (41%), Gaps = 40/431 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +IV+ + + S P S+ Sbjct: 139 YLQFVSGVENSGNDWLYSSVPYRLQSPALNIVSQWQQAVKSGTSAAYVVSLAPQHSQ--Y 196 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A+ +A+ + WP L L S + LRE L +G L Sbjct: 197 AKMHEALKTM--LTDNRPWPSLSLAESLRPEQQSRELAVLREILQRTGMLSSTESITLFN 254 Query: 127 ------------------SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 S + + AVK FQ GL+ G++ T + +NV Sbjct: 255 ENTAATTVSTGQVPLVDGSGTSDDRYTGELVDAVKRFQHWQGLEDDGVIGKRTRDWLNVS 314 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 +R L +N+ R++ L + ++VNIP SL ++G L S VIVG+ R+T Sbjct: 315 PQMRATLLALNIQRLRLLPDNV--HTGIMVNIPNYSLIYYQDGAERLSSRVIVGQPKRKT 372 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEE 285 P++ S + ++ NP W +P ++ ++D++ + +DP YL+ + ++ + + Sbjct: 373 PLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGYLQRHGYTVLSGWSQDAEAIDPSM 432 Query: 286 VDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 +DW + RQ PG N++ K + Y+HDTP LF +R +SGC Sbjct: 433 IDWQMVSAERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTPNHNLFQRDIRALSSGC 492 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 VRV +L LL+D W+ I + TT V + +PV+ Y++AW +D Sbjct: 493 VRVNKASELASMLLQDA-GWNNSRISSTLDQGNTTFVSMKHRIPVNLYYLTAWVAEDGRP 551 Query: 404 QFRDDIYGLDN 414 QFR DIY D+ Sbjct: 552 QFRTDIYNYDD 562 >gi|260363711|ref|ZP_05776495.1| putative amidase [Vibrio parahaemolyticus K5030] gi|260879722|ref|ZP_05892077.1| putative amidase [Vibrio parahaemolyticus AN-5034] gi|260898804|ref|ZP_05907245.1| putative amidase [Vibrio parahaemolyticus Peru-466] gi|260901617|ref|ZP_05910012.1| putative amidase [Vibrio parahaemolyticus AQ4037] gi|308086665|gb|EFO36360.1| putative amidase [Vibrio parahaemolyticus Peru-466] gi|308093310|gb|EFO43005.1| putative amidase [Vibrio parahaemolyticus AN-5034] gi|308108675|gb|EFO46215.1| putative amidase [Vibrio parahaemolyticus AQ4037] gi|308113388|gb|EFO50928.1| putative amidase [Vibrio parahaemolyticus K5030] Length = 513 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 102/397 (25%), Positives = 172/397 (43%), Gaps = 35/397 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LS++ I LD+ + ++ F+ A + P ++ ++ Sbjct: 143 TLSVLSNEITVGKLDQFLASLRSPLQMDASFNTVFASLSEFSQYQYPFYEQKGLS----- 197 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 +G+ + L ER+ I G D+ +D +E Sbjct: 198 ---------------------RVGDPIENKSTLVERMAIVGVDVSYIDSEIPQYDENLEL 236 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL+ G++ +T+ +N R+ L +N R + +++ V VN+ Sbjct: 237 AVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALNAERSRIWAKER--DNVVFVNV 294 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P I+ KD++ ++ Sbjct: 295 PGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVK 354 Query: 261 QDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL ++NI +I + ++W + P + RQ G NA+ K Sbjct: 355 RNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQASGSHNALGLYKFNMP 414 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LF R +SGCVRV N L L K R + Sbjct: 415 NPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAELLFKTQGLEERLEKKRESARSS 474 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V L +PVH +Y +AW ++ + +RDDIY D Sbjct: 475 TTSVPLGERIPVHIIYQTAWL-EEGTLYYRDDIYKYD 510 >gi|317491480|ref|ZP_07949916.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921027|gb|EFV42350.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 608 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 123/458 (26%), Positives = 189/458 (41%), Gaps = 67/458 (14%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+S + S + I E ++VN+ + R+ + S P + Sbjct: 140 YLQFVSGVSATKGSWLYSSVPYAIAEPPATLVNNWQLSVRDGRLATFVQSLAPSHPQ--Y 197 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLD--------- 125 A KA+ + WP + P L G+ S + LRE L +G L Sbjct: 198 AAMHKALKDL--LADTRPWPTVNDGPSLKPGDLSPDMPALREVLQRTGMLTEKGNVKSPT 255 Query: 126 --------------------------------------------PSKGLSVAFDAYVESA 141 P + + A Sbjct: 256 PVPEAQPLQSPASQEPNAVISPSTTAVSELTQQPTPEATPAKTMPVSATDNRYTPELVEA 315 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ GL G++ T E +NV R L +N+ R++ L + ++VNIP Sbjct: 316 VKRFQQWQGLASDGVIGKRTREWLNVSPQTRATLLALNIQRLRILPGEV--DTGIMVNIP 373 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 SL +NG L S VIVGR R+TP+++S +N ++ NP W +P ++I++D++ + Sbjct: 374 NYSLIYYQNGTEVLTSRVIVGRPTRKTPLMNSELNNVVVNPPWNVPTTLIREDIVPKAMR 433 Query: 262 DPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFY 316 DP Y + + + V +DW S P NF +R Q PG N++ K Sbjct: 434 DPGYFERHGYRLFSGWSNDAEVVDPYMIDWASVSPRNFPYRIQQAPGVNNSLGRYKFNMP 493 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 S++ Y+HDTP LF +R +SGCVRV L LL+D W+ + +K Sbjct: 494 SQDAIYLHDTPNHGLFEKDIRALSSGCVRVNKASTLANMLLQDA-GWNDARVSSALKEGN 552 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V + +PV Y++AW +D QFR DIY D+ Sbjct: 553 TKYVPIRHRIPVRLYYLTAWVSEDGKPQFRTDIYNYDD 590 >gi|296103072|ref|YP_003613218.1| hypothetical protein ECL_02728 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057531|gb|ADF62269.1| hypothetical protein ECL_02728 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 607 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 124/448 (27%), Positives = 196/448 (43%), Gaps = 43/448 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ + S + S++N + + I S P + Sbjct: 165 YLQFVAGIPVNGNRWLYSQKPYKLATPALSVINQWQLALDNGDLPRFIASLAPAHPQ--Y 222 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL---- 130 A +++ + + WP++ L G S V +RE + SG L+ + Sbjct: 223 ATMHQSL--LELVADSRPWPQVRGTTTLRPGQWSSDVPAIREIMKRSGILESGPKIALPG 280 Query: 131 -------------------------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+D + +AVK FQ GL G++ ST + + Sbjct: 281 DDTQSAVVSPSAPVKEKKAVAQSNKPAAYDRELVAAVKQFQAAQGLGADGVIGPSTRDWL 340 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 NV R L +N+ R++ L ++VNIPA SL +NG L S VIVGR D Sbjct: 341 NVSPAQRAGVLALNIQRLRLLPGTL--STGIMVNIPAYSLVYYQNGSEVLASRVIVGRPD 398 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFV 283 R+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ +N +I + Sbjct: 399 RKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHNYTVIRGWNSKETIDP 458 Query: 284 EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 VDW++ P N FR Q PG N++ K S + Y+HDTP LF R +S Sbjct: 459 WMVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDARALSS 518 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ +D Sbjct: 519 GCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRHNIPVNLYYLTAFVGEDG 577 Query: 402 IIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 Q+R DIY D G LP+ + Sbjct: 578 RTQYRTDIYNYDLTARSGAQILPKAEQL 605 >gi|152991962|ref|YP_001357683.1| hypothetical protein SUN_0366 [Sulfurovum sp. NBC37-1] gi|151423823|dbj|BAF71326.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 712 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 113/351 (32%), Positives = 186/351 (52%), Gaps = 8/351 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLD-PSKGLSV 132 + +A+ Y++I GGW +LP + L G SS V LRERL I GD S Sbjct: 354 YDRMLQALKRYKEIAENGGWKKLPEFKNLKPGMSSSVVPALRERLAIEGDYVCDSNETGN 413 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 + + AVK FQ RHGL+ +G + T +A+NV + ++++L++NL RIK + ++ Sbjct: 414 RYRGCLVDAVKKFQARHGLEAAGFIGKMTRKALNVSAEEKVKKLKLNLDRIKWI-KRDNE 472 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++ VNIP+ + ++ ++ VI GR +TPI + R+ I+ NPYW IP SII+ Sbjct: 473 RYHIYVNIPSFHMYMYDDKEMIRTMRVITGRKGHETPIFYGRVRTIVLNPYWRIPPSIIR 532 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSP--EPPNFIFRQDPGKINA 307 + + L++DP Y NI + + +V +V+W+ + P + F Q PG+ NA Sbjct: 533 HETIPKLQKDPGYTNKKNIEIHTGYSEHSPKVNPYKVNWHKYGRKLPPYRFMQSPGEKNA 592 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F ++ + YMHDT + LF R + GCVR++ +L + P Sbjct: 593 LGKVKYLFPNKYSVYMHDTNQRYLFVKDYRALSHGCVRLQKPFELLETFAEIEPKIDYER 652 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +E++ K TP +L+ +PV VY++A K+ + F DD+YG D + + Sbjct: 653 SKEILDENKKTPYRLSKSIPVDIVYLTALVSKEGTVMFYDDVYGYDRMQMA 703 >gi|283784752|ref|YP_003364617.1| hypothetical protein ROD_09941 [Citrobacter rodentium ICC168] gi|282948206|emb|CBG87773.1| putative exported protein [Citrobacter rodentium ICC168] Length = 624 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 124/432 (28%), Positives = 191/432 (44%), Gaps = 42/432 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ + S + S++N + + I S P + Sbjct: 182 YLQFVAGIPVNGNRWLYSNKPYKLATPALSVINQWQLALDNGELPRFIASLAPAHPQ--Y 239 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---- 130 A+ +++ + WP+L L G S V LRE L SG LD + Sbjct: 240 ARMHQSLLAL--VGDSRPWPQLRSAATLRPGQWSSDVPALREILKRSGMLDGGPKIALPG 297 Query: 131 -------------------------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+D + +AVK FQ GL G + +T M Sbjct: 298 DDAQNVVVSPSAPVKEKQAAVVSNKPAAYDRELVAAVKQFQAWQGLGADGAIGPATRYWM 357 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 NV R L +N+ R++ L + ++VNIPA SL +NG L S VIVGR D Sbjct: 358 NVTPAQRAGGLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGSQVLASRVIVGRPD 415 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFV 283 R+TP++ S +N ++ NP W +P ++ +KD++ L DP YL+ + ++ + + Sbjct: 416 RKTPMMSSALNNVVVNPPWNVPPTLARKDILPKLWNDPGYLERHGYTVMRGWNSKDAIDP 475 Query: 284 EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 +VDW++ P N FR Q PG N++ K S + Y+HDTP LF+ R +S Sbjct: 476 WQVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFSKDARALSS 535 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ D Sbjct: 536 GCVRVNKASELANMLLQDA-GWNDTRISDALKQGNTRYVTIRQTIPVNLYYLTAFVGADG 594 Query: 402 IIQFRDDIYGLD 413 Q+R DIY D Sbjct: 595 RTQYRTDIYNYD 606 >gi|153839457|ref|ZP_01992124.1| putative amidase [Vibrio parahaemolyticus AQ3810] gi|149747014|gb|EDM58002.1| putative amidase [Vibrio parahaemolyticus AQ3810] Length = 509 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 102/397 (25%), Positives = 172/397 (43%), Gaps = 35/397 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LS++ I LD+ + ++ F+ A + P ++ ++ Sbjct: 139 TLSVLSNEITVGKLDQFLASLRSPLQMDASFNTVFASLSEFSQYQYPFYEQKGLS----- 193 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 +G+ + L ER+ I G D+ +D +E Sbjct: 194 ---------------------RVGDPIENKSTLVERMAIVGVDVSYIDSEIPQYDENLEL 232 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL+ G++ +T+ +N R+ L +N R + +++ V VN+ Sbjct: 233 AVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALNAERSRIWAKER--DNVVFVNV 290 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P I+ KD++ ++ Sbjct: 291 PGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVK 350 Query: 261 QDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL ++NI +I + ++W + P + RQ G NA+ K Sbjct: 351 RNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQASGSHNALGLYKFNMP 410 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LF R +SGCVRV N L L K R + Sbjct: 411 NPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAELLFKTQGLEERLEKKRESARSS 470 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V L +PVH +Y +AW ++ + +RDDIY D Sbjct: 471 TTSVPLGERIPVHIIYQTAWL-EEGTLYYRDDIYKYD 506 >gi|269961715|ref|ZP_06176076.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833580|gb|EEZ87678.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 530 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 102/398 (25%), Positives = 176/398 (44%), Gaps = 34/398 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LSL+ I LDE +NE +++ F+ A + + P+ ++ + Sbjct: 159 TLSLLSNEITVGKLDEFLNELRSPLQMDESFNTAYASLSTYAKFEFPLYQQD------QR 212 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 +A +G+ + R+ I G D+ + +D +E Sbjct: 213 LAR-------------------VGDELFDKASMIARMQIVGVDVGHLDTETTLYDENLEL 253 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV FQ HGL G++ +T+ +N R+ L +N R + +++ V VN+ Sbjct: 254 AVMEFQRIHGLKQDGIIGPNTIRWINFSPQQRLHSLALNAERSRIWAKER--DNVVFVNV 311 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VG+ R+TPI+ ++ ++ NP W +P I+ KD++ ++ Sbjct: 312 PGYEVTYWHDGQPLFESKVVVGKASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVK 371 Query: 261 QDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL +NI +I + ++W + P + RQ G NA+ K Sbjct: 372 RNPMYLMQHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQSSGSHNALGLYKFNMP 431 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LFN R +SGCVRV + L L K R + R Sbjct: 432 NPQAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKKRQNGRRS 491 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V L+ + VH +Y +AW ++ + +RDDIY D+ Sbjct: 492 NTSVPLSERIQVHIIYQTAWL-EEGTLYYRDDIYQYDD 528 >gi|311747884|ref|ZP_07721669.1| putative peptidoglycan binding protein [Algoriphagus sp. PR1] gi|126575878|gb|EAZ80188.1| putative peptidoglycan binding protein [Algoriphagus sp. PR1] Length = 548 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 105/419 (25%), Positives = 195/419 (46%), Gaps = 17/419 (4%) Query: 18 LILPMGLSLVEKPIHASVLD------EIINESYHSIVN--DRFDNFLAR--VDMGIDSDI 67 + L + + + +D + + + +A + ++S Sbjct: 133 IFLSDAFFKLARNLEIGKVDPSQFGEDWEIARKEPTNDYPTLLEKAVATKAIRKSLESLY 192 Query: 68 PIISKETIAQTEKAIAFYQDILSRGG--WPELP-IRPLHLGNSSVSVQRLRERLIISGDL 124 P S + + I + + W ++ + +H+G+S+ + RLRERLI L Sbjct: 193 PKFS--IYKKGREVIRELSEKVKEDTLNWKKVKISKSIHVGDSNSDIPRLRERLIYWELL 250 Query: 125 DPSKGLSV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + +D+ + +K FQ HGLD G++ T +A N R+ + +VN+ R+ Sbjct: 251 EEYAVQDEKVYDSIMMDGIKDFQGTHGLDIDGVIGPQTAQAFNDSPKDRLNKARVNMERL 310 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + ++LVN+ L+ ++N + VIVGR ++PI + ++ I+F+PY Sbjct: 311 RWLPDTVKNAEFILVNLANFQLDYLKNLDTLISERVIVGRKYHESPIFMAEMSYIVFSPY 370 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W IP SI +++ +R++P Y+ N+ ++ GK + ++WNS + ++ RQ PG Sbjct: 371 WNIPYSITHSEIIPSVRKNPNYIAAKNMEVVTSSGKVLDPSTINWNS-KSFPYMVRQKPG 429 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ K F +++N Y+HDT LF R + GC+R++N D LL P W Sbjct: 430 PGNSLGLVKFMFPNKHNVYIHDTNARSLFALDDRARSHGCIRIQNPQDFAKELLSYDPYW 489 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + I+E + V+L +PV VY++ W+ FR+DIY D + + Sbjct: 490 TSEKIDEAMHQTHEKVVQLDRHIPVVLVYLTFWADSKGEAHFREDIYERDEEVLVALGK 548 >gi|271500170|ref|YP_003333195.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] gi|270343725|gb|ACZ76490.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] Length = 567 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 110/429 (25%), Positives = 194/429 (45%), Gaps = 28/429 (6%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 Y+ G+ + + +++ + I S P S+ Sbjct: 140 YMQFVAGVEKNGNSWLYGSVPYKLALPPVAMMEQWQRAMASGNGAAFIASLAPHHSQ--Y 197 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ A+ ++ + WP+L L G+ S + LRE L+ +G L + F Sbjct: 198 AKMHVALKDM--LMDKRPWPKLMLADSLRPGDESNGLPVLREILLRTGMLSQNSAAMPLF 255 Query: 135 DA-------------YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 + + AVK FQ GL G++ T + +NV +R L +N+ Sbjct: 256 NEASPGNASPLRYEGELVEAVKRFQHSQGLQDDGVIGKRTRDWLNVSSQMRATLLALNIQ 315 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ + + ++VNIP SL ++G L S VIVG+ R+TP++ + ++ ++ N Sbjct: 316 RLRLVPDNV--NSGIMVNIPNYSLIYYQHGAEILSSRVIVGQPKRKTPLMSTSLSNVVMN 373 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP--PNF 296 P W +P ++ ++D++ + QDP YL+ + ++ + + + +DW + Sbjct: 374 PPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSDWTESAQPIDPSMIDWPMVSASNFPY 433 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG N++ K + ++ Y+HDTP LF +R +SGCVRV +L L Sbjct: 434 RLRQAPGDSNSLGRYKFNIPNTDSIYLHDTPNHALFQKDIRALSSGCVRVNKASELAALL 493 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-V 415 L+D W+ I ++ TT V + +PV+F Y++AW D QFR DIY D+ V Sbjct: 494 LQDA-GWNNARISSTLEQGNTTYVAVRQRIPVNFYYLTAWVADDGKPQFRTDIYNYDDTV 552 Query: 416 HVGIIPLPE 424 G + L + Sbjct: 553 KTGALALSK 561 >gi|253688167|ref|YP_003017357.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754745|gb|ACT12821.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 576 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 110/428 (25%), Positives = 186/428 (43%), Gaps = 37/428 (8%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +IV+ + + S P S+ Sbjct: 139 YLQFVSGVERNGNDWLYSSVPYRLQSPALNIVSQWQQAVKSGTSAAYVVSLAPQHSQ--Y 196 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--- 131 A+ +A+ + WP L L S + LRE L +G L ++ ++ Sbjct: 197 AKMHEALKTM--LTDNRPWPSLNLTESLRPEQQSRELAVLREILQRTGMLSSTESITLFN 254 Query: 132 --------------------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + + AVK FQ GL+ G++ T + +NV + Sbjct: 255 ENTAATTIPTGQSPLVENGAAIYTGELVEAVKRFQHWQGLEDDGVIGKRTRDWLNVSPQM 314 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R L +N+ R++ L + ++VNIP SL ++G L S VIVG+ R+TP++ Sbjct: 315 RATLLALNIQRLRLLPDNV--HTGIMVNIPNYSLIYYQDGAERLSSRVIVGQPKRKTPLM 372 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDW 288 S + ++ NP W +P ++I++D++ + +DP YL+ + ++ + + +DW Sbjct: 373 SSSLYNVVVNPPWNVPTTLIRQDIIPKVVRDPGYLQRHGYTVLSGWSQDAEVIDPSMIDW 432 Query: 289 NSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 P + RQ PG N++ K + Y+HDTP LF +R +SGCVRV Sbjct: 433 QIVSPERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTPNHNLFQRDIRALSSGCVRV 492 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 +L LL+D W+ I + TT V + +PV+ Y++AW +D QFR Sbjct: 493 NKASELASMLLQDA-GWNNSRISSTLDQGNTTFVSMKHRIPVNLYYLTAWVAEDGRPQFR 551 Query: 407 DDIYGLDN 414 DIY D+ Sbjct: 552 TDIYNYDD 559 >gi|296446244|ref|ZP_06888191.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296256281|gb|EFH03361.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 476 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 195/354 (55%), Gaps = 7/354 (1%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 P + ET T A Y I GGWP++ L G+S +V LR+RL + GDL Sbjct: 118 TPALQPETFFTTSLASERYAAIADAGGWPKV-GAALKPGSSGRAVAALRKRLAVEGDLPS 176 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + +D + AVK FQ R GL +G+V +TL ++VP ++R RQL + R+ Sbjct: 177 AAAAGEGWDGALTQAVKHFQFRMGLKQTGVVAGATLRELDVPANVRFRQLASSAQRLAG- 235 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 G RY++VNIP+A+++AVENG+V R T IVG VD +P + +R+ + NP W + Sbjct: 236 NNFPFGPRYIVVNIPSAAVDAVENGRVVRRYTAIVGGVDHPSPEVEARVGAVNLNPTWTV 295 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SII+ ++M ++++P YL I ++D G EV + ++W + N+ RQD G N Sbjct: 296 PVSIIKNEIMPKMQKNPSYLAKLRIRVLDNHGAEVDPKTINWANERAANYTLRQDSGAGN 355 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT---- 362 ++ S +I +++ YMHDTP LF + RF + GCVRV + DL WLL+ Sbjct: 356 SLGSIRIAMPNKHAVYMHDTPSKRLFASDYRFLSHGCVRVEGVYDLAAWLLQGASGSPSG 415 Query: 363 -WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 W + I + + V L VPV +VY++ W+ D + FR+D+YG+D V Sbjct: 416 QWDKAAILAKIAGGERQDVALPKPVPVVWVYMTGWASADGTVHFRNDVYGVDAV 469 >gi|114047885|ref|YP_738435.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-7] gi|113889327|gb|ABI43378.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-7] Length = 560 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 212/438 (48%), Gaps = 25/438 (5%) Query: 14 FFVYL---ILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRF-----DNFLARVDMGID 64 F V L I+ + L+ ++ S+L + N + H + V I Sbjct: 120 FEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDETHLDFDTTLKQLEEHIKAHTVADAIA 179 Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD 123 P I+ Q ++ +A Y+D+ +R + +P + G++S SVQ + RL G Sbjct: 180 GLAPKIAP--YQQLKQYLAQYKDLAARYPFSPIPYTEVIKPGSTSPSVQGIATRLTELGY 237 Query: 124 LDPSKGLSV--------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L S +D+ +E+AV+ FQ H L G++ + T+ A+NVP R+ Q Sbjct: 238 LAASAPADNSAAVSQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQRVEQ 297 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 +++NL R + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ S++ Sbjct: 298 IRINLERARWL-SANLRANYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKL 356 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--EP 293 ++ NP W +PRSI +++ LR+DP YL+ + +++ G V +DW+S + Sbjct: 357 KYVVVNPTWTVPRSI-STEIINHLRKDPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKN 415 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + F Q+PG+ N++ K F ++ + Y+HDTP LF R + GC+RV++ + L Sbjct: 416 FPYWFVQEPGEDNSLGVVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLA 475 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL WS + + KT + L + + +Y + KD I+F +D+Y D Sbjct: 476 DKLLSANANWSSNTLSSKLSEGKTENLFLDEPLDILIMYWTVTL-KDGKIKFYNDVYKRD 534 Query: 414 NVHVGIIPLPEDHPIDSD 431 V + + P + +D Sbjct: 535 PVLIEALNRPTYEGVLAD 552 >gi|312114029|ref|YP_004011625.1| peptidoglycan-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311219158|gb|ADP70526.1| Peptidoglycan-binding domain 1 protein [Rhodomicrobium vannielii ATCC 17100] Length = 428 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 149/390 (38%), Positives = 219/390 (56%), Gaps = 9/390 (2%) Query: 34 SVLDEIINESYHSI-VND-RFDNFLAR-VDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 S +D+ + D R + + P ++KE IA T+ AI Y +I++ Sbjct: 33 SSIDDWLGFDQSDDSWEQPMRDRAFQREWETQPERGFPTLAKENIATTKTAIKQYAEIVA 92 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 RGGWP+LP L G S +V +LR RL ++GDL G FD+YVE AVK Q RHG Sbjct: 93 RGGWPQLPPIELRTGMSHPAVVQLRTRLQVTGDLQAYGGYPEVFDSYVEQAVKRAQERHG 152 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + P+G +D +T+EA+NVP R+RQL+ NL R++ L+ +YV+VNIPAA +EAV N Sbjct: 153 IPPTGFLDQTTIEALNVPASARLRQLRTNLARLQSLVPGTPAGKYVIVNIPAAQIEAVNN 212 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 +V R +VG+ DR +P+L+S I I FN WV+P ++++ D++ R L Sbjct: 213 NQVISRHAGVVGKPDRPSPLLNSAIEEINFNKEWVVPPTVLKYDLVPKGRGGQDVLAKYK 272 Query: 271 IHMI-----DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 I +KGK++ ++DW+S P + + Q PG N + KI F S YMHD Sbjct: 273 IDAYATHEDYQKGKKLDASQIDWSSDAPLRYFYVQAPGDENPLGFAKINFASPQGVYMHD 332 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP +F R ++SGC+RV+NI L WLL+D WS + + ++ + V+L Sbjct: 333 TPGQSVFQRSFRADSSGCIRVQNIHQLVAWLLEDN-GWSVQQVLRMKQSGERLFVRLKKR 391 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 VP+++ YI+AWS D +QFR DIY D V Sbjct: 392 VPLYWTYITAWSTPDGTVQFRRDIYRKDGV 421 >gi|89068811|ref|ZP_01156194.1| hypothetical protein OG2516_03630 [Oceanicola granulosus HTCC2516] gi|89045581|gb|EAR51644.1| hypothetical protein OG2516_03630 [Oceanicola granulosus HTCC2516] Length = 550 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 113/402 (28%), Positives = 187/402 (46%), Gaps = 12/402 (2%) Query: 19 ILPMGLSLVEKPIHASVLDEIINE--SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L L + + +I Y + + + P S E Sbjct: 137 FLAFARDLQSGVLDPGEVIPLIKREVLYMDPLEVLKGFADGNPMGYLRALAPT-SPEYQR 195 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + + + + G P + L G + V LR+RL G L PS +S+ FDA Sbjct: 196 LLRARMEMQRQLNAGGYGPTVSA-SLERGATGEQVVALRDRLTAMGFLAPS--VSMEFDA 252 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +E+AV+ FQ+ GL G+V +TL+A+NVP++ R+R + V + R + + + G R++ Sbjct: 253 ALEAAVRRFQVSVGLTADGVVGGATLDAINVPLEERLRMVLVAMERERWMNNLERGQRHI 312 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ + V+ G V R+ ++G DRQTP ++ ++ NP W +PRSI + Sbjct: 313 WVNLVDYTAAVVDEGHVTFRTKSVIGAGDADRQTPEFSDVMDHMVINPSWYVPRSITVNE 372 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTK 312 + LR++ + ++ +ID G+ V V+++ + RQ PG NA+ K Sbjct: 373 YLPSLRRNRNAVS--HLQVIDRNGRVVNRNSVNFSQYNARTFPYSMRQPPGSSNALGQVK 430 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F +R N Y+HDTP LF+ VR + GC+R+ + + LL + + Sbjct: 431 FMFPNRYNIYLHDTPSQHLFSETVRTFSHGCIRLDDPYEFAHALLAAQEDDPVGFFQTRL 490 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + T V L T VPVH VY +A++ D ++ FR D YG D Sbjct: 491 DSGNETRVNLETPVPVHLVYRTAFTTADGVVNFRPDAYGRDG 532 >gi|218781317|ref|YP_002432635.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfatibacillum alkenivorans AK-01] gi|218762701|gb|ACL05167.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfatibacillum alkenivorans AK-01] Length = 563 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 116/413 (28%), Positives = 191/413 (46%), Gaps = 13/413 (3%) Query: 19 ILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNF--LARVDMGIDSDIPIISKETI 75 L G L+ ++ ++ + + + V+ + S P Sbjct: 149 FLIYGAHLLGGKVNPETIEPDWTAGKREADLPALLAEALKTNDVEKALKSLAPQ--DVAY 206 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VA 133 + + + + + LG LR RL +G L Sbjct: 207 RSMQDLLKQLRAAAPQPSVRLVQTAPSFKLGYRGPQTAALRARLAAAGFLGQDSEQDKEV 266 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 F+ +E+A+K FQ GL+ G+ +TL A+N I ++ NL R + + Q +G Sbjct: 267 FNESLEAALKKFQASWGLEADGVCGPATLHAVNRSEKDNIAAIRANLERWRWMP-QNLGD 325 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++LVNI L VENG+ L IVG++ R+TP+ R+ ++ +PYW +P SI +K Sbjct: 326 RHILVNIADFHLAVVENGEELLAMKAIVGKLYRKTPVFSGRLTYLVISPYWDVPPSIARK 385 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSP--EPPNFIFRQDPGKINAM 308 D + L+++DP Y N+ + G +E+ VDW + + RQ PG NA+ Sbjct: 386 DKLPLMQKDPNYFTANHFLVYQGWGADSREIDPASVDWKALGPNNFPYRLRQKPGPGNAL 445 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F +++N Y+HDTP LF R +SGC+R+++ I L +LLKD P W+R I Sbjct: 446 GRIKFMFPNKHNVYIHDTPSHDLFAKSQRNFSSGCIRIQDPIGLAEYLLKDAPGWNREAI 505 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 E+ V + V L+ +PVH +Y +A+ + FR+DIYG D + + Sbjct: 506 EDAVDNKIEKTVSLSRPIPVHIMYFTAFGDTRGAVHFRNDIYGRDARLLEALD 558 >gi|27377895|ref|NP_769424.1| hypothetical protein bll2784 [Bradyrhizobium japonicum USDA 110] gi|27351041|dbj|BAC48049.1| bll2784 [Bradyrhizobium japonicum USDA 110] Length = 449 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 145/363 (39%), Positives = 206/363 (56%), Gaps = 3/363 (0%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRE 116 + P + + + + A Y D+ RGGWP +P LG + LR+ Sbjct: 67 SAAALAMTHEPTYDEGSAQRIKDAALSYSDLAVRGGWPTIPADAKFALGVQGANDDLLRK 126 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 RLI+SGDL S AFD + AVK FQ RHGL P+GMV TL AMNV V RIRQL Sbjct: 127 RLIVSGDLSAD-KASGAFDQDLADAVKRFQARHGLAPTGMVTPRTLAAMNVSVQKRIRQL 185 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 + +L R++ + G RYV+VNIPAA EAVEN V R VIVG+ ++ +P L ++I Sbjct: 186 EASLQRLEN-MNFGFGQRYVVVNIPAAFAEAVENDVVVRRYRVIVGKTEKPSPTLTAQIT 244 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 ++ NP W +P SI + ++ A +R+DP YL ++ ++D + VDW+ PNF Sbjct: 245 SVVLNPTWTVPSSIAKTEISAHMRKDPTYLSRMHMEVLDAHDNPIDPHSVDWSGTHTPNF 304 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ G NA+ + KI+ + + YMHDT + LF++ RF++ GC RV N+ DL WL Sbjct: 305 TVRQQNGTFNALGAVKIDMPNAYSVYMHDTNQRNLFSDDYRFDSHGCSRVDNVRDLAAWL 364 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 LKD P WSR I+ + T + V +A +VPV + Y++AW KD +QFR+D+Y D Sbjct: 365 LKDQPKWSRAAIDAEIATGQHLDVAMAKKVPVAWTYLTAWMTKDQTVQFRNDVYNQDEQL 424 Query: 417 VGI 419 + Sbjct: 425 LEA 427 >gi|113970655|ref|YP_734448.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-4] gi|113885339|gb|ABI39391.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-4] Length = 560 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 115/438 (26%), Positives = 213/438 (48%), Gaps = 25/438 (5%) Query: 14 FFVYL---ILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRF-----DNFLARVDMGID 64 F V L I+ + L+ ++ S+L + N + H + V I Sbjct: 120 FEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDETHLDFDTTLKQLEEHIKAHTVADAIA 179 Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD 123 P I+ Q ++ +A Y+D+++R + +P + G++S SVQ + RL G Sbjct: 180 GLAPKIAP--YQQLKQYLAQYKDLVTRYPFSPIPYTEVIKPGSTSPSVQGIATRLTELGY 237 Query: 124 LDPSKGLSV--------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L S +D+ +E+AV+ FQ H L G++ + T+ A+NVP R+ Q Sbjct: 238 LAASAPADNSAAVNQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQRVEQ 297 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 +++NL R + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ S++ Sbjct: 298 IRINLERARWL-SANLPANYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKL 356 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--EP 293 ++ NP W +PRSI +++ LR+DP YL+ + +++ G V +DW+S + Sbjct: 357 KYVVVNPTWTVPRSI-STEIINHLRKDPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKN 415 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + F Q+PG+ N++ K F ++ + Y+HDTP LF R + GC+RV++ + L Sbjct: 416 FPYWFVQEPGEDNSLGVVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLA 475 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL WS + + KT + L + + +Y + KD I+F +D+Y D Sbjct: 476 DKLLSANANWSSNTLSSKLSEGKTENLFLDEPLDILIMYWTVTL-KDGKIKFYNDVYKRD 534 Query: 414 NVHVGIIPLPEDHPIDSD 431 V + + P + +D Sbjct: 535 PVLIEALNRPTYEGVLAD 552 >gi|283833784|ref|ZP_06353525.1| putative periplasmic protein [Citrobacter youngae ATCC 29220] gi|291070449|gb|EFE08558.1| putative periplasmic protein [Citrobacter youngae ATCC 29220] Length = 583 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 115/408 (28%), Positives = 185/408 (45%), Gaps = 18/408 (4%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ I P + Sbjct: 165 YLHFIANIPVKGNHWLYSNKPYVLATPPISVINQWQVALDNGQLTSFIAGLAPQHPQ--Y 222 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--- 131 A +++ + WP+L L G S + LRE L +G L+ + Sbjct: 223 AAMHESLLKL--VSDTRPWPQLTSTSTLRPGEWSNDIPALREILRRTGMLESVVSTAAKE 280 Query: 132 --VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 A+ + + AVK FQ GL G + +T + +NV R L +N+ R++ L Sbjct: 281 GRSAYGSELVEAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPGD 340 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 341 L--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 398 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ + DP YL+ + ++ + +VDW + N FR Q PG Sbjct: 399 LARKDILPKVWNDPGYLERHGYTVMRGWNSKETIDPWQVDWATITASNLPFRFQQAPGAR 458 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 459 NSLGRYKFNMPSSDAIYLHDTPNHNLFQKDTRALSSGCVRVNKASELANMLLQDA-GWND 517 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 518 TRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRTQYRTDIYNYD 565 >gi|227111943|ref|ZP_03825599.1| hypothetical protein PcarbP_03208 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 578 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 107/430 (24%), Positives = 182/430 (42%), Gaps = 39/430 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + ++V+ + + S P S+ Sbjct: 139 YLQFVSGVERSGNDWLYSSVPYRLQSPTLNVVSQWQQAVKSGTSAAYVVSLAPQHSQ--Y 196 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPS------- 127 A+ +A+ + WP L L S + LRE L +G L + Sbjct: 197 AKMHEALKTM--LTDNRPWPSLNLAESLRPEQQSRELAVLREILQRTGMLSSTESITLFN 254 Query: 128 ------------------KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + + + AVK FQ GL+ G++ T + +NV Sbjct: 255 ENTAATTVSTGQAPLVEGGAIDDRYTGELVDAVKRFQHWQGLEDDGVIGKRTRDWLNVSP 314 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 +R L +N+ R++ L + ++VNIP SL ++G L S VIVG+ R+TP Sbjct: 315 QMRATLLALNIQRLRLLPDNV--HTGIMVNIPNYSLIYYQDGAERLSSRVIVGQPKRKTP 372 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEV 286 ++ S + ++ NP W +P ++ ++D++ + +DP YL+ + ++ + + + Sbjct: 373 LMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGYLQRHGYTVLSGWSQDAEAIDPSMI 432 Query: 287 DWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 DW + RQ PG N++ K + Y+HDTP LF +R +SGCV Sbjct: 433 DWPMVSAERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTPNHNLFQRDIRALSSGCV 492 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 RV +L LL+D W+ I + TT V + +PV+ Y++AW +D Q Sbjct: 493 RVNKASELASMLLQDA-GWNNSRISSTLDQGNTTFVSMKHRIPVNLYYLTAWVAEDGRPQ 551 Query: 405 FRDDIYGLDN 414 FR DIY D+ Sbjct: 552 FRTDIYNYDD 561 >gi|156974988|ref|YP_001445895.1| hypothetical protein VIBHAR_02710 [Vibrio harveyi ATCC BAA-1116] gi|156526582|gb|ABU71668.1| hypothetical protein VIBHAR_02710 [Vibrio harveyi ATCC BAA-1116] Length = 530 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 101/396 (25%), Positives = 175/396 (44%), Gaps = 32/396 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LSL+ I LD+ + + +++ F+ + + + P+ ++ + Sbjct: 159 TLSLLSNEITVGKLDQFLTDLRSPLQMDESFNTAFSSLSTYAKFEFPLYQQD------QR 212 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 +A D L + S + R++ + G LD +D +E A Sbjct: 213 LARVGD---------------ELFDKSSLIARMQIVGVEVGHLDTET---TLYDENLELA 254 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 V FQ HGL G++ +TL +N R+ L +N R + +++ V VN+P Sbjct: 255 VMEFQRIHGLKQDGIIGPNTLRWINFSPQQRLHSLALNAERSRIWSKER--DNVVFVNVP 312 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + +G+ S V+VG+ R+TPI+ ++ ++ NP W +P I+ KD++ +++ Sbjct: 313 GYEVTYWHDGQPLFESKVVVGKASRKTPIMTGTMDSVILNPTWNVPWKIMVKDIIPKVKR 372 Query: 262 DPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYS 317 +P YL ++NI +I + ++W + P + RQ G NA+ K + Sbjct: 373 NPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQSSGSHNALGLYKFNMPN 432 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 Y+HDTP LFN R +SGCVRV + L L K R + R Sbjct: 433 PQAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKKRQSGRRSN 492 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 493 TSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYD 527 >gi|226330682|ref|ZP_03806200.1| hypothetical protein PROPEN_04602 [Proteus penneri ATCC 35198] gi|225201477|gb|EEG83831.1| hypothetical protein PROPEN_04602 [Proteus penneri ATCC 35198] Length = 575 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 112/420 (26%), Positives = 188/420 (44%), Gaps = 19/420 (4%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFDNFLARVDMGIDSDIPIISK 72 F Y+ ++ + ++++ S++ + + + + S P Sbjct: 154 FLGYISFVEQVNKSGTSLLYRSATQVLSAPSDSSVIELQQNIQNNTLGSFVISYAPSHP- 212 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A ++ + + S WPE+ L SS V LR+ L + Sbjct: 213 -YYALMKEELRK--QLHSSVVWPEMKGTTSLKPNQSSQEVVPLRQILRNLKLIPELAVNE 269 Query: 132 V-----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 +DA + +AVKLFQ HGL+P G++ T +N+ R + +N+ R++ Sbjct: 270 QEIATTVYDASLVAAVKLFQTAHGLEPDGIIGRQTRTWLNITPAQRASIMALNIQRLRLT 329 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +G + VNIP SL N ++ L S VIVGR DR+TPI+ S +N ++ NP W + Sbjct: 330 PA--IGDTGIWVNIPDFSLYFYANNELILDSKVIVGRPDRKTPIMSSALNNVVVNPPWNV 387 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIFR--QD 301 P S+ +KD++ + DP Y + G + ++DW + NF +R Q Sbjct: 388 PTSMTRKDIVPRGKADPSYFSRKGYTIYSGWGNDAYPINPYDIDWQNVSANNFPYRIWQA 447 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K + + Y+HDTP LF+ +R +SGC+RV +L LL D Sbjct: 448 PGPTNSLGRYKFNMPNSDAIYLHDTPNHSLFSKNMRAISSGCIRVNKASELASILLGDA- 506 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W + I+ +K T + +PV+ Y +AW +++ Q+R DIYG D P Sbjct: 507 GWKQDRIDAALKRGSTQYAPIPERIPVYLYYQTAWVAQENAPQYRADIYGYDKSISNAEP 566 >gi|261339259|ref|ZP_05967117.1| hypothetical protein ENTCAN_05495 [Enterobacter cancerogenus ATCC 35316] gi|288319116|gb|EFC58054.1| putative periplasmic protein [Enterobacter cancerogenus ATCC 35316] Length = 607 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 124/448 (27%), Positives = 193/448 (43%), Gaps = 43/448 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ + S + S++N + + I S P + Sbjct: 165 YLQFVAGIPVNGNRWLYSQKPYKLATPALSVINQWQLSLDNGDLPRFIASLAPAHPQ--Y 222 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---- 130 A +++ + WP+L L G S V LRE L SG LD + Sbjct: 223 ATMHQSLLAL--VADSRPWPQLRATATLRPGQWSSDVPALREILSRSGILDGGPNIALPG 280 Query: 131 -------------------------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+D + +AVK FQ GL G++ ST + + Sbjct: 281 DDSQNVVVSPSAPVKEKKAVGLNNKPAAYDRELVAAVKQFQAAQGLGADGVIGQSTRDWL 340 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 NV R L +N+ R++ L ++VNIPA SL ++G L S VIVGR D Sbjct: 341 NVSPAQRAGVLALNIQRLRLLPGTL--STGIMVNIPAYSLVYYQDGNEVLASRVIVGRPD 398 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFV 283 R+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ + + Sbjct: 399 RKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDP 458 Query: 284 EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 VDW++ N FR Q PG N++ K S + Y+HDTP LF R +S Sbjct: 459 YMVDWSTITASNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQKDTRALSS 518 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ D Sbjct: 519 GCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRHNIPVNLYYLTAFVGADG 577 Query: 402 IIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 Q+R DIY D G LP+ + Sbjct: 578 RTQYRTDIYNYDLPARSGAQILPKAEQL 605 >gi|153835596|ref|ZP_01988263.1| cell wall degradation protein [Vibrio harveyi HY01] gi|148867813|gb|EDL67053.1| cell wall degradation protein [Vibrio harveyi HY01] Length = 515 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 101/396 (25%), Positives = 175/396 (44%), Gaps = 32/396 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LSL+ I LD+ + + +++ F+ + + + P+ ++ + Sbjct: 144 TLSLLSNEITVGKLDQFLTDLRSPLQMDESFNTAFSSLSTYAKFEFPLYQQD------QR 197 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 +A D L + S + R++ + G LD +D +E A Sbjct: 198 LARVGD---------------ELFDKSSLIARMQIVGVEVGHLDTET---TLYDENLELA 239 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 V FQ HGL G++ +TL +N R+ L +N R + +++ V VN+P Sbjct: 240 VMEFQRIHGLKQDGIIGPNTLRWINFSPQQRLHSLALNAERSRIWSKER--DNVVFVNVP 297 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + +G+ S V+VG+ R+TPI+ ++ ++ NP W +P I+ KD++ +++ Sbjct: 298 GYEVTYWHDGQPLFESKVVVGKASRKTPIMTGTMDSVILNPTWNVPWKIMVKDIIPKVKR 357 Query: 262 DPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYS 317 +P YL ++NI +I + ++W + P + RQ G NA+ K + Sbjct: 358 NPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQSSGSHNALGLYKFNMPN 417 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 Y+HDTP LFN R +SGCVRV + L L K R + R Sbjct: 418 PQAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKKRQSGRRSN 477 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 478 TSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYD 512 >gi|90022535|ref|YP_528362.1| hypothetical protein Sde_2893 [Saccharophagus degradans 2-40] gi|89952135|gb|ABD82150.1| Peptidoglycan-binding domain 1 [Saccharophagus degradans 2-40] Length = 563 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 122/417 (29%), Positives = 200/417 (47%), Gaps = 16/417 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS------ 71 L+L + + I A +D + + D + + S++PI Sbjct: 150 LVLTDAFLFLAQHILAGKVDPETLTNEWKPAKEVVDARA--LLTKVASNVPIADIVQSLR 207 Query: 72 --KETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSK 128 + A+ K +A+ + W L + P + G + + + ERL GDL S+ Sbjct: 208 PRQPRYARLVKTLAWL-NSTQAPDWEPLALSPAIKKGMADTRLSPIAERLRFWGDLSESE 266 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 ++ + AV FQ RHGL+P G+V +TL A+NV R + VNL R + L + Sbjct: 267 ETFTHYEGELMEAVTRFQRRHGLEPDGVVGKNTLLALNVSPVQRANDVVVNLERWRWL-D 325 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 Q MG +++VNI L ++ ++ ++ VIVGR R+TP+ +I ++FNP W +P+ Sbjct: 326 QNMGDYFIVVNIANFDLRVYKSNELVMQKPVIVGRNYRKTPVFSDKIRFLVFNPTWTVPQ 385 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSP-EPPNFIFRQDPGKIN 306 + +D + +++D YL+ + + V +V+W+ + + Q PG +N Sbjct: 386 KLAVQDKLPEIKKDISYLEKYGFTLYALGENTVVNPADVEWDKLHKRFPYRMVQAPGPLN 445 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ K F + + Y+HDTP LF+ R +SGC+RV + I+L LL+ Sbjct: 446 ALGQVKFMFPNAYDVYLHDTPSRELFSKTERAFSSGCIRVSDPIELASKLLEPN-GMGID 504 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 I EV+ + KTT V L T VPVH Y +AW +QFR+DIY D + LP Sbjct: 505 QINEVLSSAKTTTVNLKTPVPVHIEYWTAWVDSSGKLQFRNDIYERDKPLFSALTLP 561 >gi|146311101|ref|YP_001176175.1| hypothetical protein Ent638_1444 [Enterobacter sp. 638] gi|145317977|gb|ABP60124.1| Peptidoglycan-binding domain 1 protein [Enterobacter sp. 638] Length = 607 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 127/448 (28%), Positives = 196/448 (43%), Gaps = 43/448 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ + S + S++N + + I S P + Sbjct: 165 YLQFIAGIPVNGNRWLYSDKAYKLATPALSVINQWQLALDQGTLPRFIASLAPAHPQ--Y 222 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGD----------- 123 A +++ + WP+L L G S V LRE L+ SG Sbjct: 223 ATMHQSLLKL--VADTRPWPQLRGTATLRPGQWSSDVPALREILLRSGATGAEPKIALPG 280 Query: 124 -------LDPSKGLSVA-----------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + PS +D + +AVK FQM GL G++ ST + + Sbjct: 281 DDPQGVVVSPSAPAPEVKAALPTGKPAAYDRELVAAVKTFQMTQGLGADGVIGPSTRDWL 340 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 NV R L +N+ R++ L ++VNIPA SL +NG L S VIVGR D Sbjct: 341 NVSPAQRAGVLALNIQRLRLLPGTL--STGIMVNIPAYSLVYYQNGSEVLASRVIVGRPD 398 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFV 283 R+TP++ S +N ++ NP W +P ++ +KD++ L DP YL+ + ++ + + Sbjct: 399 RKTPMMSSALNNVVVNPPWNVPPTLARKDILPKLWDDPGYLERHGYTVMRGWNSSQAIDP 458 Query: 284 EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 +VDW + P N FR Q PG+ N++ K S + Y+HDTP LF R +S Sbjct: 459 YQVDWATITPSNLPFRFQQAPGERNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDARALSS 518 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV +L LL D W+ I + +K T V + +PV+ Y++A+ +D Sbjct: 519 GCVRVNKASELANMLLGDA-GWNDTRISDTLKEGNTRYVNIRHNIPVNLYYLTAFVGEDG 577 Query: 402 IIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 Q+R DIY D G LP+ + Sbjct: 578 RTQYRTDIYNYDLTARSGAQILPKAEQL 605 >gi|53804877|ref|YP_113480.1| hypothetical protein MCA1003 [Methylococcus capsulatus str. Bath] gi|53758638|gb|AAU92929.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 554 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 114/426 (26%), Positives = 197/426 (46%), Gaps = 23/426 (5%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSI------VNDRFDNFLARVDMGIDSDIPIISK 72 ++ G +L +H ++ + + + D + G++S +P+ Sbjct: 134 LMRYGSNLARGRVHPRAAGFALDVASKRLDLPALVQHLARDPWPCEAIAGLESKLPL--- 190 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDL--DPSKG 129 + A+ Y+ + L L G+ V LR+RL G L + S Sbjct: 191 --YRNLKAALPRYRGLAENNDVSALALPPKLSPGDRHGEVPALRKRLAALGFLWQESSSK 248 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AV FQ RHGL P G++ TL A+NVP R+RQ+++ L R++ L + Sbjct: 249 EPEVYAGDLVEAVARFQERHGLAPDGVIGKGTLAALNVPPAARLRQIRLGLERLRWLP-E 307 Query: 190 KMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWV 245 + ++LVNIP+ L + + + V+VGR TP+ HS + ++F PYW Sbjct: 308 RFEGPFILVNIPSFRLYGYGQDPERPEVSMNVVVGRSSGGHNTPVFHSDMTYVVFRPYWN 367 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFRQDP 302 +PR+I K+M+ + +DP YL +N+ ++ G + + RQ P Sbjct: 368 LPRAITVKEMLPGILRDPGYLARHNLELVPSFGNGSQVYEPSLESLEMLSAGSLKLRQRP 427 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-P 361 G NA+ K F + +N Y+H TP LF R + GC+RV++ + L ++LK Sbjct: 428 GPKNALGLVKFAFPNNDNIYLHGTPSVNLFQRARRDFSHGCIRVQDPVGLAEFVLKREGE 487 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 TW++ IEE + ++ V L +PV+ Y + + D ++F +DIYGLD V ++ Sbjct: 488 TWTQERIEEAMNGAQSRTVTLKQPLPVYIYYSTVLAEPDGTVRFFEDIYGLDRVLEQLLE 547 Query: 422 LPEDHP 427 +P Sbjct: 548 KGFPYP 553 >gi|325981933|ref|YP_004294335.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] gi|325531452|gb|ADZ26173.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] Length = 543 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 111/409 (27%), Positives = 203/409 (49%), Gaps = 18/409 (4%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IA 76 +L + L A+ D + + A ++ + +S +T Sbjct: 130 VLKLATDLSRGRFSATATDPDWHIPRA-DFDAVAFLQAAIYAGHLEDSLQKLSPQTLNYQ 188 Query: 77 QTEKAIAFYQDILSRGG-WPELPIRP-LHLGNSSVSVQRLRERLIIS----GDLDPS--K 128 ++ +A YQ +L W +P P L G++ S+ +R+R+ + G L+ + Sbjct: 189 LLKRTLAHYQILLKNTPEWIRIPSSPSLRPGDTYPSIPLIRQRIAQAYAADGLLEFNLIP 248 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + +D + +A+K FQ +HGL+ G++ +T+ A+N+P++ +IRQL++N+ R++ L Sbjct: 249 NANQLYDTELVAAIKAFQAQHGLNTDGIIGKNTINALNIPLEWKIRQLRINMERLRWLP- 307 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +G R++LVN L A+EN + L +IVGR R TP + ++ ++ NPYW +P Sbjct: 308 RNLGQRHLLVNTAGFYLTAIENDEPVLNMRIIVGRDYRSTPSFNGTLSHMVLNPYWNVPA 367 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPE-PPNFIFRQDPGK 304 SI +KD++ +QDP Y + + + + +DW+ + + RQDPG Sbjct: 368 SIARKDLLPKQQQDPTYFTTAGFKVYPAQERGAQAIDPGMIDWHELKQRFPYFLRQDPGT 427 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F + + Y+HDTP LF +R +SGC+R+ +L + L + P+ Sbjct: 428 HNALGKIKFMFSNPFSIYLHDTPSKSLFRKDIRTFSSGCIRLEKPFELAAFAL-NQPSLP 486 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +++ KT L +P++ VYI+AW+ + + F DIY D Sbjct: 487 -EKFSADLESDKTITTHLPKPLPIYLVYITAWADEHHKVYFYPDIYDRD 534 >gi|156934583|ref|YP_001438499.1| hypothetical protein ESA_02417 [Cronobacter sakazakii ATCC BAA-894] gi|156532837|gb|ABU77663.1| hypothetical protein ESA_02417 [Cronobacter sakazakii ATCC BAA-894] Length = 664 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 119/418 (28%), Positives = 184/418 (44%), Gaps = 45/418 (10%) Query: 47 IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLG 105 DN V + S P + A ++ + WP++ + L G Sbjct: 254 QWQVALDN--GSVPAFVRSLAPAHPQ--YAAMHASLLQL--VADTRPWPQMTGKEKLRPG 307 Query: 106 NSSVSVQRLRERLIISGDLD-----------------------------PSKGLSVAFDA 136 S + L+E L +G LD K +D Sbjct: 308 QWSSDIPALKEILQRTGMLDGGPDIALPGDNNGVVSPSAAPQTASQTRSTPKPTRAVYDK 367 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + +AVK FQ GL G++ ST + +NV R L +N+ R++ L + + Sbjct: 368 DLVAAVKRFQKWQGLGADGVIGESTRDWLNVTPAQRAALLALNIQRLRLLPGKL--STGI 425 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VNIP SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ Sbjct: 426 MVNIPEYSLVYYQNGNQVLASRVIVGRPDRKTPLMSSALNNVVVNPPWNVPPTLARKDIL 485 Query: 257 ALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIFR--QDPGKINAMAST 311 + DP YL+ + +++ G V VDW + P N FR Q PG N++ Sbjct: 486 PKVWNDPGYLESHGYTVLNGWGSNADVVDPWMVDWATITPSNLPFRFQQAPGAHNSLGRY 545 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K S + Y+HDTP LF R +SGCVRV +L LL+D W+ I + Sbjct: 546 KFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDSRISQT 604 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 +K T V + +PV+ Y++A+ +D Q+R DIY D G LP+ + Sbjct: 605 LKEGNTRYVNIPQTIPVNLYYLTAFIGEDGRPQYRTDIYNYDHTARSGAQILPKVEQL 662 >gi|50121470|ref|YP_050637.1| hypothetical protein ECA2546 [Pectobacterium atrosepticum SCRI1043] gi|49611996|emb|CAG75445.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 580 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 111/432 (25%), Positives = 183/432 (42%), Gaps = 41/432 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +IV + L + S P S+ Sbjct: 139 YLQFVSGVERSGNDWLYSNVPYRLQSPAANIVAQWQQAVKLGTSAAYVLSLAPQHSQ--Y 196 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---- 130 A+ +A+ + WP L L S + LRE L +G L ++ + Sbjct: 197 AKMHEALKTM--LTDNRPWPSLNLTESLRPEQQSQGLTVLREILQRTGMLSSTESITLFN 254 Query: 131 -----------------------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + AVK FQ GL+ G++ T + +NV Sbjct: 255 ENTAATTTSLTGQAPVVDGTTNADDRYTGELVDAVKRFQHWQGLEDDGVIGKRTRDWLNV 314 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 +R L +N+ R++ L ++VNIP SL ++G L S VIVG+ R+ Sbjct: 315 SPQMRATLLALNIQRLRLLPGNV--HTGIMVNIPNYSLIYYQDGAERLSSRVIVGQPKRK 372 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVE 284 TP++ S + ++ NP W +P ++I++D++ + +DP YL + ++ + + Sbjct: 373 TPLMSSSLYNVVVNPPWNVPTTLIRQDIIPKVVRDPGYLARHGYTVLSGWSQDAEVIDPS 432 Query: 285 EVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +DW P + RQ PG N++ K + Y+HDTP LF +R +SG Sbjct: 433 MIDWQVVSPERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTPNHNLFQRDIRALSSG 492 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVRV +L LL+D W+ I + TT V + +PV+ Y++AW +D Sbjct: 493 CVRVNKASELASMLLQDA-GWNNNRISSTLDQGNTTFVSMKHRIPVNLYYLTAWVAEDGR 551 Query: 403 IQFRDDIYGLDN 414 QFR DIY D+ Sbjct: 552 PQFRTDIYNYDD 563 >gi|83311306|ref|YP_421570.1| hypothetical protein amb2207 [Magnetospirillum magneticum AMB-1] gi|82946147|dbj|BAE51011.1| Uncharacterized protein conserved in bacteria [Magnetospirillum magneticum AMB-1] Length = 535 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 123/419 (29%), Positives = 193/419 (46%), Gaps = 12/419 (2%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--I 75 +L G L + + + + + IS + Sbjct: 115 TLLRFGRDLAIGGVLPARNVGGFGAETRGEFDGARFLKALAEGKPLAEQMEAISPQYVGY 174 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + + I + GGWP +P L G + V LR RLI SGDL + Sbjct: 175 IRLRDGLERARAIAAAGGWPTIPDGAKLVPGETDERVPLLRRRLIASGDLADGLAEGKIY 234 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA + AVK FQ RHGLDP V TL +NVP D R+RQ+ NL R + + + G Sbjct: 235 DATLAEAVKRFQARHGLDPDATVGGKTLAHLNVPADARVRQITANLERWRWMP-RSFGRH 293 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V VNI A +E VE+G V + V+VG TP +++ ++ ++ NP W +P SI K+ Sbjct: 294 HVAVNIAAQQMEVVEDGSVAMVMRVVVGDTKHPTPSMNTTMSSVVLNPAWRVPTSIANKE 353 Query: 255 MMALLRQDPQYLKDNNIHMIDE--KGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMAST 311 ++ LR+DP YL + + ++D E + VDWN+ + + RQ PG NA+ Sbjct: 354 ILPKLRKDPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRLRQPPGPDNALGQL 413 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K ++ YMHDTP F+ R + GCVR+ ++L +L W ++ Sbjct: 414 KFNLTDSDDIYMHDTPNRRAFSRSYRALSHGCVRLERPVELGELMLG--ARWQGKLAHDI 471 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII---PLPEDHP 427 R T + L +PV+ +Y +AW+ ++ + FRDD+YG D + + +P P Sbjct: 472 NANRSTRTLMLERTIPVYLMYWTAWADENGNLHFRDDLYGHDRRLMTALERARIPAQRP 530 >gi|24373464|ref|NP_717507.1| hypothetical protein SO_1899 [Shewanella oneidensis MR-1] gi|24347755|gb|AAN54951.1|AE015633_3 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 571 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 211/441 (47%), Gaps = 26/441 (5%) Query: 12 YCFFVYL---ILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRF-----DNFLARVDMG 62 F V L I+ + L+ ++ S+L + N + H + V Sbjct: 128 SIFEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDEAHLDFDTTLKQLEEHIKAHTVAEA 187 Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIIS 121 I+ P I+ Q ++ +A Y+D+ +R + +P + G +S S++ + RL Sbjct: 188 INGLAPKITP--YHQLKQYLAHYKDLAARYPFTTIPYTEVIKPGTTSPSIKGIAARLKEQ 245 Query: 122 GDLDPSKGLSV---------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 G LD + + +D +E+A++ FQ H L G++ + T+ A+NVP R Sbjct: 246 GYLDANATVQDATLVANAPLLYDNILEAAIRQFQADHSLKADGVIGAGTMAALNVPYAQR 305 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + Q+++NL R + L + Y++VN+ L ++ + R+ +I+G++D +TP+ Sbjct: 306 VEQIRINLERARWL-SANLSANYLIVNLAGYELLLFKDNNLSWRTDIIIGKIDSKTPLFK 364 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S++ ++ NP W +P SI +++ R+DP YL + +++ G V +DW+S Sbjct: 365 SKLKYVVVNPTWTVPNSI-STEIINHQRKDPDYLHKKHFKVVESSGTPVDASGIDWHSMT 423 Query: 292 -EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + + F Q+PG N++ K F ++ + Y+HDTP LF+ R + GC+RV++ + Sbjct: 424 RKNFPYWFVQEPGADNSLGLVKFIFPNQYSIYLHDTPSKNLFDKTDRAFSHGCIRVKDPL 483 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L LL WS + + KT + L + + +Y +A K+ I+F +D+Y Sbjct: 484 VLADKLLSANANWSSETLNNKLAEGKTENLFLDEPLDILIMYWTATI-KNGKIKFYNDVY 542 Query: 411 GLDNVHVGIIPLPEDHPIDSD 431 D V + + P + +D Sbjct: 543 TRDPVLIEALNRPTYEGVLAD 563 >gi|312144057|ref|YP_003995503.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium sp. 'sapolanicus'] gi|311904708|gb|ADQ15149.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium sp. 'sapolanicus'] Length = 545 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 117/409 (28%), Positives = 201/409 (49%), Gaps = 13/409 (3%) Query: 19 ILPMGLSLVEKPIHASVL-DEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIA 76 + + + V+ ++ ++ F+ + + + + S +P + Sbjct: 134 YFSLATDYLSGKLDPEVILEDGDFSRNRIDNSEIFEGLKSENITVNLQSKLP--ESDYYQ 191 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAF- 134 + + + Y+D WPE+ L G + V +L + LI G L + Sbjct: 192 RLKHKLYIYRDSGEVEQWPEVDSGSLLAQGAEGIRVSQLSDNLINRGYLSEENIDDKYYF 251 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 + + +AVK FQ HGL G+V TLEA+N+P + RI+Q+ +N+ R + L + +G R Sbjct: 252 GSQLNAAVKEFQFNHGLSDDGIVGPQTLEALNIPYEKRIKQIMINMERWRWLPK-DLGER 310 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y+ VNI SL E+ + + IVG R TP+ I ++FNPYW +P+SI +D Sbjct: 311 YIYVNISDYSLNVYEDNNIIMNMKTIVGNEQRSTPVFSDEIRYLVFNPYWYVPKSIAVED 370 Query: 255 MMALLRQDPQYLKDNNIHMIDEKG----KEVFVEEVDWNSPE--PPNFIFRQDPGKINAM 308 ++ ++ D YL +NN + +++ E++W + + NF+ RQ+PG NA+ Sbjct: 371 ILPSVKNDIDYLDENNYKIFAYNNNNTLRKIDASEIEWENIDEDNFNFLVRQEPGDENAL 430 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F +R N Y+HDTP LF+ R +SGC+R+ I+L ++LLKD W R + Sbjct: 431 GRVKFMFPNRFNVYLHDTPSKYLFDETERGFSSGCIRIEKPIELALYLLKDQEEWDRETL 490 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 EE++K + L +P++ Y +AW + FR DIY D + + Sbjct: 491 EEIMKEDNEKTIYLDETIPIYLQYNTAWVDNFGNLNFRKDIYNRDKILI 539 >gi|163803521|ref|ZP_02197391.1| GTP cyclohydrolase II [Vibrio sp. AND4] gi|159172697|gb|EDP57548.1| GTP cyclohydrolase II [Vibrio sp. AND4] Length = 521 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 103/397 (25%), Positives = 172/397 (43%), Gaps = 34/397 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LSL+ I LD+ + + D F+ A + P ++ K Sbjct: 150 TLSLLSNEITVGKLDQFLAGLRSPLQMEDSFNTAFASLSTYAKFKFPRYQQD------KR 203 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 +A +G++ L R+ I G ++ S +D +E Sbjct: 204 LAR-------------------VGDALFDKASLIARMQIVGVEVGHLDTESRLYDDNLEL 244 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV FQ HGL G++ +TL +N R+ L +N R + +++ V VN+ Sbjct: 245 AVMEFQRIHGLKQDGVIGPNTLRWVNFSPQQRLHSLALNAERSRIWSKKR--DNVVFVNV 302 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VG+ R+TPI+ ++ ++ NP W +P I+ KD++ ++ Sbjct: 303 PGYEVTYWHDGRPLFESKVVVGKASRKTPIMTGTMDSVILNPTWNVPWKIMVKDIIPKVK 362 Query: 261 QDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL ++NI +I + ++W + P + RQ G NA+ K Sbjct: 363 RNPMYLIEHNIQIIRSWSSREVIDPTTINWATVNPKTFPYRMRQSSGSHNALGLYKFNMP 422 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LFN R +SGCVRV + L L K +R + R Sbjct: 423 NPQAIYLHDTPSKNLFNEDRRAFSSGCVRVEHADQLAELLFKTQGLEARLERKRQSGRRS 482 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 483 NTSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYD 518 >gi|224369240|ref|YP_002603404.1| hypothetical protein HRM2_21420 [Desulfobacterium autotrophicum HRM2] gi|223691957|gb|ACN15240.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 549 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 108/379 (28%), Positives = 177/379 (46%), Gaps = 16/379 (4%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQ 112 +D S P + K + Y + G W +L + G+ + Sbjct: 172 LATENLDEFFQSLPPQHHQ--YRGLRKGLLHYGLLKYSGKWKDLSGTESIRPGDEDERIV 229 Query: 113 RLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +R+R+ + ++ S S +D + V LFQ HGL G++ +T++ +N Sbjct: 230 EIRKRIALLENDNKEISKSAEPS-VYDHELLKKVVLFQQTHGLVQDGIIGRNTIQELNKS 288 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + R+ Q+++N+ R + + +G +Y+LVNI SL A + G++ VIVG+ QT Sbjct: 289 PEDRVDQIKINMARWRWQ-DHGLGDKYILVNIANYSLYACKTGELKFSMPVIVGKFQHQT 347 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEE 285 P+ +I + NPYW +P SI + + LR++P YL + NI + G E+ Sbjct: 348 PVFSDKIKYLELNPYWNVPSSIAVNEDLPGLRKNPSYLVEKNIRLFSNWQKDGVEIDSTA 407 Query: 286 VDWNSPEPP---NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 ++W P F RQDPG NA+ K F + + Y+HD+P LF+ R + G Sbjct: 408 INWKRVTPSEMARFKLRQDPGPTNALGRVKFVFPNHYSVYLHDSPAKRLFSEQKRSFSHG 467 Query: 343 CVRVRNIIDLDVWLLKDT-PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 C+RV L V+LL + W+ I +++ K +K+ VPVH Y +AW KD Sbjct: 468 CIRVSEPEKLAVFLLDEEGSEWNIEQIHDLISQGKRKVLKIRLPVPVHITYQTAWVDKDD 527 Query: 402 IIQFRDDIYGLDNVHVGII 420 I F D+YG D + Sbjct: 528 EILFNGDVYGRDEKLYKAL 546 >gi|119383985|ref|YP_915041.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119373752|gb|ABL69345.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 535 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 100/412 (24%), Positives = 172/412 (41%), Gaps = 9/412 (2%) Query: 15 FVYLILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVD-MGIDSDIPIISK 72 F + + ++ I E D F A D + + + +P Sbjct: 115 FARAFADWSRDVSGGILDPRRVEPGIKREVQRPRTGDLLRAFAAAADPVAMLAALPPQDA 174 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +A+A +++ G P + G S +V LR RL G G + Sbjct: 175 R-YEALRQALARQSQLVAPGDAPRVAEGLWREGTSDPAVAALRVRLASVGFAAAPMGSPL 233 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + AV +Q GL G+ T+ +N + V L R++ + + Sbjct: 234 TYDGALAQAVAAYQKAAGLPADGVAGPRTVARLNRGTGPEAEAILVALERMRWMRGHDLN 293 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ--TPILHSRINRIMFNPYWVIPRSI 250 R+V VN+P + ENG+ + V++G+ +R+ TP + ++ NP W +PRSI Sbjct: 294 ARHVWVNLPEFNARIYENGREVFETRVVIGKANREFETPEFSETMKYMVVNPRWNVPRSI 353 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PNFIFRQDPGKINAM 308 K+ + L+ + + ++ ++D G + + +D+ + RQ P NA+ Sbjct: 354 TVKEYLPRLQANRHAV--GHLDVVDGAGNVIARDRIDFRKYSAKTFPYRMRQKPSDDNAL 411 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F + N Y+HDTP LFN R + GC+RV +DL LLK Sbjct: 412 GQVKFMFPNPWNIYLHDTPTKHLFNQSSRAYSHGCIRVGRPVDLAHELLKGQVESPEAVF 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + +K+ + T + L VPVH VY +A+ + I+ DIYG D + + Sbjct: 472 SKALKSGRETYLNLRPPVPVHLVYFTAFPDESGQIRRFPDIYGRDALVHAAL 523 >gi|94312745|ref|YP_585954.1| hypothetical protein Rmet_3815 [Cupriavidus metallidurans CH34] gi|93356597|gb|ABF10685.1| conserved hypothetical protein (peptidoglycan-binding domain) [Cupriavidus metallidurans CH34] Length = 540 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 104/424 (24%), Positives = 180/424 (42%), Gaps = 21/424 (4%) Query: 20 LPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDN--------FLARVDMGIDSDIPII 70 L + + +H +D I+ ++ FD R+ I P Sbjct: 106 LTVAMRQYLSDLHKGRIDPRQIHVNFSVADETPFDPDSYLHAAVAANRLPAAIHEAAPSF 165 Query: 71 SKETIAQTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 A++ Y+ + ++ W P P L +G + ++ +RL GDL Sbjct: 166 P--LYPTLRDALSRYRALATQPLWNTPLPTPPGNKLAIGQPYDGLAQMAQRLEALGDLPQ 223 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + ++ + +AV+ FQ RHGLD G++ TL +N R++Q+ + + R++ Sbjct: 224 GTPVPKKYEGALVTAVESFQKRHGLDADGVIGQGTLAQLNTTPSERVKQIALTMERLRWT 283 Query: 187 LEQKMGLRYVLVNIPAASLEAVE----NGKVGLRSTVIVGRVDR-QTPILHSRINRIMFN 241 G R ++VNIP L A + + L VIVG+ +TP+ + I F+ Sbjct: 284 P-LTAGPRVIVVNIPEFMLRAYDYVDGKLDIKLEMKVIVGKALNTRTPMFREDMRYIEFS 342 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 PYW +P SI + +++ R+DP Y + + + ++ RQ Sbjct: 343 PYWNVPPSIARSEVVPKSRRDPGYFTRQGFEFVSGGQAITTLSSANLDAVLNGQMRIRQR 402 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG +NA+ K F + N Y+H TP P LF R + GC+RV + L ++L+D P Sbjct: 403 PGPLNALGDIKFVFPNNQNIYLHHTPTPQLFQRGRRDFSHGCIRVEEPVQLAKFVLQDMP 462 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W+ I + + K+ + L +PV Y +A + D + F DIYG D + + Sbjct: 463 EWTEERIRQAMSKGKSNTIALKQPLPVVLAYGTAIARADGRVYFLPDIYGQDKLLEQALR 522 Query: 422 LPED 425 Sbjct: 523 QRNP 526 >gi|168243764|ref|ZP_02668696.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449643|ref|YP_002044987.1| hypothetical protein SeHA_C1093 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407947|gb|ACF68166.1| YcbB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337184|gb|EDZ23948.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 606 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 120/435 (27%), Positives = 189/435 (43%), Gaps = 45/435 (10%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ------------------------SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + A+D + AVK FQ GL G++ +T Sbjct: 277 DNTTDSAVVSPSAVVDEQTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADGVIGPATR 336 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +N+ R L +N+ R++ L + ++VNIPA SL +NG L S VIVG Sbjct: 337 NWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQVLASRVIVG 394 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE-- 280 R DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ + Sbjct: 395 RPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEA 454 Query: 281 VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + +VDW + P N FR Q PG N++ K S + Y+HDTP LF R Sbjct: 455 IDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARA 514 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV +L LL+D W+ I +K T V + +PV+ Y++A+ Sbjct: 515 LSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVG 573 Query: 399 KDSIIQFRDDIYGLD 413 D +Q+R DIY D Sbjct: 574 ADGRMQYRTDIYNYD 588 >gi|226946156|ref|YP_002801229.1| petidoglycan binding protein [Azotobacter vinelandii DJ] gi|226721083|gb|ACO80254.1| petidoglycan binding protein [Azotobacter vinelandii DJ] Length = 530 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 110/406 (27%), Positives = 174/406 (42%), Gaps = 16/406 (3%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK---------ETIAQTE 79 + + LD+ E + A + + + E Sbjct: 127 RHLAYGRLDQARVEPLWRAPDSPAPASPALFPAFAVTRLDDLPAAFAEARPDFEPYRALR 186 Query: 80 KAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKG--LSVAFDA 136 A A + R W +P L G + V L +RL G L + Sbjct: 187 HAYAELRRNAPR-AWRLVPDGSLLRPGMTDERVPLLEQRLAAEGYLSERASGRDRQRYTP 245 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + A+K FQ +H LD G+V +TL +NV R+ Q++VNL R + L + M + Sbjct: 246 QLVEAMKRFQAKHFLDDDGVVGPATLTELNVTPAERLAQVRVNLERFRWLARE-MEPTLL 304 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 LV++ A L + + ++ VGR R TP+L S++ + NP W +P +I+++D + Sbjct: 305 LVDVAGAQLTFFHDHQPRWQTRTQVGRPTRPTPLLKSQVTHLTLNPTWTVPPTILREDKL 364 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 +R++ +L N+ +ID +GKE+ VDW+ P + RQDPG N + I F Sbjct: 365 PRIRRNIGFLASQNLRVIDRQGKELNPRNVDWH--NPSGIMLRQDPGPHNPLGRIAIRFP 422 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LF R +SGCVRV + L LL+ R EE++ + K Sbjct: 423 NPFAVYLHDTPSQHLFAKETRTLSSGCVRVERAMQLTDLLLEGASPAERQRFEEILASGK 482 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 T + L VP+ Y + + FR DIY D V + Sbjct: 483 TRNLNLPRPVPILLAYWTVQVDDGGQLVFRPDIYAHDGKLVAALNA 528 >gi|121606474|ref|YP_983803.1| peptidoglycan-binding domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120595443|gb|ABM38882.1| Peptidoglycan-binding domain 1 protein [Polaromonas naphthalenivorans CJ2] Length = 525 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 119/428 (27%), Positives = 193/428 (45%), Gaps = 26/428 (6%) Query: 20 LPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLA--------RVDMGIDSDIPII 70 L + +H +D + I+ ++ + FD R+ P + Sbjct: 92 LSTAMERYLSDVHRGRIDPQKIHHNFSPPQREAFDAAAYLQAALAARRLTDAASEAAPRL 151 Query: 71 SKETIAQTEKAIAFYQDILSRGGW----PELP---IRPLHLGNSSVSVQRLRERLIISGD 123 AQ +A+A Y++ ++ W P LP L G S + L ERL GD Sbjct: 152 P--IYAQLREALARYRERVNHPAWRQPLPRLPGGKAGKLAPGQSYAGLALLAERLTALGD 209 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + P L ++ + A K FQ RHGL G++ +TL + V R+RQ+++ L R+ Sbjct: 210 MAPGLPLPARYEGPLVDAAKAFQQRHGLAADGVIGKTTLAQLQVMPAARVRQIELALERL 269 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVE--NGK--VGLRSTVIVGRV-DRQTPILHSRINRI 238 + + G R ++VNIP L A E +G+ V ++VG+ D +TP+ + I Sbjct: 270 RWTPLLQ-GPRMIVVNIPEFVLRAYEVQDGQIHVQQEMKIVVGKALDTRTPLFDEDMRFI 328 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW-NSPEPPNFI 297 F+PYW +P SI + +++ LR+DP YL N+ + G+ + Sbjct: 329 EFSPYWNVPPSIARAEIVPRLRRDPGYLARENMEFVSAGGRVDKTVSAGLLEAVLAGQSR 388 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ PG NA+ K F + +N Y+H TP LF R + GC+RV + + L ++L Sbjct: 389 IRQRPGPKNALGDIKFVFPNSDNIYLHHTPATQLFERARRDFSHGCIRVEHPVALAKFVL 448 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 K+ P W+ I+ + ++ ++LA VPV Y + KD F DDIYGLD + Sbjct: 449 KNMPEWTPERIQNAMSRGESATLRLAEPVPVLIAYGTTLV-KDGRTFFFDDIYGLDRLLD 507 Query: 418 GIIPLPED 425 + Sbjct: 508 AALRKHSG 515 >gi|16128892|ref|NP_415445.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|89107775|ref|AP_001555.1| predicted carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|170080583|ref|YP_001729903.1| carboxypeptidase [Escherichia coli str. K-12 substr. DH10B] gi|238900183|ref|YP_002925979.1| putative carboxypeptidase [Escherichia coli BW2952] gi|2506630|sp|P22525|YCBB_ECOLI RecName: Full=Probable L,D-transpeptidase YcbB gi|1787155|gb|AAC74011.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|4062492|dbj|BAA35671.1| predicted carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|169888418|gb|ACB02125.1| predicted carboxypeptidase [Escherichia coli str. K-12 substr. DH10B] gi|238862186|gb|ACR64184.1| predicted carboxypeptidase [Escherichia coli BW2952] gi|260449929|gb|ACX40351.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|315135573|dbj|BAJ42732.1| hypothetical protein ECDH1ME8569_0876 [Escherichia coli DH1] Length = 615 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LCDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|157160446|ref|YP_001457764.1| hypothetical protein EcHS_A1032 [Escherichia coli HS] gi|170020673|ref|YP_001725627.1| hypothetical protein EcolC_2671 [Escherichia coli ATCC 8739] gi|188494298|ref|ZP_03001568.1| putative peptidoglycan binding domain [Escherichia coli 53638] gi|194438718|ref|ZP_03070805.1| putative peptidoglycan binding domain protein [Escherichia coli 101-1] gi|253774046|ref|YP_003036877.1| hypothetical protein ECBD_2670 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161039|ref|YP_003044147.1| hypothetical protein ECB_00929 [Escherichia coli B str. REL606] gi|256023374|ref|ZP_05437239.1| hypothetical protein E4_08369 [Escherichia sp. 4_1_40B] gi|297521034|ref|ZP_06939420.1| hypothetical protein EcolOP_25597 [Escherichia coli OP50] gi|300929620|ref|ZP_07145082.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300949712|ref|ZP_07163691.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300955427|ref|ZP_07167801.1| hypothetical protein HMPREF9547_01312 [Escherichia coli MS 175-1] gi|301022419|ref|ZP_07186302.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|301643445|ref|ZP_07243493.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|307137554|ref|ZP_07496910.1| hypothetical protein EcolH7_05406 [Escherichia coli H736] gi|331641451|ref|ZP_08342586.1| putative amidase [Escherichia coli H736] gi|157066126|gb|ABV05381.1| putative peptidoglycan binding domain [Escherichia coli HS] gi|169755601|gb|ACA78300.1| Peptidoglycan-binding domain 1 protein [Escherichia coli ATCC 8739] gi|188489497|gb|EDU64600.1| putative peptidoglycan binding domain [Escherichia coli 53638] gi|194422350|gb|EDX38350.1| putative peptidoglycan binding domain protein [Escherichia coli 101-1] gi|242376740|emb|CAQ31453.1| L,D-transpeptidase YcbB [Escherichia coli BL21(DE3)] gi|253325090|gb|ACT29692.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972940|gb|ACT38611.1| predicted carboxypeptidase [Escherichia coli B str. REL606] gi|253977154|gb|ACT42824.1| predicted carboxypeptidase [Escherichia coli BL21(DE3)] gi|299881260|gb|EFI89471.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|300317650|gb|EFJ67434.1| hypothetical protein HMPREF9547_01312 [Escherichia coli MS 175-1] gi|300450893|gb|EFK14513.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300462457|gb|EFK25950.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|301078159|gb|EFK92965.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|315619119|gb|EFU99699.1| putative peptidoglycan binding domain protein [Escherichia coli 3431] gi|323938031|gb|EGB34293.1| ykud domain-containing protein [Escherichia coli E1520] gi|323942841|gb|EGB39006.1| ykud domain-containing protein [Escherichia coli E482] gi|323962917|gb|EGB58491.1| ykud domain-containing protein [Escherichia coli H489] gi|331038249|gb|EGI10469.1| putative amidase [Escherichia coli H736] gi|332342367|gb|AEE55701.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 615 Score = 362 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LCDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|261821332|ref|YP_003259438.1| hypothetical protein Pecwa_2052 [Pectobacterium wasabiae WPP163] gi|261605345|gb|ACX87831.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] Length = 575 Score = 362 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 105/434 (24%), Positives = 179/434 (41%), Gaps = 45/434 (10%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYH---SIVNDRFDNFLARVDMGIDSDIPIISKE 73 YL G+ S + + S ++ + S P S+ Sbjct: 134 YLQFVSGVERNGNNWLYSSVPYRLQSPAVNIVSQWQQAVNS--GTSAAYVASLTPSHSQ- 190 Query: 74 TIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPS----- 127 A+ +A+ + WP L L S + LRE L +G L + Sbjct: 191 -YAKMHEALKTM--LTDNRPWPSLNLAESLRPEQQSRELVALREILQRTGMLSLTESITL 247 Query: 128 ----------------------KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + AVK FQ GL+ G++ T + + Sbjct: 248 FNENVSATTTPLTEQTPVDNGVANADDRYSGDLVEAVKRFQHWQGLEGDGVIGKRTRDWL 307 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 NV +R L +N+ R++ + + ++VNIP SL ++G L S VIVG+ Sbjct: 308 NVSPQMRATLLALNIQRLRLVPDNV--HTGIMVNIPNYSLIYYQDGAERLSSRVIVGQPK 365 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVF 282 R+TP++ S + ++ NP W +P ++ ++D++ + +DP YL+ + ++ + + Sbjct: 366 RKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGYLQRHGYTVLSGWSQDAEAID 425 Query: 283 VEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 ++W + RQ PG N++ K + Y+HDTP LF +R + Sbjct: 426 PSMIEWQGVSAERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTPNHNLFQRDIRALS 485 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 SGCVRV +L LL+D W+ I + TT V + +PV+ Y++AW +D Sbjct: 486 SGCVRVNKASELASMLLQDA-GWNNSRISSTLDQGNTTFVSMKHRIPVNLYYLTAWVAED 544 Query: 401 SIIQFRDDIYGLDN 414 QFR DIY D+ Sbjct: 545 GRPQFRTDIYNYDD 558 >gi|56413956|ref|YP_151031.1| hypothetical protein SPA1803 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362879|ref|YP_002142516.1| hypothetical protein SSPA1676 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128213|gb|AAV77719.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094356|emb|CAR59868.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 615 Score = 362 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 S + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAAIVETSVAQPVDEPTARRSKSAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 TLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|91210027|ref|YP_540013.1| hypothetical protein UTI89_C0997 [Escherichia coli UTI89] gi|117623143|ref|YP_852056.1| hypothetical protein APECO1_37 [Escherichia coli APEC O1] gi|218557830|ref|YP_002390743.1| hypothetical protein ECS88_0953 [Escherichia coli S88] gi|237707087|ref|ZP_04537568.1| YcbB [Escherichia sp. 3_2_53FAA] gi|91071601|gb|ABE06482.1| hypothetical protein YcbB [Escherichia coli UTI89] gi|115512267|gb|ABJ00342.1| YcbB [Escherichia coli APEC O1] gi|218364599|emb|CAR02285.1| putative exported enzyme [Escherichia coli S88] gi|226898297|gb|EEH84556.1| YcbB [Escherichia sp. 3_2_53FAA] gi|294493685|gb|ADE92441.1| putative peptidoglycan binding domain protein [Escherichia coli IHE3034] gi|307627648|gb|ADN71952.1| hypothetical protein UM146_12925 [Escherichia coli UM146] gi|315287548|gb|EFU46954.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|323953367|gb|EGB49233.1| ykud domain-containing protein [Escherichia coli H252] gi|323958230|gb|EGB53939.1| ykud domain-containing protein [Escherichia coli H263] Length = 615 Score = 362 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDQGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKLMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|168822072|ref|ZP_02834072.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341461|gb|EDZ28225.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085238|emb|CBY95023.1| Uncharacterized protein ycbB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 615 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 S + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAAVVETSVAQPVDEPTARRSKSAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 NLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|262393898|ref|YP_003285752.1| L,D-transpeptidase YcbB [Vibrio sp. Ex25] gi|262337492|gb|ACY51287.1| L,D-transpeptidase YcbB [Vibrio sp. Ex25] Length = 513 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 172/397 (43%), Gaps = 35/397 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIV-NDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LS++ I L + + + ++ F + + + PI + +A Sbjct: 143 TLSVLSNEITVGKLSQFLASLRSPLQTDEAFYSAYSSLSEHAKYQYPIYEQTGLA----- 197 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 +G+ + L ER+ + G D+ + +D +E Sbjct: 198 ---------------------RVGDQLENKPLLIERMEVVGVDVSYLDITTQQYDEELEL 236 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL G++ +T+ +N R+ L +N R + + + V VN+ Sbjct: 237 AVKEFQRIHGLKEDGVIGPNTIRWINFSPQERLHLLALNSERSRIWSKDR--DNVVFVNV 294 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P +I+ KD++ ++ Sbjct: 295 PGYEVTYWHDGQPLFESKVVVGRASRKTPIMSGTLDSVILNPTWNVPWTIMVKDIIPKVK 354 Query: 261 QDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL ++NI +I + + ++W + P + RQ G NA+ K Sbjct: 355 RNPMYLINHNIQIIRSWTSNEIIDPTTINWATVNPRTFPYRMRQASGLHNALGLYKFNMP 414 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LF R +SGCVRV + L L K R + R Sbjct: 415 NPQAIYLHDTPSKNLFERDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKKRESTRRS 474 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 475 NTSVPLGERIQVHIIYQTAWL-EEGTLYYRDDIYKYD 510 >gi|309795089|ref|ZP_07689509.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|308121393|gb|EFO58655.1| conserved hypothetical protein [Escherichia coli MS 145-7] Length = 615 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|281178056|dbj|BAI54386.1| putative amidase [Escherichia coli SE15] Length = 615 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKLMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|331662339|ref|ZP_08363262.1| putative amidase [Escherichia coli TA143] gi|331060761|gb|EGI32725.1| putative amidase [Escherichia coli TA143] Length = 615 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|227356807|ref|ZP_03841192.1| peptidoglycan binding domain protein [Proteus mirabilis ATCC 29906] gi|227163097|gb|EEI48032.1| peptidoglycan binding domain protein [Proteus mirabilis ATCC 29906] Length = 571 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 104/418 (24%), Positives = 174/418 (41%), Gaps = 19/418 (4%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISK 72 F Y+ ++ + + + V + + + + S P Sbjct: 150 FLGYISFVEQINQSGTTLLYRAAIQALPAPTVQAVEHFQLNLQQNTLGRFVVSFAPSHP- 208 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 ++ + + WP + + L S+ V LR+ L L Sbjct: 209 -YYPLMKEEVRK--QLHQEVIWPVMEGKNSLKPNQSAEEVIALRQILRNLNLLPQLAENE 265 Query: 132 V-----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 +D + +AVK FQ HGL+ G++ T +N+ R + +N+ R++ Sbjct: 266 QEVATTIYDEPLIAAVKSFQAAHGLETDGIIGRQTRNWLNMTPIQRAGIMALNIQRLRLT 325 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +G + VNIP SL N ++ L S VIVGR DR+TPI+ S +N ++ NP W + Sbjct: 326 PP--IGDTGIWVNIPDYSLYFYANNQLILDSKVIVGRPDRKTPIMSSALNNVVVNPPWNV 383 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIFR--QD 301 P S+ +KD++ + DP Y + G + ++DW + NF +R Q Sbjct: 384 PTSMTRKDIVPKGKADPSYFSRKGYTIYSGWGNDAYPINPYDIDWENISAANFPYRIWQA 443 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K + Y+HDTP LF +R +SGC+RV L LL D Sbjct: 444 PGPTNSLGRYKFNMPNSEAIYLHDTPNHNLFTKNMRAISSGCIRVNKAAQLATILLGDA- 502 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 W + I+ +K T + +PV+ Y +AW +++ Q+R DIY D Sbjct: 503 GWKQDRIDAALKRGSTQYAPIPERIPVYLYYQTAWVAEENAPQYRADIYNYDQSINNA 560 >gi|331672461|ref|ZP_08373251.1| putative amidase [Escherichia coli TA280] gi|284920776|emb|CBG33839.1| putative exported protein [Escherichia coli 042] gi|331070367|gb|EGI41732.1| putative amidase [Escherichia coli TA280] Length = 615 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|168233416|ref|ZP_02658474.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468577|ref|ZP_03074561.1| YcbB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454941|gb|EDX43780.1| YcbB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332469|gb|EDZ19233.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 615 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 189/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 + A+D + AVK FQ GL Sbjct: 277 DNTSDSAVVSPSAVVDETSVAQPVDEQTARSSKPAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 NLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|188584494|ref|YP_001927939.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179347992|gb|ACB83404.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 602 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 135/355 (38%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 +P + +T T +A YQ GGW LP G+S ++ LR L ++GDL Sbjct: 128 LPTYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHPAIPSLRHHLTLTGDLP 187 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S +D + +AVK FQ RHGL +G++ TL A+NVP D R RQL+ + R+ Sbjct: 188 ADAPPSDRYDPPLVAAVKAFQARHGLPDAGILGRLTLNALNVPADTRQRQLRASAQRLMG 247 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP W Sbjct: 248 -SNFGFGERYVTVNIPSATVEAVENGTVTRRYVAVVGSPDKQTPAVETRITDVNLNPTWT 306 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD G Sbjct: 307 VPVSVIRNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPTTIDWNTQKAVNYTLRQDSGLD 366 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--- 362 N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 367 NSLGQIRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEGPNG 426 Query: 363 ----WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 427 AGSTWGPIEIETAIAAGERRDVKLVKPTPVAFVYLTGYATSDGRVHFRDDIYGLD 481 >gi|157157051|ref|YP_001462144.1| hypothetical protein EcE24377A_1024 [Escherichia coli E24377A] gi|256020947|ref|ZP_05434812.1| hypothetical protein ShiD9_18662 [Shigella sp. D9] gi|301326639|ref|ZP_07219969.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|332282170|ref|ZP_08394583.1| conserved hypothetical protein [Shigella sp. D9] gi|157079081|gb|ABV18789.1| putative peptidoglycan binding domain [Escherichia coli E24377A] gi|300846684|gb|EFK74444.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|332104522|gb|EGJ07868.1| conserved hypothetical protein [Shigella sp. D9] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQMTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|323185369|gb|EFZ70733.1| putative peptidoglycan binding domain protein [Escherichia coli 1357] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + ++D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRASYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|290473860|ref|YP_003466734.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus bovienii SS-2004] gi|289173167|emb|CBJ79940.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus bovienii SS-2004] Length = 572 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 111/405 (27%), Positives = 176/405 (43%), Gaps = 14/405 (3%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 YL + S IN +++ D + S I +S Sbjct: 154 YLHFVNDVKKKGDSWLYSKKSYKINLPPPDLIDKW---QQHITDNNVFSYITALSPNNPM 210 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV--A 133 + + + W + L G +S SV LRE LI S LD Sbjct: 211 YKNMRKEMLKQLADKQQWSDFSMKGTLRPGQNSESVVALREILIRSDTLDSLTVKPENKV 270 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 ++ + +AVK FQ HGL G++ ST +N R R + +N+ R++ + + Sbjct: 271 YNKELVAAVKRFQALHGLSADGVIGQSTKVWLNTTPQTRARIMALNIQRLRIIPDNIP-- 328 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +LVNIP SL +GK L S V+VGR R+TPI+ S +N ++ NP W +P S+ +K Sbjct: 329 TGILVNIPNYSLFYYLDGKEVLNSKVVVGRPSRKTPIMSSNLNNVVINPPWTVPTSMTRK 388 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWN--SPEPPNFIFRQDPGKINAM 308 D+ +DP Y + + K + ++W+ +P + RQ PG N++ Sbjct: 389 DIAPRAMRDPSYFRSRGYTVFSSWSNDAKVIDPSSINWDVTTPNNFPYRIRQAPGPTNSL 448 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K + Y+HDTP F +R +SGCVRV +L LL + W++ + Sbjct: 449 GRFKFNMPNSEAIYLHDTPNQASFGREMRAVSSGCVRVNKAPELANMLLGNA-GWNKDRV 507 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +KT T V + ++PV Y +AW + + Q+R DIY D Sbjct: 508 SNSLKTWTTAYVNIPKKIPVFLYYQTAWVDEGGVPQYRADIYDYD 552 >gi|82544667|ref|YP_408614.1| hypothetical protein SBO_2216 [Shigella boydii Sb227] gi|191166981|ref|ZP_03028804.1| putative peptidoglycan binding domain [Escherichia coli B7A] gi|193064628|ref|ZP_03045707.1| putative peptidoglycan binding domain [Escherichia coli E22] gi|193070734|ref|ZP_03051669.1| putative peptidoglycan binding domain [Escherichia coli E110019] gi|194428336|ref|ZP_03060877.1| putative peptidoglycan binding domain protein [Escherichia coli B171] gi|209918175|ref|YP_002292259.1| hypothetical protein ECSE_0984 [Escherichia coli SE11] gi|218553512|ref|YP_002386425.1| hypothetical protein ECIAI1_0966 [Escherichia coli IAI1] gi|218694399|ref|YP_002402066.1| hypothetical protein EC55989_0971 [Escherichia coli 55989] gi|260843174|ref|YP_003220952.1| putative carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|260854216|ref|YP_003228107.1| putative carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|293433222|ref|ZP_06661650.1| hypothetical protein ECCG_01347 [Escherichia coli B088] gi|300816970|ref|ZP_07097189.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300823665|ref|ZP_07103792.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300902916|ref|ZP_07120861.1| hypothetical protein HMPREF9536_01061 [Escherichia coli MS 84-1] gi|300921037|ref|ZP_07137424.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|301302465|ref|ZP_07208596.1| hypothetical protein HMPREF9347_01042 [Escherichia coli MS 124-1] gi|307311688|ref|ZP_07591328.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|331667303|ref|ZP_08368168.1| putative amidase [Escherichia coli TA271] gi|331676713|ref|ZP_08377409.1| putative amidase [Escherichia coli H591] gi|81246078|gb|ABB66786.1| putative amidase [Shigella boydii Sb227] gi|190902975|gb|EDV62701.1| putative peptidoglycan binding domain [Escherichia coli B7A] gi|192927685|gb|EDV82300.1| putative peptidoglycan binding domain [Escherichia coli E22] gi|192955927|gb|EDV86395.1| putative peptidoglycan binding domain [Escherichia coli E110019] gi|194413551|gb|EDX29832.1| putative peptidoglycan binding domain protein [Escherichia coli B171] gi|209911434|dbj|BAG76508.1| putative amidase [Escherichia coli SE11] gi|218351131|emb|CAU96835.1| putative exported enzyme [Escherichia coli 55989] gi|218360280|emb|CAQ97830.1| putative exported enzyme [Escherichia coli IAI1] gi|257752865|dbj|BAI24367.1| predicted carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|257758321|dbj|BAI29818.1| predicted carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|291324041|gb|EFE63463.1| hypothetical protein ECCG_01347 [Escherichia coli B088] gi|300405058|gb|EFJ88596.1| hypothetical protein HMPREF9536_01061 [Escherichia coli MS 84-1] gi|300412028|gb|EFJ95338.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300523865|gb|EFK44934.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300530322|gb|EFK51384.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300842304|gb|EFK70064.1| hypothetical protein HMPREF9347_01042 [Escherichia coli MS 124-1] gi|306908243|gb|EFN38742.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|315060210|gb|ADT74537.1| murein L,D-transpeptidase [Escherichia coli W] gi|315257966|gb|EFU37934.1| putative amidase [Escherichia coli MS 85-1] gi|320183824|gb|EFW58657.1| L,D-transpeptidase YcbB [Shigella flexneri CDC 796-83] gi|323157188|gb|EFZ43311.1| putative peptidoglycan binding domain protein [Escherichia coli EPECa14] gi|323159552|gb|EFZ45532.1| putative peptidoglycan binding domain protein [Escherichia coli E128010] gi|323379230|gb|ADX51498.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] gi|323947286|gb|EGB43294.1| ykud domain-containing protein [Escherichia coli H120] gi|324117210|gb|EGC11118.1| ykud domain-containing protein [Escherichia coli E1167] gi|331065659|gb|EGI37552.1| putative amidase [Escherichia coli TA271] gi|331075402|gb|EGI46700.1| putative amidase [Escherichia coli H591] gi|332093526|gb|EGI98584.1| putative peptidoglycan binding domain protein [Shigella boydii 3594-74] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|238893981|ref|YP_002918715.1| hypothetical protein KP1_1925 [Klebsiella pneumoniae NTUH-K2044] gi|238546297|dbj|BAH62648.1| putative amidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 596 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 115/422 (27%), Positives = 184/422 (43%), Gaps = 32/422 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + S++N + + I P + Sbjct: 164 YLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQ--Y 221 Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSK------ 128 +++ + WP++ L G S + LRE L +G L+ S Sbjct: 222 EAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDIGALREILQRTGMLENSANIVLPG 279 Query: 129 -------------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 +D + VK FQ GL G++ ST + +NV R Sbjct: 280 DVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGV 339 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L +N+ R++ L + ++VNIPA SL ++G L S VIVGR DR+TP++ S + Sbjct: 340 LALNIQRLRLLPGKL--STGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSAL 397 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEP 293 N ++ NP W +P ++ +KD++ +R +P YL+ + ++ + VDW++ Sbjct: 398 NNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITE 457 Query: 294 PNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 N FR Q PG N++ K S + Y+HDTP LF VR +SGCVRV + Sbjct: 458 NNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASE 517 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL+D W+ I + +K T V + +PV+ Y++A+ D Q+R DIY Sbjct: 518 LANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYN 576 Query: 412 LD 413 D Sbjct: 577 YD 578 >gi|323973200|gb|EGB68392.1| ykud domain-containing protein [Escherichia coli TA007] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQMTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|320202321|gb|EFW76892.1| L,D-transpeptidase YcbB [Escherichia coli EC4100B] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|74311483|ref|YP_309902.1| hypothetical protein SSON_0928 [Shigella sonnei Ss046] gi|73854960|gb|AAZ87667.1| putative amidase [Shigella sonnei Ss046] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|222032656|emb|CAP75395.1| Uncharacterized protein ycbB [Escherichia coli LF82] gi|312945445|gb|ADR26272.1| hypothetical protein NRG857_04220 [Escherichia coli O83:H1 str. NRG 857C] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPVVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|16764355|ref|NP_459970.1| hypothetical protein STM0995 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994946|ref|ZP_02576036.1| YcbB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16419508|gb|AAL19929.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327278|gb|EDZ14042.1| YcbB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267992734|gb|ACY87619.1| hypothetical protein STM14_1125 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157538|emb|CBW17028.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911981|dbj|BAJ35955.1| hypothetical protein STMDT12_C10120 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223319|gb|EFX48388.1| L,D-transpeptidase YcbB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129260|gb|ADX16690.1| putative L,D-transpeptidase YcbB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987886|gb|AEF06869.1| hypothetical protein STMUK_0961 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 613 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/442 (27%), Positives = 189/442 (42%), Gaps = 52/442 (11%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 -------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + A+D + AVK FQ GL G Sbjct: 277 DNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADG 336 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG L Sbjct: 337 VIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQVL 394 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ Sbjct: 395 ASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMR 454 Query: 276 EKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + + +VDW + P N FR Q PG N++ K S + Y+HDTP L Sbjct: 455 GWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTL 514 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 FQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVNLY 573 Query: 392 YISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 YLTAFVGADGRMQYRTDIYNYD 595 >gi|16759864|ref|NP_455481.1| hypothetical protein STY0997 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142363|ref|NP_805705.1| hypothetical protein t1939 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213424610|ref|ZP_03357393.1| hypothetical protein SentesTyphi_02366 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650528|ref|ZP_03380581.1| hypothetical protein SentesTy_26793 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25367958|pir||AI0615 probable exported protein STY0997 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502157|emb|CAD05395.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137993|gb|AAO69554.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 189/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 + A+D + AVK FQ GL Sbjct: 277 DNTSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 NLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|152969509|ref|YP_001334618.1| hypothetical protein KPN_00952 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954358|gb|ABR76388.1| putative amidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 577 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 115/422 (27%), Positives = 183/422 (43%), Gaps = 32/422 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + S++N + + I P + Sbjct: 145 YLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQ--Y 202 Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSK------ 128 +++ + WP++ L G S + LRE L +G L S Sbjct: 203 EAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDIGALREILQRTGMLKNSANIVLPG 260 Query: 129 -------------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 +D + VK FQ GL G++ ST + +NV R Sbjct: 261 DVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGV 320 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L +N+ R++ L + ++VNIPA SL ++G L S VIVGR DR+TP++ S + Sbjct: 321 LALNIQRLRLLPGKL--STGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSAL 378 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEP 293 N ++ NP W +P ++ +KD++ +R +P YL+ + ++ + VDW++ Sbjct: 379 NNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITE 438 Query: 294 PNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 N FR Q PG N++ K S + Y+HDTP LF VR +SGCVRV + Sbjct: 439 NNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASE 498 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL+D W+ I + +K T V + +PV+ Y++A+ D Q+R DIY Sbjct: 499 LANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYN 557 Query: 412 LD 413 D Sbjct: 558 YD 559 >gi|324019066|gb|EGB88285.1| hypothetical protein HMPREF9542_02261 [Escherichia coli MS 117-3] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--SSGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|260867097|ref|YP_003233499.1| putative carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|257763453|dbj|BAI34948.1| predicted carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|323175452|gb|EFZ61047.1| putative peptidoglycan binding domain protein [Escherichia coli 1180] Length = 615 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYKNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|220924541|ref|YP_002499843.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219949148|gb|ACL59540.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 540 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 136/364 (37%), Positives = 202/364 (55%), Gaps = 9/364 (2%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRER 117 + P ++ T T + YQ I+ GGWP +P L G+ + +V LR R Sbjct: 114 LAKISQDPTPTLAPSTFLDTLRMADRYQAIVQAGGWPGVPANLSLKPGDRNPAVALLRRR 173 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L ++ DL S D + +A+K FQ RHGL +G++ T++A+NVP R RQL Sbjct: 174 LAVTEDLAADAPASDVMDEALVAALKRFQQRHGLPDTGLLGPMTVKALNVPASTRQRQLA 233 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 + R+ G RYV+ NIP+A++EAVE G V R +VG+ DR +P++ +RI Sbjct: 234 ASASRLMG-SRFPFGERYVVANIPSATVEAVERGTVARRYVAVVGKPDRASPLVETRITN 292 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 + FNP W +P S+I+KD++ +R+DP YL +I M+D +G EV +DW++ + N+ Sbjct: 293 VNFNPTWTVPVSLIKKDIIPHMRKDPGYLAKMHIRMLDGQGNEVQPTAIDWSTEKAVNYT 352 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQDPG N++ +I+ +R+ YMHDTP LF+ RF +SGCVRV + L WLL Sbjct: 353 LRQDPGFDNSLGQVRIDMPNRHAVYMHDTPSKNLFSRTARFHSSGCVRVAEVKGLVGWLL 412 Query: 358 KDTPTWSRY-------HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 + TP IE + T + +KLA VPV FVY++ ++ D FRDD+Y Sbjct: 413 EGTPGPGGPGTVWGPMEIETGIATGERRDIKLAKPVPVTFVYLTGYATPDGRAHFRDDVY 472 Query: 411 GLDN 414 LD Sbjct: 473 SLDG 476 >gi|204929796|ref|ZP_03220817.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320790|gb|EDZ05991.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616425|gb|EFY13334.1| hypothetical protein SEEM315_12488 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619675|gb|EFY16550.1| hypothetical protein SEEM971_17482 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622629|gb|EFY19474.1| hypothetical protein SEEM973_13475 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629778|gb|EFY26553.1| hypothetical protein SEEM974_05176 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632500|gb|EFY29246.1| hypothetical protein SEEM201_14855 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637005|gb|EFY33708.1| hypothetical protein SEEM202_02080 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641456|gb|EFY38094.1| hypothetical protein SEEM954_01508 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646078|gb|EFY42594.1| hypothetical protein SEEM054_01025 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649619|gb|EFY46050.1| hypothetical protein SEEM675_16024 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654079|gb|EFY50402.1| hypothetical protein SEEM965_12727 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658611|gb|EFY54873.1| hypothetical protein SEEM19N_16592 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663468|gb|EFY59670.1| hypothetical protein SEEM801_11882 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670204|gb|EFY66344.1| hypothetical protein SEEM507_18659 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671440|gb|EFY67562.1| hypothetical protein SEEM877_09668 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676796|gb|EFY72863.1| hypothetical protein SEEM867_07816 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682720|gb|EFY78739.1| hypothetical protein SEEM180_06862 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686400|gb|EFY82382.1| hypothetical protein SEEM600_05845 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195923|gb|EFZ81090.1| hypothetical protein SEEM581_13131 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199789|gb|EFZ84878.1| hypothetical protein SEEM501_09363 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202782|gb|EFZ87818.1| hypothetical protein SEEM460_08299 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209053|gb|EFZ93990.1| hypothetical protein SEEM020_20065 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209978|gb|EFZ94885.1| hypothetical protein SEEM6152_04835 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217987|gb|EGA02702.1| hypothetical protein SEEM0077_06119 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219019|gb|EGA03526.1| hypothetical protein SEEM0047_21870 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226592|gb|EGA10797.1| hypothetical protein SEEM0055_10100 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229788|gb|EGA13911.1| hypothetical protein SEEM0052_13157 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233013|gb|EGA17109.1| hypothetical protein SEEM3312_03109 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240748|gb|EGA24790.1| hypothetical protein SEEM5258_12719 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243064|gb|EGA27085.1| hypothetical protein SEEM1156_20569 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249773|gb|EGA33675.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252754|gb|EGA36592.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259168|gb|EGA42812.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259991|gb|EGA43619.1| hypothetical protein SEEM8284_18068 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268008|gb|EGA51487.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269856|gb|EGA53305.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 615 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDDGPKMALPG 276 Query: 126 --------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLDP 153 S + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAAVVETSVAQPVDEQTARRSKSAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 TLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|167553003|ref|ZP_02346753.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442554|ref|YP_002040193.1| hypothetical protein SNSL254_A1028 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401217|gb|ACF61439.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205322472|gb|EDZ10311.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 615 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 S + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAAVVETSVAQPVDEPTARRSKSAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 TLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|200389383|ref|ZP_03215994.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199601828|gb|EDZ00374.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 615 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 S + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAVVDETSVAQPVDEPTARRSKSAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 TLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|218704353|ref|YP_002411872.1| hypothetical protein ECUMN_1119 [Escherichia coli UMN026] gi|293404229|ref|ZP_06648223.1| hypothetical protein ECGG_02618 [Escherichia coli FVEC1412] gi|298380010|ref|ZP_06989615.1| hypothetical protein ECFG_02813 [Escherichia coli FVEC1302] gi|300901645|ref|ZP_07119705.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|218431450|emb|CAR12328.1| putative exported enzyme [Escherichia coli UMN026] gi|291428815|gb|EFF01840.1| hypothetical protein ECGG_02618 [Escherichia coli FVEC1412] gi|298279708|gb|EFI21216.1| hypothetical protein ECFG_02813 [Escherichia coli FVEC1302] gi|300354938|gb|EFJ70808.1| conserved hypothetical protein [Escherichia coli MS 198-1] Length = 615 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVAALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|197284624|ref|YP_002150496.1| hypothetical protein PMI0730 [Proteus mirabilis HI4320] gi|194682111|emb|CAR41705.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 571 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 175/418 (41%), Gaps = 19/418 (4%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISK 72 F Y+ ++ + + + V + + + + S P Sbjct: 150 FLGYISFVEQINQSGTTLLYRAAIQALPAPTVQAVEHFQLNLQQNTLGRFVVSFAPSHP- 208 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 ++ + + WP + + L S+ V LR+ L L Sbjct: 209 -YYPLMKEEVRK--QLHQEVIWPVMEGKNSLKPNQSAEEVIALRQILRNLNLLPQLAESE 265 Query: 132 V-----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 +DA + +AVK FQ HGL+ G++ T +N+ R + +N+ R++ Sbjct: 266 QEVATTIYDAPLIAAVKSFQAAHGLETDGIIGRQTRNWLNMTPIQRAGIMALNIQRLRLT 325 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +G + VNIP SL N ++ L S VIVGR DR+TPI+ S +N ++ NP W + Sbjct: 326 PP--IGDTGIWVNIPDYSLYFYANNQLILDSKVIVGRPDRKTPIMSSALNNVVVNPPWNV 383 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIFR--QD 301 P S+ +KD++ + DP Y + G + ++DW + NF +R Q Sbjct: 384 PTSMTRKDIVPKGKADPSYFSRKGYTIYSGWGNDAYPINPYDIDWENISAANFPYRIWQA 443 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K + Y+HDTP LF +R +SGC+RV L LL D Sbjct: 444 PGPTNSLGRYKFNMPNSEAIYLHDTPNHNLFTKNMRAISSGCIRVNKAAQLATILLGDA- 502 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 W + I+ +K T + +PV+ Y +AW +++ Q+R DIY D Sbjct: 503 GWKQDRIDAALKRGSTQYAPIPERIPVYLYYQTAWVAEENAPQYRADIYNYDQSINNA 560 >gi|26246952|ref|NP_752992.1| hypothetical protein c1067 [Escherichia coli CFT073] gi|227884110|ref|ZP_04001915.1| peptidoglycan binding domain protein [Escherichia coli 83972] gi|300978416|ref|ZP_07174264.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|301047814|ref|ZP_07194866.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|331656996|ref|ZP_08357958.1| putative amidase [Escherichia coli TA206] gi|26107352|gb|AAN79535.1|AE016758_139 Hypothetical protein ycbB [Escherichia coli CFT073] gi|227838862|gb|EEJ49328.1| peptidoglycan binding domain protein [Escherichia coli 83972] gi|300300306|gb|EFJ56691.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300409658|gb|EFJ93196.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|307552764|gb|ADN45539.1| putative peptidoglycan binding domain protein [Escherichia coli ABU 83972] gi|315291223|gb|EFU50583.1| conserved hypothetical protein [Escherichia coli MS 153-1] gi|331055244|gb|EGI27253.1| putative amidase [Escherichia coli TA206] Length = 615 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVVGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPVVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNNREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|300937730|ref|ZP_07152531.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300457237|gb|EFK20730.1| conserved hypothetical protein [Escherichia coli MS 21-1] Length = 615 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNNREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|331682434|ref|ZP_08383053.1| putative amidase [Escherichia coli H299] gi|331080065|gb|EGI51244.1| putative amidase [Escherichia coli H299] Length = 615 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVVGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPVVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|197248211|ref|YP_002145913.1| hypothetical protein SeAg_B1001 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211914|gb|ACH49311.1| YcbB [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 615 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 189/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAVVDETSVAQPVDEQTARRSKPAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 TLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|293414205|ref|ZP_06656854.1| hypothetical protein ECDG_00758 [Escherichia coli B185] gi|331651945|ref|ZP_08352964.1| putative amidase [Escherichia coli M718] gi|291434263|gb|EFF07236.1| hypothetical protein ECDG_00758 [Escherichia coli B185] gi|331050223|gb|EGI22281.1| putative amidase [Escherichia coli M718] Length = 615 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|170683737|ref|YP_001744245.1| hypothetical protein EcSMS35_2195 [Escherichia coli SMS-3-5] gi|170521455|gb|ACB19633.1| putative peptidoglycan binding domain [Escherichia coli SMS-3-5] Length = 615 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|168466590|ref|ZP_02700452.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631019|gb|EDX49605.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 614 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 121/443 (27%), Positives = 191/443 (43%), Gaps = 53/443 (11%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 126 -------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPSVRAAYDRELVEAVKRFQAWQGLGAD 336 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 GVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQV 394 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ Sbjct: 395 LASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVM 454 Query: 275 DEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 RGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHT 514 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 LFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVNL 573 Query: 391 VYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 YYLTAFVGADGRMQYRTDIYNYD 596 >gi|161503876|ref|YP_001570988.1| hypothetical protein SARI_01965 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865223|gb|ABX21846.1| hypothetical protein SARI_01965 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 644 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 191/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + S P + Sbjct: 189 YLHFIANIPVKGNRWLYSNKPYVLATPPVSVINQWQIALEEGQLPTFVASLAPQNPQ--Y 246 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +A+ + WP+L L G S V LRE L +G LD Sbjct: 247 APMHEALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 304 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 305 DDTSDSAVVSPSAVEVETLVAQPVAEQTARRSKPAPAVRAAYDRELVEAVKRFQAWQGLG 364 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 365 ADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGN 422 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + Sbjct: 423 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYT 482 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 483 VMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPN 542 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV +L LL+D W+ I +K T V + +PV Sbjct: 543 HNLFQRDARALSSGCVRVNKAPELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPV 601 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D +Q+R DIY D Sbjct: 602 NLYYLTAFVGADGRMQYRTDIYNYD 626 >gi|168237100|ref|ZP_02662158.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734245|ref|YP_002114048.1| hypothetical protein SeSA_A1110 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709747|gb|ACF88968.1| YcbB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289807|gb|EDY29168.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 615 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 190/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGTLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 S + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAAVVETSVAQPVDEQTARRSKSAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 NLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|238913232|ref|ZP_04657069.1| hypothetical protein SentesTe_19204 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 615 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 189/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAAVVETSVAQPVDEPTARHSKPAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 TLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|215486050|ref|YP_002328481.1| hypothetical protein E2348C_0918 [Escherichia coli O127:H6 str. E2348/69] gi|215264122|emb|CAS08466.1| predicted carboxypeptidase [Escherichia coli O127:H6 str. E2348/69] Length = 615 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPVVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 LMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|306812622|ref|ZP_07446815.1| hypothetical protein ECNC101_11937 [Escherichia coli NC101] gi|305853385|gb|EFM53824.1| hypothetical protein ECNC101_11937 [Escherichia coli NC101] Length = 615 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPVVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNNREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|331646190|ref|ZP_08347293.1| putative amidase [Escherichia coli M605] gi|330910705|gb|EGH39215.1| l,D-transpeptidase YcbB [Escherichia coli AA86] gi|331044942|gb|EGI17069.1| putative amidase [Escherichia coli M605] Length = 615 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQITSRSKPAPVVRAAYDNELVEAVKRFQTWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|187731093|ref|YP_001880874.1| hypothetical protein SbBS512_E2393 [Shigella boydii CDC 3083-94] gi|187428085|gb|ACD07359.1| putative peptidoglycan binding domain [Shigella boydii CDC 3083-94] Length = 615 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L LG S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRLGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|323967172|gb|EGB62596.1| ykud domain-containing protein [Escherichia coli M863] gi|327253715|gb|EGE65344.1| putative peptidoglycan binding domain protein [Escherichia coli STEC_7v] Length = 615 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPVVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLFYLTAFVGADGRTQYRTDIYNYD 597 >gi|110641122|ref|YP_668852.1| hypothetical protein ECP_0936 [Escherichia coli 536] gi|191172097|ref|ZP_03033641.1| putative peptidoglycan binding domain [Escherichia coli F11] gi|300983088|ref|ZP_07176432.1| hypothetical protein HMPREF9553_02391 [Escherichia coli MS 200-1] gi|110342714|gb|ABG68951.1| hypothetical protein YcbB [Escherichia coli 536] gi|190907624|gb|EDV67219.1| putative peptidoglycan binding domain [Escherichia coli F11] gi|300306992|gb|EFJ61512.1| hypothetical protein HMPREF9553_02391 [Escherichia coli MS 200-1] gi|324009854|gb|EGB79073.1| hypothetical protein HMPREF9532_00405 [Escherichia coli MS 57-2] gi|324012952|gb|EGB82171.1| hypothetical protein HMPREF9533_03020 [Escherichia coli MS 60-1] Length = 615 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVVGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS--- 131 A +++ + WP+L + L G S V LRE L +G LD ++ Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 132 ---------------------------------------VAFDAYVESAVKLFQMRHGLD 152 A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPVPVVRAAYDNELVEAVKRFQTWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|312969009|ref|ZP_07783216.1| putative peptidoglycan binding domain protein [Escherichia coli 2362-75] gi|312286411|gb|EFR14324.1| putative peptidoglycan binding domain protein [Escherichia coli 2362-75] Length = 611 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 156 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 213 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 214 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 271 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 272 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPVVRAAYDNELVEAVKRFQAWQGLG 331 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 332 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 389 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 390 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 449 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 450 LMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 509 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 510 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 568 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 569 NLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|309701201|emb|CBJ00501.1| putative exported protein [Escherichia coli ETEC H10407] Length = 615 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 188/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LCDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q G N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQASGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|325106518|ref|YP_004276172.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] gi|324975366|gb|ADY54350.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] Length = 548 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 105/390 (26%), Positives = 179/390 (45%), Gaps = 23/390 (5%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLAR-VDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 AS + +D D+ L + P+ + + + Y+++ S Sbjct: 171 KASKSVQWYVPRKKVSYSDLLDSLLTNKSSVYTVEGRPVYRQ--YMLLKSFLTKYRELES 228 Query: 91 RGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + + + +G+SS ++ ++R+RL GD S LS +DA ++ AV FQ Sbjct: 229 QREVTTIGLDAGKKSYKIGDSSDNIVKIRKRLHFLGDYKESDTLSALYDANLKEAVSNFQ 288 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 RHGL G++ + T++ MNVP+ R++ + VN+ R + + + Y+ VNIP L Sbjct: 289 ERHGLTNDGVIGAGTIKEMNVPLRDRVKTIIVNMERFRWVPAG-LNKEYLGVNIPEYKLH 347 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 + V+VG+ +T + + I+F+PYW +P SI++ +++ + ++ YL Sbjct: 348 VYNADSLLWSCNVVVGKELHKTVVFQGDLKYIVFSPYWNVPPSIVRNEILPAMNRNAGYL 407 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 K +N+ + E + RQ PGK N++ K F + N Y+HDT Sbjct: 408 KQHNMEI---------------TGHENGLPVIRQLPGKDNSLGLVKFLFPNNFNIYLHDT 452 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF+ R + GC+RV L +LLKD W I++ + K V L V Sbjct: 453 PAKSLFSMEDRAFSHGCIRVSEPKKLAEFLLKDDKAWDSISIDKAMHQTKEKWVTLKNPV 512 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 PV Y +A+ + I FR DIY D+ Sbjct: 513 PVFISYFTAFVDRKGQINFRKDIYDRDSAL 542 >gi|315296218|gb|EFU55525.1| conserved hypothetical protein [Escherichia coli MS 16-3] Length = 615 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS--- 131 A +++ + WP+L + L G S V LRE L +G LD ++ Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 132 ---------------------------------------VAFDAYVESAVKLFQMRHGLD 152 A+D + AVK FQ GL Sbjct: 276 DDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPVPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|320177116|gb|EFW52131.1| L,D-transpeptidase YcbB [Shigella dysenteriae CDC 74-1112] Length = 611 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 156 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 213 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 214 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 271 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 272 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 331 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 332 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 389 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 390 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 449 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 450 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPT 509 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 510 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 568 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 569 NLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|260597325|ref|YP_003209896.1| murein L,D-transpeptidase [Cronobacter turicensis z3032] gi|260216502|emb|CBA29674.1| Uncharacterized protein ycbB [Cronobacter turicensis z3032] Length = 521 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 123/448 (27%), Positives = 192/448 (42%), Gaps = 43/448 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S +++N + V + S P+ Sbjct: 79 YLQFISGIPSQGNRWLYSEKPYKPEMPALNVLNQWQVALDNGSVPAFVRSLAPVHP--HY 136 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A ++ + WP++ + L G S V L+E L +G LD Sbjct: 137 AAMHASLLQL--VADTRPWPQMTGKEKLRPGQWSSDVPALKEILQRTGMLDGGPDIVLPG 194 Query: 126 -------------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 K +D + +AVK FQ GL G++ ST + +N Sbjct: 195 DNNGVVSPSAASQPASQTSTPKPARAVYDKDLVAAVKRFQKWQGLGADGVIGQSTRDWLN 254 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 V R L +N+ R++ L + ++VNIP SL +NG L S VIVGR DR Sbjct: 255 VTPAQRAALLALNIQRLRLLPGKL--STGIMVNIPEYSLVYYQNGSPVLASRVIVGRPDR 312 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFV 283 +TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + +++ G V Sbjct: 313 KTPLMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLESHGYTVLNGWGSNADVVDP 372 Query: 284 EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 VDW + P N FR Q PG N++ K S + Y+HDTP LF R +S Sbjct: 373 WMVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDSRALSS 432 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ +D Sbjct: 433 GCVRVNKASELANMLLQDA-GWNDSRISQTLKEGNTRYVNIPQTIPVNLYYLTAFIGEDG 491 Query: 402 IIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 Q+R DIY D G LP+ + Sbjct: 492 RPQYRTDIYNYDHTARSGAQILPKVEQL 519 >gi|301023047|ref|ZP_07186856.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|300397253|gb|EFJ80791.1| conserved hypothetical protein [Escherichia coli MS 69-1] Length = 615 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKDQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|293409302|ref|ZP_06652878.1| hypothetical protein ECEG_00235 [Escherichia coli B354] gi|291469770|gb|EFF12254.1| hypothetical protein ECEG_00235 [Escherichia coli B354] Length = 615 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITDSNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|170742780|ref|YP_001771435.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168197054|gb|ACA19001.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 545 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 138/357 (38%), Positives = 200/357 (56%), Gaps = 9/357 (2%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 P ++ T T + YQ I+ GGWP +P L G+ V LR RL + DL Sbjct: 127 TPTLTPATFLDTLRMADRYQAIVQAGGWPSVPASLSLKPGDRHPGVLALRRRLAATEDLP 186 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 +S D + +AV FQ RHGL +G+V + T++A+NVP +R RQL + R+ Sbjct: 187 ADAPVSDRMDEALVAAVTRFQHRHGLPETGLVGAMTVKALNVPASVRQRQLAASAARLMG 246 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 G RYV+ NIPAA++EAVE G V R +VG+ DR +P++ +RI + FNP W Sbjct: 247 -SRFPFGERYVVANIPAAAVEAVERGAVVRRYVAVVGKPDRASPMVETRITNVNFNPTWT 305 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S+I+KD++ +R+DP YL +I M+D +G EV +DW++ + N+ RQDPG Sbjct: 306 VPVSLIKKDIIPHMRKDPGYLAKMHIRMLDGQGNEVQPTAIDWSTEKAVNYTVRQDPGFD 365 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ +I+ +R+ YMHDTP LF +RF +SGCVRV + L WLL+ TP Sbjct: 366 NSLGQVRIDMPNRHAVYMHDTPSKSLFTRTIRFHSSGCVRVAEVKGLVAWLLEGTPGPGG 425 Query: 366 Y-------HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 IE + T + +KLA VPV FVY++ ++ D FRDD+Y LD Sbjct: 426 PGTVWGPIEIETGIATGERRDIKLAKPVPVTFVYLTGYATPDGRAHFRDDVYNLDGA 482 >gi|300925397|ref|ZP_07141282.1| hypothetical protein HMPREF9548_03475 [Escherichia coli MS 182-1] gi|300418467|gb|EFK01778.1| hypothetical protein HMPREF9548_03475 [Escherichia coli MS 182-1] Length = 615 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQMTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVENPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|205360811|ref|ZP_02686636.2| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205346897|gb|EDZ33528.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 640 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 185 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 242 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A A+ + WP+L L G S V LRE L +G LD Sbjct: 243 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 300 Query: 126 ----------PSKGLSVA-----------------------FDAYVESAVKLFQMRHGLD 152 PS + +D + AVK FQ GL Sbjct: 301 DNTADSAVVSPSAVVDETSVAQPVDEQTARRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 360 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 361 ADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGN 418 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + Sbjct: 419 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYT 478 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 479 VMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPN 538 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV +L LL+D W+ I +K T V + +PV Sbjct: 539 HTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPV 597 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D +Q+R DIY D Sbjct: 598 NLYYLTAFVGADGRMQYRTDIYNYD 622 >gi|161614766|ref|YP_001588731.1| hypothetical protein SPAB_02518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364130|gb|ABX67898.1| hypothetical protein SPAB_02518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 615 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 189/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAVADETSVAQPVDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 TLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|255035938|ref|YP_003086559.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] gi|254948694|gb|ACT93394.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] Length = 540 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 114/410 (27%), Positives = 182/410 (44%), Gaps = 31/410 (7%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 FF Y L K I+ L+ I D+ L + + P+ Sbjct: 145 FFRYTDLAYSGD---KRINTQELNWFI-PRRKLNPEVFLDSLLKNKGQNVAAYEPV--NR 198 Query: 74 TIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 ++ + Y I G + + G+ + L+ RL + GDL Sbjct: 199 HYNLLKQKVLEYYTITKNGEPAAVDTDKKFREGDRDTLITALKTRLHLLGDLPEPDSTP- 257 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 FD + +AVK FQ R G +G+ + + +NVPV RIRQ+ +N+ RI+ + Sbjct: 258 VFDTTLTAAVKHFQQRVGQKQTGVTGPAFFKELNVPVTARIRQMLINMERIRWMPAAPPT 317 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 Y+LVNIP +L A E+GK+ V+VG T I +N+++F+PYW +P SI++ Sbjct: 318 D-YILVNIPEFTLHAYEDGKLSFDMVVVVGSEANSTVIFSGTLNQVVFSPYWNVPTSILK 376 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 K+++ ++++P YL +N+ WN RQ PGK N++ K Sbjct: 377 KEVLPGIKKNPNYLARHNME---------------WNGGS-----VRQKPGKSNSLGLVK 416 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F + + Y HDTP LF R + GC+R+ + WLL+ TW+ I + Sbjct: 417 FLFPNSYSIYFHDTPSKSLFKESQRAFSHGCIRLAEPKKMAEWLLRRDSTWTSEKITAAM 476 Query: 373 KTRKTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + K V+L EVPV Y ++W + +QFR D+YG D + Sbjct: 477 NSGKEKYVRLRGKNEVPVFIGYFTSWVDQHGNLQFRKDVYGHDRRMEERL 526 >gi|206576426|ref|YP_002239427.1| putative peptidoglycan binding protein [Klebsiella pneumoniae 342] gi|288936277|ref|YP_003440336.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] gi|206565484|gb|ACI07260.1| putative peptidoglycan binding protein [Klebsiella pneumoniae 342] gi|288890986|gb|ADC59304.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] Length = 596 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 115/422 (27%), Positives = 184/422 (43%), Gaps = 32/422 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + S++N + + I P + Sbjct: 164 YLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPHHPQ--Y 221 Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSK------ 128 +++ + WP++ L G S + LRE L +G LD + Sbjct: 222 EAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDIGALREILQRTGMLDNTANIVLPG 279 Query: 129 -------------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 +D + VK FQ GL G++ ST + +NV R Sbjct: 280 DVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGV 339 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L +N+ R++ L + ++VNIPA SL ++G L S VIVGR DR+TP++ S + Sbjct: 340 LALNIQRLRLLPGKL--STGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSAL 397 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEP 293 N ++ NP W +P ++ +KD++ +R +P YL+ + ++ + VDW++ Sbjct: 398 NNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITE 457 Query: 294 PNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 N FR Q PG N++ K S + Y+HDTP LF VR +SGCVRV + Sbjct: 458 NNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASE 517 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL+D W+ I + +K T V + +PV+ Y++A+ D Q+R DIY Sbjct: 518 LANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYN 576 Query: 412 LD 413 D Sbjct: 577 YD 578 >gi|30250492|ref|NP_842562.1| putative periplasmic protein [Nitrosomonas europaea ATCC 19718] gi|30139333|emb|CAD86485.1| putative periplasmic protein [Nitrosomonas europaea ATCC 19718] Length = 578 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 112/427 (26%), Positives = 208/427 (48%), Gaps = 22/427 (5%) Query: 19 ILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMG-----IDSDIPIISK 72 +L + L + A++ D + + +A VD + + +P Sbjct: 150 LLALVHDLSNGRLTATLADPDWYVPQRRLDPVNFLQQSIASVDSAEQLEQVLASLPPNMP 209 Query: 73 ETIAQTEKAIAFYQDILSRGG-WPELPIR--PLHLGNSSVSVQRLRERLIIS------GD 123 + ++ + + +++ G W +P +H ++ +R+R+ + + Sbjct: 210 Q-YHTLKRLLVRLRILVAAGTVWTRIPDDIPSIHPRTRHAAIPLIRQRIREAYSVFEKPE 268 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 D + S +D +E+A+K FQ ++GL+ G+V +T AMN+ I+QL++ L R+ Sbjct: 269 YDIASDDSELYDDQLETAIKAFQYQYGLNTDGVVGKNTRRAMNMTAVEHIQQLRITLERL 328 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + RY+LVNI +L A+ N L ++VGR R TP +SRI+ ++ NPY Sbjct: 329 RWLPRE-FSNRYILVNIAGFNLAAIRNNVRVLNMRIVVGRDYRSTPSFNSRISHLVLNPY 387 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEVDWNSPE-PPNFIFRQ 300 W +P SI KD++ + +P Y I + + E+ + +DW++ ++ RQ Sbjct: 388 WNVPASIASKDLLPKQKHNPDYFASEGIRVFSDYHYELELDPDAIDWHAFSRSFPYVLRQ 447 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 DPGK NA+ + K F + + Y+HDTP LF +R +SGC+R+ + L ++L Sbjct: 448 DPGKRNALGTIKFMFPNPFSIYLHDTPSKSLFQRDIRTFSSGCIRLEKPMQLAEFVLG-- 505 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 P++ + +I E + + KT V L +PV+ +Y++AW+ + F D+YG D + Sbjct: 506 PSFEKANILEKIDSGKTQTVHLPEPIPVYLLYLTAWNDGQGEVHFSADVYGRDKRALAYA 565 Query: 421 PLPEDHP 427 + P Sbjct: 566 RWLQPEP 572 >gi|284007574|emb|CBA73124.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 563 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 110/384 (28%), Positives = 184/384 (47%), Gaps = 17/384 (4%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HL 104 S ++ ++ I + P + + + Y + + WP++ L Sbjct: 178 SQWQTAINSK--QLASWIKTLAPQHA--SYLPMRTKMLAY--LADQQIWPKINTVSLLKP 231 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +S + L E L +G L + + AVK FQ +GL+P G++ ++TL Sbjct: 232 GQTSNDLVSLSEILTRNGLLTQDADTDNTRHYGGLLVDAVKQFQRMYGLEPDGIIGNATL 291 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + +N R L +N+ R++ + + G +LVNIPA +L N ++ + S VIVG Sbjct: 292 KWLNTSPTDRAGLLAINIQRLRIIPNE--GGSGILVNIPAYTLHFYLNNQLIIDSKVIVG 349 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--- 279 R DR+TPI+ S +N ++ NP W +P S+++KD++ R+DP Y ++ + Sbjct: 350 RPDRKTPIMSSELNSVVINPPWNVPTSMVRKDILPQARRDPGYFARRGFTVLSGWERNAY 409 Query: 280 EVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + ++WN+ + RQ PG NA+ K S + Y+HDTP LFN R Sbjct: 410 PIDPYSINWNAISSSSFPYRVRQAPGPSNALGRYKFNMPSSDAIYLHDTPNHSLFNRQNR 469 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVRV L LL +W + I+ ++ +T + + +P++ Y +AW Sbjct: 470 SISSGCVRVNKASVLASILLARA-SWDQKRIDGALQLGETRYINIPGRIPIYLYYQTAWV 528 Query: 398 PKDSIIQFRDDIYGLDNVHVGIIP 421 +I FRDDIYG DNV G + Sbjct: 529 DNKNIANFRDDIYGYDNVIYGAMN 552 >gi|261246211|emb|CBG24015.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 613 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 119/442 (26%), Positives = 188/442 (42%), Gaps = 52/442 (11%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 -------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + A+D + AVK FQ GL G Sbjct: 277 DNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADG 336 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG L Sbjct: 337 VIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQVL 394 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + D YL+ + ++ Sbjct: 395 ASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDLGYLERHGYTVMR 454 Query: 276 EKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + + +VDW + P N FR Q PG N++ K S + Y+HDTP L Sbjct: 455 GWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTL 514 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 FQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVNLY 573 Query: 392 YISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 YLTAFVGADGRMQYRTDIYNYD 595 >gi|291281926|ref|YP_003498744.1| putative peptidoglycan binding domain protein [Escherichia coli O55:H7 str. CB9615] gi|209774748|gb|ACI85686.1| putative amidase [Escherichia coli] gi|209774754|gb|ACI85689.1| putative amidase [Escherichia coli] gi|290761799|gb|ADD55760.1| Putative peptidoglycan binding domain protein [Escherichia coli O55:H7 str. CB9615] gi|320642918|gb|EFX12119.1| murein L,D-transpeptidase [Escherichia coli O157:H- str. 493-89] gi|320648375|gb|EFX17030.1| murein L,D-transpeptidase [Escherichia coli O157:H- str. H 2687] gi|320653691|gb|EFX21765.1| murein L,D-transpeptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659836|gb|EFX27392.1| murein L,D-transpeptidase [Escherichia coli O55:H7 str. USDA 5905] gi|320664305|gb|EFX31456.1| murein L,D-transpeptidase [Escherichia coli O157:H7 str. LSU-61] Length = 615 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 120/447 (26%), Positives = 186/447 (41%), Gaps = 59/447 (13%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHS---IVNDRFDNFLARVDMGIDSDIPIISKE 73 YL + + S + S D ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQQALDK--GQLPTFVAGLAPQHPQ- 216 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 217 -YAAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITL 273 Query: 126 -----------------------------------PSKGLSVAFDAYVESAVKLFQMRHG 150 P+ + A+D + AVK FQ G Sbjct: 274 PGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQG 333 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G + +T + +NV R L +N+ R++ L + ++VNIPA SL +N Sbjct: 334 LGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQN 391 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 392 GNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHG 451 Query: 271 IHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDT 326 ++ + +VDW++ N FR Q PG N++ K S Y+HDT Sbjct: 452 YTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDT 511 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF R +SGCVRV DL LL+D W+ I + +K T V + + Sbjct: 512 PNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSI 570 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLD 413 PV+ Y++A+ D Q+R DIY D Sbjct: 571 PVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|89054636|ref|YP_510087.1| peptidoglycan binding domain-containing protein [Jannaschia sp. CCS1] gi|88864185|gb|ABD55062.1| Peptidoglycan-binding domain 1 [Jannaschia sp. CCS1] Length = 531 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 101/413 (24%), Positives = 186/413 (45%), Gaps = 18/413 (4%) Query: 17 YLILPMGLSLVEKPIHAS-VLDEIINESYHSIVNDRF-DNFLARVDMGIDSDIPIISKET 74 L L + + ++ +I++ + F + A I + P Sbjct: 120 LLFLQYAQDIHSGFLEPGDIVGDIVHTLPRRDPLELFTEFVSANPYEYIATLPPQHP--E 177 Query: 75 IAQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + +A + ++ GG+ + L G + +V +LR RL+ G LD S Sbjct: 178 YTRLMRAKLHLERMIDEGGYGATVQAGSLTPGATGSAVVQLRNRLMAMGYLDRSATA--T 235 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D ++ AV FQ+ +G++ G+ T+ A+N + ++ + + R + L G Sbjct: 236 YDTRLQQAVMEFQVDNGINADGIAGGDTIRAVNRSATEHLSEVILAMERQRWLNV-DRGP 294 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR--QTPILHSRINRIMFNPYWVIPRSII 251 R++ VN+P +++G+V + ++G DR +TP + ++ NP W +PRSI Sbjct: 295 RHIFVNLPDFHTRVIDDGEVTFITRSVIGSRDRDRRTPEFSDEMEHMVINPSWYVPRSIA 354 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 + + +++ +L+ + G+ V VDW+ NF F RQ PG NA+ Sbjct: 355 RGYIPSIMAGGANHLQ------LMSNGRPVNRGAVDWSRVSAGNFPFDLRQPPGPRNALG 408 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F ++ N Y+HD+P+ L + VR ++GCVR+ + +L LL Sbjct: 409 LVKFMFPNQWNIYLHDSPDQHLMTHDVRAYSAGCVRLDDPFELAYHLLAAQEDDPVTFFN 468 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 ++ + + T V L T +PVH VY ++W + + FR+DIYG + I Sbjct: 469 TILNSSRETQVNLQTPLPVHIVYWTSWVDTEGRLNFRNDIYGRNAELRQAIQN 521 >gi|224582805|ref|YP_002636603.1| hypothetical protein SPC_0996 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467332|gb|ACN45162.1| hypothetical protein SPC_0996 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 639 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 189/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 185 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 242 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 243 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQCTGMLDGGPKIALPG 300 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 S + A+D + AVK FQ GL Sbjct: 301 DNTADSAVVSPSAAVVETSVAQPVDEPTARRSKSAPAARAYDRELVEAVKRFQAWQGLGA 360 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 361 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 418 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 419 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 478 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 479 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 538 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 539 NLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVN 597 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+ DIY D Sbjct: 598 LYYLTAFVGADGRMQYHTDIYNYD 621 >gi|218700556|ref|YP_002408185.1| hypothetical protein ECIAI39_2222 [Escherichia coli IAI39] gi|218370542|emb|CAR18349.1| putative exported enzyme [Escherichia coli IAI39] Length = 615 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNNREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTCYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|290510667|ref|ZP_06550037.1| ycbB [Klebsiella sp. 1_1_55] gi|289777383|gb|EFD85381.1| ycbB [Klebsiella sp. 1_1_55] Length = 596 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 115/422 (27%), Positives = 185/422 (43%), Gaps = 32/422 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + S++N + + + I P + Sbjct: 164 YLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQLALDNGSLPVFIAGLAPHHPQ--Y 221 Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSK------ 128 +++ + WP++ L G S + LRE L +G LD + Sbjct: 222 EAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDIGALREILQRTGMLDNTANIVLPG 279 Query: 129 -------------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 +D + VK FQ GL G++ ST + +NV R Sbjct: 280 DVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGV 339 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L +N+ R++ L + ++VNIPA SL ++G L S VIVGR DR+TP++ S + Sbjct: 340 LALNIQRLRLLPGKL--STGIMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSAL 397 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEP 293 N ++ NP W +P ++ +KD++ +R +P YL+ + ++ + VDW++ Sbjct: 398 NNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITE 457 Query: 294 PNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 N FR Q PG N++ K S + Y+HDTP LF VR +SGCVRV + Sbjct: 458 NNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASE 517 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL+D W+ I + +K T V + +PV+ Y++A+ D Q+R DIY Sbjct: 518 LANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYN 576 Query: 412 LD 413 D Sbjct: 577 YD 578 >gi|197266013|ref|ZP_03166087.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244268|gb|EDY26888.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 614 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 121/443 (27%), Positives = 191/443 (43%), Gaps = 53/443 (11%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 126 -------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ + A+D + AVK FQ GL Sbjct: 277 DNTADSSVVSPSAVVDETSVAHDEPTARRSKPAPAVRAAYDNELVEAVKRFQAWQGLGAD 336 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 GVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQV 394 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ Sbjct: 395 LASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVM 454 Query: 275 DEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 RGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHT 514 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 515 LFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVNL 573 Query: 391 VYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 YYLTAFVGADGRMQYRTDIYNYD 596 >gi|323138298|ref|ZP_08073369.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322396381|gb|EFX98911.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 387 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 123/355 (34%), Positives = 198/355 (55%), Gaps = 5/355 (1%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 P++ ET T KA Y I+ GGWP++ L G+ +V LR RL D Sbjct: 35 APVLQPETFFTTSKASERYAQIVDLGGWPKV-GVSLRPGSKGPAVSTLRRRLAAEDD-AV 92 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + ++D + AVK FQ R GL +G+V +TL A++VP +R RQL + R+ Sbjct: 93 TDTNKQSWDPALTEAVKRFQFRMGLKQTGVVAGATLRALDVPATVRFRQLASSAQRLAG- 151 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++ G RY++VNIP+ +++AV+N +V R IVG + +P + +++ + NP W + Sbjct: 152 VDFPFGPRYIVVNIPSTAVDAVDNDRVVRRYAAIVGDPEHHSPEVQAKVVAVNINPTWTV 211 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SII+ ++ + +DP YL + I +++ +G+EV ++W S N+ RQD G N Sbjct: 212 PTSIIKNEIAPKMLKDPSYLTRSRIRVLNGRGEEVDPRSINWASERAVNYTLRQDSGAHN 271 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT--PTWS 364 ++ S +I + ++ YMHDTP LF + RF + GCVRV+ ++DL WLL + P S Sbjct: 272 SLGSIRISMPNPHSVYMHDTPSRNLFASDYRFLSHGCVRVQGVVDLAAWLLDGSNGPQLS 331 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 + I + + + V+L+ VPV +VY++ W+ D I+ FRDD+Y LD V Sbjct: 332 KEQINAKIASGEREEVRLSHPVPVVWVYMTGWASADGIVHFRDDVYHLDEVGGAA 386 >gi|205352202|ref|YP_002226003.1| hypothetical protein SG0937 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856386|ref|YP_002243037.1| hypothetical protein SEN0899 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205271983|emb|CAR36827.1| putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708189|emb|CAR32482.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627246|gb|EGE33589.1| putative peptidoglycan binding domain-containing protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 616 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 126 ----------PSKGLSVA-----------------------FDAYVESAVKLFQMRHGLD 152 PS + +D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAVVDETSVAQPVDEQTARRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 336 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 ADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGN 394 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + Sbjct: 395 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYT 454 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 VMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPN 514 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV +L LL+D W+ I +K T V + +PV Sbjct: 515 HTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPV 573 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D +Q+R DIY D Sbjct: 574 NLYYLTAFVGADGRMQYRTDIYNYD 598 >gi|117920121|ref|YP_869313.1| peptidoglycan binding domain-containing protein [Shewanella sp. ANA-3] gi|117612453|gb|ABK47907.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. ANA-3] Length = 560 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 114/440 (25%), Positives = 210/440 (47%), Gaps = 25/440 (5%) Query: 12 YCFFVYL---ILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRF-----DNFLARVDMG 62 F V L I+ + L+ ++ S+L + N + H + V Sbjct: 118 SVFEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDETHLDFDTTLKQLEEHIKAHTVADA 177 Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIIS 121 I P I Q ++ +A Y+D+ +R + +P + G++S SVQ + RL Sbjct: 178 IAGLAPKIEP--YHQLKQYLAQYKDLAARYPFSPIPYTEVIKPGSTSPSVQGIATRLTEL 235 Query: 122 GDLDPSKGLSV--------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 G L S +D+ +E+AV+ FQ H L G++ + T+ A+NVP + Sbjct: 236 GYLAASAPADNSAAVNQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQLV 295 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 Q+++NL R + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ S Sbjct: 296 DQIRINLERARWL-SANLPTNYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKS 354 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP-- 291 ++ ++ NP W +PRSI +++ LR++P YL+ + +++ G V +DW+S Sbjct: 355 KLKYVVVNPTWTVPRSI-STEIINHLRKEPDYLQKKHFKVVEGSGTPVDASGIDWHSMTR 413 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + + F QDPG+ N++ K F ++ + Y+HDTP LF R + GC+RV++ + Sbjct: 414 KNFPYWFVQDPGEDNSLGLVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLV 473 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL WS + + KT + L + + +Y + KD I+F +D+Y Sbjct: 474 LADKLLSANANWSSSTLSSKLSEGKTENLFLDEPLDILIMYWTVTL-KDGKIKFYNDVYK 532 Query: 412 LDNVHVGIIPLPEDHPIDSD 431 D V + + P + +D Sbjct: 533 RDPVLIEALNRPTYEGVLAD 552 >gi|323174974|gb|EFZ60589.1| putative peptidoglycan binding domain protein [Escherichia coli LT-68] Length = 615 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 188/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q G N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQASGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|15800786|ref|NP_286800.1| hypothetical protein Z1272 [Escherichia coli O157:H7 EDL933] gi|15830262|ref|NP_309035.1| hypothetical protein ECs1008 [Escherichia coli O157:H7 str. Sakai] gi|168751189|ref|ZP_02776211.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4113] gi|168757018|ref|ZP_02782025.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4401] gi|168762937|ref|ZP_02787944.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4501] gi|168769921|ref|ZP_02794928.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4486] gi|168787355|ref|ZP_02812362.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC869] gi|195939660|ref|ZP_03085042.1| hypothetical protein EscherichcoliO157_25185 [Escherichia coli O157:H7 str. EC4024] gi|208822650|ref|ZP_03262969.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4042] gi|217326231|ref|ZP_03442315.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254792124|ref|YP_003076961.1| hypothetical protein ECSP_1029 [Escherichia coli O157:H7 str. TW14359] gi|261227428|ref|ZP_05941709.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. FRIK2000] gi|261256149|ref|ZP_05948682.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. FRIK966] gi|12514097|gb|AAG55410.1|AE005282_5 putative amidase [Escherichia coli O157:H7 str. EDL933] gi|13360467|dbj|BAB34431.1| putative amidase [Escherichia coli O157:H7 str. Sakai] gi|188014739|gb|EDU52861.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4113] gi|189355931|gb|EDU74350.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4401] gi|189361134|gb|EDU79553.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4486] gi|189366781|gb|EDU85197.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4501] gi|189372669|gb|EDU91085.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC869] gi|208738135|gb|EDZ85818.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4042] gi|209774750|gb|ACI85687.1| putative amidase [Escherichia coli] gi|209774752|gb|ACI85688.1| putative amidase [Escherichia coli] gi|209774756|gb|ACI85690.1| putative amidase [Escherichia coli] gi|217322452|gb|EEC30876.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254591524|gb|ACT70885.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. TW14359] gi|320637793|gb|EFX07585.1| murein L,D-transpeptidase [Escherichia coli O157:H7 str. G5101] gi|326338180|gb|EGD62009.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. 1125] Length = 615 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 120/447 (26%), Positives = 186/447 (41%), Gaps = 59/447 (13%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHS---IVNDRFDNFLARVDMGIDSDIPIISKE 73 YL + + S + S D ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQQALDK--GQLPTFVAGLAPQHPQ- 216 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 217 -YAVMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITL 273 Query: 126 -----------------------------------PSKGLSVAFDAYVESAVKLFQMRHG 150 P+ + A+D + AVK FQ G Sbjct: 274 PGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQG 333 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G + +T + +NV R L +N+ R++ L + ++VNIPA SL +N Sbjct: 334 LGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQN 391 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 392 GNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHG 451 Query: 271 IHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDT 326 ++ + +VDW++ N FR Q PG N++ K S Y+HDT Sbjct: 452 YTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDT 511 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF R +SGCVRV DL LL+D W+ I + +K T V + + Sbjct: 512 PNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSI 570 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLD 413 PV+ Y++A+ D Q+R DIY D Sbjct: 571 PVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|194434397|ref|ZP_03066660.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1012] gi|194417381|gb|EDX33487.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1012] gi|320182006|gb|EFW56911.1| L,D-transpeptidase YcbB [Shigella boydii ATCC 9905] Length = 615 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPD 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYTYD 597 >gi|198244692|ref|YP_002214919.1| hypothetical protein SeD_A1060 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939208|gb|ACH76541.1| YcbB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622672|gb|EGE29017.1| YcbB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 616 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 191/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAVVDEPSVAQPVDEQTARRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 336 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 ADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGN 394 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + Sbjct: 395 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYT 454 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 VMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPN 514 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV +L LL+D W+ I +K T V + +PV Sbjct: 515 HTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPV 573 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D +Q+R DIY D Sbjct: 574 NLYYLTAFVGADGRMQYRTDIYNYD 598 >gi|126666378|ref|ZP_01737357.1| hypothetical protein MELB17_12356 [Marinobacter sp. ELB17] gi|126629179|gb|EAZ99797.1| hypothetical protein MELB17_12356 [Marinobacter sp. ELB17] Length = 566 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 116/417 (27%), Positives = 186/417 (44%), Gaps = 25/417 (5%) Query: 29 KPIHASVLDEIINESY--HSIVNDRFDNFLARVDMGIDSDIPIIS-----KETIAQTEKA 81 + +D + ++ D + S + Sbjct: 125 THLQRGKVDPYQIDPQWEIPVMARALDYQGISEAVDAQRFEQAFSLARPYPAPYQRLRAG 184 Query: 82 IAFYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA------ 133 +A+Y++I GGW +LP RP L G+ V LR+RL + G L +S Sbjct: 185 LAYYRNIQLEGGWQQLPQRPQSLRPGDVDADVPLLRQRLAMIGGLGLQNAMSAVQPEEQT 244 Query: 134 -----FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 +D + AV+LFQ H L+ G+V T A NV VD RI Q++ NL R + LL Sbjct: 245 ATLLEYDEAMVGAVRLFQRHHLLEADGIVGQQTRNAFNVSVDERINQIRANLERARWLL- 303 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++LV+I + RS ++VG+ R TP L S I + NP W +P Sbjct: 304 HGEASAFILVDIAGYRISYFRPNGEIWRSRIVVGQPYRSTPSLRSEITHLTVNPTWTVPP 363 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I ++D + +R D YL N+ ++D +G+ + +++DW P + + RQ PG +NA+ Sbjct: 364 TIYREDSLPKIRDDIGYLYRQNMSVLDLRGQRLDPQQIDWW--NPGSIMLRQGPGPMNAL 421 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + F + + Y+HDTP LF R +SGC+RV+ I +L L DT + + Sbjct: 422 GQLVLRFPNNHLVYLHDTPAQALFGRQQRAFSSGCIRVQGITELAQLLFDDT--DTAADV 479 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPED 425 + ++ T T +KL +PV Y + +D + FR DIY D + P Sbjct: 480 KALIATGDTRNIKLRRTMPVILHYWTVHPGEDGELVFRPDIYQQDARLQKALDQPLG 536 >gi|62179522|ref|YP_215939.1| hypothetical protein SC0952 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127155|gb|AAX64858.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713990|gb|EFZ05561.1| N-6 adenine-specific DNA methylase, conserved site [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 615 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 189/444 (42%), Gaps = 54/444 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 S + A+D + AVK FQ GL Sbjct: 277 DNTADSAVVSPSAAVVETSVAQPVDEPTARRSKSAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV +L LL+D W+ I +K T V + PV+ Sbjct: 515 NLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNTPVN 573 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 574 LYYLTAFVGADGRMQYRTDIYNYD 597 >gi|218548441|ref|YP_002382232.1| hypothetical protein EFER_1069 [Escherichia fergusonii ATCC 35469] gi|218355982|emb|CAQ88598.1| putative exported enzyme [Escherichia fergusonii ATCC 35469] gi|324113744|gb|EGC07719.1| ykud domain-containing protein [Escherichia fergusonii B253] gi|325496863|gb|EGC94722.1| hypothetical protein ECD227_0960 [Escherichia fergusonii ECD227] Length = 615 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFTANIPVKGTRWLYSSKPYALATPPLSVINQWQVALDNGQLPAFVAGLAPKHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS--- 131 +++ + WP+L + L G S V LRE L +G L+ ++ Sbjct: 218 TAMHESLLTL--LADTKPWPQLTGKTTLRPGQWSNDVPALREILQRTGMLEGGPKIALPG 275 Query: 132 ---------------------------------------VAFDAYVESAVKLFQMRHGLD 152 A+D + AVK FQ GL Sbjct: 276 DETPAEAVVSPSAVAVETSETKPLDKQTEPRKKAAPAVRAAYDKELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL ++G Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQDGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + +VDW++ N FR Q PG N++ K S + Y+HDTP Sbjct: 454 VMRGWNSKEAIDPWQVDWSTITASNLPFRFQQAPGARNSLGRYKFNMPSTDAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV +L LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASELANMLLQDA-GWNDKRISDALKQGDTRYVNIRQTIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|170769178|ref|ZP_02903631.1| putative peptidoglycan binding domain [Escherichia albertii TW07627] gi|170121830|gb|EDS90761.1| putative peptidoglycan binding domain [Escherichia albertii TW07627] Length = 615 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 117/445 (26%), Positives = 193/445 (43%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQVALDNGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G L+ Sbjct: 218 AAMHESLLAL--LSDNKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLEGGPKIALPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+++ + +AVK FQ GL Sbjct: 276 DDTQPDGAVSPSAAAVETAGTQPINRQTTAHSKPAPAVRAAYNSELVNAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGTIGPATRDWLNVTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSKEAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV +L LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASELANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|332095888|gb|EGJ00895.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 155-74] Length = 611 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 156 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 213 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 214 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPD 271 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 272 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 331 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 332 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 389 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 390 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 449 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 450 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 509 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 510 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 568 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 569 NLYYLTAFVGADGRTQYRTDIYTYD 593 >gi|187776221|ref|ZP_02801228.2| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4196] gi|208809460|ref|ZP_03251797.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815467|ref|ZP_03256646.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4045] gi|209399966|ref|YP_002269597.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4115] gi|187768375|gb|EDU32219.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4196] gi|208729261|gb|EDZ78862.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732115|gb|EDZ80803.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4045] gi|209161366|gb|ACI38799.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4115] gi|320192589|gb|EFW67230.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. EC1212] gi|326346157|gb|EGD69895.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. 1044] Length = 611 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 120/447 (26%), Positives = 186/447 (41%), Gaps = 59/447 (13%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHS---IVNDRFDNFLARVDMGIDSDIPIISKE 73 YL + + S + S D ++ + P + Sbjct: 156 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQQALDK--GQLPTFVAGLAPQHPQ- 212 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 213 -YAVMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITL 269 Query: 126 -----------------------------------PSKGLSVAFDAYVESAVKLFQMRHG 150 P+ + A+D + AVK FQ G Sbjct: 270 PGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQG 329 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G + +T + +NV R L +N+ R++ L + ++VNIPA SL +N Sbjct: 330 LGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQN 387 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 388 GNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHG 447 Query: 271 IHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDT 326 ++ + +VDW++ N FR Q PG N++ K S Y+HDT Sbjct: 448 YTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDT 507 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF R +SGCVRV DL LL+D W+ I + +K T V + + Sbjct: 508 PNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSI 566 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLD 413 PV+ Y++A+ D Q+R DIY D Sbjct: 567 PVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|83593271|ref|YP_427023.1| ErfK/YbiS/YcfS/YnhG [Rhodospirillum rubrum ATCC 11170] gi|83576185|gb|ABC22736.1| ErfK/YbiS/YcfS/YnhG [Rhodospirillum rubrum ATCC 11170] Length = 599 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 111/431 (25%), Positives = 177/431 (41%), Gaps = 19/431 (4%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD--MGIDSDIPIISK 72 F+ L + + S ++ I D N A D + + + P + Sbjct: 168 FLLFATDRLLGQSRRALPFSERLALLAREEGVIPEDLLANAGAAPDFGLFLATLAPPTPQ 227 Query: 73 ETIAQTEKAIAFYQDILSRGGWPE--LPIRPLHLGNSSVSVQRLRERLIISGDLDPS--- 127 + + YQ + GGWP + G+ + +R RL G + S Sbjct: 228 --YDLLRQGLVRYQALARDGGWPTDLADGASIKPGDRDPRLPEMRRRLAAEGLVVGSDPT 285 Query: 128 ---KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + D ++ AV++FQ HGL G++ TL MN RI Q++V L R + Sbjct: 286 FIGPPDAELLDDFLVEAVRIFQAAHGLSADGVIGRGTLVDMNTTPAQRITQIRVALERWR 345 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L +G ++LVN+P L E L V VGR D +TP+ + + FNPYW Sbjct: 346 LLPRA-LGQTHLLVNVPQYQLYLNEGRTTVLSMRVAVGRQDFETPLFSDTLRYMEFNPYW 404 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHM----IDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 +P SI Q +++ ++ YL + ++ V E VDW + ++ RQ Sbjct: 405 NVPISIAQAEVIPKQIENSAYLAKKGFTVLPRGVEGWDDGVGHESVDWKADAARSYRLRQ 464 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 DPG N + + K F + Y+HDT +F+ R + GCVRV+ L ++L+ Sbjct: 465 DPGPANPLGTVKFMFPNEYAVYLHDTNSRGVFDRSARAVSHGCVRVQEPALLANYILERF 524 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 T V+L +P+H VYI+AW + + F DIY D + Sbjct: 525 -TDRIGKTAADFSGPTPKVVRLNRPLPIHLVYITAWGGEGGKVAFVRDIYAKDRAIRQAL 583 Query: 421 PLPEDHPIDSD 431 P D+D Sbjct: 584 HDTAASP-DAD 593 >gi|323190745|gb|EFZ76014.1| putative peptidoglycan binding domain protein [Escherichia coli RN587/1] Length = 615 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 191/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPVVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP+YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPRYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 LMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|114332479|ref|YP_748701.1| peptidoglycan binding domain-containing protein [Nitrosomonas eutropha C91] gi|114309493|gb|ABI60736.1| Peptidoglycan-binding domain 1 protein [Nitrosomonas eutropha C91] Length = 561 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 110/416 (26%), Positives = 202/416 (48%), Gaps = 21/416 (5%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFD----NFLARVDMGIDSDIPIISKET-- 74 L + +H+ L + + I +FD A ++ + + Sbjct: 145 TRSLLALAHDLHSGRLTASLADPDWHIPQQQFDPVTFLQQALTSGKLEQAFADLPPDIPQ 204 Query: 75 IAQTEKAIAFYQDILSRGG-WPELPIRP--LHLGNSSVSVQRLRERLIIS------GDLD 125 ++ + ++ +++ W +P + S+ ++R+R+ + + Sbjct: 205 YRSLKQLLNKFRTLVAADTIWTRIPEETSLIRPHTRHTSIPQVRQRIQEAYHIFEKPEYG 264 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S +D +E AVK FQ +HGL+ G++ +T AMN+ ++QL++ L R++ Sbjct: 265 IVVSDSEFYDDQLEIAVKAFQRQHGLNADGIIGKNTRRAMNITPGEHVQQLRITLERLRW 324 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L + +G RY+LVNI +L AV+ L ++VGR R TP +S+I ++ NPYW Sbjct: 325 LPRK-LGDRYILVNIAGFNLVAVQENVRVLDMKIVVGRDYRSTPSFNSKITHLVLNPYWN 383 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPP-NFIFRQDP 302 +P SI +KD++ R +P Y I + + E+ + +DW+S +I RQDP Sbjct: 384 VPASIARKDLLPKQRYNPDYFASEGIRVFSDYKYESELNPDFIDWHSTSRSLPYILRQDP 443 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ + K F + + Y+HDTP LF +R +SGC+R+ + L ++L + Sbjct: 444 GRRNALGTIKFMFPNPFSIYLHDTPSKYLFQKDIRTFSSGCIRLEKPLQLAEFVLGQS-- 501 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + + I E + + KT V L ++PV+ +Y++AWS + + F D+YG D + Sbjct: 502 FEQADIAEKISSGKTQTVHLPEKIPVYLLYLTAWSDEQGEVYFSSDVYGRDKRALA 557 >gi|311280161|ref|YP_003942392.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308749356|gb|ADO49108.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 602 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 124/444 (27%), Positives = 194/444 (43%), Gaps = 39/444 (8%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL ++L S ++ S++N + + I P + Sbjct: 164 YLHFISNIALQGNRWLYSDKPYGMSTPPLSVINQWQLALDNGSLPRFIAGLAPQHPQ--Y 221 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +A+ + WP++ L+ G S V LRE L +G LD Sbjct: 222 AAMHQALLAL--VTDSRPWPQMASSGKLNPGQWSKDVPALREILQRTGMLDNTPNIALPG 279 Query: 126 ----------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + +D + AVK FQ GL G++ ST +A+NV Sbjct: 280 DSGAVSPSAAPVKKVKAASSAPAVYDRQLVEAVKRFQASQGLGADGVIGQSTRDALNVSS 339 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 R L +N+ R++ L + ++VNIPA SL +NG L S VIVGR DR+TP Sbjct: 340 AQRAGVLALNIQRLRLLPGKL--STGIMVNIPAYSLVYYQNGSQVLASRVIVGRPDRKTP 397 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVD 287 ++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ + VD Sbjct: 398 MMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVLRGWNSKETINPYHVD 457 Query: 288 WNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W++ P N FR Q PG N++ K S Y+HDTP LF R +SGCVR Sbjct: 458 WSTITPSNLPFRFQQAPGAKNSLGRYKFNMPSSEAIYLHDTPNHNLFQKDTRALSSGCVR 517 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V +L LL+D W+ I + +K T V + +PV+ Y++A+ D Q+ Sbjct: 518 VNKAPELASMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGPDGRTQY 576 Query: 406 RDDIYGLDNVH-VGIIPLPEDHPI 428 R DIY D + G LP+ + Sbjct: 577 RTDIYNYDLMARSGAQILPKAEQL 600 >gi|323976688|gb|EGB71776.1| ykud domain-containing protein [Escherichia coli TW10509] Length = 615 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 118/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S + LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDIPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A++ + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTAETAETKAMDQQTTSRSKPAPAVRAAYNNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|320196581|gb|EFW71204.1| L,D-transpeptidase YcbB [Escherichia coli WV_060327] Length = 611 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 156 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 213 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 214 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 271 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A++ + AVK FQ GL Sbjct: 272 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPVVRAAYENELVEAVKRFQTWQGLG 331 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 332 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 389 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 390 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 449 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 450 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 509 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 510 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 568 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 569 NLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|51244920|ref|YP_064804.1| hypothetical protein DP1068 [Desulfotalea psychrophila LSv54] gi|50875957|emb|CAG35797.1| hypothetical protein DP1068 [Desulfotalea psychrophila LSv54] Length = 561 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 112/377 (29%), Positives = 187/377 (49%), Gaps = 13/377 (3%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQ 112 +D + P + A+A+Y++ G WP++ + LH G+ + Sbjct: 186 LATRDLDRFLAGLPPQH--LHYKALKTALAYYRNFAKNGDWPKVAMGVNLHPGDREKRII 243 Query: 113 RLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 +R+RL +G + S +D +E AV FQ HGL G++ +T++A+N+ + Sbjct: 244 SIRKRLQFAGPFLEAPRDSDLSQYDLILEEAVLSFQQLHGLQTDGIIGRNTVDALNISIA 303 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 +I +++N+MR + +G RY+LVNI + +L+A + V L +IVG + +TP+ Sbjct: 304 EKIEIIRLNMMRWRWQ-AHDLGKRYLLVNIASFNLKAFRDQDVVLDMPIIVGTEENETPV 362 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVD 287 + I I FNP+W IP SI + +M+ LR++ YL D I + + E+ +D Sbjct: 363 FSAWIKYIDFNPFWNIPTSIARNEMLPALRKNNYYLIDQRISLFSNWQQSAVELDSTAID 422 Query: 288 WNSPEPPN---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 W + P + RQDPG +NA+ K F + + YMHDTP LF+ R + GC+ Sbjct: 423 WEAITPSEISAYKLRQDPGPLNALGRIKFIFPNSYSVYMHDTPGRHLFSLSKRSFSHGCI 482 Query: 345 RVRNIIDLDVWLLKDT-PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 RV + + L ++LL++ W I+E+ + + + L V VH Y +AW K I Sbjct: 483 RVSDPLSLAIFLLENQTDGWDTEKIKEIYEQEERKVIILTLSVAVHITYGTAWVDKGGEI 542 Query: 404 QFRDDIYGLDNVHVGII 420 F DIY D + Sbjct: 543 HFSRDIYLRDERLRNAL 559 >gi|82777551|ref|YP_403900.1| hypothetical protein SDY_2332 [Shigella dysenteriae Sd197] gi|81241699|gb|ABB62409.1| putative amidase [Shigella dysenteriae Sd197] Length = 615 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTHWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWKVPPTLARKDILPKVRNDPGYLEIHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|121592583|ref|YP_984479.1| peptidoglycan-binding domain-containing protein [Acidovorax sp. JS42] gi|120604663|gb|ABM40403.1| Peptidoglycan-binding domain 1 protein [Acidovorax sp. JS42] Length = 533 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 118/423 (27%), Positives = 177/423 (41%), Gaps = 20/423 (4%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIA 83 L I + L+E + S + R A D I +A Sbjct: 100 LHGGRIDPARLNERYDHSRRPQPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLA 159 Query: 84 FYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPS-------KGLSV 132 Y+ + + W P LP R L G + L ERL+ GDL P Sbjct: 160 QYRAMGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPA 219 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 + + AV FQ RHGL+ G++ ++TL A+NVP R Q+ + + R++ + G Sbjct: 220 QYAPALVEAVTAFQRRHGLEADGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQ-G 278 Query: 193 LRYVLVNIPAASLEAVENG----KVGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIP 247 R + VN+P L A E + L VIVG+ D +TP+ + I F+PYW IP Sbjct: 279 PRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTPLFDEDMQSIEFSPYWNIP 338 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + +++ LR+DP YL + + G + RQ PG +NA Sbjct: 339 PSIARGEIVPRLRRDPGYLARQGMEFVSAAGVSTDATPEMLGAVLAGQARIRQRPGPLNA 398 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K + +N Y+H T P LF R + GCVRV + L ++L+D PTW+ Sbjct: 399 LGDIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVEEPVALAQFVLQDDPTWTVER 458 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 I + K V+L VPV +I+ D F D+YG D ++ P Sbjct: 459 IRAAMAQPKPVFVRLPHPVPVIITHITVVVQ-DGRPHFYGDLYGHDRKLASLLRQHSAKP 517 Query: 428 IDS 430 D+ Sbjct: 518 YDA 520 >gi|146302694|ref|YP_001197285.1| hypothetical protein Fjoh_4967 [Flavobacterium johnsoniae UW101] gi|146157112|gb|ABQ07966.1| hypothetical lipoprotein [Flavobacterium johnsoniae UW101] Length = 523 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 109/421 (25%), Positives = 192/421 (45%), Gaps = 29/421 (6%) Query: 6 KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 K+N L +Y + S+ E + D+ + + D Sbjct: 125 KVNTDLMITNLYFYYAEKVY-RGFDEKTSISLEWLLPRKKLNYQVFSDSIFEKSTINDDK 183 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIIS 121 + S+ + A+ Y++I GGW + + L LG+SS V ++RERL I+ Sbjct: 184 KSKMFSQ--YYKLRDALKRYREIEKNGGWKTIEIDDAYKSLKLGDSSPIVSQIRERLFIT 241 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D+ S D+ + +K +++ HG P + + +N+PV RI+ + VN+ Sbjct: 242 QDIKEDNK-SAVCDSTLIKGLKSYELHHGFAPKNTILPEHITDLNIPVSDRIKTIIVNME 300 Query: 182 RIKKL-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + + + + G +Y+ VNIP L + + ++ S V+VG+ +T I ++ I+F Sbjct: 301 RCRWIDPKLEKGQQYIEVNIPEFKLYLIRDRQIAFTSPVVVGKAMTKTVIFSGTMSNIVF 360 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 +PYW +P SII K++ + ++ YL N+ WN N RQ Sbjct: 361 SPYWNVPPSIIAKEIKPGMAKNKNYLAQKNLE---------------WN-----NGAVRQ 400 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PGK N++ K F + +N Y+HDTP LF R + GCVRV +L + +LK+ Sbjct: 401 LPGKNNSLGLVKFLFPNSSNIYLHDTPSKSLFERESRAFSHGCVRVAKPRELAIEILKED 460 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 P W+ I++ + K + + + PV+ Y +AW ++ + F DIY D + ++ Sbjct: 461 PKWTEARIDKAMHAGKESWYTIKKKFPVYIGYFTAWVDREGNLNFYKDIYQRDESLLKLL 520 Query: 421 P 421 Sbjct: 521 T 521 >gi|300022492|ref|YP_003755103.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524313|gb|ADJ22782.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 452 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 201/388 (51%), Gaps = 7/388 (1%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 D+I + + P S I AI YQ I+ GGWP Sbjct: 45 DQIQGSLSGGSAEPAPERKKEPLQDLRPDSTPWRSDAMINAISAAIERYQSIVDSGGWPV 104 Query: 97 LPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKG--LSVAFDAYVESAVKLFQMRHGLDP 153 +P + G V LR+RL ISGD+ S FD+ +E VK FQ RHG+ Sbjct: 105 VPTGRMMRSGEDDPRVPILRKRLRISGDMPAKGSYYDSETFDSELEEGVKRFQRRHGIRI 164 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +G ++ S +N R+ QL++NL R++ L+ + RYVLVN+PA LEAV+ +V Sbjct: 165 TGRIEQSVYPVLNTTAAERLAQLKLNLQRVQALM-HGIEDRYVLVNVPAFQLEAVDKYEV 223 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 LR VIVGR RQTP + + I + F PYW +P S+ D++ L+Q+P YL D I + Sbjct: 224 QLRHRVIVGRPQRQTPDVRAMIKALNFFPYWRVPDSVATLDLVPRLKQEPGYLADEGIRV 283 Query: 274 IDE-KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + G E+ VDW++P+ ++ F+QDPG NA+ +I+ + YMHDTP LF Sbjct: 284 YNGVNGPELNPATVDWSAPQVASYKFKQDPGDKNALGLLRIDMSNEFGVYMHDTPMKNLF 343 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-YHIEEVVKTRKTTPVKLATEVPVHFV 391 R ++GCVRV+N+ DL W+ + P W + + + + + +KL +PV+F Sbjct: 344 GQQSRPFSAGCVRVQNVFDLGDWIAHNEPGWEQPGRVRDTLAAGQPMELKLMHPIPVYFA 403 Query: 392 YISAWSPK-DSIIQFRDDIYGLDNVHVG 418 Y +AW+ + ++FR DIYG D + Sbjct: 404 YFTAWAEPSNGRVEFRPDIYGRDGAALQ 431 >gi|218688768|ref|YP_002396980.1| hypothetical protein ECED1_0955 [Escherichia coli ED1a] gi|218426332|emb|CAR07157.1| putative exported enzyme [Escherichia coli ED1a] Length = 615 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 118/445 (26%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS--- 131 A +++ + WP+L + L G S V LRE L +G LD ++ Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGSKITLPG 275 Query: 132 ---------------------------------------VAFDAYVESAVKLFQMRHGLD 152 A++ + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPVPVVRAAYENELVEAVKRFQTWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|309787798|ref|ZP_07682408.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1617] gi|308924197|gb|EFP69694.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1617] Length = 610 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 155 YLHFIANIPVKGTHWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 212 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 213 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 270 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 271 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 330 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 331 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 388 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 389 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWKVPPTLARKDILPKVRNDPGYLEIHGYT 448 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 449 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 508 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 509 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 567 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 568 NLYYLTAFVGADGRTQYRTDIYNYD 592 >gi|183598377|ref|ZP_02959870.1| hypothetical protein PROSTU_01769 [Providencia stuartii ATCC 25827] gi|188020553|gb|EDU58593.1| hypothetical protein PROSTU_01769 [Providencia stuartii ATCC 25827] Length = 575 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 123/427 (28%), Positives = 182/427 (42%), Gaps = 30/427 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETI 75 YL G+S + I + D R++ + P S Sbjct: 143 YLQYLSGVSANGQFWLYRKQPYKIAAPTAEQMKPWLDAAAENRLNEWVKLQSPQHS--LY 200 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-- 133 + + Q + G + + L G SS V LRE L G LD + + Sbjct: 201 QPMREEMLK-QLKMDDDGLALVDTKTLKPGQSSDDVIALREILYRQGLLDETAINTELDA 259 Query: 134 ----------------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 + + AVK FQ R+GL+ GMV T +N+ + + Sbjct: 260 AAPDAEIAKATAQARLYSDELVEAVKKFQQRYGLEADGMVGKGTKVWLNMKPQQKAGLMA 319 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N+ R++ + E +LVNIPA SL N +V L S VIVGR DR+TPI+ S +N Sbjct: 320 LNIQRLRIIPEN--NGTGILVNIPAFSLNFFLNDEVILDSKVIVGRPDRKTPIMSSALNN 377 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP- 293 ++ NP W +P S+ +KD+ +QDP Y + G+ E+ ++W+ P Sbjct: 378 VVINPPWSVPTSMARKDIAPRGKQDPSYFSRKGYTVYSGWGEDSFEIDPYSINWDVITPA 437 Query: 294 -PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ PG N++ K S + Y+HDTP LFN R +SGCVRV +L Sbjct: 438 NFPYRIRQAPGPTNSLGRYKFNMPSSDAIYLHDTPNHSLFNRSARAISSGCVRVNKASEL 497 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL D W + I+ VK T V + +PV+ Y +AW K+ Q+R DIY Sbjct: 498 ASILLGDA-GWEQKRIDGAVKAGSTRYVNIPDRIPVYLYYQTAWVDKEQQPQYRADIYQY 556 Query: 413 DNVHVGI 419 DN Sbjct: 557 DNSINNA 563 >gi|157146384|ref|YP_001453703.1| hypothetical protein CKO_02143 [Citrobacter koseri ATCC BAA-895] gi|157083589|gb|ABV13267.1| hypothetical protein CKO_02143 [Citrobacter koseri ATCC BAA-895] Length = 620 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 189/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + S P + Sbjct: 165 YLHFIANIPVKGTRWLYSDKPYALATPPLSVINQWQIALDNGQLTTFVASLAPQHPQ--Y 222 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLD--------- 125 A ++ + WP+L L G S V LRE L +G L+ Sbjct: 223 AALHDSLKKL--VSDARPWPQLTSTATLRPGQWSNDVPALREILQRTGMLEGGPKIALPG 280 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 281 DDVAADVVVSPSAVAVEPAAVKPVARQSTQRSQPAPAVRAAYDRELVDAVKRFQTWQGLG 340 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G V +T E +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 341 ADGAVGPATREWLNVTPAQRAGVLALNIQRLRLLPGEL--STGIMVNIPAYSLVYYQNGN 398 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + Sbjct: 399 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYT 458 Query: 273 MIDEKGK--EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ P N FR Q PG N++ K S + Y+HDTP Sbjct: 459 VMRGWNSKETINPWQVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPN 518 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV +L LL+D W+ I + +K T V + +PV Sbjct: 519 HNLFQKDTRALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPV 577 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 578 NLYYLTAFVGADGRTQYRTDIYNYD 602 >gi|326795030|ref|YP_004312850.1| ErfK/YbiS/YcfS/YnhG family protein [Marinomonas mediterranea MMB-1] gi|326545794|gb|ADZ91014.1| ErfK/YbiS/YcfS/YnhG family protein [Marinomonas mediterranea MMB-1] Length = 562 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 98/426 (23%), Positives = 199/426 (46%), Gaps = 17/426 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESY---HSIVNDRFDNFLARVDMGIDSDIPIISKET 74 +I + LS + + ++ + + D + + + +P+++ Sbjct: 140 VIATIALSSYAHDLSNGRYEPLLIDPNWQLDAPSEDWKNILWLSSATDMVNSLPLLAPRH 199 Query: 75 --IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDL--DPSKG 129 +K + +YQ++ + ++ + PL LG+ V +LR RLI GD+ K Sbjct: 200 PHYQILQKWLVYYQELADKEPDIKVNVGVPLTLGDEGPRVAQLRARLIQLGDIRFSTRKV 259 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 FD ++ A+ FQ RH L G S T++ +N+P+ R++Q+ NL R + L + Sbjct: 260 NEDQFDERLKDALINFQRRHHLTADGAAGSKTIQTLNIPLKERVKQINYNLERWRWLPSR 319 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 R + V++ + NG+ V++G+ R+TP+ + ++ ++ NP W +P Sbjct: 320 LEADR-IWVDLTDYKVHTHLNGETQ-SMRVVIGKPARKTPVFYGKMTYMVTNPTWRVPHR 377 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPN--FIFRQDPGK 304 I +++++ ++++P YL + + K++ ++W + + + F Q+ Sbjct: 378 IARENLLPKIKENPDYLAKHGYKVFANWSASAKQLDPTTINWKAIDQSKLSYRFEQNADD 437 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F ++N+ Y+HDTP LF V R +SGCVR+ + + LL+ + S Sbjct: 438 GNALGLYKFMFPNKNDIYLHDTPAKHLFKEVDRAYSSGCVRLEHPDEFAELLLEGS--DS 495 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 + E + + +T + L +PV+ VY + + + +FR+D+Y D + + Sbjct: 496 EDKMNEAMNSGETKVITLPQYLPVYLVYFTVVPNDNGMPEFRNDVYKRDKLMEEAMGYAP 555 Query: 425 DHPIDS 430 P DS Sbjct: 556 FSPSDS 561 >gi|91227204|ref|ZP_01261663.1| putative amidase [Vibrio alginolyticus 12G01] gi|91188732|gb|EAS75020.1| putative amidase [Vibrio alginolyticus 12G01] Length = 513 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 173/397 (43%), Gaps = 35/397 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIV-NDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LS++ I L + + + +D F + + + P + +A Sbjct: 143 TLSVLSNEITVGKLGQFLASLRSPLQTDDAFYSAYSSLSEHSQYQYPAYQQTGLA----- 197 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 +G+ + L ER+ I G D+ ++ +D +E Sbjct: 198 ---------------------RVGDILENRPLLIERMEIVGVDVSYLDLVTEEYDEQLEL 236 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A+K FQ HGL G++ +T+ +N R+ L +N R + +++ V VN+ Sbjct: 237 AIKEFQRIHGLKEDGVIGPNTIRWINFSPQERLHLLALNSERSRIWSKER--DNVVFVNV 294 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P +I+ KD++ ++ Sbjct: 295 PGYEVTYWHDGQPLFESKVVVGRASRKTPIMSVALDSVILNPTWNVPWTIMVKDIIPKVK 354 Query: 261 QDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL ++NI +I + + ++W + P + RQ G NA+ K Sbjct: 355 RNPMYLINHNIQIIRSWTSNEIIDPTTINWATVNPRTFPYRMRQASGLQNALGLYKFNMP 414 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LF R +SGCVRV + L L K R + R Sbjct: 415 NPQAIYLHDTPSKNLFEQDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKKRESSRRS 474 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 475 NTSVPLGERIQVHIIYQTAWL-EEGTLYYRDDIYKYD 510 >gi|240141625|ref|YP_002966105.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens AM1] gi|240011602|gb|ACS42828.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens AM1] Length = 586 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 136/355 (38%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 +P + +T T +A YQ GGW LP G+S ++ LR L ++GDL Sbjct: 127 LPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHAAIPSLRHHLTLTGDLP 186 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R+ Sbjct: 187 ADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQRLMG 246 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP W Sbjct: 247 -SNFGFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNLNPTWT 305 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD G Sbjct: 306 VPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDSGLD 365 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--- 362 N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 366 NSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEGPNG 425 Query: 363 ----WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 426 PGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|304310214|ref|YP_003809812.1| hypothetical protein HDN1F_05650 [gamma proteobacterium HdN1] gi|301795947|emb|CBL44148.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 560 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 107/382 (28%), Positives = 179/382 (46%), Gaps = 12/382 (3%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLH 103 S+V F+ D + P + A+A Y+++ + LP + L Sbjct: 172 SLVKQAFNGI--SPDQAFRNARPKF--VLYDHLKNALAHYRELAAHRKGISLPSLPKSLK 227 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ + L + L GD + + + + + VK FQ HGL G++ ST Sbjct: 228 PGDTWSGIPALADGLRYLGDFTGAPPKNNRYTHDLVAGVKHFQGGHGLGVDGIIGQSTWS 287 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV--GLRSTVIV 221 A++VP +R+RQ+++++ R++ L EQ R ++VNIP L A L V+V Sbjct: 288 ALSVPFSVRVRQIELSMERMRWLSEQMADERAIVVNIPQFQLWAFPGKTQASSLSMNVVV 347 Query: 222 GRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 G+ TPIL + + ++FNPYW +P SI +K+M+ LR++P+YL N+ M+ G+ Sbjct: 348 GKSVGNSTPILLNDVKSVVFNPYWNVPSSITRKEMLPKLRENPEYLVSQNLEMV-GNGEV 406 Query: 281 VF--VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + + + RQ PG NA+ K EF + + YMHDTP F+ R Sbjct: 407 IATAPTPEQIEAISKGIYRLRQRPGPGNALGRVKFEFPNSDAIYMHDTPNRGAFSRSRRD 466 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GC+R+ + + +LL P W + + E +K+ + V L VPV Y +A Sbjct: 467 FSHGCIRLSDPEKMADFLLTGQPGWDKKRVSEAMKSDERRTVTLRNPVPVLIFYTTAMVD 526 Query: 399 KDSIIQFRDDIYGLDNVHVGII 420 +DIYG D+ + Sbjct: 527 STGRTVLLEDIYGYDSQLERAL 548 >gi|254564132|ref|YP_003071227.1| peptidoglycan-binding protein [Methylobacterium extorquens DM4] gi|254271410|emb|CAX27423.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens DM4] Length = 586 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 136/355 (38%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 +P + +T T +A YQ GGW LP G+S ++ LR L ++GDL Sbjct: 127 LPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHAAIPSLRHHLTLTGDLP 186 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R+ Sbjct: 187 ADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQRLMG 246 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP W Sbjct: 247 -SSFGFGERYVTVNIPSATVEAVENGTVTRRYVAVVGSPDKQTPAVETRITDVNLNPTWT 305 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD G Sbjct: 306 VPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDSGLD 365 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--- 362 N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 366 NSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEGPNG 425 Query: 363 ----WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 426 PGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|333001241|gb|EGK20809.1| putative peptidoglycan binding domain protein [Shigella flexneri VA-6] Length = 615 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPIKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLLYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|24112334|ref|NP_706844.1| hypothetical protein SF0922 [Shigella flexneri 2a str. 301] gi|24051196|gb|AAN42551.1| putative amidase [Shigella flexneri 2a str. 301] gi|332759013|gb|EGJ89323.1| putative peptidoglycan binding domain protein [Shigella flexneri 4343-70] gi|332760103|gb|EGJ90401.1| putative peptidoglycan binding domain protein [Shigella flexneri 2747-71] gi|332767712|gb|EGJ97903.1| L,D-transpeptidase YcbB [Shigella flexneri 2930-71] gi|333006182|gb|EGK25691.1| putative peptidoglycan binding domain protein [Shigella flexneri K-218] Length = 615 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPIKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLLYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + EVDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|113866566|ref|YP_725055.1| hypothetical protein H16_A0537 [Ralstonia eutropha H16] gi|113525342|emb|CAJ91687.1| Uncharacterized protein conserved in bacteria [Ralstonia eutropha H16] Length = 530 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 115/417 (27%), Positives = 185/417 (44%), Gaps = 23/417 (5%) Query: 30 PIHASVLD-EIINESYHSIVNDRFDNF--------LARVDMGIDSDIPIISKETIAQTEK 80 +H ++ ++ ++ FD R+ I P + Sbjct: 105 DLHGGRVNPRAVHANFAPQAERPFDAAIWLRDAVRQQRLPDAIRQAAPTFP--LYGTLRE 162 Query: 81 AIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 A+A Y++I + W P LP L G L RL+ GDL + ++ Sbjct: 163 ALARYREIAKQPAWGQPLPPLPASKLTPGQPWAGAAALAARLVALGDLPAGTQVPARYEG 222 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + VK FQ RHGL+ G++ ++TL +N+P+ R+RQ+++ + R++ G R + Sbjct: 223 TLVDGVKAFQSRHGLEADGVIGAATLAQLNLPIASRVRQIELTMERLRWTPLD--GPRMI 280 Query: 197 LVNIPAASLEAVE----NGKVGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSII 251 +VN+P L A E + L VIVG+ D +TP+ + I F+PYW IP SI Sbjct: 281 VVNVPEFMLRAYEIRDGKLDIKLEMKVIVGKALDTRTPLFEEDMRYIEFSPYWNIPPSIA 340 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV-EEVDWNSPEPPNFIFRQDPGKINAMAS 310 +++ + LR+DP Y + + GK V E + + RQ PG +NA+ Sbjct: 341 RRETVPHLRRDPAYFNRQGLEFVTGDGKAVTTLSEENLEAVLNGRMRIRQRPGPLNALGD 400 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F + N Y+H TP P LF R + GC+RV + L ++L D P W+ I E Sbjct: 401 IKFVFPNNENIYLHHTPSPQLFKRGRRDFSHGCIRVEAPVALAQFVLHDMPDWNETRIRE 460 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + K+ V+L +PV Y + + D + F DIYG D + + P Sbjct: 461 AMTRGKSNTVRLQQPLPVVLAYGTVIARADGRVSFLPDIYGHDKLLEKALRQRNGRP 517 >gi|56477065|ref|YP_158654.1| hypothetical protein ebA2890 [Aromatoleum aromaticum EbN1] gi|56313108|emb|CAI07753.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 543 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 110/431 (25%), Positives = 189/431 (43%), Gaps = 26/431 (6%) Query: 18 LILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLA--------RVDMGIDSDIP 68 + L + + +D ++ ++ + D FD R+ + P Sbjct: 100 IALTAAMQRYLTDLRFGRVDPRQVHANFVAPAADGFDPVTYLYAAVLERRLPDAVRRVAP 159 Query: 69 IISKETIAQTEKAIAFYQDILSRG----GW----PELPIRPLHLGNSSVSVQRLRERLII 120 ++ A +A+ Y+ + W P P R L G + + L +RL+ Sbjct: 160 VLP--LYANVREALRRYRILARDPSGIAPWLAALPRPPQRKLEPGQAYAGMPVLMQRLVA 217 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 GDL + + + ++ + VK FQ RHGL G+V +TLE ++V R+RQ+++ L Sbjct: 218 LGDLPAATPVPLRYEGALVEGVKAFQRRHGLAEDGVVGKATLEQLDVSPVARVRQIELTL 277 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVE--NG--KVGLRSTVIVGRV-DRQTPILHSRI 235 R++ + G R ++VN+P L A E +G +V VIVG D +TP+ + Sbjct: 278 ERLRWTPLLQ-GPRMIVVNVPEFVLRAYEARDGRVEVKTAMKVIVGSALDTRTPLFDEDM 336 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV-EEVDWNSPEPP 294 I F+PYW +P SI + + + LR+D YL+ + G+ + ++ Sbjct: 337 RFIEFSPYWNVPPSIARAETIPKLRRDAAYLRQQGFEFVTGNGQVIPTFAPEYLDAVLRG 396 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 RQ PG NA+ K F + +N ++H T P LF R + GC+RV + L Sbjct: 397 EMRIRQRPGPSNALGDIKFIFPNNDNIFLHHTSTPRLFGKDRRDFSHGCIRVEEPVVLAK 456 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++L+D P WS I + + ++L +PV Y + D ++ F DIYG D Sbjct: 457 FVLQDDPEWSEERIRAAMAGGVSKTLRLREPLPVVIAYSTVLVKSDGMVYFFRDIYGHDT 516 Query: 415 VHVGIIPLPED 425 + + P Sbjct: 517 LLDAALRQPAR 527 >gi|332092543|gb|EGI97616.1| putative peptidoglycan binding domain protein [Shigella boydii 5216-82] Length = 611 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 188/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 156 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 213 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 214 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPD 271 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + VK FQ GL Sbjct: 272 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEVVKRFQAWQGLG 331 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 332 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLVYYQNGN 389 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 390 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 449 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 450 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 509 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 510 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 568 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 569 NLYYLTAFVGADGRTQYRTDIYTYD 593 >gi|30062460|ref|NP_836631.1| hypothetical protein S0986 [Shigella flexneri 2a str. 2457T] gi|30040706|gb|AAP16437.1| putative amidase [Shigella flexneri 2a str. 2457T] gi|281600285|gb|ADA73269.1| putative amidase [Shigella flexneri 2002017] gi|332762697|gb|EGJ92960.1| putative peptidoglycan binding domain protein [Shigella flexneri K-671] gi|333020100|gb|EGK39371.1| putative peptidoglycan binding domain protein [Shigella flexneri K-304] Length = 615 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPIKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLVL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLLYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + EVDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|218533110|ref|YP_002423926.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218525413|gb|ACK85998.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 586 Score = 355 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 136/355 (38%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 +P + +T T +A YQ GGW LP G+S ++ LR L ++GDL Sbjct: 127 LPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHAAIPSLRHHLTLTGDLP 186 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R+ Sbjct: 187 ADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQRLMG 246 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP W Sbjct: 247 -SSFCFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNLNPTWT 305 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD G Sbjct: 306 VPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDSGLD 365 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--- 362 N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 366 NSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEGPNG 425 Query: 363 ----WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 426 PGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|163854165|ref|YP_001642208.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665770|gb|ABY33137.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] Length = 590 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 136/355 (38%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 +P + +T T +A YQ GGW LP G+S ++ LR L ++GDL Sbjct: 131 LPSYTAQTFVDTMRAAERYQVYAEAGGWKPLPADFAPKPGDSHAAIPSLRHHLTLTGDLP 190 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R+ Sbjct: 191 ADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQRLMG 250 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP W Sbjct: 251 -SSFGFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNLNPTWT 309 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD G Sbjct: 310 VPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDSGLD 369 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--- 362 N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 370 NSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEGPNG 429 Query: 363 ----WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 430 PGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 484 >gi|313650833|gb|EFS15234.1| putative peptidoglycan binding domain protein [Shigella flexneri 2a str. 2457T] Length = 611 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 190/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 156 YLHFIANIPIKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 213 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 214 AAMHESLLVL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 271 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 272 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 331 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 332 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLLYYQNGN 389 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 390 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 449 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + EVDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 450 VMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 509 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV DL LL+D W+ I + +K T V + +PV Sbjct: 510 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPV 568 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 569 NLYYLTAFVGADDRTQYRTDIYNYD 593 >gi|295688991|ref|YP_003592684.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter segnis ATCC 21756] gi|295430894|gb|ADG10066.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter segnis ATCC 21756] Length = 468 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 108/405 (26%), Positives = 177/405 (43%), Gaps = 28/405 (6%) Query: 27 VEKPIHASVLD--------EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 + +H L + + Y + R+ + S P + Sbjct: 82 YARAVHVGRLPVSAFMTEWGLRPDPYDPAPDFAAAVQQDRLAAWLASLPPPYT--GYQTL 139 Query: 79 EKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + Y+ + ++GGW +P P L G V+ LR RL + D + S +DA Sbjct: 140 MTGLTTYRGLAAKGGWRVVPAGPSLTEGLVDPRVKALRARLAVE-DPTVALTGSDVYDAA 198 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AV+ Q R GL+P G+V TL A+NVPV+ R+ Q++ N+ R + L + R + Sbjct: 199 LVQAVQRAQKRFGLNPDGVVGPGTLNALNVPVERRVDQIEANMERWRWLPQTLPADR-IQ 257 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNI AA + + L + GR +TP+L S I+ I+ NP W +P+SI K++ Sbjct: 258 VNIAAAVMSVFQQDTPTLTMRAVTGRPGDETPMLSSMIHSIVLNPPWNVPQSIATKELWP 317 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + +P YL N+ +I +Q G A+ K +F + Sbjct: 318 KEKANPGYLARNDFIVIPTGD---------------GGSRLQQKAGPKAALGQVKFDFNN 362 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 Y+HDTP F++ R + GCVR++ I+L ++ P W+ I+ + + T Sbjct: 363 PYGVYLHDTPSRSKFDSFSRLASHGCVRLQKPIELIKLMMAGDPVWTPEKIDATLASGDT 422 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 KL ++ V +Y +A+ D + FRDD YG D V I Sbjct: 423 VRAKLPQQMAVFLLYWTAYVTPDGQVNFRDDPYGWDKELVQRIAA 467 >gi|170750306|ref|YP_001756566.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170656828|gb|ACB25883.1| Peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 595 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 130/355 (36%), Positives = 190/355 (53%), Gaps = 11/355 (3%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLD 125 P ++ T T +A Y GGW LP L G ++ LR L ++GDL Sbjct: 159 PTLTSRTFLDTLRAAERYAAFAEAGGWERLPEDLARLKPGERHPAIPALRHHLTLTGDLP 218 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + D + +A+ FQ RHGL SG++ T+ A+NVP +R RQL + R+ Sbjct: 219 ADAPPNDRLDPPLVAAIAAFQARHGLPDSGVLGRLTINALNVPAAVRQRQLAASAARLMG 278 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + G RYV+VNIP+A++EAVENG V R +VG D+ TP + +RI I FNP W Sbjct: 279 -SKFPFGERYVVVNIPSAAVEAVENGAVARRYVAVVGSPDKATPPVETRITDINFNPTWT 337 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S+++ +++ +R++P YL N+I ++ G EV +DW + N+ RQDPG Sbjct: 338 VPASVVKNEIIPQMRRNPGYLAKNHIRILSPSG-EVDPTRIDWAGEKAVNYTLRQDPGFD 396 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--- 362 N++ +I+ +R YMHDTP LF VRF + GCVRV + +L WLL+ T Sbjct: 397 NSLGQVRIDMPNRFAVYMHDTPAKSLFAASVRFHSHGCVRVGQVKELVGWLLQGTDGPNG 456 Query: 363 ----WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + +KLA +PV FVY++ ++ D FRDDIY LD Sbjct: 457 PGTSWGPIEIETGIADGERRDIKLAKPIPVTFVYLTGYATPDGKAHFRDDIYNLD 511 >gi|253990246|ref|YP_003041602.1| hypothetical protein PAU_02769 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781696|emb|CAQ84859.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 568 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 108/406 (26%), Positives = 177/406 (43%), Gaps = 15/406 (3%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETI 75 YL + + I +++ + + + + P + Sbjct: 155 YLQFVSDVGQQGQNWLYRTTPYKIVLPSPVVIDQWQQAIAGSNIVAYVTALAPQHPQ--Y 212 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-SKGLSVA 133 K + + WP+L L G SS V LRE LI G LD + Sbjct: 213 ENMRK--EMMKQLADSKPWPQLSDKGVLRPGQSSSDVTALREVLIRIGMLDELTTKSDNT 270 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + + V+ FQ GL P G++ T + +N R + +N+ R++ + Sbjct: 271 YSPELVATVRNFQQWQGLAPDGVIGKRTRDWLNTSPQDRAGLMALNIQRLRIIPGHV--S 328 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP SL+ N + L S VIVGR R+TPI+++ +N ++ NP W +P S+ +K Sbjct: 329 TGIMVNIPDYSLQYYLNEQEVLNSKVIVGRPSRKTPIMNNVLNNVVINPPWSVPTSLARK 388 Query: 254 DMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPPNFIFR--QDPGKINAM 308 D+ DP Y + + + +DWN P NF +R Q PG N++ Sbjct: 389 DIAPRGVNDPGYFQRRGYVIFSSWRADASVIDPYTIDWNVVTPANFPYRIWQAPGPTNSL 448 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K + + Y+HDTP LF+ +R +SGCVRV +L LL D W++ + Sbjct: 449 GRYKFNMPNSDAIYLHDTPNHGLFDKDIRAISSGCVRVNKASELASMLLGDA-GWNQNRV 507 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +K T V + +PV+ Y++AW + + Q+R DIY DN Sbjct: 508 SNTLKQGNTAYVNIPQRIPVYLYYLTAWVDELGVAQYRTDIYDYDN 553 >gi|311747883|ref|ZP_07721668.1| peptidoglycan binding domain-containing protein [Algoriphagus sp. PR1] gi|126575877|gb|EAZ80187.1| peptidoglycan binding domain-containing protein [Algoriphagus sp. PR1] Length = 562 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 106/429 (24%), Positives = 197/429 (45%), Gaps = 20/429 (4%) Query: 18 LILPMGLSLVEKPIHASVLD--------EIINESYHSIVNDRFD--NFLARVDMGIDSDI 67 ++ + K + + ++ + ++ + + ++ + S Sbjct: 135 FLMTDAFFRLAKDLELGKIGPESRGTYWKLEAKESNTDPLELLNSVAEGEDIEDALASLY 194 Query: 68 PIISKETIAQTEKAIAFYQDILSRGG--WPELP-IRPLHLGNSSVSVQRLRERLIISGDL 124 P + + ++ + + + R W ++ + L +G+ + SV +LRERL G L Sbjct: 195 PKL--DMYSKGREVLKTLYETSERDTLNWKQVSFEQSLKVGDRNQSVPKLRERLQFWGFL 252 Query: 125 DPSKGLSVA-FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 D + FD+ + +K +Q+ +G+ P G + T +N + I VN+ R+ Sbjct: 253 DTYETEDELLFDSTMWEGLKKYQIENGMKPDGAIGDLTAGFLNDSPEKLIDIASVNMERM 312 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L E VLVNI L+ ++ G L + VIVG+ ++P+ + ++ I+F+PY Sbjct: 313 RWLPEINWDEELVLVNIANYQLDYLDKGDTTLSAKVIVGKEYNESPVFSAPMSYIVFSPY 372 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQD 301 W IP SI Q +++ L+++ YL++ N+ ++ G+ + +V+W + F F RQ Sbjct: 373 WNIPSSITQDEILPSLKKNKAYLQEKNMEVVSNTGEVLDPNKVNWKEKDGEEFPFRIRQK 432 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K F + N Y+HDTP LF R + GC+R++ LL+D Sbjct: 433 PGGSNSLGLVKFMFPNDYNIYIHDTPARSLFQRESRALSHGCIRIQYPDQFAKSLLRD-K 491 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W+ I E + VKL EVPV +Y++ W+ FR DIY D + + Sbjct: 492 KWTTEKISEAMHQENEEVVKLNREVPVLLLYLTFWTDDKGQGHFRPDIYNRDAELLKALR 551 Query: 422 -LPEDHPID 429 P+ I+ Sbjct: 552 SAPKAESIE 560 >gi|294140649|ref|YP_003556627.1| putative peptidoglycan binding domain-containing protein [Shewanella violacea DSS12] gi|293327118|dbj|BAJ01849.1| putative peptidoglycan binding domain protein [Shewanella violacea DSS12] Length = 475 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 119/408 (29%), Positives = 200/408 (49%), Gaps = 12/408 (2%) Query: 23 GLSLVEKPIHASVLDEIINESYH-----SIVNDRFDNFLA-RVDMGIDSDIPIISKETIA 76 LSL + + +++I ++ I + + + + + S PI + Sbjct: 67 ALSLGPTKVKQARVEQIQSQLQEFWGTLGIPTNAVNMKSSQDLFQQVLSLEPI--SKDYL 124 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 T I + + R W EL L LG+S V + RL + GDL ++ FD Sbjct: 125 TTSNKIRYLLWLEQRDDWSELASNTWLKLGDSHSLVPEISSRLKVLGDLRQYDPINTLFD 184 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A V + VK FQ+RHGL G++ TL +N+ R L +N + L + R+ Sbjct: 185 ANVNNGVKRFQLRHGLTLDGIIGPETLSWINMKPVKRAELLAINFINKTGYLA-SVEPRF 243 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +++NIPA LE ++NG+V L+S VIVG+ RQTP L SRI+ ++ NP W +PRS++ +D+ Sbjct: 244 LIINIPAFELELIDNGQVALQSRVIVGKPYRQTPQLSSRISNLVINPSWRVPRSLLTRDL 303 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKI 313 + +R+D Y++ N + D G+ V +W +F +R Q PG+ N + K Sbjct: 304 LPKVREDGGYIQARNFDVFDNNGEIVSKTSQEWQDLAHGHFPYRLVQIPGEGNTLGRYKF 363 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F + ++ Y+HDT + LF R +SGC+R+ N+ L W+ + + ++ + Sbjct: 364 YFENEHSVYLHDTVDKELFEESNRALSSGCIRIENVEGLANWMASNLVRDKQTWVDMQPE 423 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 KT L +P++ VY +AW + QFR+DIY + + Sbjct: 424 RHKTQWFSLEQSLPIYLVYWTAWVDQWGNAQFRNDIYHKNPTFKLALA 471 >gi|269967085|ref|ZP_06181153.1| putative amidase [Vibrio alginolyticus 40B] gi|269828344|gb|EEZ82610.1| putative amidase [Vibrio alginolyticus 40B] Length = 477 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 173/397 (43%), Gaps = 35/397 (8%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIV-NDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LS++ I L + + + +D F + + + P + +A Sbjct: 107 TLSVLSNEITVGKLGQFLASLRSPLQTDDAFYSAYSSLSEHSQYQYPAYQQTGLA----- 161 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVES 140 +G+ + L ER+ I G D+ ++ +D +E Sbjct: 162 ---------------------RVGDILENRPLLIERMEIVGVDVSYLDLVTEEYDEQLEL 200 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A+K FQ HGL G++ +T+ +N R+ L +N R + +++ V VN+ Sbjct: 201 AIKEFQRIHGLKEDGVIGPNTIRWINFSPQERLHLLALNSERSRIWSKER--DNVVFVNV 258 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P +I+ KD++ ++ Sbjct: 259 PGYEVTYWHDGQPLFESKVVVGRASRKTPIMSVALDSVILNPTWNVPWTIMVKDIIPKVK 318 Query: 261 QDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFY 316 ++P YL ++NI +I + + ++W + P + RQ G NA+ K Sbjct: 319 RNPMYLINHNIQIIRSWTSNEIIDPTTINWATVNPRTFPYRMRQASGLQNALGLYKFNMP 378 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP LF R +SGCVRV + L L K R + R Sbjct: 379 NPQAIYLHDTPSKNLFEQDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKKRESSRRS 438 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 439 NTSVPLGERIQVHIIYQTAWL-EEGTLYYRDDIYKYD 474 >gi|319955785|ref|YP_004167048.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319418189|gb|ADV45299.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 575 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 110/421 (26%), Positives = 191/421 (45%), Gaps = 13/421 (3%) Query: 6 KINKILYCFFVYLILPM-GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID 64 ++ + +Y + + ++ E Y + A + + Sbjct: 126 RLYLNYMHYLLYGGIDWKAFDAKRAELTKKYKIKVGWEYYRPKMTPASLLVEATMSGDLR 185 Query: 65 SDIPIISKET--IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIIS 121 S + A+ +KA+ Y +I RGGW LP + + G S ++ +R+ L I Sbjct: 186 SAFAKAEPKRFKYAKLKKALERYLEIADRGGWKPLPAFKAIKPGQSHPAIPLIRQHLRIE 245 Query: 122 GDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 GDL S S +D ++ A++ +++RHGL + ++D+ T +N V +I L++NL Sbjct: 246 GDLPASASLDSDIYDETLQKAMRRYKLRHGLPGTPVIDAQTRRWLNTSVQYKIAMLRLNL 305 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 RIK + Q+ +R + +NIPA L E + V+ G+ D TP+ H+ + I+ Sbjct: 306 DRIKWIWRQEAPVR-IELNIPAFRLYVYEGQHLVDTMRVVTGKPDHPTPVFHNTMKYIVV 364 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPP--- 294 NPYW IP SI++ +M+ L +DP Y + + + + ++W+ Sbjct: 365 NPYWKIPESIVRSEMLKHLVKDPYYYERRGKVLHAGWDEDSPRIDPGTINWSQYVGNNKT 424 Query: 295 -NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + F Q PG NA+ K F ++ + Y+HDTP LF R + GC+R++ +L Sbjct: 425 IPYRFMQVPGTRNALGKIKFLFPNKYSVYIHDTPSKKLFFRSTRAFSHGCMRIQKPRELL 484 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L I E + TR+ + L E+PV VY++A+ + FR DIY D Sbjct: 485 KVLALYNSNIDVEGIMEQLGTREKETISLLHEIPVDIVYLTAFVDDYGNLNFRKDIYHYD 544 Query: 414 N 414 Sbjct: 545 K 545 >gi|300722551|ref|YP_003711841.1| putative carboxypeptidase [Xenorhabdus nematophila ATCC 19061] gi|297629058|emb|CBJ89643.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus nematophila ATCC 19061] Length = 572 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 174/374 (46%), Gaps = 17/374 (4%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGN 106 +N + V I S P K + + + W E L L LG Sbjct: 188 WQQHINN--SNVLSYIMSLSPNHP--MYENMRK--EMLEQLSDKQPWTEFLLKSTLRLGQ 241 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 S+ ++ L + L+ SG LDPS S ++ + +AVK FQ HGL G++ ST Sbjct: 242 SNENMAALEKILVRSGVLDPSVTNSDNKVYNKALVAAVKRFQTLHGLAADGVIGQSTKTW 301 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 +N +R R + +N+ R++ + + VNIP SL+ NGK L S V+VGR Sbjct: 302 LNTAPQIRARIMALNIQRLRIIPGDIP--TGIFVNIPNYSLDYYLNGKEVLNSKVVVGRP 359 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEV 281 R+TPI+ S +N ++ NP W +P S+ +KD+ +DP Y + + K + Sbjct: 360 SRKTPIMSSELNNVVINPPWNVPTSMTRKDIAPRAMRDPGYFRTRGYTVFSSWSNDAKVI 419 Query: 282 FVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 ++W P NF RQ PG N++ K + + Y+HDTP FN +R Sbjct: 420 DSSSINWGVVTPGNFPYRIRQAPGPTNSLGRFKFNMPNSDAIYLHDTPNQTAFNREMRAI 479 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGCVRV +L LL D W + + +KT T V + ++PV Y +AW K Sbjct: 480 SSGCVRVNKAPELADMLLGDA-GWDKSKVNNSLKTWATKYVSIPKKIPVFLYYQTAWVDK 538 Query: 400 DSIIQFRDDIYGLD 413 I Q+R DIY D Sbjct: 539 KGIPQYRADIYDYD 552 >gi|213027433|ref|ZP_03341880.1| hypothetical protein Salmonelentericaenterica_35663 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 410 Score = 352 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 115/408 (28%), Positives = 178/408 (43%), Gaps = 53/408 (12%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS 110 + ++ M + S P + A A+ + WP+L L G S Sbjct: 3 YALEEGQLPMFVASLAPQHPQ--YAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSND 58 Query: 111 VQRLRERLIISGDLDP-----------------------------------------SKG 129 V LRE L +G LD Sbjct: 59 VPALREILQRTGMLDGGPKIALPGDNTSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAP 118 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 119 AARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAE 178 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 179 L--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 236 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG Sbjct: 237 LARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAH 296 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 297 NSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWND 355 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 356 ARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 403 >gi|94967237|ref|YP_589285.1| peptidoglycan binding domain-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94549287|gb|ABF39211.1| Peptidoglycan-binding domain 1 [Candidatus Koribacter versatilis Ellin345] Length = 625 Score = 352 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 176/393 (44%), Gaps = 13/393 (3%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL--SRGGWPELPIRPLH 103 + V+ + + P + T+ + Y ++ G +P + L Sbjct: 236 PQFLTQRLVNGQNVEAELAAVQPQFA--GYKATQAWLQRYIELARQDNGEQLPVPTKALD 293 Query: 104 LGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + RL L + GDL + A + AVK +Q RHGL G + + T Sbjct: 294 PGKPYAGIPRLTSLLHLLGDLPADAVVPAGDVYQAPLVDAVKRYQSRHGLTADGRLGAQT 353 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVI 220 ++ +N P+ R+ QL++ L R + L ++ V+VNIP L A + N KV L V+ Sbjct: 354 VKELNTPLSTRVEQLRLTLERWRWLPQE-FPQPPVVVNIPEFRLRAYDANHKVVLSMNVV 412 Query: 221 VGRVDRQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 VG+ R TP+ + ++F PYW +P SI + +++ +++D Y+ N + + G+ Sbjct: 413 VGKALRHETPVFDDEMKYVVFRPYWNVPPSIQRSEIVPAIQRDRDYISKKNYEVTTQAGQ 472 Query: 280 EVFVEEVD---WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 V + RQ PG NA+ K+ F ++ N Y+H TP LF+ Sbjct: 473 VVTSGTISDEVLQQLRAGKLAVRQKPGPTNALGLVKLIFPNQYNVYLHSTPSQQLFSQAR 532 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-KTTPVKLATEVPVHFVYISA 395 R + GC+RV +L W L+D P W+ + ++ V L+ VPV +Y +A Sbjct: 533 RDFSHGCIRVEKPAELSAWALQDKPEWTVERVRAAMQKGPDNVQVNLSKPVPVLILYGTA 592 Query: 396 WSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 + +D + F DD+YG D + +P+ Sbjct: 593 VAEEDGSVHFFDDLYGYDADLEKALARGYPYPL 625 >gi|222109387|ref|YP_002551651.1| erfk/ybis/ycfs/ynhg family protein [Acidovorax ebreus TPSY] gi|221728831|gb|ACM31651.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax ebreus TPSY] Length = 533 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 117/423 (27%), Positives = 175/423 (41%), Gaps = 20/423 (4%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIA 83 L I + L+E + S + R A D I +A Sbjct: 100 LHGGRIDPARLNERYDHSRRPQPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLA 159 Query: 84 FYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPS-------KGLSV 132 Y+ + + W P LP R L G + L ERL+ GDL P Sbjct: 160 HYRALGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPA 219 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 + + A FQ RHGL+ G++ ++TL A+NVP R Q+ + + R++ + G Sbjct: 220 QYTPVLVEAATAFQRRHGLEADGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQ-G 278 Query: 193 LRYVLVNIPAASLEAVENG----KVGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIP 247 R + VN+P L A E + L VIVG+ D +TP+ + I F+PYW IP Sbjct: 279 PRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTPLFDEDMQSIEFSPYWNIP 338 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + + LR+DP YL + + G + RQ PG +NA Sbjct: 339 PSIARGETVPRLRRDPGYLARQGMEFVSAAGVSTDTTPEMLGAVVAGQARIRQRPGPLNA 398 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K + +N Y+H T P LF R + GCVRV + L ++L+D PTW+ Sbjct: 399 LGDIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVGEPVALAQFVLQDDPTWTVER 458 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 I + K V+L VPV +I+ D F D+YG D ++ P Sbjct: 459 IRAAMAQPKPVFVRLPHPVPVIITHITVVVQ-DGRPHFYGDLYGHDRKLASLLRQHSAKP 517 Query: 428 IDS 430 D+ Sbjct: 518 YDA 520 >gi|217970214|ref|YP_002355448.1| ErfK/YbiS/YcfS/YnhG family protein [Thauera sp. MZ1T] gi|217507541|gb|ACK54552.1| ErfK/YbiS/YcfS/YnhG family protein [Thauera sp. MZ1T] Length = 549 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 107/387 (27%), Positives = 175/387 (45%), Gaps = 6/387 (1%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 Y + +D+ P + + Q L+ G WP++ P Sbjct: 164 RPYERAAELARVLQAPDLAAAVDAYAPDLP--LYRALRAELLAQQGRLAVGDWPKVAAGP 221 Query: 102 -LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G SS V LR RL +G+ +D + AVK FQ HGL G++ + Sbjct: 222 TLKPGASSSRVASLRARLAAAGERVSEARDKSHYDEALVEAVKRFQAAHGLQADGVLGAQ 281 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 TLEA+N R+ Q++ NL R++ + G R +LV+I + V +G+ S VI Sbjct: 282 TLEALNASPAQRVAQIRANLERLRWVASDLQGDR-LLVDIVGYHADLVLDGQPVWSSRVI 340 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ R+TP L + ++ NP WV+P +I+++D++ ++P YL + + ++D G+ Sbjct: 341 VGKPKRRTPSLLDSVTHLVLNPKWVVPPTILREDVIPGAARNPSYLANRRLRVVDRSGQT 400 Query: 281 VFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V +DW+ + Q G ++ K + Y+HDT LF R Sbjct: 401 VDPATIDWSGARQSGFPYRVEQQSGADGSLGRIKFSLSNPYVIYLHDTNARSLFKRAERA 460 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV +L V LL D+ WS ++ + + +T V + +V V Y +A Sbjct: 461 LSSGCVRVEKPEELAVLLLADSGRWSAQALQAALDSGRTRTVDVGRDVKVLLHYATAALD 520 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPLPED 425 + + R+DIYG D V + P Sbjct: 521 EAGRVLLRNDIYGYDAAIVAALDAPAP 547 >gi|152995955|ref|YP_001340790.1| peptidoglycan-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150836879|gb|ABR70855.1| Peptidoglycan-binding domain 1 protein [Marinomonas sp. MWYL1] Length = 556 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 102/426 (23%), Positives = 197/426 (46%), Gaps = 17/426 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESY---HSIVNDRFDNFLARVDMGIDSDIPIISKET 74 +I + L+ + + + + + N+ D + + +P+++ + Sbjct: 134 VISTIALTSYAHDLSNGRYEPQLIDPNWQLDAPNNNWKDLLYLNSATDMVNSLPLLAPRS 193 Query: 75 --IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDL--DPSKG 129 +K + +YQD+ ++ + PL G+ V +LR RL+ GD+ K Sbjct: 194 PQYQVLQKWLVYYQDLAAKEKDIFVSAGVPLSAGDEGPRVAQLRARLVQLGDIRFSTRKV 253 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 FD ++ A+ FQ RH + G S T++ +NVP+ R +Q+ NL R + L + Sbjct: 254 NEEQFDIRLKEALIRFQQRHHITADGAAGSKTIQMLNVPLKTRAKQIAYNLERWRWLPSE 313 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + + V++ +++ NG++ ++G+ DR+TP+ + ++ NP W +P Sbjct: 314 -LEANRIWVDLTNYTVDMYLNGELT-SMKAVIGKPDRKTPVFKGLMTYMVTNPTWRVPHR 371 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGK 304 I +++++ L+ DP YL + + KE+ +++W + FR Q P + Sbjct: 372 IARENLLPKLQADPNYLVKHGYKVYSSWSIGAKELDSTKINWKAINEDKLAFRFEQKPDE 431 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F ++N Y+HDTP LF R +SGCVR+ N + + K + ++ Sbjct: 432 GNALGQFKFMFPNKNEIYLHDTPAKHLFREEDRAFSSGCVRLENPTEFAKEITKGSKQFN 491 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 + +KT T + L T +PV+ VY + + +++FR+DIY D + + Sbjct: 492 --DMNNSLKTGSNTVITLPTYIPVYLVYFTVVPNANGMLEFRNDIYERDALMEEAMGYSA 549 Query: 425 DHPIDS 430 P DS Sbjct: 550 FGPRDS 555 >gi|120434782|ref|YP_860468.1| peptidoglycan binding domain-containing protein [Gramella forsetii KT0803] gi|117576932|emb|CAL65401.1| protein containing peptidoglycan binding-like domain [Gramella forsetii KT0803] Length = 543 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 112/402 (27%), Positives = 196/402 (48%), Gaps = 10/402 (2%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLA--RVDMGIDSDIPIISKETI 75 L + L + + + EI ++ + ++ + +DS P Sbjct: 136 YLRLAKDLATGKLDPTKIHEIWGTPLNTIDAEKVLEKAISEGNIHKSLDSLKPDH--LVY 193 Query: 76 AQTEKAIAFYQ-DILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDP-SKGLSV 132 Q + A+ ++ + + G ++ L G++S + + +RL G + S + Sbjct: 194 HQLKSALNKFKKNGIEEGPTTKISTGKLIRPGDNSDRMPSIAKRLSELGYFNGISDSTNT 253 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 ++ ++ AVK FQ+ H L ++ S+T+ +N+ R Q+ VNL R + + +G Sbjct: 254 IYNEDIQKAVKEFQLDHDLQEDALLGSTTISNLNLTRRDRYHQILVNLERWRWYPK-NLG 312 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 Y++VNIP L ++ ++VG R+TPI I I++NP W IP +I + Sbjct: 313 KHYIIVNIPDYELSVIKEEDTIRTHKIMVGTEVRKTPIFSDEIGYIIYNPTWTIPPTIKK 372 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 D++ ++D Y + NI + D +G +V VDWNS + + +RQ G N + K Sbjct: 373 NDVIPGAKKDIGYFQKKNIKIYDSEGTDVDPASVDWNSSKARGYTYRQPAGPTNPLGIVK 432 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 I + + Y+HDTP LF R ++SGCVRV++ + L +LL D ++ IEE++ Sbjct: 433 IIYPNEYLIYLHDTPSRSLFEKNARAQSSGCVRVQDALGLAKYLLSDQDSYDDEKIEEIL 492 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 K+ KTT + + +V VH Y + + KD I+F DDIY LD Sbjct: 493 KSGKTTQITVKQKVKVHHFYWTVYQKKD-AIKFIDDIYNLDQ 533 >gi|330013904|ref|ZP_08307828.1| peptidoglycan binding domain protein [Klebsiella sp. MS 92-3] gi|328533309|gb|EGF60058.1| peptidoglycan binding domain protein [Klebsiella sp. MS 92-3] Length = 389 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 109/378 (28%), Positives = 172/378 (45%), Gaps = 31/378 (8%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERL 118 I P + +++ + WP++ L G S + LRE L Sbjct: 1 PAFIAGLAPRHPQ--YEAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDIGALREIL 56 Query: 119 IISGDLDPSK-------------------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +G L+ S +D + VK FQ GL G++ Sbjct: 57 QRTGMLENSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQ 116 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 ST + +NV R L +N+ R++ L + ++VNIPA SL ++G L S V Sbjct: 117 STRDWLNVSSAQRAGVLALNIQRLRLLPGKL--STGIMVNIPAFSLVYYQDGSQVLASRV 174 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 IVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R +P YL+ + ++ Sbjct: 175 IVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNS 234 Query: 280 --EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 + VDW++ N FR Q PG N++ K S + Y+HDTP LF Sbjct: 235 KETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKD 294 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 VR +SGCVRV +L LL+D W+ I + +K T V + +PV+ Y++A Sbjct: 295 VRALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTA 353 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D Q+R DIY D Sbjct: 354 FVDADGRTQYRTDIYNYD 371 >gi|171056700|ref|YP_001789049.1| peptidoglycan-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170774145|gb|ACB32284.1| Peptidoglycan-binding domain 1 protein [Leptothrix cholodnii SP-6] Length = 516 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 105/379 (27%), Positives = 167/379 (44%), Gaps = 14/379 (3%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQR 113 R+ + P + Q +A+A Y+ + W P L R L + + Sbjct: 142 RLPQAVREAAPRLP--LYEQLRQALAQYRALGEHPAWAQKLPPLRGRKLEPLQAWDGLPL 199 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 L RL + GDL + V + + +AV+ FQ RHGL G+V +TL A+ V R Sbjct: 200 LAGRLQVLGDLPADVPVPVRHEGALVAAVQAFQRRHGLGDDGVVGRATLAALAVTPAQRA 259 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK----VGLRSTVIVGRV-DRQT 228 RQ+ + L R++ Q +G R ++VN+P L A E V L VIVG+ D T Sbjct: 260 RQIALTLERLRWTPLQ-LGPRMIVVNVPEFVLRAYETRDDRIDVRLEMKVIVGKALDTPT 318 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVD 287 P+ + I F+PYW +PRSI +++ L+ +P Y + G+ + Sbjct: 319 PLFTEEMRFIEFSPYWNVPRSIAGAELVPRLQSEPAYFTRQGFEFVGRDGRVSAGFGDEQ 378 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 ++ RQ PG NA+ K F + + Y+H TP P LF R + GC+RV+ Sbjct: 379 LDAVLRGELRIRQRPGPNNALGDIKFVFPNNDAIYLHHTPSPGLFERDRRDFSHGCIRVQ 438 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + L ++L+D P W I E + ++ ++L VPV Y + + F Sbjct: 439 EPVALAKFVLQDQPGWDEARIVEAMARGQSRTLRLDRPVPVLIAYGTVLV-RQGRPHFLA 497 Query: 408 DIYGLDNVHVGIIPLPEDH 426 D+YG D + + Sbjct: 498 DVYGNDQLLDEALRKRRRR 516 >gi|326797793|ref|YP_004315612.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] gi|326548557|gb|ADZ76942.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] Length = 548 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 98/358 (27%), Positives = 173/358 (48%), Gaps = 21/358 (5%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISG 122 S P+ + Q + Y+++ ++ W + + +G+SS +++++ RL + G Sbjct: 205 SIEPVYRQ--YEQLRGYLKKYRELAAKHKWNPIIADKKSYKIGDSSTVLRQIKTRLFLLG 262 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 D L+ +D+ + S V+ FQ RHGL P G + S T+ +NV R++Q+ VN+ R Sbjct: 263 DYQGD-TLTNLYDSTLFSGVRSFQSRHGLRPDGAIGSGTINELNVLPAARLKQIAVNMER 321 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + L + Y+ VNIP L + V+VG+ +T I H + ++F+P Sbjct: 322 SRWLPV-SLKTDYLAVNIPEFKLHVYHADSLLWSCNVVVGKAMHKTVIFHGDVKYVVFSP 380 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 YW +P SI++ +++ +R+D Y+ +N+ + + G RQ P Sbjct: 381 YWNVPPSIVKNEILPGMRRDRNYIAKHNMEITGKSG---------------GLPNVRQKP 425 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K F + N Y+HD+P L+N R + GC+RV L +LL+ T Sbjct: 426 GPKNSLGLVKFLFPNSYNIYLHDSPAKSLYNESSRAFSHGCIRVSEPEKLANFLLRSDST 485 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 W++ I + + K V L VPV Y +A+ ++ I FR DIY D+ ++ Sbjct: 486 WNKESIYKAMHAGKEKYVTLKKTVPVFIAYFTAFIDREGKINFRKDIYDRDDRLAKML 543 >gi|317047572|ref|YP_004115220.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] gi|316949189|gb|ADU68664.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] Length = 602 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 113/427 (26%), Positives = 174/427 (40%), Gaps = 68/427 (15%) Query: 47 IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLG 105 + + +R + S P + A A+ + WP+L L G Sbjct: 168 QWQNAVNGGGSR--AFVLSLEPQHPQ--YAPMHAALKTL--LNDNRPWPQLRDSGTLKPG 221 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSV--------------------------------- 132 S V LRE L +G L Sbjct: 222 QISNDVPALREILQRTGMLSGHSATPTPADDAVPVAPVPVSQSAQPVAVSPSAASVNDLS 281 Query: 133 --------------------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +D + VK FQ GL G + T E +NV +R Sbjct: 282 AQAPQAPGNVAANPVQSANNVYDNALVEGVKRFQHWQGLADDGAIGPRTREWLNVSPQMR 341 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 L +N+ R++ L + ++VNIP SL NG L S VIVGR DR+TP++ Sbjct: 342 AALLALNIQRLRLLPDDMHNG--IMVNIPNYSLTYYNNGATILSSRVIVGRPDRKTPLMR 399 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWN 289 S +N ++ NP W +P S++++D++ ++QDP YL + ++ + + +DWN Sbjct: 400 SALNNVVLNPPWNVPTSLVRQDIVPKVKQDPGYLYKHGYTLLSGWSADAQVIDPSSLDWN 459 Query: 290 SPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + RQ PG +N++ K S + Y+HDTP LF +R +SGCVRV Sbjct: 460 MVSAASFPYRIRQAPGAMNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVN 519 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 +L LL+D W+ I + +K T V + +PV+ Y++AW D Q+R Sbjct: 520 KASELADLLLQDA-GWNDSRISDTLKEGNTRYVPIRHRIPVNLYYLTAWVADDGQPQYRT 578 Query: 408 DIYGLDN 414 DIY DN Sbjct: 579 DIYNYDN 585 >gi|254472994|ref|ZP_05086392.1| peptidoglycan-binding domain 1 [Pseudovibrio sp. JE062] gi|211957715|gb|EEA92917.1| peptidoglycan-binding domain 1 [Pseudovibrio sp. JE062] Length = 550 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 109/413 (26%), Positives = 181/413 (43%), Gaps = 17/413 (4%) Query: 19 ILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-ETIA 76 IL + + E I + +AR Sbjct: 146 ILKYAEDAQAGRVSPYAISEDITLRPERPDPIEAL-TSVARSAAPAQVLAAFNPPHAEYK 204 Query: 77 QTEKAIAFYQDILSRGGWPE---LPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +K +A ++ G + +P L +G+ S V LRERL + + Sbjct: 205 ALKKQLAELREQTHNGDLEKQVVIPAGKLLKVGSKSSRVALLRERLSV----PTVESQMN 260 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD-LRIRQLQVNLMRIKKLLEQKM 191 + + AV+ FQ +GL P G V TL A+N V I+ + N+ R + + + + Sbjct: 261 VYTQDLAYAVEAFQAANGLHPDGAVGPRTLLALNGRVSGDPIKDVIANMERWRWMP-RDL 319 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++ VNIP + G V + V+VG+ +TP+ ++ ++ NPYW +P SI Sbjct: 320 GETHLRVNIPEFMVRLNMEGFVLYETRVVVGKRSNKTPVFSDKMQHVVVNPYWNVPYSIA 379 Query: 252 QKDMMALLRQD--PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 K+++ LR YL+ N ++ GK V V+W++ RQ PG+ NA+ Sbjct: 380 SKELLPELRASNPQSYLQKGNYEIVYG-GKIVDPRRVNWDAVTFKQIRIRQRPGRGNALG 438 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F +++N Y+HDTP LFN R + GCVRV+N + L+ T + +I Sbjct: 439 KIKFMFPNKHNVYLHDTPSKSLFNRSERAFSHGCVRVQNPFEFSDALMATQDTITGNYIR 498 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +V ++T V L ++PVH Y +A+ + +Q R DIYG + + + L Sbjct: 499 SLVGKKQTQ-VNLQKDIPVHISYFTAFVDEAGKLQRRPDIYGHNQAVIDALNL 550 >gi|261344276|ref|ZP_05971920.1| putative peptidoglycan binding domain protein [Providencia rustigianii DSM 4541] gi|282567879|gb|EFB73414.1| putative peptidoglycan binding domain protein [Providencia rustigianii DSM 4541] Length = 575 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 115/422 (27%), Positives = 182/422 (43%), Gaps = 30/422 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETI 75 YL + + + I S + D R+ + + P + Sbjct: 143 YLQYLAAIDTNGQYWLYTSRPYKIIAPTTSQMKPWLDAISEHRLAEWVKAQAPKHT--MY 200 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS-------- 127 K + + + L G +S V LRE L+ G LD S Sbjct: 201 QPMRKEMLKQLTLPEDTLEIT-STKALKPGQASDDVITLREILVRDGLLDASVIGEAIDA 259 Query: 128 ----------KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 + ++ + AVK FQ+++GL+ G++ T +N+ + + Sbjct: 260 SAPPEEIAKVTANARVYNDELVEAVKKFQLQYGLEADGVIGRGTRVWLNMQPKQKAGLMA 319 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N+ R++ + E +LVNIPA +L+ N ++ L S VIVGR DR+TPI+ S +N Sbjct: 320 LNIQRLRIVPESS--GTGILVNIPAYTLDFYLNNEIILDSKVIVGRADRKTPIMSSALNN 377 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP- 293 ++ NP W +P S+ +KD+ + DP Y + G+ EV +DW + P Sbjct: 378 VVINPPWSVPTSLARKDIAPKGKVDPSYFSRKGYTVYSGWGQDAYEVDPYSIDWENMSPA 437 Query: 294 -PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ PG N++ K S + Y+HDTP LFN R +SGCVRV +L Sbjct: 438 NFPYRIRQAPGPTNSLGRYKFNMPSSDAIYLHDTPNHSLFNKNARAISSGCVRVNKASEL 497 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL D W++ I+ +K T V + +PV+ Y +AW KD Q+R DIY Sbjct: 498 ATILLGDA-GWAQTRIDGALKDGSTRYVNIPDRIPVYLYYQTAWVDKDQQPQYRADIYQY 556 Query: 413 DN 414 D Sbjct: 557 DG 558 >gi|110804934|ref|YP_688454.1| hypothetical protein SFV_0927 [Shigella flexneri 5 str. 8401] gi|110614482|gb|ABF03149.1| putative amidase [Shigella flexneri 5 str. 8401] Length = 615 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 120/445 (26%), Positives = 188/445 (42%), Gaps = 55/445 (12%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPIKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLLYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + EVDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +S CVRV DL LL+D W+ I + K T V + +PV Sbjct: 514 HNLFKRDTRALSSDCVRVNKASDLANMLLQDA-GWNDKRISDARKQGDTRYVNIRQSIPV 572 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 573 NLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|330830685|ref|YP_004393637.1| cell wall degradation protein [Aeromonas veronii B565] gi|328805821|gb|AEB51020.1| Cell wall degradation protein [Aeromonas veronii B565] Length = 494 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 123/376 (32%), Positives = 176/376 (46%), Gaps = 10/376 (2%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 + +V D+ + + S P ++ + + WP L + Sbjct: 120 DLNRPVVTQPSDD---DLLTQVKSLRPQVA--EYEAVRAKVHKLLAMPMASKWPTLDMPT 174 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G SS + ++R L GD +D E A+K FQ RHGL G++ T Sbjct: 175 LRAGESSAELGQIRAMLNELGD-SAPSHGDQIYDGDTEQAIKQFQRRHGLTADGIIGRQT 233 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 +N +R L NL R + L++Q G RYVLVNIP L VE+G S VIV Sbjct: 234 RSWLNTGPQVRASLLLRNLWR-RDLVDQLAGGRYVLVNIPDYRLSVVESGNEVFTSRVIV 292 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G+ R TPIL S I I+ NP W +PRSI+ KD++ L +DP YL +ID +G V Sbjct: 293 GKEQRATPILASEIRSIVLNPSWHVPRSILSKDILPKLGRDPAYLSREQFEVIDSEGNPV 352 Query: 282 FVEEVDWNS--PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 E W+ + RQ PG NA+ K + + Y+H TP LF R Sbjct: 353 QFTEEGWHQALAAGFPYRLRQKPGDHNALGRYKFYLPNNDAIYLHSTPRKALFEQGARAF 412 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+RV + DL LL D+ + + ++K +T + L T +PV VY S+W + Sbjct: 413 SSGCIRVEHADDLAELLLADS-RYQPDKVANILKESQTKWLPLTTPIPVFTVYWSSWIDE 471 Query: 400 DSIIQFRDDIYGLDNV 415 + Q R+DIYG D V Sbjct: 472 NGRQQLRNDIYGFDRV 487 >gi|291326407|ref|ZP_06124362.2| putative peptidoglycan binding domain protein [Providencia rettgeri DSM 1131] gi|291314414|gb|EFE54867.1| putative peptidoglycan binding domain protein [Providencia rettgeri DSM 1131] Length = 583 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 118/438 (26%), Positives = 182/438 (41%), Gaps = 46/438 (10%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLAR-VDMGIDSDIPIISKETI 75 YL + + + I + + D + + + S P Sbjct: 135 YLQYLSSVEASGQYWLYTNRPYKIIAPTTAQMKPWLDAVESNNLSSWVKSQAPNHP--MY 192 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---------- 125 K + + + + L LG SS V LR+ L G L+ Sbjct: 193 LPMRKEMLKLLAMPEDNL-EIVGTKALKLGQSSDDVVMLRQILQREGLLEGGNVTEEVAP 251 Query: 126 ------------------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 P+ +S +D + AVK FQ+++GL+ G+V T Sbjct: 252 PETMAQVAELAVEQTVEPTEPSDAPASTVSKVYDQELVDAVKKFQLQYGLEADGVVGKGT 311 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 +N+ + + +N+ R++ + +LVNIP SL+ N +V L S VIV Sbjct: 312 RVWLNMQPKQKAGLMALNIQRLRIIPASS--GTGILVNIPGYSLDFYLNDEVILDSKVIV 369 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--- 278 GR DR+TPI+ S +N ++ NP W +P S+ +KD+ +QDP Y + G Sbjct: 370 GRADRKTPIMSSALNNVVINPPWSVPTSMARKDIAPKGKQDPSYFSRKGYTVYSGWGADS 429 Query: 279 KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 E+ +DW++ P + RQ PG N++ K S + Y+HDTP LFN Sbjct: 430 YEINPYAIDWDNITPANFPYRIRQAPGPTNSLGRYKFNMPSSDAIYLHDTPNHSLFNRNA 489 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGCVRV +L LL D W + I+ +K T V + +PV Y +AW Sbjct: 490 RAISSGCVRVNKASELASILLGDA-GWEQKRIDGALKEGSTRYVNIPDRIPVFLYYQTAW 548 Query: 397 SPKDSIIQFRDDIYGLDN 414 KD Q+R DIY DN Sbjct: 549 VDKDQQPQYRADIYQYDN 566 >gi|212709809|ref|ZP_03317937.1| hypothetical protein PROVALCAL_00857 [Providencia alcalifaciens DSM 30120] gi|212687620|gb|EEB47148.1| hypothetical protein PROVALCAL_00857 [Providencia alcalifaciens DSM 30120] Length = 575 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 112/422 (26%), Positives = 178/422 (42%), Gaps = 30/422 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETI 75 YL + + + I + D R+ + + P + Sbjct: 143 YLQYLSSVESSGQYWLYTSRPYKIIAPTTPQIKPWLDAASEHRLGEWVKAQAPKHA--MY 200 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-- 133 K + + + L G +S V LRE L+ G L+ S Sbjct: 201 QPMRKEMLKQLALPEDTLEIT-STKTLKPGQASDDVITLREILVRDGLLEASAVSETVDA 259 Query: 134 ----------------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 + + AVK FQ+++GL+ G++ T +N+ + + Sbjct: 260 SAPPEEINKVTANARVYSDDLVEAVKKFQLQYGLEADGVIGKGTRVWLNMQPKQKAGLMA 319 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N+ R++ + E +LVNIPA +L+ N + L S VIVGR DR+TPI+ S +N Sbjct: 320 LNIQRLRIVPESS--GTGILVNIPAYTLDFYLNNDIILDSKVIVGRADRKTPIMSSALNN 377 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP- 293 ++ NP W +P S+ +KD+ + DP Y + G+ E+ +DW + P Sbjct: 378 VVINPPWSVPTSLARKDIAPKGKMDPSYFSRKGYTVYSGWGQDAYEIDPYTIDWENITPA 437 Query: 294 -PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ PG N++ K S + Y+HDTP LFN R +SGCVRV +L Sbjct: 438 NFPYHIRQAPGSSNSLGRYKFNMPSSDAIYLHDTPNHSLFNKNARAISSGCVRVNKASEL 497 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL D W++ I+ +K T V + +PV+ Y +AW KD Q+R DIY Sbjct: 498 ATILLGDA-GWAQTRIDGALKEGSTRYVNIPDRIPVYLYYQTAWVDKDQQPQYRADIYQY 556 Query: 413 DN 414 D Sbjct: 557 DG 558 >gi|117619072|ref|YP_855763.1| cell wall degradation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560479|gb|ABK37427.1| cell wall degradation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 433 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 170/363 (46%), Gaps = 7/363 (1%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 + + P ++ + + + WP L + L G S + ++ Sbjct: 69 AGDNLLEQVRQLRPQVA--EYDAVREEVRKLLALPMAKKWPTLTMPTLRAGEVSPELGQI 126 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 R L GD P +DA AVK FQ RHGL G++ T +N ++R Sbjct: 127 RSILNELGDTAPR-HDDATYDAETLQAVKQFQRRHGLTADGIIGRQTRSWLNTGPEVRAS 185 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 L NL R + L++Q G RYVLVNIP L VE+G S VIVG+ R TPIL S Sbjct: 186 LLLRNLWR-RDLVDQLSGARYVLVNIPDYRLSVVESGNEVFTSRVIVGKEQRATPILASE 244 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS--PE 292 I I+ NP W +PRSI+ KD++ L +DP YL +ID +G V E W Sbjct: 245 IRSIVLNPAWHVPRSILSKDILPKLGRDPAYLNREQFEVIDGEGNPVQFTEEGWQQALAS 304 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ PG NA+ K + Y+H TP LF R +SGC+RV + DL Sbjct: 305 GFPYRLRQKPGDHNALGRYKFYLPNNEAIYLHSTPRKALFEQGARAFSSGCIRVEHADDL 364 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL D+ + + ++K +T + L T +PV VY S+W +D Q R+DIYG Sbjct: 365 AELLLADS-RYQPDKVASILKETQTKWLPLTTPIPVFTVYWSSWIDEDGRQQLRNDIYGF 423 Query: 413 DNV 415 D V Sbjct: 424 DRV 426 >gi|298293068|ref|YP_003695007.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296929579|gb|ADH90388.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 678 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 104/411 (25%), Positives = 178/411 (43%), Gaps = 16/411 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--I 75 +L + + + + + ++ + L + + + Sbjct: 262 TVLTYARHVQSGRFDPKTISKDV-DPSPTVPDPAAVLALVSGSPNPRAAFDSFAPQYDEY 320 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + +A ++P P L G+S V LR RL I G + Sbjct: 321 KLLKVELAKLMAEGRGVTQVQVPAGPMLRPGDSDPRVPLLRARLGIGG-----APEDTEY 375 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D+++ AV+ FQ GL P G+V TL A+N ++ + N+ R + + ++ Sbjct: 376 DSFLADAVRDFQKLSGLKPDGVVGRGTLAALNGAGGDQMPDIIANMERWRWVP-HQVAPV 434 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 YV+VNIP + V N + + V+VG+ D QTP++ + +FNP W +P SII+ + Sbjct: 435 YVMVNIPEFMVRVVVNEQTVHETRVVVGKPDTQTPLMSENMQYAVFNPSWNVPPSIIRNE 494 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 M+ L DP L+ I ++ G+ V +DW+ + FRQ+PG+ NA+ K Sbjct: 495 MLPKLMADPYALERQGIDVV-RNGRIVDPGAIDWSR-GATGYSFRQEPGERNALGRMKFM 552 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEV 371 F +++ Y+HDTP LF R + GCVRV + L WS+ I ++ Sbjct: 553 FPNKHAVYLHDTPSRSLFARERRAFSHGCVRVHEPLAFAEALFALGLPNEGWSQPRIAKL 612 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V V L PVH VY + + + + R+D+YG++ I+ L Sbjct: 613 V-GGNEKSVTLKRRFPVHLVYFNTFVDGNGRLVSREDLYGINGATKAILGL 662 >gi|126174124|ref|YP_001050273.1| peptidoglycan binding domain-containing protein [Shewanella baltica OS155] gi|125997329|gb|ABN61404.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS155] Length = 521 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 110/404 (27%), Positives = 183/404 (45%), Gaps = 6/404 (1%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET-IAQTEKAI 82 L+L + A+ + + +D+ +I + + K + Sbjct: 115 LTLSPNTLSAADMAR-VQADVTGYWRYIKTFAQCNNGAPVDTVSAVIPTDLHYQRVLKQV 173 Query: 83 AFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A + + W L L +G S V + +RL + GDL ++ + + Sbjct: 174 AHLVQLDATEPWETLVLDEKLTVGMSHPFVDTIAKRLWLLGDLAIEPTTNLVYSEELVVG 233 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ RHGL G++ TL +N R L N +R + E+K+ Y+L+N+P Sbjct: 234 VKRFQQRHGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVF-ERKLEPSYLLINVP 292 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R+ Sbjct: 293 AFEMILVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRR 352 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + YL + + D G+ V +W + + Q PG NA+ K F + Sbjct: 353 NGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNALGKYKFHFDNSF 412 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 + Y+H T EP LFN R +SGC+R+ + +L W + R + V + Sbjct: 413 SVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLVPDVTEPQW 472 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 L+ ++PVH VY +AW Q+R DIY L+ +P Sbjct: 473 FSLSQKLPVHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVPAT 516 >gi|300022478|ref|YP_003755089.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524299|gb|ADJ22768.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 423 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 137/359 (38%), Positives = 208/359 (57%), Gaps = 14/359 (3%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP--------LHLGNSSVSVQRLRERLII 120 +SK IA T+ AI Y +I+++GGWP+LP P L G + +V LR+RL Sbjct: 60 TLSKANIAATKTAIQRYTNIVAQGGWPQLPEPPNKTPRDSLLQYGTTDAAVALLRQRLAT 119 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 SGDL S FD+ V+ A+K FQ +GL P+G+ D T+ A+NVP D R++QL+ N+ Sbjct: 120 SGDLTGGNISSTYFDSDVDKALKRFQASNGLTPTGIADKRTIVALNVPADARLKQLKANV 179 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R+++ + G +YV+VNIPAA +EAV+NG++ R +VG+ DR TP+LH+ I + F Sbjct: 180 SRLEEFTAK-AGKKYVVVNIPAAQVEAVQNGQIVARYAAVVGKADRPTPLLHTPITDLSF 238 Query: 241 NPYWVIPRSIIQKDMMALLR----QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 NP W +P ++I +D++ R + L +I GK+V +++W++ +P + Sbjct: 239 NPVWRLPPTVISEDLIPRGREMQSKGQNVLLKFHIDAY-SNGKKVDPAKINWSTVKPGTY 297 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 + Q PGK N + KI F S ++ YMHDTP +F R +SGC+RV NI +L WL Sbjct: 298 TYSQQPGKENPLGFLKINFDSAHSVYMHDTPSDRIFGRNYRSASSGCIRVHNIENLAAWL 357 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L + W I + + ++L V + FVYISAW+ D I+QFR D+Y D + Sbjct: 358 LAEQRGWDSERIASMKANGERLDLRLKKPVQLLFVYISAWATPDGIVQFRRDLYQKDGI 416 >gi|256422945|ref|YP_003123598.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256037853|gb|ACU61397.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 534 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 168/351 (47%), Gaps = 20/351 (5%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPEL---PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 ++ A K++ Y DI + W + + G+S+ + +++RL +G+ K Sbjct: 196 QSYAALHKSLQRYVDIAEKNSWDTIRIEKKKRYKKGDSTAVIAWVKKRLQATGEYS-DKD 254 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 S F+ +E+AV F+ HG P G++ + L MN+P ++++ +NL R+ Sbjct: 255 TSTVFNDALETAVTAFEATHGHTPKGVITDTLLREMNMPAIKLVQRILINLERMHWAPAN 314 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 G R +LVNIP L K V+VG+ + T + ++++I+F+PYW +P S Sbjct: 315 PEG-RLILVNIPEFGLHVWNGSKKEFDMPVVVGKEGKSTTMFSGKLDQIVFSPYWNLPNS 373 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I++++++ L ++ Y+ N+ + I RQ PGK N + Sbjct: 374 IVKEEILPALARNKNYISSKNMEI---------------TGERNGLPIVRQKPGKDNPLG 418 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + N Y HDT + LF+ R + GC+R+ + + + +LL D WS I+ Sbjct: 419 QVKFLFPNSFNIYFHDTNQKYLFDRDQRAFSHGCIRLGDPVKMANYLLADNQNWSAERID 478 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + K V++ VPV Y +AW + +QFR+DIY D G + Sbjct: 479 SAMNSGKEKYVRVKDPVPVLITYYTAWVDEAGKLQFREDIYDHDTYMAGKL 529 >gi|16125758|ref|NP_420322.1| peptidoglycan binding domain-containing protein [Caulobacter crescentus CB15] gi|221234516|ref|YP_002516952.1| cell wall degradation protein [Caulobacter crescentus NA1000] gi|13422888|gb|AAK23490.1| peptidoglycan binding domain protein [Caulobacter crescentus CB15] gi|220963688|gb|ACL95044.1| cell wall degradation protein [Caulobacter crescentus NA1000] Length = 502 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 114/411 (27%), Positives = 186/411 (45%), Gaps = 23/411 (5%) Query: 16 VYLILPMGLSLVEKPIHASVLDE---IINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 V L L ++ + S + +Y R+ +++ P + Sbjct: 110 VSLTLAYARAVRTGRLPISAFKAEWGLRPAAYDPTPEFVAAVQQGRLAEWLETLPPPYT- 168 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 +A Y+DI ++GGW + P L G + V L RL D + + Sbjct: 169 -GYQALRTGLATYRDIAAKGGWLPIAAGPELKEGVTGARVVALEARLAAE-DPTVAVDAA 226 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FDA + AV+ Q R GL+P+G+VD +TL A+N+PV+ RI Q+ N+ R + L + Sbjct: 227 PVFDAALTQAVQRAQKRFGLNPNGIVDRATLAALNIPVERRIDQIVANMERWRWLPQTLP 286 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 R + VN+ AA L + L + GR +TP+L S I+ I+ NP W +P+SI Sbjct: 287 AER-IQVNVAAAILSVFHHDTPTLTMRAVTGRPGDETPMLSSMIHSIVLNPPWNVPQSIA 345 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 K++ R P YL N+ +I E +Q G + A+ Sbjct: 346 SKEIWPKERASPGYLARNDFIVIP---------------IEGGGTRLQQKAGPLAALGKV 390 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K +F + Y+HDTP F++ R + GCVR++ I+L +++D PTW+ + E Sbjct: 391 KFDFNNPYGVYLHDTPSRSRFDSFSRLASHGCVRLQKPIELVNEVMRDDPTWTPEKVNET 450 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + +T KL ++ V+ +Y +A+ D + FR D YG D V I Sbjct: 451 LASGETVRAKLPQQIAVYLLYWTAYVTPDGQVNFRQDPYGWDRDLVQRIAA 501 >gi|149278087|ref|ZP_01884226.1| cell wall degradation protein [Pedobacter sp. BAL39] gi|149231285|gb|EDM36665.1| cell wall degradation protein [Pedobacter sp. BAL39] Length = 532 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 102/405 (25%), Positives = 190/405 (46%), Gaps = 23/405 (5%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 + E + VL + D+ ++ + P+ Sbjct: 144 FFNYVSTAYEGKVDPEVL-QWHIPRKKLNTAALLDSLMSGKKTAAEDWEPV--NREYKWM 200 Query: 79 EKAIAFYQDILSRGGWPELPIRPL---HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +K + Y + G + ++ L +G+S+++V+++R RLI GD K S FD Sbjct: 201 KKRLTSYYQLQQEGKFEDISSGKLKVYRIGDSALTVRQVRLRLIQFGD-STLKDSSSVFD 259 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + + ++VK Q ++G+ +G ++ + ++A+NVP++ RI+Q+ +N+ R++ + + G RY Sbjct: 260 STLRASVKRAQGQYGMGQNGNINKALIKALNVPLEQRIKQILINMERMRWMPQMPDG-RY 318 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +L NIP L E+ K L ++VG+ +T I +++ I+F+PYW IP SI++ ++ Sbjct: 319 LLANIPEYRLHVFEDHKTVLNMGIVVGKAANKTVIFSNKMRNIVFSPYWNIPASIVRAEV 378 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + ++++ YL N+ RQ PG N++ K F Sbjct: 379 LPAMKRNRNYLASKNMEQ---------------TGFSNGLPEVRQKPGDNNSLGRVKFLF 423 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y HDTP LF R + GC+R+ L +LL W++ I + + + Sbjct: 424 PNSYDIYFHDTPAKSLFAQEKRAFSHGCIRLSQPAALAEYLLDGKSGWTKEKIAKAMSGK 483 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 K V L++ VPV Y + W +D ++ FRDD+YG D + Sbjct: 484 KEVWVALSSPVPVFITYFTCWVDEDGLLNFRDDVYGHDRKMAEQL 528 >gi|87120480|ref|ZP_01076374.1| hypothetical protein MED121_22022 [Marinomonas sp. MED121] gi|86164123|gb|EAQ65394.1| hypothetical protein MED121_22022 [Marinomonas sp. MED121] Length = 561 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 99/419 (23%), Positives = 185/419 (44%), Gaps = 23/419 (5%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESY------HSIVNDRFDNFLARVDMGIDSDIPIIS 71 +I + LS + + ++ + S ++ + + +P ++ Sbjct: 139 VISTIALSSYAHDLSIGRYEPLLIDPNWQLDAPSSQWSELL---YLNTASDMVNYLPQLA 195 Query: 72 KE--TIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDL--DP 126 +K + +YQDI ++ + PL LG+ + +LR RL+ GD+ Sbjct: 196 PRHPDYQILQKWLVYYQDISAKQKDIRVTAGVPLSLGDQGPRIAQLRARLVQLGDIRFST 255 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 FD ++ A+ FQ RH L G S T+E +N+P+ LR +Q+ NL R + L Sbjct: 256 RTIQEDKFDKKLKQALINFQRRHDLTADGHAGSQTIEMLNIPISLRAKQIAYNLERWRWL 315 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + R + V++ + + N + V++G+ +R+TP+ + ++ NP W + Sbjct: 316 PTELEAER-IWVDLTDYKVHTILNDQHS-TMKVVIGKKERKTPVFKGEMTYMVTNPTWRV 373 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QD 301 P I Q+ ++ +P YL + + KE+ +DW P N +R Q Sbjct: 374 PHRIAQESLLPKAHANPNYLIEQGYKVYSSWTIGAKELDPSLIDWRKVTPENLKYRFEQT 433 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 P + NA+ K F +RN Y+HDTP LF R +SGC+R+ L+ + Sbjct: 434 PDEGNALGLYKFMFPNRNEIYLHDTPAKHLFKESNRAFSSGCIRLEKPQLFANNLVAGSK 493 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++ +++++T V L ++PV+ VY + ++ + FR DIY D + + Sbjct: 494 Q--VEALQNAIQSKETKVVSLPKQLPVYIVYFTVVPDRNGMPGFRKDIYERDILMEEAM 550 >gi|212635582|ref|YP_002312107.1| hypothetical protein swp_2794 [Shewanella piezotolerans WP3] gi|212557066|gb|ACJ29520.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 464 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 181/352 (51%), Gaps = 4/352 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + Q + I+ + + W + + G S S+ + +RL++ GD S + Sbjct: 106 DNYLQLQNRISHLRWLAEHQQWTPIYIEGLIRPGMSHKSLLAIADRLMLLGDGVASAQSA 165 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + D + + V+ FQ RHGL+P G++ TL+ +NV R R L + ++ + + Q+ Sbjct: 166 ESLDDRLVNGVRRFQRRHGLNPDGIIGPETLKWINVDPMERARILAKSFVQKAEFMSQR- 224 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 +++++NIPA +E + GKV L S VIVG+ RQTP+L S I+ ++ NP W +P+ I+ Sbjct: 225 AEQFLVINIPAYEMELISQGKVELESRVIVGKPYRQTPLLSSAISNVVINPSWRVPKKIL 284 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMA 309 D++ +R D Y++ + D +G +V W F FR Q PG N + Sbjct: 285 FNDLLPQVRIDGNYIEQREFDVFDREGNQVVRSAQQWRDLAAGPFPFRFVQRPGVNNTLG 344 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + + Y+HDT +P LFN R +SGC+R+ N+ L W+ + + ++ Sbjct: 345 RYKFYFPNDYSVYLHDTSDPKLFNKSYRALSSGCIRIENVEGLANWMAANLVKDKQTWVD 404 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + KT L + + VH VY +AW KD++ QFR+DIY +++ P Sbjct: 405 RHIDRNKTQWFALNSTLNVHLVYWTAWIDKDNLAQFRNDIYQKQSINDASDP 456 >gi|197106129|ref|YP_002131506.1| peptidoglycan binding domain protein [Phenylobacterium zucineum HLK1] gi|196479549|gb|ACG79077.1| peptidoglycan binding domain protein [Phenylobacterium zucineum HLK1] Length = 510 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 114/414 (27%), Positives = 176/414 (42%), Gaps = 28/414 (6%) Query: 18 LILPMGLSLVEKPIHASVLD--------EIINESYHSIVNDRFDNFLARVDMGIDSDIPI 69 L GL+ + L + + Y R+ +D P Sbjct: 106 TALIEGLARYAHDLKVGRLALGDFPANWAVRPQPYDPAPELARALAEDRLKAWLDGLAPR 165 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSK 128 + + +A Y++I + GGW +P + +G++ V LR RL D + Sbjct: 166 YA--GYVALTRGLARYREIAAAGGWKTIPAGSSMAIGSTDPRVPALRARLAAE-DPQLTD 222 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 S FD ++ AV Q R GL P G+V + TL +N PV RI Q+ NL R + L Sbjct: 223 LTSPTFDPALQEAVVRAQKRFGLKPDGVVGNGTLAFLNQPVGQRILQIIANLERWRWLPA 282 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 R V VN AA + + K L + G+ +TP+L S I+ ++ NP W +P Sbjct: 283 TMPATR-VQVNSGAAIVTLFRDDKPVLSMKAVSGKPGDETPMLVSAIHSVVINPPWNVPT 341 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I +++ R+DP Y N+ ++ +G +Q PG A+ Sbjct: 342 RIANEELWPKQRRDPGYFARNDYVVLPTEG---------------GGSRVQQKPGPKAAL 386 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K +F + Y+HDTP F+ R + GCVR+ L LL P W R I Sbjct: 387 GRFKFDFDNPFTVYLHDTPSKGTFDLYARQASHGCVRLEKAQLLAEALLASDPKWGREGI 446 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 E + T KT V L+ +VPV+ +Y +A++ D + FR D Y D + + I L Sbjct: 447 EAQLATGKTLRVSLSEQVPVYILYWTAFAGADGQMHFRADPYNWDRLLLTKIGL 500 >gi|160875046|ref|YP_001554362.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS195] gi|160860568|gb|ABX49102.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS195] gi|315267278|gb|ADT94131.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS678] Length = 521 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 107/404 (26%), Positives = 180/404 (44%), Gaps = 6/404 (1%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS-KETIAQTEKAI 82 L+L + A+ + + +D+ +I + K + Sbjct: 115 LTLSPNTLSAADVAR-VQADVAGYWRYIKTFAQCNNGAPVDTVSTVIPTDAQYQRVLKQV 173 Query: 83 AFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + + W L L +G S + + +RL + GDL ++ + + Sbjct: 174 THLVQLDATEPWETLVLDEKLTVGMSHPLLDTIAKRLWLLGDLAIEPMTNLVYSEELVVG 233 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ RHGL G++ TL +N R L N +R + E+K+ Y+L+N+P Sbjct: 234 VKRFQHRHGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVF-ERKLEPSYLLINVP 292 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R+ Sbjct: 293 AFEMILVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRR 352 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + YL + + D G+ V +W + + Q PG NA+ K F + Sbjct: 353 NGHYLNERQFDVYDYNGQLVQHMPEEWQGLASTSFPYQLVQRPGAKNALGKYKFHFDNSF 412 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 + Y+H T EP LFN R +SGC+R+ + +L W + R + + Sbjct: 413 SVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLAPDVTEPQW 472 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 L+ ++PVH VY +AW Q+R DIY L+ +P Sbjct: 473 FSLSQKLPVHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVPAT 516 >gi|167624266|ref|YP_001674560.1| peptidoglycan-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354288|gb|ABZ76901.1| Peptidoglycan-binding domain 1 protein [Shewanella halifaxensis HAW-EB4] Length = 464 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 107/403 (26%), Positives = 184/403 (45%), Gaps = 8/403 (1%) Query: 22 MGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLAR----VDMGIDSDIPIISKETIAQ 77 L + + S L I +E ++ + + D I + Q Sbjct: 51 YRSLLSQHSLSPSELKPIEHEIAQFWLSRQIPIRNSSTNHLGDPFIRAMALEPELNGYLQ 110 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + I + +G W P + + S+ + +RL + GD + S S D Sbjct: 111 IQNRIRHLHWLAQQGWWQPIIIDELIRPSKKHPSIPTIAKRLWLLGDAERSATTSTLLDE 170 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + SA+K FQ RHGL P ++ T++ +NV R R L N + + + Q+ G +++ Sbjct: 171 KLSSALKRFQRRHGLQPDAIIGPETMKWLNVQPIERARMLANNFVLKAEFMAQR-GDQFL 229 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 ++NIPA + G+V L S VIVG+ R TP+L I+ ++ NP W +P+ I+ D++ Sbjct: 230 VINIPAFEMALFSKGRVELESRVIVGKPYRPTPLLSGAISNVVINPSWRVPKKILYNDLL 289 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIE 314 +R+D Y+ + N + D V W+ + P + F Q PG N + K Sbjct: 290 PHVRKDGNYIAEGNFDVFDRSNNLVVRTAQQWSDLARGPFPYRFVQRPGYNNTLGRYKFY 349 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F + + ++HDT P LF R +SGC+RV N+ L W+ + + ++ + Sbjct: 350 FPNDFSIFLHDTSNPKLFERSNRALSSGCIRVENVEGLANWMAANLVKDKQTWVDRHAER 409 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 +T L + + VH VY +AW + + QFR+DIY L ++ Sbjct: 410 TRTQWFALNSTLNVHLVYWTAWIDEHNQAQFRNDIYQLQTLNT 452 >gi|257095730|ref|YP_003169371.1| peptidoglycan-binding domain 1 protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048254|gb|ACV37442.1| Peptidoglycan-binding domain 1 protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 542 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 111/425 (26%), Positives = 182/425 (42%), Gaps = 22/425 (5%) Query: 16 VYLILPMGLSLVEKPIHASVLD-EIINESYHSI-----VNDRFDNFLAR--VDMGIDSDI 67 ++ +L L + +D + + Y I + + +A + Sbjct: 101 LHAMLHTALRRYVSDLRYGRVDPQQLGARYSPIGSAPAPDALLHSAMADDQMPDLARRAA 160 Query: 68 PIISKETIAQTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGD 123 P + +A+A Y+ + W P LP L G + V RL RLI+ D Sbjct: 161 PR--SADYERLRQALAAYRAVAGHPAWQQELPPLPSGKLAPGQAYSGVSRLTARLIVLAD 218 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 L ++ + +K FQ RHGL P G++ T E + V R+ QL++ L R+ Sbjct: 219 LPVGTLPPPRYEGSLVDGIKSFQERHGLTPDGVIGKETFEQLKVSPGARVGQLELALERL 278 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGL----RSTVIVGRV-DRQTPILHSRINRI 238 + Q+ G R ++VN+P L + G VIVG +TP+ + + + Sbjct: 279 RWTPLQRQG-RIIVVNVPEFMLHTYQMNDKGSDPGPVMRVIVGNARKTRTPLFDAEMRFV 337 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD-WNSPEPPNFI 297 F+PYW +P SI + + + LR DP Y + ++ G+ + ++ Sbjct: 338 EFSPYWNVPPSISRGETLPRLRSDPGYFERQGFELVTSDGRVLGSLPEGGLDALAQGRMR 397 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ PG NA+ K F + +N Y+H TP LF R + GC+RV DL ++L Sbjct: 398 IRQKPGARNALGDIKFVFPNTDNIYLHHTPTAQLFKRDRRDFSHGCIRVEAPADLAEFVL 457 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 P W+R I + +K K+ ++L E+PV Y +A +D + F DIYGLD Sbjct: 458 AGEPEWTRQRIIQAMKRGKSATLRLKEEIPVVIAYRTATV-RDGRVHFFPDIYGLDRALR 516 Query: 418 GIIPL 422 + Sbjct: 517 DALQQ 521 >gi|127512756|ref|YP_001093953.1| peptidoglycan binding domain-containing protein [Shewanella loihica PV-4] gi|126638051|gb|ABO23694.1| Peptidoglycan-binding domain 1 protein [Shewanella loihica PV-4] Length = 458 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 174/374 (46%), Gaps = 6/374 (1%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPL 102 I F + + + P ++ + + + W P P L Sbjct: 78 RQGIATGEFPSAPDDPYTSVIASEPQVAD--YLMLSNRVRYLLWLARHESWLPLEPQGWL 135 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+S + +R RL GD + FD +++A+ FQ RHGL P ++ +TL Sbjct: 136 KPGDSHRIIPEIRVRLQALGDYPQGDTSGLYFDETLKAAMIKFQTRHGLKPDAIIGPATL 195 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +N R + L VN +R + +G RY+L+NIPA + V++ +V LRS VIVG Sbjct: 196 SWLNRTPRERAQLLAVNFIR-RAEYLADIGERYLLINIPAYEMWLVDDNQVALRSKVIVG 254 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + RQTPI+ I ++ NP W +PR ++ D++ +R+D Y+ N + D +G+ V Sbjct: 255 KPYRQTPIISGEIKNLVLNPSWRVPRRLLTHDLLPKVREDGSYISSRNFEVFDYQGERVI 314 Query: 283 VEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 + +W F +R Q PG N + K F + + Y+HDT + LF R + Sbjct: 315 KSDDEWRDIAKGKFPYRLVQKPGVGNTLGRYKFFFPNEYSVYLHDTSDKALFQRSDRALS 374 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 SGC+R+ + L W+ + + ++ KT +P+H VY ++W D Sbjct: 375 SGCIRIEKVEQLANWMASHLVRDKQTWVRMQIERDKTQWFAFDAGLPIHLVYWTSWLDDD 434 Query: 401 SIIQFRDDIYGLDN 414 ++ QFRDDIY + Sbjct: 435 NVAQFRDDIYKKNQ 448 >gi|304320160|ref|YP_003853803.1| hypothetical protein PB2503_02927 [Parvularcula bermudensis HTCC2503] gi|303299063|gb|ADM08662.1| hypothetical protein PB2503_02927 [Parvularcula bermudensis HTCC2503] Length = 572 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 113/400 (28%), Positives = 190/400 (47%), Gaps = 18/400 (4%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAF 84 + V +++ D +++ I IP + + ++ + Sbjct: 163 QMASSATDRPVHSQLVKSVR--------DAGQGKIERSISPFIPSNPQ--YERLQETLKT 212 Query: 85 YQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAV 142 Y+ I GGW L + P+ G+ + LR RL G LD S D + SA+ Sbjct: 213 YRQIEEDGGWEALDVGPIVKPGDRHAVISPLRTRLAKEGFLDRQHDNGSPLLDRPLRSAL 272 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 Q +HG+D G+ T A+N PV+ +I +L +L R ++L +G +YV NIP+ Sbjct: 273 IAAQAQHGIDEDGVFGPETARALNEPVESKIARLADSLYRWREL--GDLGDKYVWANIPS 330 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 E +N + + I+G+ DR TP +++ I+ NP W +P SI+Q+D + L++D Sbjct: 331 FRAEGWKNRRKEISMRAIMGQPDRPTPTFSDKVDYIVANPKWYVPSSIMQRDKLPKLQRD 390 Query: 263 PQYLKDNNIHMIDEK-GKEVFVEEVDWNSPEP-PNFIFRQDPGKINAMASTKIEFYSRNN 320 P Y +ID+ G+ V EVDW + + + Q GK NA+ KI F ++ + Sbjct: 391 PGYAARGEYTVIDKTTGEAVSPYEVDWFADDVTARYRLVQGAGKGNALGRIKIIFPNQYS 450 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF++ R +SGCVR+ + ++ W+ + IE ++ ++T V Sbjct: 451 VYLHDTPTKSLFDHATRAFSSGCVRLEHPQEMAEWIARTNGQEKVDQIEMALRDKETERV 510 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIY--GLDNVHVG 418 +L+ E+PVH Y++ + F DIY G D V Sbjct: 511 ELSAELPVHITYMTVTVDEAGTPTFWRDIYNKGQDEQLVA 550 >gi|145298228|ref|YP_001141069.1| hypothetical protein ASA_1213 [Aeromonas salmonicida subsp. salmonicida A449] gi|142851000|gb|ABO89321.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 494 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 117/345 (33%), Positives = 165/345 (47%), Gaps = 5/345 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + + + WP L + L G +S + ++R L GD P Sbjct: 146 AEYESVREEVRKLLAMPMAKQWPTLTMPTLRAGEASPELGQIRTILNELGDGAPR-HDDA 204 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + A+K FQ RHGL G++ T +N +R L NL R + L++ G Sbjct: 205 TYDVDTQQAIKQFQRRHGLTADGIIGRQTRTWLNTGPQVRASLLLRNLWR-RDLVDHLSG 263 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYVLVNIP L VE+G S VIVG+ R TPIL S I I+ NP W +PRSI+ Sbjct: 264 ARYVLVNIPDYRLSVVESGNEVFTSRVIVGKEQRATPILASEIRSIVLNPPWHVPRSILS 323 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS--PEPPNFIFRQDPGKINAMAS 310 KD++ L +DP YL +ID +G V E W + RQ PG NA+ Sbjct: 324 KDILPKLGRDPAYLNREQFEVIDGEGNPVQFTEEGWYQALAAGFPYRLRQKPGDHNALGR 383 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K + + Y+H TP LF R +SGC+RV + DL LL D+ + + Sbjct: 384 YKFYLPNNDAIYLHSTPRKALFEQGARAFSSGCIRVEHADDLAELLLADS-RYQPDKVAS 442 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++K +T + L T +PV VY S+W ++ Q R+DIYG D V Sbjct: 443 ILKNTQTKWLPLTTPIPVFTVYWSSWIDEEGRQQLRNDIYGFDRV 487 >gi|254490473|ref|ZP_05103659.1| Putative peptidoglycan binding domain protein [Methylophaga thiooxidans DMS010] gi|224464217|gb|EEF80480.1| Putative peptidoglycan binding domain protein [Methylophaga thiooxydans DMS010] Length = 501 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 111/424 (26%), Positives = 193/424 (45%), Gaps = 24/424 (5%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESY--------HSIVNDRFDNFLARVDMGIDSD 66 + +L + + + LD + + + + ++ Sbjct: 84 YFDTLLTDAMLDLIHDLAIGRLDPAQADPTWFIPRDKVNPAEELQKALLNPYIKNVLNKL 143 Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLD 125 +P + + Q ++ Y+ RGGW +P PL G+S V LR RLI Sbjct: 144 LPPLPQ--YHQLTHFLSQYRGYQLRGGWQTVPTMPLLRPGDSHQHVPSLRARLITENPSL 201 Query: 126 P--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + +D + VK FQ RHGL G+V S T A+N VD I +++VNL R Sbjct: 202 NLIEVEQTTIYDRQLVETVKQFQARHGLKIDGIVGSETRAALNQSVDDLITKIRVNLERF 261 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L +G RY+LVN+ + L AVE+G++ L VIVG+ R TP +S + ++ NPY Sbjct: 262 RWLP-DDLGKRYLLVNLGSHQLSAVEDGQIKLNMKVIVGKSQRATPSFNSAMTHLVINPY 320 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP----PNF 296 W +P + ++D++ + +P Y N ++ + V ++W+ + Sbjct: 321 WNVPHKLARRDLLPKQQANPDYFFLNEFNLFLRNAEVHTPVDPYRINWDEVSALSSEFPY 380 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 +Q PG++NA+ K F + N Y+HDTP+ LF+ R +SGC+RV + + L + Sbjct: 381 RLQQRPGELNALGRLKFMFPNPWNIYLHDTPDKALFSENQRNFSSGCIRVEDPLALGQFS 440 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 L + + ++ + + + KL T +PV+ VY + W ++F D YG D+ Sbjct: 441 LNENNA--QSWLQSQIDSGQNRGRKLETPLPVYAVYFTIWPD-QGEVRFSPDPYGRDSTI 497 Query: 417 VGII 420 + Sbjct: 498 AKRL 501 >gi|167645745|ref|YP_001683408.1| peptidoglycan-binding domain-containing protein [Caulobacter sp. K31] gi|167348175|gb|ABZ70910.1| Peptidoglycan-binding domain 1 protein [Caulobacter sp. K31] Length = 500 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 113/388 (29%), Positives = 165/388 (42%), Gaps = 21/388 (5%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR- 100 Y + R+ +DS P + K + Y+DI +RGGW L Sbjct: 131 APYDPGPDFVQAVAEDRLGPWLDSLPPPYT--GYQTLRKGLTTYRDIAARGGWKPLAGGA 188 Query: 101 PLHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 PL LG + + L+ RL D + FD ++ A+ Q R GL+P G + Sbjct: 189 PLKLGATGDPRIAALKVRLAAE-DATVVVDKAQVFDEVLQQALMRAQKRFGLNPDGGLGP 247 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 +TL A+NVPV+ RI Q+ N+ R + L + R + VNI AA + + L Sbjct: 248 ATLAALNVPVERRIDQILANMERWRWLPRELPADR-IQVNIAAAVMSVFHDDAPNLTMRA 306 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 + GR +TP+L S I+ I+ NP W +P SI K++ R P YL N+ +I Sbjct: 307 VTGRPGDETPMLQSTIHSIVLNPPWNVPSSIATKELWPKERAHPGYLARNDFIVIP---- 362 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 +Q G A+ K +F + Y+HDTP F + R Sbjct: 363 -----------TGEGTSRLQQKAGPKAALGLVKFDFDNPYGVYLHDTPSRSKFESYSRLA 411 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 + GCVR+ I L LL +P W +E + KT LA + V +Y +A+ Sbjct: 412 SHGCVRLEKPIPLAKQLLASSPDWQPDVVEATIAAGKTVRAPLAQPIAVFLLYWTAYMTP 471 Query: 400 DSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 D + FRDD YG D V V I Sbjct: 472 DGQMNFRDDPYGWDKVLVQRIAAGAPSA 499 >gi|304397085|ref|ZP_07378964.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] gi|304355234|gb|EFM19602.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] Length = 603 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 120/459 (26%), Positives = 189/459 (41%), Gaps = 68/459 (14%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD-MGIDSDIPIISKETI 75 YL + + S + + + ++VN + A D I S P + Sbjct: 135 YLQFVSNVPTQGETWLYSNVPYRLTQPSVAVVNQWQNAVNAGSDNAFIASLQPQHPQ--Y 192 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDL---------- 124 A+ + + WP+L L G S V LRE L SG L Sbjct: 193 QPMHAALITL--LSDKQPWPQLKSSETLRPGQVSDDVPALREILQRSGMLTAQVNAPAPN 250 Query: 125 ---------------------DPSKGLSV-----------------------AFDAYVES 140 + +S +D + + Sbjct: 251 DDAVPVAASPVTHSDQPVAVSPSAAPVSNLLTPSPQSPGNVQSQTLEGNTANIYDETLVA 310 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ GLD G + + T + +NV +R L +N+ R++ L + ++VNI Sbjct: 311 AVKRFQQWQGLDGDGAIGARTRQWLNVSPQMRASLLALNIQRLRLLPDDMHNG--IMVNI 368 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 SL G L S VIVGR DR+TP++ S +N ++ NP W +P ++++KD++ ++ Sbjct: 369 ANYSLIYYNKGNKILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRKDIIPKVK 428 Query: 261 QDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEF 315 DP YL + ++ + + +DW +F +R Q PG+ NA+ K Sbjct: 429 LDPTYLYKHGYTLLSGWSADAEVIDPSMIDWRMVTASSFPYRLIQAPGEANALGRYKFNM 488 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV +L LL+D W+ I +K Sbjct: 489 PSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGLLLQDA-GWNDARISSTLKEG 547 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V + +PV+ Y++AW D QFR DIY D+ Sbjct: 548 DTRYVPIRHRIPVNLYYLTAWVADDGKPQFRTDIYNYDD 586 >gi|119471875|ref|ZP_01614183.1| hypothetical protein ATW7_04554 [Alteromonadales bacterium TW-7] gi|119445248|gb|EAW26538.1| hypothetical protein ATW7_04554 [Alteromonadales bacterium TW-7] Length = 453 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 113/359 (31%), Positives = 178/359 (49%), Gaps = 10/359 (2%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGD 123 S + I +TEKAI +YQ+I++RGG+ LP L LG++S +V L RL D Sbjct: 77 YYFDQYSAQLIKRTEKAINWYQEIVNRGGFISLPASELLELGSNSKAVSLLAMRLFQEQD 136 Query: 124 LDPS--KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 L + FD ++E AVK FQ RHGL+ G V +T +N+ + ++ +L++N Sbjct: 137 LRTNVCSKAPCIFDKHIERAVKQFQHRHGLNVDGRVGKNTFAKLNISAEQKLNKLKLNFY 196 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 RI +YV VNIP L V+ G V L++ VIVG+ +TP I + + N Sbjct: 197 RITNF-AGSSDEQYVYVNIPEYQLRYVKVGDVKLQNNVIVGKPSWETPAFSDEIEKFVVN 255 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE---KGKEVFVEEVDWNSPEP--PNF 296 P W IP SI +++ + +DP YL NNI + + V +DW+S +P + Sbjct: 256 PEWRIPISIATREIAPKVAEDPDYLVKNNIEIRKNSYIDSQTVNPNNIDWDSIKPYQFDH 315 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 + G+ N + K F + Y+HDTP F+ R + GC+R+ + L + Sbjct: 316 FLVKRAGEKNPLGEVKYLFPNPEAIYVHDTPAKQRFSQTRRALSHGCIRIEDPFSLAQEI 375 Query: 357 LKDT-PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +K ++ + + T L +P+H VY +AW ++ ++ FRDDIY D Sbjct: 376 IKHQGEEYALEQVNDARSENSTQTFYLDEPLPIHLVYWTAWVDENKLVNFRDDIYKRDQ 434 >gi|320540487|ref|ZP_08040137.1| putative murein L,D-transpeptidase [Serratia symbiotica str. Tucson] gi|320029418|gb|EFW11447.1| putative murein L,D-transpeptidase [Serratia symbiotica str. Tucson] Length = 541 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 111/459 (24%), Positives = 191/459 (41%), Gaps = 69/459 (15%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + S + + ++++N + R+ ++S +P + Sbjct: 73 YLQFVSAIGTHGNSWLYSNIPYKLGLPPNAVINQWQLAVRQDRLQSYVNSLVPQHPQ--Y 130 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERL-------------IIS 121 + +A+ +++ WP++ P L+ G S + LRE L Sbjct: 131 TKMYQALRDM--LVNNRPWPQVSNGPNLYPGQLSNDIPALREILMRIDMLTHSAPVAQAR 188 Query: 122 GDLDPSKGLSV------------------------------------------AFDAYVE 139 G L ++ + + Sbjct: 189 GRLARNEPDDGGLSVGEENNRESLVATSARDITLAAGSTVITQSAASVTVGETVYSPDLV 248 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 + VK FQ GL+ G++ + T E +NV R+ L +N+ R++ L ++VN Sbjct: 249 AGVKRFQKWQGLNTDGVIGARTREWLNVSPQTRVALLALNIQRLRILPGYI--SSGIMVN 306 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP S+ +NG+ L S VIVGR R+TP+++S ++ ++ NP W +P S+++ D++ Sbjct: 307 IPNYSMTYYQNGREVLSSHVIVGRPSRKTPLMNSGLSNVVLNPPWNVPTSLVRADIVPKA 366 Query: 260 RQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIE 314 +D Y + + ++ + K + +DWNS + RQ PG N++ K Sbjct: 367 MRDGSYFQQHGYTLLSDWSKDAKVIDPAMIDWNSVSARNFPYRVRQAPGASNSLGRFKFN 426 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LF +R +SGCVRV DL LL D WS + ++ Sbjct: 427 MPSSDAIYLHDTPNHNLFQKDMRALSSGCVRVNKADDLANMLLHDA-GWSNDRVASTLQE 485 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V + +PV Y++AW D +QFR DIY D Sbjct: 486 GNTTYVNIRQRIPVKLYYLTAWVSDDGQMQFRTDIYNYD 524 >gi|304411335|ref|ZP_07392949.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|307305343|ref|ZP_07585091.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] gi|304350190|gb|EFM14594.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|306911646|gb|EFN42071.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] Length = 521 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 108/410 (26%), Positives = 181/410 (44%), Gaps = 9/410 (2%) Query: 22 MGLSLVEKPIHASVLDEI----INESYHSIVNDRFDNFLARVDMGIDSDIPIISKET-IA 76 GL E + + L + +D+ + +I + Sbjct: 108 FGLYYRELTLSPNTLSAADMARVQADVAGYWRYIKTFAQCNNGAPVDTVLTVIPTDLHYQ 167 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + K + + + W L L +G S + + +RL + GDL + + Sbjct: 168 RVLKQVTHLVQLDATEPWETLVLDEKLTVGMSHPLLDTIAKRLWLLGDLAIEPKTNFVYS 227 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + VK FQ RHGL G++ TL +N R L N +R + E+K+ Y Sbjct: 228 EELVVGVKRFQQRHGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVF-ERKLEPSY 286 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +L+N+PA + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P SI+++D+ Sbjct: 287 LLINVPAFEMILVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDI 346 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKI 313 + +R++ YL + + D G+ V +W + + Q PG NA+ K Sbjct: 347 LPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNALGKYKF 406 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F + + Y+H T EP LFN R +SGC+R+ + +L W + R + Sbjct: 407 HFDNSFSVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLAPD 466 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + L+ ++PVH VY++AW Q+R DIY L+ +P Sbjct: 467 VTEPQWFSLSQKLPVHLVYLTAWLDDSGQEQYRSDIYHLEAELTNAVPAT 516 >gi|256830357|ref|YP_003159085.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfomicrobium baculatum DSM 4028] gi|256579533|gb|ACU90669.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfomicrobium baculatum DSM 4028] Length = 543 Score = 342 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 103/417 (24%), Positives = 180/417 (43%), Gaps = 26/417 (6%) Query: 29 KPIHASVLD-EIINESYHSIVNDRFDN--------FLARVDMGIDSDIPIISKETIAQTE 79 + +H +D I E++ DRFD R+ + P + + Sbjct: 124 RDLHFGQIDPRQIQENFTPPAPDRFDPLAHLQRAVREKRLREAVREAAPQVP--LYGRLR 181 Query: 80 KAIAFYQDILSRG----GW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 +A+A Y+ + W P LP L +G S + + RLI GDL ++ Sbjct: 182 EALAQYRQLSEDPVFSQLWQSSLPPLPNGKLEIGESYAGMPLVVLRLIALGDLPRETVMT 241 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 ++ ++ + FQ+RHGL+P G++ T + V R+RQ+++++ R++ Sbjct: 242 ERYEGHIVKGIMDFQVRHGLEPDGVIGRKTYAQLGVTPSARVRQIELSMERLRWTP-LLH 300 Query: 192 GLRYVLVNIPAASLEAVE--NG--KVGLRSTVIVGRVDRQ-TPILHSRINRIMFNPYWVI 246 R + VNIP LEA E NG +V VI+G TP+ R+ I F+PYW + Sbjct: 301 APRMIAVNIPEHVLEAYEVQNGTVQVQTTMRVIIGSALNMRTPLFDGRMRSIEFSPYWNV 360 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD-WNSPEPPNFIFRQDPGKI 305 P SI + +++ + +DP Y + G+ + +D + RQ PG Sbjct: 361 PLSIARSEVVPKILRDPSYFVRQGFEFVAADGQIITTLSMDDLEAVRSGQMRIRQRPGPR 420 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA+ K F ++++ ++H TP LF R + GC+RV + + L ++L+ W Sbjct: 421 NALGDIKFIFPNKDSIFLHHTPTTHLFEKQRRDLSHGCIRVEDPVGLAKFVLQHDQVWGE 480 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 I E + ++ ++L V Y + + F DIYG D + + Sbjct: 481 ERIREAMSAGVSSTLRLREPPQVVLAYNTVQVKNGGRVHFFQDIYGQDKLLDQALRR 537 >gi|332525152|ref|ZP_08401329.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332108438|gb|EGJ09662.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 547 Score = 342 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 112/428 (26%), Positives = 187/428 (43%), Gaps = 22/428 (5%) Query: 22 MGLSLVEKPIHASVLDEIINESYHSIVNDR--FDN--FLARVDMGIDSDIPIISKETIAQ 77 L + + L + + R D + + + P++ + A+ Sbjct: 124 YLSDLHQGRLDPRTLYRSLTLPERPPFDARAVLDAGLAAGSLALAVRRAEPVLPQ--YAE 181 Query: 78 TEKAIAFYQDILSRGGW----PELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 +A+A Y+ + W P LP R L G + + L RL+ GDL Sbjct: 182 LRQALARYRTLEHDPAWAAPLPPLPQVGRTRKLEPGAAWPGLPALAARLVALGDLPAGPH 241 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + V+ FQ RHG+ G++ ++T + V R QL + L R++ Sbjct: 242 AGTVYAEPLVGGVRRFQQRHGVSADGVIGAATFSRLEVKPAARAEQLVLALERLRWTPLL 301 Query: 190 KMGLRYVLVNIPAASLEAVE--NGK--VGLRSTVIVGRV-DRQTPILHSRINRIMFNPYW 244 + R V+VNIP L A E +G+ V R V+VG+ D++TP++ +++ I F+PYW Sbjct: 302 E-SRRMVVVNIPEFVLRAYEVQDGRITVVQRMRVVVGQALDKRTPLIDAQMRAIEFSPYW 360 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV-FVEEVDWNSPEPPNFIFRQDPG 303 +P SI++ + + LR+DP YL + G V ++ + RQ PG Sbjct: 361 NVPPSIVRAETLPKLRRDPDYLAREGFEFVAGDGSVHGEVSAEALDALAAGRWRIRQRPG 420 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ K F + Y+H TP LF R + GCVR+ + + L +++L+D P W Sbjct: 421 PRNALGDIKFVFPNAEQIYLHHTPSTALFARDRRDFSHGCVRIEDPLALAMFVLRDQPDW 480 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 I E + ++ ++LAT V V Y +A KD + F DDIY D + Sbjct: 481 PEARIREAMDAGESRTLRLATPVRVLIAYGTALV-KDGQVYFFDDIYRQDPRLQAALRER 539 Query: 424 EDHPIDSD 431 + +D Sbjct: 540 AAPAVRAD 547 >gi|254437318|ref|ZP_05050812.1| Putative peptidoglycan binding domain protein [Octadecabacter antarcticus 307] gi|198252764|gb|EDY77078.1| Putative peptidoglycan binding domain protein [Octadecabacter antarcticus 307] Length = 541 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 111/411 (27%), Positives = 189/411 (45%), Gaps = 12/411 (2%) Query: 18 LILPMGLSLVEKPIHA-SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L L + + SV+ EI E + FL + +P S E A Sbjct: 127 LFLSYANDIQTGILTPRSVVSEIRREVPLRSRLEYLQGFLGSTPASYLATLPPSSSE-YA 185 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + + +L+ GGW P + L G S V LR+RL+ G ++ S +D Sbjct: 186 RLLREKMTLERLLANGGWGPSVSSSSLAAGASGAGVVALRDRLVAMGHMERSAT--QTYD 243 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +++AV+ FQ HGL G ++TL +NVP R++Q+ V + R + + + G R+ Sbjct: 244 VTIQAAVQRFQQAHGLTADGDAGAATLAEINVPAASRLQQIIVAMERERW-MNRPRGERH 302 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQK 253 V VN+ S ++N V ++ ++G RQTP ++ ++ NP W +PRSII Sbjct: 303 VWVNLVDFSAAIMDNDSVTFQTRSVIGATGSGRQTPEFSDVMDHMVINPSWFVPRSIIVG 362 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 + + +++ + +I + D G+ V V++++ F F RQ P NA+ Sbjct: 363 EYLPAMQRSRDAIS--HILLTDGNGRTVNRGNVNFSNYTARTFPFSMRQPPSSRNALGLV 420 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ N Y+HDTP LF +R + GC+R+ + + LL + + + Sbjct: 421 KFMFPNQYNIYLHDTPAKSLFAREIRAYSHGCIRLNDPFEFGHALLAAQEADPEGYFQRI 480 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + T V L VPVH VY +A++ + FR DIY D+ + Sbjct: 481 LNSGTETRVNLVDPVPVHIVYRTAFTHTTGQLNFRRDIYDRDSRIWNALAN 531 >gi|146292990|ref|YP_001183414.1| peptidoglycan binding domain-containing protein [Shewanella putrefaciens CN-32] gi|145564680|gb|ABP75615.1| Peptidoglycan-binding domain 1 protein [Shewanella putrefaciens CN-32] Length = 484 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 103/377 (27%), Positives = 173/377 (45%), Gaps = 4/377 (1%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGN 106 M +++ +S K I+ + S+ W L L +G Sbjct: 102 WQHISALSGCDAVMTNNTNADPMSDIHYQAVLKKISQLIQLESQFSWETLMLENKLTVGQ 161 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + V + +RL + GD+ + + + +K FQ+RHGL G++ TL +N Sbjct: 162 THPIVNTIAKRLWLLGDMPKEVDVEQVYTDELMLGIKRFQLRHGLQTDGVIGKQTLYWLN 221 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 R L N +R + + +K+ RY+L+N+PA ++ VE + L S VIVG+ R Sbjct: 222 QSPRQRAVLLARNELRQR-IFSRKLTPRYLLINVPAFEMKLVEQEQTVLTSKVIVGKSSR 280 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 QTPIL S+I+ I+ NP W +P SI+++D++ +R+D YL+D + D G+ +F Sbjct: 281 QTPILDSQISSIVLNPSWRVPSSILRRDILPHIRKDGYYLQDREFDVYDYSGQLIFHTPE 340 Query: 287 DWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +W + + Q PG NA+ K F + + Y+H T EP LF R +SGC+ Sbjct: 341 EWQELASSRFPYQLVQRPGPKNALGKYKFHFDNSFSVYLHGTSEPALFKRENRALSSGCI 400 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 R+ + +L W ++ L+ ++PVH VY +AW Sbjct: 401 RIEKVNELAQWFKRNLVKDKGLWDRLAPNVTDPQWFALSEKLPVHLVYWTAWLDDKGQDH 460 Query: 405 FRDDIYGLDNVHVGIIP 421 +R+DIY L+ + Sbjct: 461 YRNDIYHLEAEFTNAVT 477 >gi|304415070|ref|ZP_07395810.1| peptidoglycan binding domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] gi|304283074|gb|EFL91497.1| peptidoglycan binding domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] Length = 421 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 167/376 (44%), Gaps = 23/376 (6%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQ 112 + + S P + + + WP+LP L G V++ Sbjct: 42 LQQGNIAEYMASLTPQHPQ--YKNMRQVLKKLLS-EQHQPWPQLPNGSNLIPGKRDVNLP 98 Query: 113 RLRERLIISG----------DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 L + L + DL P + ++ + +AVK FQ GL P G++ + T Sbjct: 99 ILHKILSHANTWLTATTPVTDLPPPS-VDTLYNPALVAAVKRFQQAQGLTPDGIIGTGTR 157 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + +N+ R L +N+ R++ L ++VNI SL + G L S VIVG Sbjct: 158 KWLNLSPQKRATLLALNMQRLRILPADMK--TGIMVNIADYSLHYYQEGNEILSSAVIVG 215 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---K 279 R R+TP + S ++ ++ NP W +P S+++ D++ ++ D YLK + ++ K Sbjct: 216 RPSRKTPFMSSALSNVVINPQWKVPTSMVKNDILPKVKYDATYLKQHGYTILTNWNNNAK 275 Query: 280 EVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + ++W+ S + RQ PG N++ K S ++ Y+HDTP LF Sbjct: 276 IIDPSTINWHLISANNFPYRLRQAPGTNNSLGRYKFNMPSSDSIYLHDTPNHRLFQKETL 335 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVRV L LLKD W + +K TT V + +PV Y+++W Sbjct: 336 ALSSGCVRVHKAAILAKMLLKDA-GWDDTRLSNTLKQGNTTYVNIRQHLPVLLYYLTSWV 394 Query: 398 PKDSIIQFRDDIYGLD 413 K+ +QFR DIY D Sbjct: 395 DKEGKVQFRTDIYNYD 410 >gi|319426480|gb|ADV54554.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella putrefaciens 200] Length = 484 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 103/377 (27%), Positives = 173/377 (45%), Gaps = 4/377 (1%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGN 106 M +++ +S K I+ + S+ W L L +G Sbjct: 102 WQHISALSGCDAVMTNNTNADPMSDIHYQAVLKKISQLIQLESQFSWETLMLENKLTVGQ 161 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + V + +RL + GD+ + + + +K FQ+RHGL G++ TL +N Sbjct: 162 THPIVNTIAKRLWLLGDMPKEVDVEQVYTDELMLGIKRFQLRHGLQTDGVIGKQTLYWLN 221 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 R L N +R + + +K+ RY+L+N+PA ++ VE + L S VIVG+ R Sbjct: 222 QSPRQRAVLLARNELRQR-IFSRKLTPRYLLINVPAFEMKLVEQEQTVLTSKVIVGKSSR 280 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 QTPIL S+I+ I+ NP W +P SI+++D++ +R+D YL+D + D G+ +F Sbjct: 281 QTPILDSQISSIVLNPSWRVPSSILRRDILPHIRKDGYYLQDREFDVYDYSGQLIFHTPE 340 Query: 287 DWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +W + + Q PG NA+ K F + + Y+H T EP LF R +SGC+ Sbjct: 341 EWQELASSRFPYQLVQRPGPKNALGKYKFHFDNSFSVYLHGTSEPALFKRENRALSSGCI 400 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 R+ + +L W ++ L+ ++PVH VY +AW Sbjct: 401 RIEKVNELAQWFKRNLVKDKGLWDRLAPNVTDPQWFALSEKLPVHLVYWTAWLDDKGQDH 460 Query: 405 FRDDIYGLDNVHVGIIP 421 +R+DIY L+ + Sbjct: 461 YRNDIYHLEAEFTNAVT 477 >gi|120598924|ref|YP_963498.1| peptidoglycan binding domain-containing protein [Shewanella sp. W3-18-1] gi|120559017|gb|ABM24944.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. W3-18-1] Length = 484 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 103/377 (27%), Positives = 173/377 (45%), Gaps = 4/377 (1%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGN 106 M +++ +S K I+ + S+ W L L +G Sbjct: 102 WQHISALSGCDAVMTNNTNADPMSDIHYQAVLKKISQLIQLESQFSWETLMLENKLTVGQ 161 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + V + +RL + GD+ + + + +K FQ+RHGL G++ TL +N Sbjct: 162 THPIVNTIAKRLWLLGDMPKEVDVEQVYTDELMLGIKRFQLRHGLQTDGVIGKQTLYWLN 221 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 R L N +R + + +K+ RY+L+N+PA ++ VE + L S VIVG+ R Sbjct: 222 QSPRQRAVLLARNELRQR-IFSRKLTPRYLLINVPAFEMKLVEQEQTVLTSKVIVGKSSR 280 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 QTPIL S+I+ I+ NP W +P SI+++D++ +R+D YL+D + D G+ +F Sbjct: 281 QTPILDSQISSIVLNPSWRVPSSILRRDILPHIRKDGYYLQDREFDVYDYSGQLIFHTTE 340 Query: 287 DWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +W + + Q PG NA+ K F + + Y+H T EP LF R +SGC+ Sbjct: 341 EWQELASSRFPYQLVQRPGPKNALGKYKFHFDNSFSVYLHGTSEPALFKRENRALSSGCI 400 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 R+ + +L W ++ L+ ++PVH VY +AW Sbjct: 401 RIEKVNELAQWFKRNLVKDKGLWDRLAPNVTDPQWFALSEKLPVHLVYWTAWLDDKGQDH 460 Query: 405 FRDDIYGLDNVHVGIIP 421 +R+DIY L+ + Sbjct: 461 YRNDIYHLEAEFTNAVT 477 >gi|254473448|ref|ZP_05086845.1| peptidoglycan-binding domain 1 protein [Pseudovibrio sp. JE062] gi|211957564|gb|EEA92767.1| peptidoglycan-binding domain 1 protein [Pseudovibrio sp. JE062] Length = 625 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 108/422 (25%), Positives = 179/422 (42%), Gaps = 20/422 (4%) Query: 19 ILPMGLSLVEKPIHA-SVLDEIINESYHSIVNDRFD--NFLARVDMGIDSDIPIISKETI 75 G + + VL + +ND + D P + Sbjct: 199 FATYGAHIAGGVVRPTKVLKNVFISPQVPKLNDMLTQMEETRSLAQFFDGLEP--EAPSY 256 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLD--------- 125 + +A Y L+ + P + LG++ V +L +RL G Sbjct: 257 DILKDQLARYNAALTSDYPVYIEDGPSIRLGDTGGRVAQLEKRLQAEGYAPYYSDYTGTS 316 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 ++ ++ + VK FQ RHGL G+V T A+N ++ R Q+ VNL R++ Sbjct: 317 ETEVPPTFYNDDMVELVKDFQKRHGLTVDGVVGKKTRAALNASLEDRRNQILVNLERMRW 376 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 G RYV VN+ + +E V + +VG+ TP+ NP W Sbjct: 377 DDPLPSG-RYVKVNVAEQMVRVMEGTDVLYETRSVVGKPRNATPLFSDTFEYAEINPTWG 435 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPG 303 +P SI + + LR++ L I++ + GK V ++W++ + RQ G Sbjct: 436 VPWSIATNEYLPKLRKNASALSGTGINVY-KNGKRVDPTAINWSNVSKRKFGYQLRQKAG 494 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 + NA+ + K F +++N Y+HDTP LFN R + GC+RV++ LL + Sbjct: 495 RKNALGAVKYMFPNKHNIYLHDTPSKRLFNKDQRAFSHGCIRVQDPFTFGEVLLSGS-GH 553 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 SR +E++ KT +KL VPVH Y +A++ D +QFR+DIY D + + Sbjct: 554 SRAKMEKLRARGKTVRLKLTETVPVHLRYYTAFAGVDGELQFREDIYKQDKAILEALLTS 613 Query: 424 ED 425 +D Sbjct: 614 QD 615 >gi|237807403|ref|YP_002891843.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] gi|237499664|gb|ACQ92257.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] Length = 514 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 10/364 (2%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRE 116 D I+ P E + + + WP LP + G+S ++ +R Sbjct: 138 TDPDSAINKLRPQT--ENYLTNRRVLLSLLSESRKAPWPALPALKVRPGDSHDALPVIRN 195 Query: 117 RLIISGDLDPSKGLSV-----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L+ SGDL + +D AV+ FQ RHGLD G++ TL + +P + Sbjct: 196 ILLRSGDLQANTLTPQQMQLTTYDVQTVQAVEHFQQRHGLDADGVIGRRTLNWLRLPPQV 255 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R L +++R L + RYVLVNIP L ++ + S VIVG++ RQTPIL Sbjct: 256 RAVILARSILRSD-LPQNMSSRRYVLVNIPEFRLRVLDKKQEIFSSRVIVGQIKRQTPIL 314 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN-S 290 S I+ I+ NP W +P SI+QKD++ L +D +L ++D +G V + W+ + Sbjct: 315 SSEISSIVVNPAWHVPASILQKDLVPKLAKDKHFLDKGQFELVDSQGITVDPAAMVWDGT 374 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 E + RQ PG NA+ K + + Y+H T P F +R +SGCVRV Sbjct: 375 EENFPYQLRQKPGDHNALGRYKFYLPNNDAIYLHSTSSPGYFKRDLRALSSGCVRVEEAD 434 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 D LLKD+ W+ +++++K T + + VPV+ VY +W K +QFRDDIY Sbjct: 435 DFARLLLKDSK-WNINKLDQMLKEDTTKWLSMTDPVPVYTVYWRSWVDKQGQLQFRDDIY 493 Query: 411 GLDN 414 ++ Sbjct: 494 QFED 497 >gi|157961780|ref|YP_001501814.1| peptidoglycan-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846780|gb|ABV87279.1| Peptidoglycan-binding domain 1 protein [Shewanella pealeana ATCC 700345] Length = 451 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 168/343 (48%), Gaps = 4/343 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + + I Q + + W + L G S+ + + RL + GD + S Sbjct: 106 DGYLHLQNRIRHLQWLAEQDWWQVIESERLIRPGESNPIIPDVVRRLWLLGDASSAATGS 165 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + + A+K FQ+RHGL ++ TL+ +NVP + R L N ++ + + Q+ Sbjct: 166 NELNLPIVDALKRFQLRHGLKADAIIGPETLKWLNVPPEQRASILAKNFIQRAEFMAQR- 224 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 R++++NIPA +E ++G++ L S VIVG+ R TPIL S I+ ++ NP W +P+ I+ Sbjct: 225 DDRFLVINIPAFEMELFDHGELELASRVIVGKPYRPTPILSSSISNVVINPSWRVPKKIM 284 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMA 309 D++ +R+D Y+ N + D V W+ F FR Q PG N + Sbjct: 285 YNDLLPQVRKDGNYISQRNFDVFDRNNNLVMRTAEQWSDLAKGPFPFRFVQRPGTNNTLG 344 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + + Y+HDT +P LF R +SGC+R+ N+ L W+ + + ++ Sbjct: 345 RYKFYFPNDFSVYLHDTSDPKLFQRSNRALSSGCIRIENVQGLANWMAANLVKDKQTWVD 404 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 ++T L + + VH VY +AW + Q+RDDIY L Sbjct: 405 RHADRKRTQWFALKSSLNVHLVYWTAWIDGSNQAQYRDDIYQL 447 >gi|260753690|ref|YP_003226583.1| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553053|gb|ACV75999.1| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 502 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 107/382 (28%), Positives = 178/382 (46%), Gaps = 20/382 (5%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 + Y + + + + P S A + + +Y+ I +GGWP +P Sbjct: 128 DPYDPWPDFKNAVNSNTLGDWAANLPPPYS--GYAGLKNGLIYYRAIAEKGGWPVVPTGA 185 Query: 102 -LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ + V+ LR RL I D + S FDA +++AVK Q R+GL+P+G+V Sbjct: 186 DLTVGSDNPRVKTLRRRLAIE-DKELPDNGSSHFDAALKAAVKRAQQRYGLNPTGVVSGQ 244 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 TL+A+N PV RI Q+ N+ R + L + + + VN+ AA L E + + + Sbjct: 245 TLQALNQPVKSRIHQIMANMERWRWLP-RNLPENRIQVNVAAAVLTLFEKNQPVMSMKSV 303 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 GR +TP+L S I ++ NP W +P SI +K++ + P YL+ +I E G+ Sbjct: 304 TGRPGNETPMLRSTIYSLVINPPWNVPDSIAKKELWPKEKAHPGYLQAAGFKIIGESGQ- 362 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +Q PG N++ K +F + + Y+HDTP F+ R E+ Sbjct: 363 --------------GQRLQQKPGPRNSLGQLKFDFPNSYSVYLHDTPGRGAFSRYGRLES 408 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 GC+R+ + + L LL P W+ + + +T V+L V V Y +A+ + Sbjct: 409 HGCIRLEHPVALGERLLAADPAWTGDRLRSEIDKNETERVRLKQPVAVFLFYWTAFGNGE 468 Query: 401 SIIQFRDDIYGLDNVHVGIIPL 422 + + FR D Y D + I Sbjct: 469 NALSFRSDPYKWDELLAQKIEA 490 >gi|213160796|ref|ZP_03346506.1| hypothetical protein Salmoneentericaenterica_12358 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 397 Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 111/382 (29%), Positives = 169/382 (44%), Gaps = 51/382 (13%) Query: 78 TEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP---------- 126 A+ + WP+L L G S V LRE L +G LD Sbjct: 3 MHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPGDN 60 Query: 127 -------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + A+D + AVK FQ GL G Sbjct: 61 TSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADG 120 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG L Sbjct: 121 VIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQVL 178 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ Sbjct: 179 ASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMR 238 Query: 276 EKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + + +VDW + P N FR Q PG N++ K S + Y+HDTP L Sbjct: 239 GWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNL 298 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R +SGCVRV +L LL+D W+ I +K T V + +PV+ Sbjct: 299 FQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVNLY 357 Query: 392 YISAWSPKDSIIQFRDDIYGLD 413 Y++A+ D +Q+R DIY D Sbjct: 358 YLTAFVGADGRMQYRTDIYNYD 379 >gi|153000449|ref|YP_001366130.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS185] gi|151365067|gb|ABS08067.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS185] Length = 521 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 106/404 (26%), Positives = 179/404 (44%), Gaps = 6/404 (1%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS-KETIAQTEKAI 82 L+L + A+ + + +D+ +I + K + Sbjct: 115 LTLSPNTLSAAEMAR-VQADVAGYWRYIKTFAQCNNGAPVDTVSTVIPTDAQYQRVLKQV 173 Query: 83 AFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + + W L L +G S + + +RL + GDL ++ + + Sbjct: 174 THLVQLDATEPWETLVLDEKLTVGMSHPLLDTIAKRLWLLGDLAIEPMTNLVYSEELVVG 233 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ RHGL G++ TL +N R L N +R + E K+ Y+L+N+P Sbjct: 234 VKRFQHRHGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVF-ESKLEPSYLLINVP 292 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R+ Sbjct: 293 AFEMILVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRR 352 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + YL + + D G+ V +W + + Q PG NA+ K F + Sbjct: 353 NGHYLNERQFDVYDYNGQLVQHMPEEWQGLASTSFPYQLVQRPGAKNALGKYKFHFDNSF 412 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 + Y+H T EP LF+ R +SGC+R+ + +L W + R + + Sbjct: 413 SVYLHGTSEPSLFSKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLAPDVTEPQW 472 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 L+ ++PVH VY +AW Q+R DIY L+ +P Sbjct: 473 FSLSQKLPVHLVYWTAWLDDSEQEQYRSDIYHLEAELTNAVPAT 516 >gi|217973562|ref|YP_002358313.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] gi|217498697|gb|ACK46890.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] Length = 525 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 106/404 (26%), Positives = 179/404 (44%), Gaps = 6/404 (1%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET-IAQTEKAI 82 L+L + A+ + + +D+ +I + + K + Sbjct: 119 LTLSPNTLSAADVAR-VQADVTGYWRYIKTFAQCNNGAPVDTVPTVIPTDLQYQRVLKQV 177 Query: 83 AFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A + + W L L +G S + + +RL GDL + + + Sbjct: 178 AHLVQLDATDPWETLVLDEKLTVGMSHPLLDTIAKRLWRLGDLAIEPMTNFVYSEELVVG 237 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ +HGL G++ TL +N L N +R + E+K+ Y+L+N+P Sbjct: 238 VKRFQQKHGLKQDGVIGKQTLYWLNQSPKASAVLLAKNTIRQRVF-ERKLEPSYLLINVP 296 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R+ Sbjct: 297 AFEMFLVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRR 356 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + YL + + D G+ V +W + + Q PG NA+ K F + Sbjct: 357 NGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNALGKYKFHFDNSF 416 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 + Y+H T EP LFN R +SGC+R+ + +L W + R + + Sbjct: 417 SVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLAPDVTEPQW 476 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 L+ ++PVH VY +AW Q+R DIY L+ +P Sbjct: 477 FSLSQKLPVHLVYWTAWLDDSGQEQYRSDIYHLEAELTNTVPAT 520 >gi|308186271|ref|YP_003930402.1| hypothetical protein Pvag_0751 [Pantoea vagans C9-1] gi|308056781|gb|ADO08953.1| Uncharacterized protein ycbB [Pantoea vagans C9-1] Length = 603 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 120/459 (26%), Positives = 188/459 (40%), Gaps = 68/459 (14%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETI 75 YL + + S + + + ++VN + A D I S P + Sbjct: 135 YLQFVSNVPTQGETWLYSNVPYRLTQPSVAVVNQWQNAVNAGSADTFIASLQPQHPQ--Y 192 Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLI--------------- 119 A+ + + WP+L L G S V LRE L Sbjct: 193 QLMHVALKAL--LSDKQPWPQLKSSETLRPGQVSDDVPALREILQRSGMLTAQVNAPAPD 250 Query: 120 --------------------------ISGDLDPSKGLSV-------------AFDAYVES 140 ++ L PS +D + + Sbjct: 251 DDAVPAAPVPVSHSDQPVAVSPSAAPVTNLLTPSPQSPGNIQTSTLEGNTANVYDETLVA 310 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ GLD G + + T + +NV +R L +N+ R++ L + ++VNI Sbjct: 311 GVKRFQQWQGLDGDGAIGTRTRQWLNVSPQMRASLLALNIQRLRLLPDDMHNG--IMVNI 368 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 SL NG L S VIVGR DR+TP++ S +N ++ NP W +P ++++KD++ ++ Sbjct: 369 ANYSLIYYNNGNKILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRKDIIPKVK 428 Query: 261 QDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEF 315 QDP YL + ++ + + +DW +F +R Q PG NA+ K Sbjct: 429 QDPTYLYKHGYTLLSGWSADAEVIDPSMIDWRMVSAASFPYRMIQAPGVANALGRYKFNM 488 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV +L LL+D W+ I +K Sbjct: 489 PSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGLLLQDA-GWNDSRISSTLKEG 547 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V + +PV+ Y++AW D QFR DIY D+ Sbjct: 548 DTRYVPIRHRIPVNLYYLTAWVADDGKPQFRTDIYNYDD 586 >gi|312887255|ref|ZP_07746859.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311300567|gb|EFQ77632.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 544 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 99/391 (25%), Positives = 174/391 (44%), Gaps = 21/391 (5%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 AS D+ + + P+ + + Y + R Sbjct: 166 TASSSARWYLPRKKVNYAQYLDSLIKMPSKQAAAAEPVYRQ--YELLRSYLRKYYLLNER 223 Query: 92 GGWP--ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 W L + G+++ + +++RL + D L A++A +++A+ FQ R+ Sbjct: 224 DKWSNITLTGKVFKPGDTAAVIATVKKRLYLLEDFKGD-TLDRAYNADLDTAILQFQSRN 282 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL +G+++ T+ MNVP+ RI+Q+ VN+ R + L + Y+ VNIP L Sbjct: 283 GLLANGLLNKETVAEMNVPLKKRIQQILVNMERCRWLP-ISLNSDYLAVNIPEFKLHVFH 341 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + V+VG+ QT + + + ++F+PYW +P SI+QK+++ +++ YL + Sbjct: 342 ADSLLWSCNVVVGQTMHQTTVFYGDVKYVVFSPYWNVPPSIVQKEVVPEMKRHRDYLSTH 401 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + RQ PG N++ K F + N Y+HDTP Sbjct: 402 RMQI---------------TGYADGLPTIRQLPGPENSLGLVKFLFPNSYNIYLHDTPSK 446 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R + GC+RV+N L +LLKD W I+ + K V L +VPV Sbjct: 447 SLFGESARAFSHGCIRVQNPTKLANFLLKDQKNWDAQKIDVAMHAGKEQYVTLQNKVPVF 506 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y +A++ ++ + FR DIY LD+ ++ Sbjct: 507 IAYFTAFTDGNNKLNFRKDIYNLDDHLASML 537 >gi|241762099|ref|ZP_04760182.1| Peptidoglycan-binding domain 1 protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373349|gb|EER62949.1| Peptidoglycan-binding domain 1 protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 502 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 110/407 (27%), Positives = 186/407 (45%), Gaps = 23/407 (5%) Query: 20 LPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L ++ + AS D + + Y + + + + P S A Sbjct: 103 LDYARAIHSGRLSASDFDKNWGMKPDPYDPWPDFKNAVNNNTLGDWAANLPPPYS--GYA 160 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I D + S FD Sbjct: 161 GLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIE-DKELPDNGSSHFD 219 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 220 AALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWRWLP-RNLPENR 278 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI +K++ Sbjct: 279 IQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIAKKEL 338 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + P YL+ +I E G+ +Q PG N++ K +F Sbjct: 339 WPKEKAHPGYLQAAGFKIIGESGQ---------------GQRLQQKPGPRNSLGQLKFDF 383 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + + Sbjct: 384 PNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSEIDKN 443 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +T V+L V V Y +A+ ++ + FR D Y D + I Sbjct: 444 ETERVRLKQPVAVFLFYWTAFGNGENALSFRSDPYKWDELLAQKIEA 490 >gi|256823023|ref|YP_003146986.1| ErfK/YbiS/YcfS/YnhG family protein [Kangiella koreensis DSM 16069] gi|256796562|gb|ACV27218.1| ErfK/YbiS/YcfS/YnhG family protein [Kangiella koreensis DSM 16069] Length = 570 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 12/376 (3%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRE 116 + + P S + + K +A + WP + ++P + + ++ + Sbjct: 196 NLFDYFRALAP--SSQEYIELRKYLAELRSRTVS-PWPAIDLQPSIKPQMADPRLEAIAV 252 Query: 117 RLIISGDLDPS----KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 RL+ GDL + ++ + AV+ FQ+RHGL G++ T+ A+N+ R Sbjct: 253 RLMFWGDLPADWAYLAPFPMRYEDGLIRAVEHFQLRHGLVADGVLGKKTIAALNITPQQR 312 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 I QL VNL +I+ E K R + VNIP+ L A+ENG+V LR VIVG++ R+TPI Sbjct: 313 IEQLVVNLEQIRWH-ELKPASRLIKVNIPSFELLALENGEVRLRMPVIVGQLKRKTPIFE 371 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 +I ++ NP WV+P + KD + L++Q+PQYL DN + + K +DW Sbjct: 372 EKIQYLVLNPTWVVPWELATKDKLPLIQQNPQYLLDNQFSVYLQDFKIEDPTRIDWAQVT 431 Query: 293 --PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + Q PG NA+ K F + Y+HDTP+ LFNN +R +SGC+R++ + Sbjct: 432 RANFPYRLVQAPGSGNALGQVKFMFPNPYEVYLHDTPDKSLFNNELRAFSSGCIRIQRPL 491 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL W+L+ T +S IE + + T + L + VP+ Y +A+ D IQFR DIY Sbjct: 492 DLLWWILR-TNGFSDIDIENQLNKKHTNTISLTSPVPIRLEYRTAYWGLDQTIQFRADIY 550 Query: 411 GLDNVHVGIIPLPEDH 426 D + P Sbjct: 551 QRDTKLYQALQQPATR 566 >gi|158422063|ref|YP_001523355.1| hypothetical protein AZC_0439 [Azorhizobium caulinodans ORS 571] gi|158328952|dbj|BAF86437.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 649 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 98/333 (29%), Positives = 163/333 (48%), Gaps = 14/333 (4%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P P L G+ V LR RL L + +DA + AV FQ GL+ Sbjct: 310 RVPGGPTLRPGDMDARVPALRARLG----LKSATASDRLYDADLARAVAAFQGASGLNAD 365 Query: 155 GMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G+V STLE +N R + N+ R + L + +G +V+VNIP + V++GK Sbjct: 366 GVVGPSTLEVLNRVENPAERRADIIANMERWRWLP-RDLGSVHVMVNIPEFVVRVVDDGK 424 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 ++ V+VG+ + QTP+L + ++ NPYW IP SI +K+M+ L++DP +L + Sbjct: 425 TIHQTRVVVGKPENQTPLLTHDMEYVVLNPYWNIPPSIARKEMLPNLQRDPYFLARQGME 484 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 ++ + G+ V V+W + FRQ PG+ NA+ K F + ++ Y+HDTP LF Sbjct: 485 VV-KNGRVVDPGTVNWAQGTGG-YSFRQPPGERNALGRIKFMFPNDHSVYLHDTPSKALF 542 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 N R + GC+RV++ + + W+ I +++ + L +PVH Sbjct: 543 ANDRRAYSHGCIRVQDPLKFAEVIFNIGMPGQGWTDEKIGKML-GGAERYLTLKQRIPVH 601 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 VY + + + R+D+YG + + L Sbjct: 602 LVYFTTFVDDSGRLVSREDVYGTNAKVKEALGL 634 >gi|332532859|ref|ZP_08408732.1| hypothetical protein PH505_aj00520 [Pseudoalteromonas haloplanktis ANT/505] gi|332037705|gb|EGI74156.1| hypothetical protein PH505_aj00520 [Pseudoalteromonas haloplanktis ANT/505] Length = 441 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 114/359 (31%), Positives = 177/359 (49%), Gaps = 10/359 (2%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGD 123 S + I +TEKAI +YQ+I+++GG+ L L LG+++ V L +RL D Sbjct: 65 YYFDQYSAQLIERTEKAINWYQEIVNKGGFTHLYNDELLELGSNNKQVSLLAQRLYQERD 124 Query: 124 LDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 L + FD +E AVK FQ RHGL G V T ++NVP ++ +L++N Sbjct: 125 LKTNVCDEAICTFDKDIEQAVKQFQSRHGLKVDGRVGKRTFASLNVPAQQKLDKLKLNFY 184 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 RI +YV VNIP SL V+ G V L++ VIVG+ +TP I + + N Sbjct: 185 RITNFAGAS-DEQYVYVNIPEYSLRFVKAGDVKLKNNVIVGKPSWETPAFSDEIEKFVVN 243 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE---KGKEVFVEEVDWNSPEP--PNF 296 P W IP SI K++ + +DP YL NNI + + V +DW+S +P + Sbjct: 244 PEWRIPTSIATKEIAPKVAEDPDYLVKNNIEIRKNSYLDSQTVNPSNIDWDSIKPYQFDH 303 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 + G+ N + K F + Y+HDTP F+ R + GC+R+ L + Sbjct: 304 FLVKRAGEENPLGEVKYLFPNAEAIYVHDTPAKHRFSQANRALSHGCIRIEKPFSLAREI 363 Query: 357 LK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +K + + +++ + T L +P+H VY +AW ++ ++ FRDDIY D Sbjct: 364 IKYEGEAQTLNNMDTALAQNSTQTFYLDEPLPIHLVYWTAWVDENKLVNFRDDIYQRDK 422 >gi|146299088|ref|YP_001193679.1| hypothetical protein Fjoh_1328 [Flavobacterium johnsoniae UW101] gi|146153506|gb|ABQ04360.1| Uncharacterized protein [Flavobacterium johnsoniae UW101] Length = 539 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 107/378 (28%), Positives = 178/378 (47%), Gaps = 29/378 (7%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-----IRPLH 103 + D+ + + + + S+ + + + Y++I G W ++ + L Sbjct: 177 DRILDSLMGDPNRLNKDENLLFSQ--YYKLQNVLQRYRNIEKNGLWKKIEIDEANYKELK 234 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +S VQ++RERL + GDL S +D + AV ++ R+GL + ++ Sbjct: 235 PLDSGKVVQQIRERLFVVGDLKEDSK-SQYYDQEMMDAVLKYKKRYGLKLNYTFTKEQID 293 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 MN P+ RIR + +N+ R + + + YV+VNIP+ L V++GK L S V VG Sbjct: 294 QMNEPISNRIRTIMLNMERCRWIPTKLAKADEYVMVNIPSFRLIYVKDGKYDLVSDVFVG 353 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 +T I I+RI+F+PYW +P SII+ ++ + +D YL D+N+ Sbjct: 354 TRMTETVIFSGNIDRIVFSPYWYVPASIIKNELKLKMAEDKNYLADHNME---------- 403 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 WN RQ PG N++ K F + N+ Y+HDTP LF+ R + G Sbjct: 404 -----WNGGS-----VRQKPGPNNSLGLVKFMFPNPNDIYLHDTPAKSLFDFEKRTFSHG 453 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 C+ VR+ L + +LKD P W I + + K T L ++P++ Y +AW D Sbjct: 454 CINVRDAKKLALEILKDNPDWPVDKINDAMSGEKETTCMLKNKIPIYIGYFTAWVTDDGE 513 Query: 403 IQFRDDIYGLDNVHVGII 420 I F D+Y D ++ Sbjct: 514 IGFYPDVYDRDKQLDKLL 531 >gi|254230281|ref|ZP_04923670.1| putative peptidoglycan binding domain protein [Vibrio sp. Ex25] gi|151937178|gb|EDN56047.1| putative peptidoglycan binding domain protein [Vibrio sp. Ex25] Length = 345 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 163/370 (44%), Gaps = 34/370 (9%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSS 108 ++ F + + + PI + +A +G+ Sbjct: 2 DEAFYSAYSSLSEHAKYQYPIYEQTGLA--------------------------RVGDQL 35 Query: 109 VSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L ER+ + G D+ + +D +E AVK FQ HGL G++ +T+ +N Sbjct: 36 ENKPLLIERMEVVGVDVSYLDITTQQYDEELELAVKEFQRIHGLKEDGVIGPNTIRWINF 95 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 R+ L +N R + + + V VN+P + +G+ S V+VGR R+ Sbjct: 96 SPQERLHLLALNSERSRIWSKDR--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRK 153 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEE 285 TPI+ ++ ++ NP W +P +I+ KD++ ++++P YL ++NI +I + + Sbjct: 154 TPIMSGTLDSVILNPTWNVPWTIMVKDIIPKVKRNPMYLINHNIQIIRSWTSNEIIDPTT 213 Query: 286 VDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 ++W + P + RQ G NA+ K + Y+HDTP LF R +SGC Sbjct: 214 INWATVNPRTFPYRMRQASGLHNALGLYKFNMPNPQAIYLHDTPSKNLFERDRRAFSSGC 273 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 VRV + L L K R + R T V L + VH +Y +AW ++ + Sbjct: 274 VRVEHADQLAELLFKTQGLEERLAKKRESTRRSNTSVPLGERIQVHIIYQTAWL-EEGTL 332 Query: 404 QFRDDIYGLD 413 +RDDIY D Sbjct: 333 YYRDDIYKYD 342 >gi|307825667|ref|ZP_07655884.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307733244|gb|EFO04104.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 574 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 115/423 (27%), Positives = 192/423 (45%), Gaps = 29/423 (6%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRF----DNFLARVDMGIDSDIPIISKETIAQTEK 80 L ++ ++ + +++ + S P + + ++ Sbjct: 140 DLHYGRVNPQGINFNLKLREKKLIDLPLLIKDSLAQNNLAQLPLSLEPQFKQ--YQKLKQ 197 Query: 81 AIAFYQDILSRGGWPELP-----IRPLHLGNSSVSVQRLRERLIISGDLDP-----SKGL 130 A+A Y+ + + +P LH G S + LR L GDL S Sbjct: 198 ALANYRQLAA----IAVPFKLDVKETLHPGESHPQIAELRRFLTTVGDLPDDKTVISAEK 253 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S + + + VK FQ RHGL G + ++ A+NVP++ R+ QL++ + R++ L E Sbjct: 254 SSLYTDAIVTGVKAFQKRHGLTADGNIGKGSVAALNVPLNYRVTQLELAMERLRWLPELN 313 Query: 191 MGLRYVLVNIPAASLEAVE----NGKVGLRSTVIVGRVD-RQTPILHSRINRIMFNPYWV 245 +G ++VNIPA L A + + V+VG QTP+L + ++ I F PYW Sbjct: 314 VGAS-IIVNIPAFQLWAFDSIDQPDANIVNMRVVVGNALKTQTPVLMAEMHFIDFMPYWN 372 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD---WNSPEPPNFIFRQDP 302 +P SII+ +++ L Q+ YL N+ M+ ++ N + RQ P Sbjct: 373 VPYSIIKNEILPKLIQNSNYLDKENMEMVSVFRDGEKPTALNQETMNLLKEGKLRIRQRP 432 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G NA+ K F ++++ Y+HDTP LF+ R + GCVRV N L + LK+ Sbjct: 433 GGKNALGKVKFIFPNKDDVYLHDTPANALFSKSRRDFSHGCVRVANPQKLAEFALKNQDN 492 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W+ I+ + T K V L +PV F Y +A+ + ++F DIYG D V +G + Sbjct: 493 WNAETIQLAMNTPKMQRVILKKPIPVLFFYTTAFFDQYDNLEFYPDIYGHDAVLLGALSK 552 Query: 423 PED 425 P+D Sbjct: 553 PDD 555 >gi|283856545|ref|YP_163499.2| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775552|gb|AAV90388.2| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 483 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 110/407 (27%), Positives = 186/407 (45%), Gaps = 23/407 (5%) Query: 20 LPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L ++ + AS D + + Y + + + + P S A Sbjct: 84 LDYARAIHSGRLSASDFDKNWGMKPDPYDPWPDFKNAVNNNTLGDWAANLPPPYS--GYA 141 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I D + S FD Sbjct: 142 GLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIE-DKELPDNGSSHFD 200 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 201 AALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWRWLP-RNLPENR 259 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI +K++ Sbjct: 260 IQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIAKKEL 319 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + P YL+ +I E G+ +Q PG N++ K +F Sbjct: 320 WPKEKAHPGYLQAAGFKIIGESGQ---------------GQRLQQKPGPRNSLGQLKFDF 364 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + + Sbjct: 365 PNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSEIDKN 424 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +T V+L V V Y +A+ ++ + FR D Y D + I Sbjct: 425 ETERVRLKQPVAVFLFYWTAFGNGENALSFRSDPYKWDELLAQKIEA 471 >gi|170726506|ref|YP_001760532.1| peptidoglycan-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811853|gb|ACA86437.1| Peptidoglycan-binding domain 1 protein [Shewanella woodyi ATCC 51908] Length = 461 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 106/375 (28%), Positives = 177/375 (47%), Gaps = 6/375 (1%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPL 102 + R + + + S P S I + + W P + L Sbjct: 82 RSVKIQSRGEGGSDDLYRNVISLEPSSSD--YLPISNRIRYLLWVEQTESWQPLVLDIWL 139 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + +V+ + RL GDL+ + + + V FQ RHGL G++ TL Sbjct: 140 KEGDINPAVKVISRRLNWLGDLNFLDPDNSVMTSELVRGVLNFQRRHGLKQDGVIGPETL 199 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +N+ R L N + L +G R++LVNIPA + V+ G+V L S VIVG Sbjct: 200 RWINLTPKKRAALLAENFISKSSYLS-TIGPRFLLVNIPAFEMVLVDKGQVQLESRVIVG 258 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + RQTP L S I+ ++ NP W +PR+++++D++ +R+D Y+ ++N + + G E+ Sbjct: 259 KPYRQTPRLSSYISNMVLNPSWRVPRTLLRRDLLPKVRKDGAYISEHNFDVFNSAGDEIV 318 Query: 283 VEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +W + F +R Q PGK N + K F + N Y+HDT + LF R + Sbjct: 319 KSPEEWQTLAGGRFPYRLVQKPGKDNTLGRYKFYFKNEYNVYLHDTYDKALFEESNRALS 378 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 SGC+RV + L WL + + + ++ + KT + VH VY +AW + Sbjct: 379 SGCIRVEKVESLANWLASNLVSDKQTWVDLQTERDKTQWFAFDNFLAVHLVYWTAWVDES 438 Query: 401 SIIQFRDDIYGLDNV 415 + QFR+DIY +++ Sbjct: 439 GLAQFRNDIYHQNSM 453 >gi|94501826|ref|ZP_01308338.1| hypothetical protein RED65_14387 [Oceanobacter sp. RED65] gi|94426047|gb|EAT11043.1| hypothetical protein RED65_14387 [Oceanobacter sp. RED65] Length = 628 Score = 335 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 105/396 (26%), Positives = 177/396 (44%), Gaps = 37/396 (9%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQ 112 ++ + +P + + + YQDI G W P PL G+ + Sbjct: 226 LEQGKLHELVKQLVPSHP--GYERLGQELERYQDIAESGLWYPLEIENPLKAGDHHAQIP 283 Query: 113 RLRERLIISGDLDPSK-------------------------GLSVAF--DAYVESAVKLF 145 RL+ L GD S + D A+K + Sbjct: 284 RLKWMLNAYGDYQKSAMDWLVSQTPNSELDPLALERQYRKQPEHQVYRIDENTVRALKHY 343 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q R+GL P+G +D TL +N P +++ +N+ R + L ++ +G Y+LVN+ L Sbjct: 344 QKRNGLLPTGRLDQQTLAQLNEPPYFIAQRIALNMKRWRYLPKE-LGEDYILVNMADFRL 402 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 GK L VI+G+ +TP+L I+ ++ P W +P I +D++ ++DP Y Sbjct: 403 NYFAKGKRQLNMKVIIGKEHLRTPVLAETISSVILAPEWNVPHRIAIRDIIPQAKRDPDY 462 Query: 266 LKDNNIHMIDEKG---KEVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNN 320 L+ +N + + KEV +E +D+N + + Q PG N++ + K F + + Sbjct: 463 LRKHNFKVYEGWSMPPKEVPLENLDFNGFQSRTNTYRLVQAPGDDNSLGNVKFVFPNDKS 522 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDT LF +R +SGC+RV + L LL W I V++ R T PV Sbjct: 523 IYLHDTNHKELFARDMRALSSGCIRVEQPMALAKALLGRQ-NWDEQLISNVIERRYTRPV 581 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 +L VPV+ +Y + W ++ +Q R D+Y D ++ Sbjct: 582 RLKDPVPVYLMYWTTWVNEEGTLQVRRDVYNRDQIN 617 >gi|119899290|ref|YP_934503.1| hypothetical protein azo3000 [Azoarcus sp. BH72] gi|119671703|emb|CAL95616.1| putative periplasmic protein [Azoarcus sp. BH72] Length = 543 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 112/411 (27%), Positives = 182/411 (44%), Gaps = 26/411 (6%) Query: 29 KPIHASVLD-EIINESYHSIVNDRFDN--------FLARVDMGIDSDIPIISKETIAQTE 79 +H +D ++ +Y + FD RV+ + +P + Sbjct: 114 GDVHRGRIDPRSVHAAYAGPAPEAFDADAYLRAALAEDRVEEAARAAVPPLP--LYGALR 171 Query: 80 KAIAFYQDILSRGG----W----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A+A Y+ + + W P P R L G + L RL + GDL L Sbjct: 172 TALAHYRTLAAGADAQAAWSLPLPLPPRRKLEPGQPYAGLALLARRLTLLGDLVADVPLP 231 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 ++ + AVK FQ+RHGL G+V TL + V R+RQ+++ + R++ + Sbjct: 232 PRYEGALVDAVKRFQLRHGLAADGVVGRGTLAELEVAPAARVRQIELTMERLRWTPLLQ- 290 Query: 192 GLRYVLVNIPAASLEAVE--NG--KVGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVI 246 R ++VN+P L A E +G +V R VIVG+ D +TP+ + I F+PYW + Sbjct: 291 APRMIVVNVPEFMLRAYEVRDGRIEVAARMKVIVGKALDTRTPLFAEDMRFIEFSPYWNV 350 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV-EEVDWNSPEPPNFIFRQDPGKI 305 P SI + +++ LR++P Y + G ++ RQ PG Sbjct: 351 PPSIARAELVPRLRREPGYWNAQGFEFVAGDGTANPTLSTAGLDAVLRGTLRIRQRPGPH 410 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA+ K F + +N Y+H TP P LF R + GC+RV ++L ++L+D P W Sbjct: 411 NALGDIKFVFPNNDNIYLHHTPTPQLFARDRRDFSHGCIRVEAPVELARFVLRDQPEWDE 470 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 I E + + +++AT +PV Y +A + F DIYG D + Sbjct: 471 ARIREAMSAGSSKTIRVATPLPVLIAYGTAMVDAEGHAHFFRDIYGHDQLL 521 >gi|312887097|ref|ZP_07746701.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311300409|gb|EFQ77474.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 550 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 108/411 (26%), Positives = 189/411 (45%), Gaps = 25/411 (6%) Query: 12 YCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS 71 +F + L AS + D+ L ++ P+ Sbjct: 153 SQYFAFSRLAW----QGMGTSASDSSRWYVPRKKIAYDQYLDSLLKAPAKSFSANEPVYR 208 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKG 129 + + Y+ + + W + + L G++S +++ ++ RL+ D Sbjct: 209 Q--YELLRHFLKIYRSLDAADEWKPVDTKSVNLKPGDTSAAIKEIKIRLLRLQDFQGD-T 265 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + ++DA + AVK FQ R+GLD SG ++ T+ AMNVP+ +RI+Q+ VN+ R + L Sbjct: 266 FNESYDADLIIAVKQFQYRNGLDTSGRLNKETIMAMNVPLKIRIKQILVNMERARWLPV- 324 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + ++ VNIP +L + V+VG+ QT I + I ++F+PYW IP+S Sbjct: 325 SLNADFLAVNIPEFTLHVYHADSLLWSCPVVVGQKVHQTSIFYGEIKYVVFSPYWNIPQS 384 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I++ +++ L++ P YL + + + + I RQ PG N++ Sbjct: 385 IVRAEVVPGLKKSPDYLLRHQMEI---------------TGYKEGLPIVRQKPGPENSLG 429 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + N Y+HDTP+ LF R + GC+R+ L +LLK+ WS I+ Sbjct: 430 LVKFLFPNSYNIYLHDTPKKSLFGETTRDFSHGCIRIMEPAKLAAFLLKNHNKWSGIKIK 489 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + K V L +VPV Y +A++ + ++ FR DIY LD+ +I Sbjct: 490 RAMNSGKEQYVSLEHKVPVFITYFTAFTDRRGLLNFRKDIYSLDDRLARMI 540 >gi|332187614|ref|ZP_08389350.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332012362|gb|EGI54431.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 510 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 112/397 (28%), Positives = 173/397 (43%), Gaps = 30/397 (7%) Query: 27 VEKPIHASVLD------EIINESYHSIVNDRFDNF--LARVDMGIDSDIPIISKETIAQT 78 +H LD + F + R+ I + P + Sbjct: 117 YAHAVHVGRLDTADFSKDWGIRPQSYDPLPGFADAVRQDRIADWIAALPPPYA--GYDTL 174 Query: 79 EKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 +A Y+ + GGW LP + G+S V +LR+RL + FD Sbjct: 175 VTGLARYRAMAEAGGWTALPANASIPYGSSGPLVAQLRKRLAMED--PAVSQTGATFDEP 232 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + +AV+ Q R+GL+P G V S T+ A+NVPV RIRQ+ N+ R + L +Q + + V Sbjct: 233 LLAAVRRAQRRYGLNPVGTVGSQTIAALNVPVSQRIRQIMANMERWRWLPQQ-LEAKRVQ 291 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNI AA L E L + GR +TP+L S I+ ++ NP W +P SI K++ Sbjct: 292 VNIAAAVLTVFEGDNPVLSMKAVTGRPGNETPMLVSSIHSVVLNPPWNVPSSIANKELWP 351 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 R +P YLK N +ID Q + +A+ K +F + Sbjct: 352 KERANPGYLKRNGFRVID----------------NGDGSKRLQQSSEKSALGRFKFDFPN 395 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 Y+HDTP F+ R + GCVR+ +L +LK TP W ++ + + KT Sbjct: 396 DFAVYLHDTPAQSGFSKFDRLASHGCVRLEKPAELAGLVLKTTPEWQPAAVDATLASGKT 455 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + V V+ +Y +A++ D + FR+D YG D Sbjct: 456 VRASMDEPVAVYLLYWTAFANSDGQVSFREDPYGWDA 492 >gi|83859233|ref|ZP_00952754.1| hypothetical protein OA2633_12550 [Oceanicaulis alexandrii HTCC2633] gi|83852680|gb|EAP90533.1| hypothetical protein OA2633_12550 [Oceanicaulis alexandrii HTCC2633] Length = 506 Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 115/412 (27%), Positives = 174/412 (42%), Gaps = 23/412 (5%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDM------GIDSDIPIIS 71 + L + LD + I + A+ +++ P Sbjct: 79 VWFDYAEDLAFGVVDPRALDS---DWTAPIHDVDLLTAYAQAREGQGIYESLEALAPAHP 135 Query: 72 KETIAQTEKAIAFYQDILSRGGWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 + ++ P L P L G+ V LR RL G L Sbjct: 136 D--YQALRSELVRRLTLVEA---PILVPPGEALSRGDQGPRVDALRARLAQLGLLAGPVA 190 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 FD +ESAV FQ RH L G STL +N RI Q++ NL R + L + Sbjct: 191 AGAPFDGRLESAVMRFQTRHNLAADGEAGPSTLSELNAGDARRINQIRANLERWRWLPAE 250 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G R++ VNI LEA ENG V ++G+ +TP+ ++ I NPYW+ P S Sbjct: 251 -LGERHIRVNIADYRLEAWENGVVARTHETMIGQRYSRTPVFSEDMSIIEINPYWLTP-S 308 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + + R +P Y ++D + G V + DW S + Q PG NAM Sbjct: 309 GLGQRWLRTFRTNPAYALSQGYRLVDLDTGARVDPYQADWAS---RRYRVIQAPGPNNAM 365 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F + +N Y+HDTP LF N R ++SGCVRV + +L +W+L WS + Sbjct: 366 GRVKFLFPNVHNVYIHDTPHRELFANAQRDDSSGCVRVEHPEELAIWILS-AEGWSAQAV 424 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 E + T ++L VPVH +Y +A S + ++F D+Y D + + Sbjct: 425 REAFDSGDTRRIRLRHVVPVHILYFTAVSDEMGRVRFIHDVYDRDERLIAAL 476 >gi|238898896|ref|YP_002924578.1| hypothetical protein HDEF_1835 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466656|gb|ACQ68430.1| conserved hypothetical protein, YkuD and peptidoglycan binding domains [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 530 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 106/361 (29%), Positives = 173/361 (47%), Gaps = 15/361 (4%) Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLII 120 ++S P + + + + + WP+L R L G SS + +++ L Sbjct: 174 YVNSLAPQHPQ--YRKMQTELLKL--LSDNSPWPKLTERVYLREGYSSKDISNVKKILYR 229 Query: 121 SG--DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 G ++ + S + + A+K FQ GL G++ T +NV + R L + Sbjct: 230 LGIGNMSLTDVDSQVYSHDLVMAIKQFQKNRGLPADGIIGIRTRNWLNVSPKILARLLAL 289 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 N+ R++ +LVNIP SL E GK+ L S VIVGR DR+TP++ S IN+I Sbjct: 290 NMQRLRFTPADI--QTGILVNIPDYSLNYYEEGKIRLFSKVIVGRPDRKTPVMQSAINQI 347 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWN--SPEP 293 + NP W +P S+ ++D++ + ++ YL+++N ++ + + E +DW S E Sbjct: 348 VINPDWNVPHSLAREDILPQVIKNIDYLQEHNYRILSSWSQNAEVIDPESIDWENISIEN 407 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + RQ G N + K +R + ++HDTP +F R +SGCVRV+ +L Sbjct: 408 FPYYLRQTLGPNNPLGHYKFNMPNRYSIFLHDTPNKAMFQRYRRAGSSGCVRVQKASELA 467 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LLK T + I +K K+T +PV Y++AW +D QFR DIY D Sbjct: 468 RLLLKKT-GLTDADILNFLKENKSTYRNTRKRIPVWLYYLTAWVSEDGATQFRTDIYHYD 526 Query: 414 N 414 Sbjct: 527 Q 527 >gi|70729780|ref|YP_259519.1| hypothetical protein PFL_2412 [Pseudomonas fluorescens Pf-5] gi|68344079|gb|AAY91685.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 523 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 117/401 (29%), Positives = 180/401 (44%), Gaps = 17/401 (4%) Query: 30 PIHASVLDEIINES---YHSIVNDRFDNFLARVDMGIDSDIPIISKE-----TIAQTEKA 81 +H L + E + +DR LA GI + +A Sbjct: 126 DLHYGRLAQSRFEPMWRAQPLPDDRQSALLAIAVPGIAHIATAFEQARPSLAQYRNLRQA 185 Query: 82 IAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVE 139 A + W + PL V L RL G L A+ + Sbjct: 186 YAHERQQPL-PQWQAVAGGPLLRPDMQDKRVPELALRLYHGGYLQSPVVNPDNAYSGELV 244 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 SAVK FQ+ H L G+V + TL+ MN+ R QL++NL R++ L Q VLVN Sbjct: 245 SAVKNFQLGHSLQADGVVGAGTLKEMNISPAERREQLRINLERLRWL-AQDYEPNLVLVN 303 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 + AA L ++ V ++ VGR +RQTP+L S++ R+ NP W +P +I+++D + + Sbjct: 304 VAAAQLTFYQHDAVVWQTRTQVGRAERQTPLLKSQVTRLTLNPTWTVPPTILKEDKLPEI 363 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 R+D +L N+ ++D G+ + E++DW+ P N + RQ G N + I F + Sbjct: 364 RRDQGFLNRQNLQVLDANGQPLAAEDIDWD--RPGNILLRQGAGPRNPLGRIAIRFPNPF 421 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 + Y+HDTP LF+ R +SGCVRV + L WLL R E++ T T Sbjct: 422 SVYLHDTPSQALFSKGPRAFSSGCVRVEQALQLRDWLLSPAE---RLRTNELLATGLTHE 478 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +LA VP+ Y + + + + DIYG D V + Sbjct: 479 FRLAKPVPILLSYWTVQADSHGQLLYAPDIYGHDQVLSTAL 519 >gi|15888928|ref|NP_354609.1| hypothetical protein Atu1615 [Agrobacterium tumefaciens str. C58] gi|15156702|gb|AAK87394.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 642 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 105/410 (25%), Positives = 171/410 (41%), Gaps = 23/410 (5%) Query: 19 ILPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L + + L + ++ + + V + S P S Sbjct: 225 VLAYVQDTTRGRVDPNRLSGYHDFKRKTVNLAPVLKLAGLSPDVAAYLRSREP--SSAEY 282 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVS----VQRLRERLIISGDLDPSKGL 130 + +A + +P L GNSS V+ + R + + + + Sbjct: 283 LALKAELARLRGEGDTAHTVRVPADLVLKPGNSSADMASVVKAIEHRASPAFKAEHAAIM 342 Query: 131 SVA-----FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIK 184 S + + VK FQ +GL P G++ +T+ AM D +I ++QV + +++ Sbjct: 343 SAYQQTPDYTPDLVDLVKAFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQVR 402 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L +G RYV +N PA +G V+VG QT I + FNPYW Sbjct: 403 WLPA-DLGQRYVFINQPAFMAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYW 461 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P+SII +M+ LR+DP YL + G+ V V+W RQ P Sbjct: 462 GVPQSIIVNEMLPKLRRDPSYLDRLGYEVQVG-GRAVSSSSVNWYGSTNA-VSVRQPPSS 519 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ KI F + + YMHDTP FN +R + GC+R+ + + +L S Sbjct: 520 DNALGDLKILFPNAHAIYMHDTPAKSFFNRDMRALSHGCIRLVDPRRMAAAVL----GSS 575 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + E + K V++ +VPV+ Y +AW KD +QF DD+Y D+ Sbjct: 576 VDKVNEQIAAGKNRAVQVPEKVPVYVAYFTAWPDKDGKVQFFDDVYDRDS 625 >gi|116620897|ref|YP_823053.1| peptidoglycan binding domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116224059|gb|ABJ82768.1| Peptidoglycan-binding domain 1 protein [Candidatus Solibacter usitatus Ellin6076] Length = 401 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 12/371 (3%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIIS 121 P + + +T +A+ Y+ + + +P + G++ L RL + Sbjct: 29 ARLRNPSVPPDEYERTLRALDQYRALAAAPDEVFVPVTGTVKPGDAYSDAPLLIRRLSLL 88 Query: 122 GDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 GDL S ++ + AVK FQ RHGL P G ++++TL +NVP+ R+RQL+++ Sbjct: 89 GDLAADAVPSDSDVYEGELVEAVKRFQSRHGLKPDGRIEATTLGQLNVPLCARVRQLELS 148 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAV----ENGKVGLRSTVIVGR-VDRQTPILHSR 234 R + +++N+P L A L V+VG+ D ++PIL S+ Sbjct: 149 AERWR-RHPYDPTRPAIVLNLPEFRLRAYGGTDAGSDPELEMKVVVGKAPDHKSPILLSQ 207 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF---VEEVDWNSP 291 + ++F PYW +P SI + +++ L+R+DP ++ N ++ +G+ + E Sbjct: 208 LQAVIFRPYWKVPVSIQRNELLPLIRKDPAWVSANRFELVTPQGEVAEEEKLSEETLEDI 267 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 RQ PG N++ K F + YMHDT LF R + GC+RV D Sbjct: 268 STGKLQLRQKPGPKNSLGLVKFLFPNEYGVYMHDTAAHSLFARERRDLSHGCIRVEKPED 327 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L W+L++ W R IEE ++ + VK+ + + +Y +A K+ + F DIYG Sbjct: 328 LAAWVLREQSDWPRERIEEAMQGTEPVSVKVKRPIQIVMMYSTASVMKNGEVHFFRDIYG 387 Query: 412 LDNVHVGIIPL 422 D V + Sbjct: 388 EDAVLEKELAA 398 >gi|4378168|gb|AAD19413.1| unknown [Zymomonas mobilis subsp. mobilis ZM4] Length = 473 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 110/407 (27%), Positives = 186/407 (45%), Gaps = 23/407 (5%) Query: 20 LPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L ++ + AS D + E Y + + + + P S A Sbjct: 74 LDYARAIHSGRLSASDFDKNWGMKPEPYDPWPDFKNAVNNNTLGDWAANLPPPYS--GYA 131 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I D + S FD Sbjct: 132 GLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIE-DKELPDNGSSHFD 190 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 191 AALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWRWLP-RNLPENR 249 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI +K++ Sbjct: 250 IQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIAKKEL 309 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + P YL+ +I E G+ +Q PG N++ K +F Sbjct: 310 WPKEKAHPGYLQAAGFKIIGESGQ---------------GQRLQQKPGPRNSLGQLKFDF 354 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + + Sbjct: 355 PNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSEIDKN 414 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +T V+L V V Y +A+ ++ + FR + Y D + I Sbjct: 415 ETERVRLKQPVAVFLFYWTAFGNGENALSFRSEPYKWDELLAQKIEA 461 >gi|77459598|ref|YP_349105.1| hypothetical protein Pfl01_3376 [Pseudomonas fluorescens Pf0-1] gi|77383601|gb|ABA75114.1| putative exported protein [Pseudomonas fluorescens Pf0-1] Length = 537 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 177/406 (43%), Gaps = 23/406 (5%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS--KETIAQTEKAIAFYQD 87 +H L + + + + + R + +P + +A YQ+ Sbjct: 140 DLHYGRL---LQSHFEPLWHSD-ETPRDRQAELLAIAVPGVHNVPAAFDLARPQLAQYQN 195 Query: 88 IL---------SRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDA 136 + + W + PL V L RL G L + A+ Sbjct: 196 LRHLYAAQRLKALPQWTSVGNGPLLRPDMEDKRVPELARRLYSEGYLNSVAGTPDNAYHG 255 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + AVK FQ H L G+V T+ +N+ R QL+VNL R + + Q M + Sbjct: 256 VLVEAVKSFQANHSLQADGVVGPGTIAELNISPLTRREQLRVNLERFRW-MAQDMEPDGL 314 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 LVN+ AA L + G ++ VGR +RQTP+L SR+ R+ NP W +P +I ++D + Sbjct: 315 LVNVAAAELTLYQGGLPVWQTRTQVGRAERQTPLLKSRVTRLTLNPTWTVPPTIWKEDKL 374 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 +R+D +L N+ ++D G+ + ++DW+ P N + RQD G N + I F Sbjct: 375 PEIRKDQTFLSRQNLQVLDANGQPLAAADIDWD--NPGNILLRQDAGPRNPLGQMVIRFP 432 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + + Y+HDTP LF+ R +SGCVRV + + L LL + + ++ T Sbjct: 433 NPFSVYLHDTPSKALFDKGPRAFSSGCVRVEHPMKLRDLLLSPAE---KARTDTLLATGV 489 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 T +L+ VP+ Y +A + + DIY D+ + + Sbjct: 490 THEFRLSNPVPILMTYWTAQVDGQGRVLYAPDIYSRDSALLAGLDR 535 >gi|119774749|ref|YP_927489.1| peptidoglycan binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767249|gb|ABL99819.1| peptidoglycan-binding domain 1 [Shewanella amazonensis SB2B] Length = 472 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 114/401 (28%), Positives = 187/401 (46%), Gaps = 10/401 (2%) Query: 17 YLILPMGLSLVEKPIHASVLDE--IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 YL L + +D+ + + V ++S + + Sbjct: 65 YLKLKNAWHQLGVHSSPGDMDQSGKMGANRSETVE---SAHHQNATQDLNSRLIALEPND 121 Query: 75 -IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-V 132 T + + + P + L G+S V + +RL + GD++ G + Sbjct: 122 RFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVVAIAKRLWLLGDMETEPGYALS 181 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D V VK FQ RHGL ++ TL +N+ D R +L + + ++ Q + Sbjct: 182 RYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYL-LQSRERQTLP 240 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 YVLVNIPA LE V++G+ + S VIVG+ R+TP + S I+ ++ NP W +PR +++ Sbjct: 241 STYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMR 300 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 D++ +R+D YL + +G+EV + + S F + Q PG NA+ Sbjct: 301 LDVLPKVRKDGSYLSRKGFIVWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGR 360 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K+ F + +N Y+HDTP+ LF+ +R +SGCVRV I +L WL R + Sbjct: 361 FKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKINELSAWLANGRLADPRRWQQT 420 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 + + T L +PVHFVY ++W + QFR+DIYG Sbjct: 421 LQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYG 461 >gi|238763355|ref|ZP_04624319.1| Peptidoglycan-binding domain 1 protein [Yersinia kristensenii ATCC 33638] gi|238698454|gb|EEP91207.1| Peptidoglycan-binding domain 1 protein [Yersinia kristensenii ATCC 33638] Length = 624 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 95/291 (32%), Positives = 145/291 (49%), Gaps = 8/291 (2%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + + AVK FQ HGL G++ + T E +NV R L +N+ R++ L Sbjct: 319 TVTDNVYTPELMEAVKRFQQWHGLSEDGVIGARTREWLNVSPQTRATLLALNIQRLRILP 378 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W +P Sbjct: 379 GRV--DNGIMVNIPNYSLNYYKNGSEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVP 436 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP--PNFIFRQDP 302 S++++D++ R D Y + + ++ + V +DW+ P + RQ P Sbjct: 437 TSLVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAQVVDPSMIDWSMISPNNFPYRLRQAP 496 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 497 GASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-G 555 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 556 WNDARVSSTLKQGDTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYD 606 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 6/117 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETI 75 YL G+ + + + +I+N + + S P + Sbjct: 141 YLHFISGVGANGSVWLYNNVAYKMAMPPATILNRWQQAVHEGNTALYLASLAPQHPQ--Y 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + A+ + R WP++ P L G S + LRE L +G L P Sbjct: 199 EKMHLALKQM--LADRRPWPQMANGPSLRPGQLSDDIPALREILDRTGMLHPVASAP 253 >gi|238749753|ref|ZP_04611258.1| Peptidoglycan-binding domain 1 protein [Yersinia rohdei ATCC 43380] gi|238712408|gb|EEQ04621.1| Peptidoglycan-binding domain 1 protein [Yersinia rohdei ATCC 43380] Length = 622 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 149/294 (50%), Gaps = 8/294 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + + + AVK FQ+ HGL G++ + T E +NV R L +N+ R++ Sbjct: 314 STATVTDNVYTPELVEAVKRFQLWHGLSDDGIIGARTREWLNVSPQTRATLLALNIQRLR 373 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL +NG+ L S VIVGR R+TP++ S +N ++ NP W Sbjct: 374 ILPGRV--DNGIMVNIPNYSLNYYKNGEQVLSSRVIVGRPSRKTPLMSSALNNVVVNPPW 431 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFR 299 +P S+I++D++ R D Y + + ++ V E +DW+ P + R Sbjct: 432 NVPTSLIRQDILPKARYDSSYFQRHGYTVLSGWNNDAEVVDPEMIDWSMISPNHFPYRLR 491 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q+PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 492 QEPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQD 551 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + VPV Y++AW +D QFR DIY D Sbjct: 552 -VGWNDARVSSTLKQGSTTYVNIRERVPVQLYYLTAWVAEDGKPQFRTDIYNYD 604 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 6/117 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETI 75 YL G+ S + + +I+N + S P + Sbjct: 141 YLHFISGVGANGSVWLYSNVPYKMAMPPATILNRWQQAVHEGTTAPYLASLAPQHPQ--Y 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + +A+ + R WP + P L G S + LRE L +G L P G Sbjct: 199 EKMHQALKHM--LADRRPWPLMANGPSLRPGQLSDDIPALREILDRTGMLHPVDGAP 253 >gi|24373669|ref|NP_717712.1| hypothetical protein SO_2109 [Shewanella oneidensis MR-1] gi|24348019|gb|AAN55156.1|AE015652_5 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 502 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 111/413 (26%), Positives = 186/413 (45%), Gaps = 22/413 (5%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 ++ ++ E+I + + + A S I + Sbjct: 90 QRRLNPDEQAELIKMRQQLVRYWHYLDQQAECVEPCISKIFTQQSSYYHAVSLTLYQLMQ 149 Query: 88 ILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPS----------KGLSVAFDA 136 + W L L G S + + RL+I G L + + Sbjct: 150 LEDLTSWELLTLEEKLSPGQQSPLISPIARRLLILGFLPNELRMEPSVGVEANNGMLYGD 209 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + +A+KLFQ +HGL G++ TL +N R + L N++R Q + RY+ Sbjct: 210 ELVTAIKLFQQQHGLLADGVIGKQTLFWLNQSPRARAKLLARNVLRQSIFTAQ-LPARYL 268 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 LVNIPA L+ +E+G+V LRS VIVG+ R TP+L S+I+ ++ NP W +PR+II++D++ Sbjct: 269 LVNIPAFELKLIEDGQVALRSKVIVGKASRPTPLLASQISSVVMNPEWRVPRTIIKRDIL 328 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIE 314 +RQD YL + + G++ +W + + Q PG NA+ K Sbjct: 329 PHIRQDGHYLTEREFDVYAYDGQQAEHSADEWQALASSHFPYQLVQRPGPKNALGRYKFH 388 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEE 370 F + + Y+H T EP LF R +SGC+RV + +L +W L+KD W + H + Sbjct: 389 FDNSFSVYLHGTSEPSLFKRTNRALSSGCIRVEKVEELALWFKTHLVKDQRLWDKLHTD- 447 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 T ++ L+ ++PV VY + W +Q+R+DIY ++ + Sbjct: 448 ---TTQSQWFALSDKLPVFVVYWTVWLDDAGQVQYRNDIYQQESELSHAVSAT 497 >gi|22126641|ref|NP_670064.1| hypothetical protein y2763 [Yersinia pestis KIM 10] gi|45441013|ref|NP_992552.1| hypothetical protein YP_1186 [Yersinia pestis biovar Microtus str. 91001] gi|51595771|ref|YP_069962.1| hypothetical protein YPTB1431 [Yersinia pseudotuberculosis IP 32953] gi|108806698|ref|YP_650614.1| hypothetical protein YPA_0701 [Yersinia pestis Antiqua] gi|108812731|ref|YP_648498.1| hypothetical protein YPN_2570 [Yersinia pestis Nepal516] gi|149366664|ref|ZP_01888698.1| putative exported protein [Yersinia pestis CA88-4125] gi|167470672|ref|ZP_02335376.1| hypothetical protein YpesF_22997 [Yersinia pestis FV-1] gi|170024879|ref|YP_001721384.1| hypothetical protein YPK_2654 [Yersinia pseudotuberculosis YPIII] gi|186894850|ref|YP_001871962.1| hypothetical protein YPTS_1533 [Yersinia pseudotuberculosis PB1/+] gi|218928555|ref|YP_002346430.1| hypothetical protein YPO1407 [Yersinia pestis CO92] gi|229841379|ref|ZP_04461538.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843484|ref|ZP_04463630.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229895858|ref|ZP_04511028.1| predicted carboxypeptidase [Yersinia pestis Pestoides A] gi|229903136|ref|ZP_04518249.1| predicted carboxypeptidase [Yersinia pestis Nepal516] gi|284988613|ref|YP_001401528.2| hypothetical protein YpsIP31758_2563 [Yersinia pseudotuberculosis IP 31758] gi|21959653|gb|AAM86315.1|AE013879_5 putative amidase [Yersinia pestis KIM 10] gi|45435872|gb|AAS61429.1| putative exported protein [Yersinia pestis biovar Microtus str. 91001] gi|51589053|emb|CAH20671.1| putative exported protein [Yersinia pseudotuberculosis IP 32953] gi|108776379|gb|ABG18898.1| hypothetical protein YPN_2570 [Yersinia pestis Nepal516] gi|108778611|gb|ABG12669.1| hypothetical protein YPA_0701 [Yersinia pestis Antiqua] gi|115347166|emb|CAL20059.1| putative exported protein [Yersinia pestis CO92] gi|149291038|gb|EDM41113.1| putative exported protein [Yersinia pestis CA88-4125] gi|169751413|gb|ACA68931.1| Peptidoglycan-binding domain 1 protein [Yersinia pseudotuberculosis YPIII] gi|186697876|gb|ACC88505.1| Peptidoglycan-binding domain 1 protein [Yersinia pseudotuberculosis PB1/+] gi|229678906|gb|EEO75009.1| predicted carboxypeptidase [Yersinia pestis Nepal516] gi|229689831|gb|EEO81892.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229697745|gb|EEO87792.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700781|gb|EEO88810.1| predicted carboxypeptidase [Yersinia pestis Pestoides A] gi|320015731|gb|ADV99302.1| putative carboxypeptidase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 618 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 143/291 (49%), Gaps = 8/291 (2%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 315 TDNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGH 374 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S Sbjct: 375 V--DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTS 432 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWN--SPEPPNFIFRQDPGK 304 ++++D++ R D Y + N ++ + +DW+ SP + RQ PG Sbjct: 433 LVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGA 492 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 493 NNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWN 551 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 552 DARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 602 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +++N + + S P + Sbjct: 141 YLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQ--Y 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + ++A+ + R WP++P P L G S + LRE L +G L P+ + Sbjct: 199 DKMQQALKLM--LADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPV 252 >gi|229591001|ref|YP_002873120.1| hypothetical protein PFLU3558 [Pseudomonas fluorescens SBW25] gi|229362867|emb|CAY49777.1| putative exported protein [Pseudomonas fluorescens SBW25] Length = 532 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 113/405 (27%), Positives = 183/405 (45%), Gaps = 27/405 (6%) Query: 30 PIHASVLDEIINESYHSIVNDR-------------FDNFLARVDMGIDSDIPIISKETIA 76 +H L + + + + + L + D P S + Sbjct: 137 DLHYGRLQQ---SRFEPLWHSQPPTRDPNTEVLAFAAAGLQDMAQAFDQARP--SADLYR 191 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 A A + W + PL G V L RLI G L + + Sbjct: 192 SLRNAYATVRQQPL-PHWDPVGSGPLLRPGMEDPRVPELARRLISGGYL-ATASSGKQYH 249 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + AVK FQ+ H L G++ + T+ +N+ +R QL++NL R + L Q + Sbjct: 250 DELVKAVKAFQLSHSLQADGVIGAGTVAELNISPAIRREQLRINLERFRWL-AQDLEPEG 308 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 VLVN+ AA L ++G ++ + VGR +RQTP+L SRI R+ NP W IP +I+++D Sbjct: 309 VLVNVAAAQLSVYQSGIPVWQTRLQVGRAERQTPLLKSRITRLTLNPTWTIPPTIMREDK 368 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + +R +P+YL+ N+ ++D +G + E++DW P N + RQ+ G N + + F Sbjct: 369 LPAIRLNPEYLRQQNLQVLDAEGHPLAPEQIDW--ARPGNILLRQEAGPRNPLGKIVMRF 426 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y+HDTP LF R +SGCVRV + L L+ R +E++ T Sbjct: 427 PNPYSVYLHDTPSQPLFTKGPRAFSSGCVRVEQPLLLRDLLVSPAE---RARTDELLATG 483 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 T +LAT VPV Y + + + + DIY D V + + Sbjct: 484 VTHEFRLATPVPVLLGYWTVEVDRQGGLVYAPDIYARDLVLMKAM 528 >gi|238785818|ref|ZP_04629788.1| Peptidoglycan-binding domain 1 protein [Yersinia bercovieri ATCC 43970] gi|238713271|gb|EEQ05313.1| Peptidoglycan-binding domain 1 protein [Yersinia bercovieri ATCC 43970] Length = 606 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 150/303 (49%), Gaps = 9/303 (2%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + +AVK FQ+ HGL G++ + T E +NV R L +N+ R++ L Q Sbjct: 303 TDNVYTPELVAAVKRFQLWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRILPGQ 362 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S Sbjct: 363 V--DNGIMVNIPNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTS 420 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP--PNFIFRQDPGK 304 ++++D++ R D Y + + ++ E V +DW+ P + RQ PG Sbjct: 421 LVRQDIVPKARYDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRLRQAPGA 480 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 481 SNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWN 539 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGIIPLP 423 + +K TT V + VPV Y++AW D QFR DIY D V G P Sbjct: 540 DARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYDKTVRSGAQISP 599 Query: 424 EDH 426 + Sbjct: 600 QAE 602 >gi|83858763|ref|ZP_00952285.1| hypothetical protein OA2633_04651 [Oceanicaulis alexandrii HTCC2633] gi|83853586|gb|EAP91438.1| hypothetical protein OA2633_04651 [Oceanicaulis alexandrii HTCC2633] Length = 595 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 114/423 (26%), Positives = 193/423 (45%), Gaps = 46/423 (10%) Query: 47 IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHL 104 ++ A V + + E KA Y + GG+ ++P L L Sbjct: 174 PLDQMLPRAGAGVLDY--EQLSVTHPE-YEDLIKARRTYDGYIKSGGFTQVPEPEGLLEL 230 Query: 105 GNSSVSVQRLRERLIISGD--------------------------LDPSKGLS------- 131 G+SS V+ LR RL G D + +S Sbjct: 231 GDSSPVVETLRVRLREEGYRIERPRRPSLMAESQPPLTQVSFITAPDAAAPVSAADWRRE 290 Query: 132 -VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 +F +E+A++ FQ +GL+ G++ +T+ A+NV + ++ ++ NL R + Sbjct: 291 MQSFSPELEAALRDFQAHNGLEVDGVLGPATIAALNVSAEDKLARIDANLERWR-RASPD 349 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G RYV VNIPA + AV +G L IVG RQTP++ +I I+ NP+W +P SI Sbjct: 350 LGERYVEVNIPAYTARAVRDGDTELEMRSIVGLPARQTPLMSEQIEHIVANPHWYVPESI 409 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPE-PPNFIFRQDPGKINAM 308 + +D ++ +R+D YL+D ++D G+ + E +DW++ QDPG NA+ Sbjct: 410 LVRDKLSHIREDEAYLEDRGYKVVDRDTGEPLSAETIDWSADGIADQVRLIQDPGDNNAL 469 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH- 367 KI F ++++ Y+H TP LF R +SGC+R+ + + W+++ + Sbjct: 470 GELKIMFPNQHSVYLHGTPSRHLFERDQRAFSSGCIRLEDPQAMAAWVVEAVTDQNAEAM 529 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII---PLPE 424 I + V + + + L +PVH VY + D + F D+Y D + +I PL Sbjct: 530 IAQAVASGENQHIALDAPLPVHVVYRTVEVEDDGDVIFHHDVYDRDPALIALIHNSPLTV 589 Query: 425 DHP 427 +P Sbjct: 590 RNP 592 >gi|288941918|ref|YP_003444158.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] gi|288897290|gb|ADC63126.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] Length = 557 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 112/423 (26%), Positives = 181/423 (42%), Gaps = 30/423 (7%) Query: 18 LILPMGLSLVEKPIHASVLDEIINES----YHSIVNDRF------DNFLARVDMGIDSDI 67 L L L LD + + + +R + +D Sbjct: 119 LQLSDALLRYAHHTRYGKLDPVAIDRKWNDRAPLPAERLIADMHGALEAGDLADFLDGRF 178 Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP 126 ++A++ Y LP L LG+ V +LRERL + G + Sbjct: 179 --QKPFWYQDLKRALSHYAGARQLKALEPLPGGSVLSLGSRGERVAQLRERLRLLGYSER 236 Query: 127 SKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLMRIK 184 + FDA + AV+ FQ HGL G V TL +N PVD RI ++++NL R++ Sbjct: 237 TPPDRPETFDAALSEAVRAFQRGHGLGADGAVGPQTLAVINDPVDESRIERIRINLERMR 296 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + + YV V++ V ++ + VIVG+ D QTP+ R++ ++ NP W Sbjct: 297 WLY-EDLPPDYVFVDVADYMAHLVRGREIAWSTRVIVGKEDSQTPMFRDRLDHLVLNPTW 355 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P SI ++ + D I + G+ V N+ + + Q PG Sbjct: 356 TMPVSI---------QKTFTKVSDKYILIDRRTGRRVS----GGNATDYKRYRVVQQPGP 402 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F +R+ YMHDTP LF R + GCVRV+N + LL+++ +W Sbjct: 403 DNALGRVKFMFPNRHAVYMHDTPSKALFGRSARALSHGCVRVQNPMKFAELLLEES-SWD 461 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 R I+ V++ KT V L+ +PV Y++A + + ++ R D+YG D + P Sbjct: 462 RARIDSVLEGAKTRYVNLSEPLPVLLYYLTARADAEGNLRVRRDVYGRDPAVAEALDQPV 521 Query: 425 DHP 427 Sbjct: 522 QRA 524 >gi|238789300|ref|ZP_04633087.1| Peptidoglycan-binding domain 1 protein [Yersinia frederiksenii ATCC 33641] gi|238722632|gb|EEQ14285.1| Peptidoglycan-binding domain 1 protein [Yersinia frederiksenii ATCC 33641] Length = 625 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 145/294 (49%), Gaps = 8/294 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + + + AVK FQ HGL G++ T E +NV R L +N+ R++ Sbjct: 317 ATAAVTDNVYTPELMEAVKRFQQWHGLSDDGVIGIRTREWLNVTPQTRATLLALNIQRLR 376 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 377 ILPGRV--DNGIMVNIPNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPW 434 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFR 299 +P S+I++D++ R D Y + + ++ V ++WN P + R Sbjct: 435 NVPTSLIRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMINWNMISPNNFPYRLR 494 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q+PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 495 QEPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQD 554 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 555 A-GWNDARVSSTLKQGNTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYD 607 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 7/127 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETI 75 YL G+ S + + +IVN + S P + Sbjct: 141 YLHFISGVGANGSVWLYSNVPYKMAMPPATIVNSWQQAVHEGTTAPYLASLAPQHPQ--Y 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + +A+ + R WP++ P L G S + LRE L +G L P +S Sbjct: 199 EKMHQALKQM--LADRRPWPQMANGPSLRPGQLSDDIPALREILDRTGMLHPVASVSAK- 255 Query: 135 DAYVESA 141 D+ V A Sbjct: 256 DSEVIPA 262 >gi|238753519|ref|ZP_04614882.1| Peptidoglycan-binding domain 1 protein [Yersinia ruckeri ATCC 29473] gi|238708472|gb|EEQ00827.1| Peptidoglycan-binding domain 1 protein [Yersinia ruckeri ATCC 29473] Length = 620 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 146/292 (50%), Gaps = 8/292 (2%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + + +AVK FQ GL G++ T E +NV +R L +N+ R++ L Sbjct: 315 SVTDNQYGEELVAAVKRFQQWQGLTDDGVIGPRTREWLNVSPQMRASLLALNIQRLRILP 374 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 Q ++VNIP SL NG L S VIVGR R+TP++ S +N ++ NP W +P Sbjct: 375 GQVT--TGIMVNIPNYSLSYYLNGTEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVP 432 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWN--SPEPPNFIFRQDP 302 S+I++D+M R D Y + + ++ G + +DW+ SP + RQ+P Sbjct: 433 ISLIRQDIMPKARNDASYFQRHGYTVLSGWGNDAEAINPSMIDWSLISPNHFPYRLRQEP 492 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 493 GASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLASMLLQDA-G 551 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W+ + +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 552 WNNERVSSTLKQGNTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYDK 603 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 6/117 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +I+N + + + P + Sbjct: 139 YLHFVSGVGTNGNVWLYSNVPYKMAMPPTAILNRWQQAVREGNTAAYMTALAPQHPQ--Y 196 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + +A+ + WP+ L G S + LRE L SG L+ + Sbjct: 197 EKMHQALKSM--LADNRPWPQFTGAATLRPGQLSDDIPALREILDRSGLLNAAPAAP 251 >gi|320109078|ref|YP_004184668.1| ErfK/YbiS/YcfS/YnhG family protein [Terriglobus saanensis SP1PR4] gi|319927599|gb|ADV84674.1| ErfK/YbiS/YcfS/YnhG family protein [Terriglobus saanensis SP1PR4] Length = 569 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 176/393 (44%), Gaps = 22/393 (5%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW---PELPIRPLHLGNSSVSV 111 VD ++ P T+ AI Y +L + P + + + G Sbjct: 182 DSTDVDDALNDAEPQSP--EYRATKAAIVHYVGLLPQDHTSPVPMVTGKSIEPGKPWAGS 239 Query: 112 QRLRERLIISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 Q L RL + GDLD P + +D + A+K FQ RHG++ G + T+ A+N P+ Sbjct: 240 QALSGRLALFGDLDNVPDTVSASTYDPQLTDALKKFQHRHGIEEDGKIGKDTVNALNTPL 299 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGR--VDR 226 +RI QL L R + L ++ ++VN+P +L A +G V+VG+ + Sbjct: 300 GVRINQLTDTLERWRWLSDEYQNA-AIMVNLPEYTLRAFSDGHHEEFSMRVVVGQSVKEH 358 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP++ + ++F P+W +P SI++ ++ +R YL +N +D KG V Sbjct: 359 RTPVITDHMKYLVFRPFWNVPPSIMKAEIAPHMRASSGYLASHNFETVDNKGNPVSASA- 417 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 I R+ PG N++ K F + N Y+H TP LF+ R + GCVR+ Sbjct: 418 --EQVARAGVIVREKPGPKNSLGLVKFLFPNTFNVYLHSTPATELFSRSKRDFSHGCVRL 475 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRK-TTPVKLATEVPVHFVYISAWSPKDSIIQF 405 + L W+L+D W+ I E ++ + V L+ +P+ Y +A+ +D + F Sbjct: 476 QEPEKLAAWVLRDNSKWNDDSIHEAMENGQDNKTVLLSHPIPIVIFYATAYPGEDGDMHF 535 Query: 406 RDDIYGLDNVHVGII-------PLPEDHPIDSD 431 DIYG D + P +++D Sbjct: 536 FTDIYGYDKELEDALHHGPPYPKAPIAEKVEAD 568 >gi|238792383|ref|ZP_04636017.1| Peptidoglycan-binding domain 1 protein [Yersinia intermedia ATCC 29909] gi|238728309|gb|EEQ19829.1| Peptidoglycan-binding domain 1 protein [Yersinia intermedia ATCC 29909] Length = 603 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 100/303 (33%), Positives = 147/303 (48%), Gaps = 9/303 (2%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AVK FQ HGL G++ T E +NV R L +N+ R++ L + Sbjct: 300 TDNIYTPELVEAVKRFQQWHGLSDDGVIGVRTREWLNVSPQTRATLLALNIQRLRILPGR 359 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S Sbjct: 360 V--DNGIMVNIPNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTS 417 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP--PNFIFRQDPGK 304 ++++D++ R D Y + + ++ E V +DW+ P + RQ PG Sbjct: 418 LVRQDIVPKARYDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRLRQAPGA 477 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 478 SNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWN 536 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGIIPLP 423 + +K TT V + VPV Y++AW D QFR DIY D V G P Sbjct: 537 DARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYDKTVRSGAQISP 596 Query: 424 EDH 426 + Sbjct: 597 QAE 599 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 6/118 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +I+N + + S P + Sbjct: 119 YLHFISGVGANGSVWLYSNVPYKMAMPPATILNRWQQAVREGTTAPYLASLAPQHPQ--Y 176 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + +A+ + R WP++ P L G S + LR+ L +G L P Sbjct: 177 DKMHQALKLM--LADRQPWPQMSNGPSLRPGQLSDDIPALRKILDRTGMLHPVASQPA 232 >gi|149911942|ref|ZP_01900540.1| hypothetical protein PE36_11037 [Moritella sp. PE36] gi|149804989|gb|EDM65018.1| hypothetical protein PE36_11037 [Moritella sp. PE36] Length = 409 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 114/355 (32%), Positives = 182/355 (51%), Gaps = 14/355 (3%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIIS 121 SD P+ K + ++ + + W ++ R LH+G+SS +V + RLI+ Sbjct: 58 AVSDAPVSKKVLQFSSRA--SYLNWLSVQYSWEDIALSRLLHIGDSSAAVHEIHSRLILL 115 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 GD + S S + + +AV+ FQ RHGL ++ TL+ +N+ R L+ N+ Sbjct: 116 GDSEESLRFSDVYTVEIAAAVRNFQRRHGLKADAIIGPDTLKWLNINPQRRAELLRQNME 175 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K + RY+LVNIPA L +NG++ LRS VIVG+ + TPIL S I+ ++ N Sbjct: 176 E-KIHFMANLSDRYLLVNIPAYELLLSDNGEIALRSRVIVGKPKKPTPILTSEISSMVIN 234 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR-- 299 P W +PRSI++ D++ ++ + ++ N + + + + + +W F +R Sbjct: 235 PSWRVPRSILEDDLLPKVKMNGEFFSQRNFKVFNYQNQTIEKSPQEWQKLAYGQFPYRLE 294 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW---- 355 Q PG NA+ K F + + Y+HDT P LF+N R +SGC+R+ + +L W Sbjct: 295 QMPGTQNALGRYKFYFPNDFSVYLHDTSNPQLFSNANRALSSGCIRIEKVDELANWIANS 354 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L+ + P WSR I T L +PVH VY +AW + + QFRDDIY Sbjct: 355 LVDNKPLWSRLKI----NRETTKWFPLNDVLPVHLVYWTAWIDDNGLSQFRDDIY 405 >gi|238757635|ref|ZP_04618819.1| Peptidoglycan-binding domain 1 protein [Yersinia aldovae ATCC 35236] gi|238704140|gb|EEP96673.1| Peptidoglycan-binding domain 1 protein [Yersinia aldovae ATCC 35236] Length = 603 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 108/406 (26%), Positives = 172/406 (42%), Gaps = 24/406 (5%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA---- 76 P L + L + I + + + + IP+ + A Sbjct: 193 PWPLMSNGPSLRPGQLSDDIPALREILARNGMLQPVVATPVKAPEVIPVDNPAVAAVNDD 252 Query: 77 ---QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 EK+ A ++ + P+ G S S L + + Sbjct: 253 LSVDEEKSRAQAHSLVVSPSAAPVTDVPVAKGIVSPSTAPL---------ITTTPITDNV 303 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + +AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 304 YTPELVAAVKRFQQWQGLTDDGVIGVRTREWLNVSPQTRATLLALNIQRLRILPGHV--D 361 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S++++ Sbjct: 362 NGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQ 421 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSP--EPPNFIFRQDPGKINAM 308 D++ R D Y + + ++ + V +DW+ + RQ PG N++ Sbjct: 422 DIVPKARYDSGYFQRHGYTVLSGWSNDAQVVDPSMIDWSMISPNNFPYRLRQAPGSSNSL 481 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + Sbjct: 482 GRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARV 540 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 541 SSTLKQGDTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYDK 586 >gi|238795867|ref|ZP_04639380.1| Peptidoglycan-binding domain 1 protein [Yersinia mollaretii ATCC 43969] gi|238720330|gb|EEQ12133.1| Peptidoglycan-binding domain 1 protein [Yersinia mollaretii ATCC 43969] Length = 574 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 9/308 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + + + AVK FQ+ HGL G++ + T E +N+ R L +N+ R++ Sbjct: 266 STTTLTDNIYTPELVEAVKRFQLWHGLSDDGVIGARTREWLNISPQTRATLLALNIQRLR 325 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 326 ILPGKV--DNGIMVNIPNYSLNYYKNGTEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPW 383 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP--PNFIFR 299 +P S++++D++ R D Y + + ++ E V +DW+ P + R Sbjct: 384 NVPTSLVRQDIVPKARYDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRLR 443 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 444 QAPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQD 503 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVG 418 W+ + VK TT V + VPV Y++AW D QFR DIY D V G Sbjct: 504 A-GWNDARVSSTVKQGDTTYVNIRQRVPVQLYYLTAWVADDGRPQFRTDIYNYDKTVRSG 562 Query: 419 IIPLPEDH 426 P+ Sbjct: 563 AQISPQAE 570 >gi|145599560|ref|YP_001163636.1| hypothetical protein YPDSF_2288 [Yersinia pestis Pestoides F] gi|145211256|gb|ABP40663.1| hypothetical protein YPDSF_2288 [Yersinia pestis Pestoides F] Length = 618 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 143/291 (49%), Gaps = 8/291 (2%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 315 TDNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGH 374 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S Sbjct: 375 V--DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTS 432 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWN--SPEPPNFIFRQDPGK 304 ++++D++ R D Y + N ++ + +DW+ SP + RQ PG Sbjct: 433 LVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGA 492 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 493 NNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWN 551 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 552 DALVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 602 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +++N + + S P + Sbjct: 141 YLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQ--Y 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + ++A+ + R WP++P P L G S + LRE L +G L P+ + Sbjct: 199 DKMQQALKLM--LADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPV 252 >gi|332162190|ref|YP_004298767.1| hypothetical protein YE105_C2568 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606244|emb|CBY27742.1| L,D-transpeptidase YcbB [Yersinia enterocolitica subsp. palearctica Y11] gi|325666420|gb|ADZ43064.1| hypothetical protein YE105_C2568 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 623 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 144/293 (49%), Gaps = 8/293 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AVK FQ HGL G++ + T E +NV R L +N+ R++ Sbjct: 316 TATVTDNVYTPELMEAVKRFQRWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRI 375 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 376 LPGRV--DNGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWN 433 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFRQ 300 +P S++++D++ R D Y + + ++ V +DW+ P + RQ Sbjct: 434 VPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMIDWSMISPNNFPYRLRQ 493 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 494 APGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA 553 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + VPV Y++AW D QFR DIY D Sbjct: 554 -GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYD 605 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 6/117 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETI 75 YL G+ S + + +I+N + S P + Sbjct: 141 YLHFISGVGANGSVWLYSNVPYKMAMPPATILNRWQQAVHEGTTAPYLASLAPQHPQ--Y 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + +A+ + R WP++ P L G S + LRE L +G L P Sbjct: 199 EKMHQALKEM--LADRRPWPQMANGPSLRPGQLSDDIPALREILDRTGMLHPVVSAP 253 >gi|326424107|ref|NP_761768.2| L,D-transpeptidase YcbB [Vibrio vulnificus CMCP6] gi|319999488|gb|AAO11295.2| L,D-transpeptidase YcbB [Vibrio vulnificus CMCP6] Length = 535 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 171/395 (43%), Gaps = 36/395 (9%) Query: 27 VEKPIHASVLDEIINESYHSIV-NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + I A L + + + +F N +R+ D +P+ + Sbjct: 166 LSADIQAGYLATFVRSLRSPLQRHQQFANRYSRLLKARDHAVPLFHQ------------- 212 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKL 144 + L LG+ L +RL + G +D +E AVK Sbjct: 213 -------------VGLLKLGDKLPDRANLIKRLEVVGLETSHLKRDIKYYDTQLELAVKQ 259 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G+V TL+ +N+ R+ + +N R + E++ VLVN+P Sbjct: 260 FQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEER--DLLVLVNVPGYE 317 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ KD++ ++ D Sbjct: 318 MKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVKDILPKVKYDQS 377 Query: 265 YLKDNNIHMIDEKGKE--VFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +L NI +++ + V + +DW + + RQ G NA+ K ++ Sbjct: 378 FLTKQNIEIVEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALGLYKFNIPNKRA 437 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 ++HDTP LF R +SGCVRV+N + LLK + T + Sbjct: 438 IFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLKTQ-GLEEELSNLATRQEANTMI 496 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L +PVH +Y + W + + +RDDIY D V Sbjct: 497 PLKRRIPVHIIYQTVWFEGE-ELNYRDDIYQYDLV 530 >gi|162419158|ref|YP_001606446.1| hypothetical protein YpAngola_A1973 [Yersinia pestis Angola] gi|166211229|ref|ZP_02237264.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167424284|ref|ZP_02316037.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|162351973|gb|ABX85921.1| conserved hypothetical protein [Yersinia pestis Angola] gi|166207000|gb|EDR51480.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167057133|gb|EDR66896.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 596 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 143/291 (49%), Gaps = 8/291 (2%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 293 TDNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGH 352 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S Sbjct: 353 V--DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTS 410 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWN--SPEPPNFIFRQDPGK 304 ++++D++ R D Y + N ++ + +DW+ SP + RQ PG Sbjct: 411 LVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGA 470 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 471 NNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWN 529 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 530 DARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 580 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +++N + + S P + Sbjct: 119 YLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQ--Y 176 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + ++A+ + R WP++P P L G S + LRE L +G L P+ + Sbjct: 177 DKMQQALKLM--LADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPV 230 >gi|123441868|ref|YP_001005851.1| hypothetical protein YE1557 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088829|emb|CAL11635.1| putative exported protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 623 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 144/293 (49%), Gaps = 8/293 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AVK FQ HGL G++ + T E +NV R L +N+ R++ Sbjct: 316 TATVTDNVYTPELMEAVKRFQRWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRI 375 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 376 LPGRV--DNGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWN 433 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFRQ 300 +P S++++D++ R D Y + + ++ V +DW+ P + RQ Sbjct: 434 VPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMIDWSMISPNNFPYRLRQ 493 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 494 APGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA 553 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + VPV Y++AW D QFR DIY D Sbjct: 554 -GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYD 605 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 5/117 (4%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETI 75 YL G+ S + + +I+N + S P + Sbjct: 141 YLHFISGVGANGSVWLYSNVPYKMAMPPATILNRWQQAVHEGTTAPYLASLAPPQHPQ-Y 199 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + +A+ + R WP++ P L G S + LRE L +G L P Sbjct: 200 EKMHQALKEM--LADRRPWPQMANGPSLRPGQLSDDIPALREILDRTGMLHPVVPAP 254 >gi|320156749|ref|YP_004189128.1| L,D-transpeptidase YcbB [Vibrio vulnificus MO6-24/O] gi|319932061|gb|ADV86925.1| L,D-transpeptidase YcbB [Vibrio vulnificus MO6-24/O] Length = 518 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 171/395 (43%), Gaps = 36/395 (9%) Query: 27 VEKPIHASVLDEIINESYHSIV-NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + I A L + + + +F N +R+ D +P+ + Sbjct: 149 LSADIQAGYLATFVRSLRSPLQRHQQFANRYSRLLKARDHAVPLFHQ------------- 195 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKL 144 + L LG+ L +RL + G +D +E AVK Sbjct: 196 -------------VGLLKLGDKLPDRANLIKRLEVVGLETSHLKRDIKYYDTQLELAVKQ 242 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G+V TL+ +N+ R+ + +N R + E++ VLVN+P Sbjct: 243 FQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEER--DLLVLVNVPGYE 300 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ KD++ ++ D Sbjct: 301 MKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVKDILPKVKYDQS 360 Query: 265 YLKDNNIHMIDEKGKE--VFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +L NI +++ + V + +DW + + RQ G NA+ K ++ Sbjct: 361 FLTKQNIEIVEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALGLYKFNIPNKRA 420 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 ++HDTP LF R +SGCVRV+N + LLK + T + Sbjct: 421 IFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLKTQ-GLEEELSNLATRQEANTMI 479 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L +PVH +Y + W + + +RDDIY D V Sbjct: 480 PLKRRIPVHIIYQTVWFEGE-ELNYRDDIYQYDLV 513 >gi|165924622|ref|ZP_02220454.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938929|ref|ZP_02227482.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009934|ref|ZP_02230832.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|167399976|ref|ZP_02305494.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419803|ref|ZP_02311556.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|270486929|ref|ZP_06204003.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294503394|ref|YP_003567456.1| hypothetical protein YPZ3_1284 [Yersinia pestis Z176003] gi|152960577|gb|ABS48038.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 31758] gi|165913076|gb|EDR31700.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923682|gb|EDR40814.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991330|gb|EDR43631.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166962544|gb|EDR58565.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050684|gb|EDR62092.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|262365029|gb|ACY61586.1| hypothetical protein YPD8_0898 [Yersinia pestis D182038] gi|270335433|gb|EFA46210.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294353853|gb|ADE64194.1| hypothetical protein YPZ3_1284 [Yersinia pestis Z176003] Length = 569 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 143/291 (49%), Gaps = 8/291 (2%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 266 TDNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGH 325 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S Sbjct: 326 V--DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTS 383 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWN--SPEPPNFIFRQDPGK 304 ++++D++ R D Y + N ++ + +DW+ SP + RQ PG Sbjct: 384 LVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGA 443 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 444 NNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWN 502 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 503 DARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 553 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +++N + + S P + Sbjct: 92 YLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQ--Y 149 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + ++A+ + R WP++P P L G S + LRE L +G L P+ + Sbjct: 150 DKMQQALKLM--LADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPV 203 >gi|113970169|ref|YP_733962.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-4] gi|113884853|gb|ABI38905.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-4] Length = 542 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 107/419 (25%), Positives = 178/419 (42%), Gaps = 43/419 (10%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKE------TIAQTEKAIAFYQDILSRGGWPELP- 98 + + DN+ +D + P S + + W L Sbjct: 119 RQMQLQLDNYWRYLDTQAECITPCRSAALMPTDAYFRAVVLKLKQLMALAESSSWETLIL 178 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLD--------------------------------- 125 L G S + + +RL + G L Sbjct: 179 EDKLSPGQESPLIALIVQRLFLLGFLADKPSPVSETAADPEALSPDVTTHPESKAYPAQG 238 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + ++ + +A+K+FQ +HGL G++ TL +N R + L N +R + Sbjct: 239 SADKNPMLYNDELVAAIKVFQTQHGLQADGVIGKQTLYWLNQSPYARAQLLAKNTLRQQI 298 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + + Y+++N+PA L+ VE GKV L S VIVG+ R TP+L S I+ ++ NP W Sbjct: 299 FT-RTLPASYLVINVPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSHISSVVVNPQWR 357 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPG 303 +PR+I+++D++ +RQD YL+D + D G V +W + + Q PG Sbjct: 358 VPRTIVRRDILPHIRQDGHYLQDRGFDVYDYDGARVEHSPQEWQELASSHFPYRLVQRPG 417 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ K F + + Y+H T EP LF R +SGC+RV + +L W Sbjct: 418 AKNALGRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEELARWFQTHLVKD 477 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +R + T ++ L+ +PV+ VY +AW IQ+R+DIY L+ +P Sbjct: 478 TRLWDKLTPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRNDIYHLEAEFTQAVPA 536 >gi|37680299|ref|NP_934908.1| hypothetical protein VV2115 [Vibrio vulnificus YJ016] gi|37199046|dbj|BAC94879.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 535 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 171/395 (43%), Gaps = 36/395 (9%) Query: 27 VEKPIHASVLDEIINESYHSIV-NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + I A L + + + +F N +R+ D +P+ + Sbjct: 166 LSADIQAGYLATFVRSLRSPLQRHQQFANRYSRLLKARDHAVPLFHQ------------- 212 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKL 144 + L LG+ L +RL + G +D +E AVK Sbjct: 213 -------------VGLLKLGDKLPDRANLIKRLEVVGLETSHLKRDIKYYDTQLELAVKQ 259 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G+V TL+ +N+ R+ + +N R + E++ VLVN+P Sbjct: 260 FQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEER--DLLVLVNVPGYE 317 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ KD++ ++ D Sbjct: 318 MKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVKDILPKVKYDQS 377 Query: 265 YLKDNNIHMIDEKGKE--VFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +L NI +I+ + V + +DW + + RQ G NA+ K ++ Sbjct: 378 FLTKQNIEIIEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALGLYKFNIPNKRA 437 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 ++HDTP LF R +SGCVRV+N + LLK + T + Sbjct: 438 IFLHDTPSQSLFQEDSRAFSSGCVRVQNADQFALQLLKTQ-GLEEELSNLATRQEANTMI 496 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L +PVH +Y + W + + +RDDIY D V Sbjct: 497 PLKRRIPVHIIYQTVWFEGE-ELNYRDDIYQYDLV 530 >gi|322832248|ref|YP_004212275.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] gi|321167449|gb|ADW73148.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] Length = 616 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 93/308 (30%), Positives = 146/308 (47%), Gaps = 9/308 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 P + + AVK FQ GL+ G++ T + +N LR L +N+ R++ Sbjct: 308 APVAVADNQYTPDLVEAVKRFQKWQGLEADGIIGGRTRQWLNASPQLRATLLALNIQRLR 367 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L ++VNIP L NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 368 ILPGNV--NTGIMVNIPNYQLTYYLNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFR 299 +P +++++D++ +P Y + + ++ + +DW P + R Sbjct: 426 NVPTTLVREDIVPKAMNNPGYFQQHGYQVLSGWSNDAEVIDPSMIDWAMISPNHFPYRIR 485 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF+ +R +SGCVRV +L LL+D Sbjct: 486 QAPGVSNSLGRYKFNMPSSDAIYLHDTPNHNLFSKDIRALSSGCVRVNKASELANMLLQD 545 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVG 418 W+ I ++ TT V + +PV Y++AW D QFR DIY D+ V G Sbjct: 546 A-GWNDTRISSALQGGNTTYVAIRHHIPVKLFYLTAWVADDGKPQFRTDIYNYDSTVRSG 604 Query: 419 IIPLPEDH 426 LP+ Sbjct: 605 AQILPQAE 612 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 6/119 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + S + +++N + + + P Sbjct: 133 YLQFTSSVEANGDKWLYSATPYKMTTPSLTVINQWQLAVRQGNTSHYLSTLAPQHP--YY 190 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + A+ + WP + L S V LRE L +G + S + Sbjct: 191 TKMHDALKIM--LTDNRPWPVMTGSASLRPDQISDDVPALREILTRTGMMVASPEENKV 247 >gi|325293005|ref|YP_004278869.1| hypothetical protein AGROH133_06435 [Agrobacterium sp. H13-3] gi|325060858|gb|ADY64549.1| hypothetical protein AGROH133_06435 [Agrobacterium sp. H13-3] Length = 645 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 104/410 (25%), Positives = 172/410 (41%), Gaps = 23/410 (5%) Query: 19 ILPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L + + L + ++ + + + + S P S Sbjct: 228 VLAYVQDTTRGRVDPNRLSGYHDFKRKTVNLAPVLKLAGLSPDIAAYLRSREP--SNAEY 285 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVS----VQRLRERLIISGDLDPSKGL 130 + +A + ++P L GNSS V+ + R + + + + Sbjct: 286 LALKAELARLRSEGDAANTVKVPADLVLKPGNSSGDMASVVKAIEHRASPAFKAEHAAII 345 Query: 131 SVA-----FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIK 184 S + + VK FQ +GL G++ +T+ AM D RI ++QV + +I+ Sbjct: 346 SGYQQTPDYTPDLVDLVKAFQSENGLKADGVIGRATVRAMVGESNDARIAKVQVAMEQIR 405 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L +G RYVL+N PA +G+ V+VG QT I + FNPYW Sbjct: 406 WLPA-DLGQRYVLINQPAFMAYYHNDGQEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYW 464 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P+SII +M+ LR+DP YL + G+ V V+W RQ P Sbjct: 465 GVPQSIIVNEMLPKLRRDPSYLDRLGYEVQVG-GRAVSSTSVNWFGSTNA-VSVRQPPSS 522 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ KI F + + YMHDTP FN +R + GC+R+ + + +L S Sbjct: 523 DNALGDLKILFPNAHAIYMHDTPAKSFFNRDMRALSHGCIRLVDPRRMAAAVL----GTS 578 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + E + K V++ ++PV+ Y +AW K +QF DD+Y D+ Sbjct: 579 VDKVNEQIAAGKNRAVQVPVKIPVYVAYFTAWPDKAGKVQFFDDVYDRDS 628 >gi|310767192|gb|ADP12142.1| hypothetical protein EJP617_24610 [Erwinia sp. Ejp617] Length = 615 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 117/470 (24%), Positives = 191/470 (40%), Gaps = 77/470 (16%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + S + + +++N + ++ + S P + Sbjct: 134 YLQFTSSAPSKGEAWLYSTVPYRLEAPSMTVINQWQQALASGNLNGFVRSLAPQHPQ--Y 191 Query: 76 AQTEKAIAFY----------------------------QDILSRGGWPELPIRPLHL--- 104 A+ +A+ +DIL R G P+ Sbjct: 192 ARMHQALKSLLADTRPWPRIVDKQTLRPGQISNDVSALRDILQRNGMMSSANEPVKPAAE 251 Query: 105 --GNSS-VSV---------QRLRERL----------IISGDLDPSKGLSVAFD------- 135 G V L+ R +SGD+ S F+ Sbjct: 252 VVGAVDAPLVHDDDNAQPDANLQTRADNNRVVSPSANLSGDVTDSAAAPNVFNGQAALGS 311 Query: 136 ------AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+K FQ GL+ G + + T E +NV R L +N+ R++ L + Sbjct: 312 QANTYSPQLVEALKRFQRWQGLEADGAIGTRTREWLNVSPQQRATLLALNIQRLRLLPDD 371 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 372 M--QNGIMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTT 429 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP--PNFIFRQDPGK 304 +++KD++ +++DP YL + ++ E V ++W++ + RQ PG Sbjct: 430 LVRKDIVPKVKRDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSTVSAASFPYRIRQAPGA 489 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 490 TNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLRD-VGWN 548 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 I +K T V + +PV+ Y++AW +D Q+R DIY DN Sbjct: 549 DARISGTLKEGNTRFVPIRQRIPVNLYYLTAWVAEDGQPQYRTDIYNYDN 598 >gi|117920334|ref|YP_869526.1| peptidoglycan binding domain-containing protein [Shewanella sp. ANA-3] gi|117612666|gb|ABK48120.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. ANA-3] Length = 558 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 112/439 (25%), Positives = 180/439 (41%), Gaps = 59/439 (13%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKE------TIAQTEKAIAFYQDILSRGGWP 95 + + + DN+ +D + P +S + + W Sbjct: 115 QLKLRQMQLQLDNYWQYLDAQAECTAPCLSAALIPKDTYFRAVVLKLKQLMALAESSSWE 174 Query: 96 ELP-IRPLHLGNSSVSVQRLRERLIISGDLD----------------------------- 125 L L G S + + +RL + G L Sbjct: 175 TLILEDKLSPGQESPLIAPIAQRLFLLGFLAEMPSTASESVADEAALPVSELGSEPTIEP 234 Query: 126 --------------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + S+ +D + A+K FQ +HGL G++ TL + Sbjct: 235 DIISPDATTHAGTVARTEQASTDNNSMPYDDELVRAIKNFQTQHGLQADGVIGKQTLYWL 294 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 N R + L N +R + L + + Y+++NIPA L+ VE GKV L S VIVG+ Sbjct: 295 NQSPYARAKLLAKNTLRQQ-LFTRTLPASYLVINIPAFELQFVEAGKVILNSKVIVGKAS 353 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 R TP+L S I+ ++ NP W +PR+I+++D+M +RQD YL+D + D G V Sbjct: 354 RPTPLLSSHISSVVLNPQWRVPRTIVRRDIMPHIRQDGHYLQDRGFDVYDYDGARVEHSP 413 Query: 286 VDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 +W + + Q PG NA+ K F + + Y+H T EP LF R +SGC Sbjct: 414 QEWQELASSHFPYRLVQRPGAKNALGRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGC 473 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 +RV + +L W +R + T ++ L+ +PV+ VY +AW I Sbjct: 474 IRVEKVEELARWFQTHLVKDTRLWDKLTPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQI 533 Query: 404 QFRDDIYGLDNVHVGIIPL 422 Q+R+DIY L+ +P Sbjct: 534 QYRNDIYHLEVEFTQAVPA 552 >gi|114047641|ref|YP_738191.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-7] gi|113889083|gb|ABI43134.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-7] Length = 558 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 109/435 (25%), Positives = 177/435 (40%), Gaps = 59/435 (13%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKE------TIAQTEKAIAFYQDILSRGGWPELP- 98 + + DN+ +D + P S + + W L Sbjct: 119 RQMQLQLDNYWQYLDTQAECITPCRSAALMPTDAYFRAVVLKLKQLMALAESSSWETLIL 178 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP-------------------------------- 126 L G S + + +RL + G L Sbjct: 179 EDKLSPGQESPLIAPIAQRLFLLGFLAEMPSTASESVVDKAALPVSELGSEPVIKSDIIS 238 Query: 127 -----------------SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + + +D + A+K FQ +HGL G++ TL +N Sbjct: 239 PEATNQAETVARTEQAATDNNPMRYDDELVRAIKNFQTQHGLQADGVIGKQTLYWLNQSP 298 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 R + L N +R++ + + Y+++NIPA L+ VE GKV L S VIVG+ R TP Sbjct: 299 YARAKLLAKNTLRLQIFT-RTLPASYLVINIPAFELQFVEAGKVILNSKVIVGKASRPTP 357 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +L S I+ ++ NP W +PR+I+++D++ +RQD YL+D + D G V +W Sbjct: 358 LLSSHISSVVVNPQWRVPRTIVRRDILPHIRQDGHYLQDRGFDVYDYDGARVEHSPQEWQ 417 Query: 290 --SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + + Q PG NA+ K F + + Y+H T EP LF R +SGC+RV Sbjct: 418 ELASSHFPYRLVQRPGAKNALGRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVE 477 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + +L W +R + T ++ L+ +PV+ VY +AW IQ+R+ Sbjct: 478 KVEELARWFQTHLVKDTRLWDKLTPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRN 537 Query: 408 DIYGLDNVHVGIIPL 422 DIY L+ +P Sbjct: 538 DIYHLEAEFSQAVPA 552 >gi|258546017|ref|ZP_05706251.1| peptidoglycan binding protein [Cardiobacterium hominis ATCC 15826] gi|258518746|gb|EEV87605.1| peptidoglycan binding protein [Cardiobacterium hominis ATCC 15826] Length = 599 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 102/329 (31%), Positives = 159/329 (48%), Gaps = 13/329 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 LP L G + +V LRE+L + G S FD + AV +Q HGL Sbjct: 272 QPLPKVTLKQGMNHEAVAILREKLGA----PATDGDSTYFDGALAEAVTAYQQSHGLKAD 327 Query: 155 GMVDSSTLEAMNVPVD-----LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 G+V T +N + +L +N+ R++ + Q MG YVLVNIP+ ++ Sbjct: 328 GIVSGKTRNLLNGNKASSGGNASVDRLMINMERLRWMP-QDMGESYVLVNIPSYYVKMYR 386 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + S +VG+ DRQTP ++ I+ +P W +P +I++KD + LR +P Sbjct: 387 GSEEIYASKAVVGQRDRQTPAFTDKLRHIVMSPTWTVPPTIMKKDKINKLRSNPGAFD-G 445 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + G+ V VDW++P + RQ PG NA+ K F +++ Y+HDTP Sbjct: 446 SFEAVVG-GRVVRPSAVDWSAPGATGYRLRQKPGARNALGRVKFLFPNKHAIYLHDTPSK 504 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVR++ + LL++T WS I++ + K V + P++ Sbjct: 505 SLFGRNDRALSSGCVRLQKPEEFANILLQNT-NWSAERIKKAMNQEKEQWVNTPEQTPIY 563 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 VY + WS D IQ +DIYG D + Sbjct: 564 LVYWTTWSDPDGKIQTANDIYGKDGALLQ 592 >gi|188534256|ref|YP_001908053.1| hypothetical protein ETA_21290 [Erwinia tasmaniensis Et1/99] gi|188029298|emb|CAO97175.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 612 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 96/291 (32%), Positives = 146/291 (50%), Gaps = 8/291 (2%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + + + A+K FQ GL+ G + T E +NV R L +N+ R++ L Sbjct: 307 GNAANTYTPQLVEALKRFQRWQGLEADGAIGQRTREWLNVSPQQRATLLALNIQRLRLLP 366 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ NP W +P Sbjct: 367 DDMHNG--IMVNIPNYSLAYYVNGREILASRVIVGRPDRKTPLMRSALNNVVLNPPWNVP 424 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP--PNFIFRQDP 302 ++I+KD++ ++QDP YL + ++ + V +DW+ + RQ P Sbjct: 425 TTLIRKDIVPKVKQDPAYLYKHGYTLLSGWSSEAQVVDPSMIDWSMVSAASFPYRIRQAP 484 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 485 GPTNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLRD-VG 543 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +K T V + +PV+ Y++AW D QFR DIY D Sbjct: 544 WNDTRISSTLKEGDTRFVSIRHRIPVNLYYLTAWVADDGQPQFRTDIYNYD 594 >gi|312961568|ref|ZP_07776069.1| hypothetical protein PFWH6_3485 [Pseudomonas fluorescens WH6] gi|311284247|gb|EFQ62827.1| hypothetical protein PFWH6_3485 [Pseudomonas fluorescens WH6] Length = 533 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 112/401 (27%), Positives = 180/401 (44%), Gaps = 17/401 (4%) Query: 30 PIHASVLDEIINES--------YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 +H L + E + + DM D S + Sbjct: 136 DLHFGRLQQSRFEPLWHSQPPARDPDTDVLALAAVGLQDMAQAFDQARPSADLYRSLRNV 195 Query: 82 IAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVE 139 + + W + PL G V L RL G L +G + + Sbjct: 196 YSSMRQQPL-PHWDPVGSGPLLRPGMEDPRVPELARRLHSGGYLPAERQGNGKQYSPELV 254 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 SAVK FQ+ H L G++ + T+ +N+ +R QL++NL R + L + + VLVN Sbjct: 255 SAVKAFQLSHSLQSDGVIGAGTVAELNISPAMRREQLRINLERFRWL-AKDLEPEGVLVN 313 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 + AA L ++G ++ + VGR +RQTP+L SRI R+ NP W IP +I+++D + + Sbjct: 314 VAAAQLSVYQSGIPVWQTRLQVGRAERQTPLLKSRITRLTLNPTWTIPPTIMREDKLPAI 373 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 R +P+YL+ N+ ++D +G + E +DW P N + RQ+ G N + + F + Sbjct: 374 RLNPEYLRQQNLQVLDAEGHALAPELIDW--ARPGNILLRQEAGPRNPLGKIVMRFPNPY 431 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 + Y+HDTP LF R +SGCVRV + L L+ R +E++ T T Sbjct: 432 SVYLHDTPSQPLFTKGPRAFSSGCVRVEQPLLLRDLLVSPAE---RARTDELLATGVTHE 488 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +LAT VPV Y + + + + DIY D V + + Sbjct: 489 FRLATPVPVLLGYWTVEVDRQGGLVYAPDIYARDLVLMKAM 529 >gi|15641281|ref|NP_230913.1| hypothetical protein VC1268 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081440|ref|YP_002809991.1| hypothetical protein VCM66_1223 [Vibrio cholerae M66-2] gi|229505145|ref|ZP_04394655.1| hypothetical protein VCF_000353 [Vibrio cholerae BX 330286] gi|229511183|ref|ZP_04400662.1| hypothetical protein VCE_002590 [Vibrio cholerae B33] gi|229518302|ref|ZP_04407746.1| hypothetical protein VCC_002326 [Vibrio cholerae RC9] gi|229608165|ref|YP_002878813.1| hypothetical protein VCD_003083 [Vibrio cholerae MJ-1236] gi|298498640|ref|ZP_07008447.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655753|gb|AAF94427.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009328|gb|ACP05540.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229345017|gb|EEO09991.1| hypothetical protein VCC_002326 [Vibrio cholerae RC9] gi|229351148|gb|EEO16089.1| hypothetical protein VCE_002590 [Vibrio cholerae B33] gi|229357368|gb|EEO22285.1| hypothetical protein VCF_000353 [Vibrio cholerae BX 330286] gi|229370820|gb|ACQ61243.1| hypothetical protein VCD_003083 [Vibrio cholerae MJ-1236] gi|297542973|gb|EFH79023.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 524 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 182/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ S V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +++ +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 367 HHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|254848392|ref|ZP_05237742.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745664|ref|ZP_05419612.1| L,D-transpeptidase YcbB [Vibrio cholera CIRS 101] gi|262159059|ref|ZP_06030171.1| L,D-transpeptidase YcbB [Vibrio cholerae INDRE 91/1] gi|254844097|gb|EET22511.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255736739|gb|EET92136.1| L,D-transpeptidase YcbB [Vibrio cholera CIRS 101] gi|262029244|gb|EEY47896.1| L,D-transpeptidase YcbB [Vibrio cholerae INDRE 91/1] Length = 523 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 182/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 132 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 188 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 189 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 247 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 248 HGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 305 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ S V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 306 DAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 365 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +++ +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 366 HHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 425 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 426 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 479 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 480 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 512 >gi|153801328|ref|ZP_01955914.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|229529651|ref|ZP_04419041.1| hypothetical protein VCG_002746 [Vibrio cholerae 12129(1)] gi|124123153|gb|EAY41896.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|229333425|gb|EEN98911.1| hypothetical protein VCG_002746 [Vibrio cholerae 12129(1)] Length = 524 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 183/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKLIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +++ +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 367 HHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|153823871|ref|ZP_01976538.1| putative peptidoglycan binding domain protein [Vibrio cholerae B33] gi|126518613|gb|EAZ75836.1| putative peptidoglycan binding domain protein [Vibrio cholerae B33] Length = 519 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 182/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 132 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 188 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 189 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 247 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 248 HGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 305 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ S V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 306 DAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 365 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +++ +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 366 HHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 425 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 426 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 479 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 480 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 512 >gi|114562617|ref|YP_750130.1| peptidoglycan binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333910|gb|ABI71292.1| Peptidoglycan-binding domain 1 protein [Shewanella frigidimarina NCIMB 400] Length = 473 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 100/334 (29%), Positives = 159/334 (47%), Gaps = 4/334 (1%) Query: 82 IAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + + WP + L G+ S++++ +RL + GD + + + Sbjct: 121 LRKLMWLSQTQDWPAITLEGLLRPGDRHPSIKQINQRLWLLGDAYEYLEDEIDYQPALVQ 180 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 +VK FQ RHGL ++ TL +N R L + + L Q + Y+L+NI Sbjct: 181 SVKRFQSRHGLKTDAVIGPKTLFWLNQTPQQRASLLAKSFVEKTVYLSQ-LPQPYLLINI 239 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA + V+ +V L S VIVG+ RQTP++ +I+ I+ NP W +PR +++KD++ +R Sbjct: 240 PAFQMVLVDQNQVVLASKVIVGKSYRQTPVMTGQISNIVINPTWTVPRQLLRKDILPQVR 299 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSR 318 + Y D + + D +G V W F +R Q PG NA+ K F + Sbjct: 300 SNGAYFADRHFDVFDYEGHRVDKTPQQWQQAATGKFPYRVVQRPGSGNALGRYKFHFNND 359 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP P +F +V R +SGCVR+ + L W R +T Sbjct: 360 QSVYLHDTPTPEMFAHVERDISSGCVRIEKVQQLADWFANHLVIDKRTWAHLQSNHTQTQ 419 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 L++ +PVH VY AW + + Q+RDDIY L Sbjct: 420 WFALSSSLPVHMVYWRAWVDEQHVAQYRDDIYQL 453 >gi|153827569|ref|ZP_01980236.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149738468|gb|EDM52864.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 524 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 183/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 190 EVALYKQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKLIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +++ +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 367 HHMEIIRGWSDPEVIDPALIDWETVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|153212308|ref|ZP_01948096.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116686|gb|EAY35506.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 524 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 183/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +++ +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 367 HHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|270261208|ref|ZP_06189481.1| hypothetical protein SOD_a04330 [Serratia odorifera 4Rx13] gi|270044692|gb|EFA17783.1| hypothetical protein SOD_a04330 [Serratia odorifera 4Rx13] Length = 611 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 184/467 (39%), Gaps = 74/467 (15%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + S + + ++++N + + + P + Sbjct: 133 YLQFVSAIGANGNSWLYSNIPYKLGLPPNAVINQWQLAVRQGKTLAYVTKLAPQHPQ--Y 190 Query: 76 AQTEKAI----------------------------AFYQDILSRGG-----------WPE 96 A+ +A+ A ++IL+R G P Sbjct: 191 AKMHQALRDMLADNRPWPQMANGPSLRPDQLSSDIAALREILARNGMLTAASVQTQEPPA 250 Query: 97 LPIRPL-HLGNSSVSVQRLRER----------------LIISGDLD-------PSKGLSV 132 + + +SV + R L S + P Sbjct: 251 VLTGSRNEPDDGGLSVDEEKSRESKSVVISPSAAPVKDLAASPESPFAQQPAGPVTVTDN 310 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 A+ + VK FQ GL G++ + T E +NV R L +N+ R++ L Sbjct: 311 AYTPDLVEGVKRFQKWQGLTADGVIGARTREWLNVSPQTRASLLALNIQRLRILPGYV-- 368 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++VNIP SL +NG L S VIVGR R+TP+++S +N ++ NP W +P ++++ Sbjct: 369 DTGIMVNIPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMNSALNNVVVNPPWNVPTTLVR 428 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFI--FRQDPGKINA 307 +D++ +D Y + + ++ + +DWN NF RQ PG N+ Sbjct: 429 EDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWNMVSARNFPYRIRQAPGATNS 488 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 489 LGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNNTR 547 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K TT V + +PV Y++AW D QFR DIY D+ Sbjct: 548 VSSTLKGGNTTYVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDD 594 >gi|121729970|ref|ZP_01682389.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147674156|ref|YP_001216833.1| hypothetical protein VC0395_A0887 [Vibrio cholerae O395] gi|121628291|gb|EAX60802.1| conserved hypothetical protein [Vibrio cholerae V52] gi|146316039|gb|ABQ20578.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227013185|gb|ACP09395.1| conserved hypothetical protein [Vibrio cholerae O395] Length = 524 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 181/391 (46%), Gaps = 19/391 (4%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSRGGW 94 ++ + +A + + + + + Q +A I Sbjct: 133 GQLDQPLALPSEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVA 192 Query: 95 PELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGL 151 + L G+ + L +RL + LD + L+ +DA +E +K FQ HGL Sbjct: 193 LYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKMHGL 251 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G Sbjct: 252 QPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAG 309 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ Sbjct: 310 REVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHM 369 Query: 272 HMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 +I + + +DW + +P + RQ G NA+ + K + Y+HDTP Sbjct: 370 EIIRGWSDPEVIDPALIDWETVDPATFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTP 429 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LFNN R +SGC+RV N LL + + T + L +P Sbjct: 430 SKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKKRIP 483 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 VH +Y + W ++ ++ +RDDIY D + +G Sbjct: 484 VHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|310815557|ref|YP_003963521.1| peptidoglycan binding domain-containing protein [Ketogulonicigenium vulgare Y25] gi|308754292|gb|ADO42221.1| peptidoglycan binding domain-containing protein [Ketogulonicigenium vulgare Y25] Length = 547 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 112/421 (26%), Positives = 188/421 (44%), Gaps = 26/421 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVN--DRFDNFLARVDMGI-DSDIPIISKETIA 76 + +G +L + + +I V+ + ++ + + P S A Sbjct: 127 VSLGQALHGGFLTPGRVISLIK-RQAPQVDGVALLNAMTSQSAGAVLRALTP--SDAQYA 183 Query: 77 QTEKAIAFYQDILSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +A A + GGW L LG+ +V LR RL++ G + PS LS Sbjct: 184 GLMRARAQLDAAEAAGGWGGEVFAGAAGKLQLGDQGDAVLSLRNRLMLQGYMAPS--LSP 241 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 FD + V+ FQ HGL G+V + TL +N+ +D RI+Q+ V + R + + +G Sbjct: 242 VFDQSLLLGVQAFQTAHGLATDGVVGAGTLAELNMGIDARIQQVLVAMERARW-SNKPLG 300 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSI 250 R++ VN+ NG R+ ++G DR+TP +N ++ NP W +PRSI Sbjct: 301 ARHIWVNLADYHTVIRNNGMDEFRTRSVIGARGADRETPEFSDIMNHMVVNPSWHVPRSI 360 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAM 308 + + + L+++P + +I++ D G+ + +D+N+ NF F R+ P + NA+ Sbjct: 361 VVGEYLPQLQRNPYAVS--HINVQDGSGRAIDRSLIDFNAYNASNFPFSMREPPSRGNAL 418 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F ++ N Y+HDTP LF R + GC+R+ + D LL + R Sbjct: 419 GLVKFMFPNQWNIYLHDTPSKDLFARETRAFSHGCIRLADPFDFAYQLLGPQTSDPRGLF 478 Query: 369 EEVVKTRKTTPVKLA-------TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + + T + T V L +PVH Y + + FR DIYG D G + Sbjct: 479 QRTLDTGRETRVDLEQPLPVQPQPLPVHLDYRTTVIAPSGAVTFRRDIYGRDAAIWGAMA 538 Query: 422 L 422 Sbjct: 539 Q 539 >gi|262169418|ref|ZP_06037110.1| L,D-transpeptidase YcbB [Vibrio cholerae RC27] gi|262022231|gb|EEY40940.1| L,D-transpeptidase YcbB [Vibrio cholerae RC27] Length = 523 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 181/391 (46%), Gaps = 19/391 (4%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSRGGW 94 ++ + +A + + + + + Q +A I Sbjct: 132 GQLDQPLALPSEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVA 191 Query: 95 PELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGL 151 + L G+ + L +RL + LD + L+ +DA +E +K FQ HGL Sbjct: 192 LYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKMHGL 250 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G Sbjct: 251 QPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAG 308 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ Sbjct: 309 REVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHM 368 Query: 272 HMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 +I + + +DW + +P + RQ G NA+ + K + Y+HDTP Sbjct: 369 EIIRGWSDPEVIDPALIDWETVDPATFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTP 428 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LFNN R +SGC+RV N LL + + T + L +P Sbjct: 429 SKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKKRIP 482 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 VH +Y + W ++ ++ +RDDIY D + +G Sbjct: 483 VHIIYQTVWY-EEGVLHYRDDIYHYDALALG 512 >gi|269102898|ref|ZP_06155595.1| L,D-transpeptidase YcbB [Photobacterium damselae subsp. damselae CIP 102761] gi|268162796|gb|EEZ41292.1| L,D-transpeptidase YcbB [Photobacterium damselae subsp. damselae CIP 102761] Length = 582 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 108/354 (30%), Positives = 169/354 (47%), Gaps = 15/354 (4%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 E KA+ + S WP + LGN + + L L + GDL + Sbjct: 217 EQYTSNIKALEKLTQL-SHKRWPIFHVANKVSLGNPLPNAKNLITILEMLGDLPSYQAEQ 275 Query: 132 ------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + AVK FQ RHGL P G++ +TL ++ R+R + +N +R+ Sbjct: 276 MLTENLDYLSPTLIEAVKSFQQRHGLSPDGVIGPNTLYWLSKSPQERLRVVALNTLRLSL 335 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 +++ ++VNIPA L A N + + S VIVGR R TP++ S I ++FNPYW Sbjct: 336 WPDEQPNQ--IVVNIPAYELTARLNNQSVMTSKVIVGRPSRNTPMMDSTITSVVFNPYWN 393 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEP--PNFIFRQD 301 +P SI++KD++ ++++P YL N ++ + V ++W P + RQ Sbjct: 394 VPTSIMRKDILPKVKRNPSYLTRNRYEILSSWSNPARISVNAINWRGVNPKTFPYRLRQK 453 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG NA+ K + Y+HDT LFN R +SGCVRV L LL+ + Sbjct: 454 PGNKNALGRFKFNIPNDYAIYLHDTSSKRLFNKSDRALSSGCVRVEYAKGLAQLLLEYS- 512 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 S + +T V L ++PVH +Y +AW+ + +I +RDDIY D + Sbjct: 513 GVSDKRFIQYSSRTRTKTVVLKNKIPVHLIYQTAWAEGNGLIYYRDDIYHYDKM 566 >gi|254291719|ref|ZP_04962506.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422403|gb|EDN14363.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 524 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 183/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSQ---EAQLALHMAIGNQSLARIMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +++ +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 367 HHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|229525867|ref|ZP_04415272.1| hypothetical protein VCA_003512 [Vibrio cholerae bv. albensis VL426] gi|229339448|gb|EEO04465.1| hypothetical protein VCA_003512 [Vibrio cholerae bv. albensis VL426] Length = 524 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + + +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 367 HRMEIIRGWSDPEVIDPALIDWETVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|229521381|ref|ZP_04410800.1| hypothetical protein VIF_001911 [Vibrio cholerae TM 11079-80] gi|229341479|gb|EEO06482.1| hypothetical protein VIF_001911 [Vibrio cholerae TM 11079-80] Length = 524 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 182/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + + +I + + +DW + +P + RQ G NA+ + K + Y+H Sbjct: 367 HRMEIIRGWSDPEVIDPALIDWETVDPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|300716096|ref|YP_003740899.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299061932|emb|CAX59048.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 616 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 109/390 (27%), Positives = 171/390 (43%), Gaps = 12/390 (3%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS-KETIAQTEKAIAFYQDI 88 + L + + + A D +P S + E A Sbjct: 215 TLKPGQLSDDVPALRAILARTGMMTASAEGPKPTDEPVPTTSVPASFVDEEIASTPAPKP 274 Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + PL ++ + L + G+ P+ + A + AVK FQ Sbjct: 275 VDEQATVSPSATPLPENPNAANTPELAG--QVQGNAVPADPTH-IYSAELVEAVKRFQRW 331 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 GL+P G + T E +NV LR L +N+ R++ L + ++VNIP SL Sbjct: 332 QGLEPDGAIGPRTREWLNVSPQLRASLLALNIQRLRLLPDDMHNG--IMVNIPNYSLIYY 389 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 NG L S VIVGR DR+TP++ S +N ++ NP W +P +++++D++ ++QDP YL Sbjct: 390 LNGSQILASRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRQDIVPKVKQDPAYLYK 449 Query: 269 NNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +N ++ + +DW + RQ PG N++ K S + Y+ Sbjct: 450 HNYTLLSGWSNDAEVIDPSMIDWRMVSAASFPYRIRQAPGATNSLGRYKFNMPSSDAIYL 509 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF +R +SGCVRV DL LL+D W+ I +K T V + Sbjct: 510 HDTPNHNLFQKDIRALSSGCVRVNKASDLANLLLQDA-GWNDTRISSTLKEGDTRYVPIR 568 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +PV+ Y++AW D Q+R DIY D Sbjct: 569 HRIPVNLYYLTAWVADDGKAQYRTDIYNYD 598 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 6/124 (4%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + + S++N + + + S P + Sbjct: 133 YLQFVSTVPAKGETWLYSNVPYKLEVPTLSVINQWQRAVEHGGTNAFVTSLAPQHPQ--Y 190 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 +A+ + WP+L + L G S V LR L +G + S Sbjct: 191 VLMHQALKTL--LADNHPWPQLAAKQTLKPGQLSDDVPALRAILARTGMMTASAEGPKPT 248 Query: 135 DAYV 138 D V Sbjct: 249 DEPV 252 >gi|259908907|ref|YP_002649263.1| hypothetical protein EpC_22600 [Erwinia pyrifoliae Ep1/96] gi|224964529|emb|CAX56039.1| Peptidoglycan-binding domain 1 protein [Erwinia pyrifoliae Ep1/96] gi|283478902|emb|CAY74818.1| Uncharacterized protein ycbB [Erwinia pyrifoliae DSM 12163] Length = 615 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 116/472 (24%), Positives = 187/472 (39%), Gaps = 81/472 (17%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + S + + +++N + ++ + S P + Sbjct: 134 YLQFTSSAPSKGEAWLYSTVPYRLEAPSMTVINQWQQALASGNLNGFVRSLAPQHPQ--Y 191 Query: 76 AQTEKAIAF----------------------------YQDILSRGGWPELPIRPLHL--- 104 A+ +A+ +DIL R G P+ Sbjct: 192 ARMHQALKSLLADTRPWPRIVDKQTLRPGQISNDVSALRDILQRNGMMSSANEPVKPAAE 251 Query: 105 --GNSSV----------------------SVQRLRERLIISGDLDPSKGLSVAFD----- 135 G V L SGD+ S F+ Sbjct: 252 VVGAVDAPLVHDDDNAQPDANLLTRADNNRVVSPSANL--SGDVTDSAAAPNVFNGQAAL 309 Query: 136 --------AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + A+K FQ GL+ G + T E +NV R L +N+ R++ L Sbjct: 310 GSQANTYSPQLVEALKRFQRWQGLEADGAIGMRTREWLNVSPQQRATLLALNIQRLRLLP 369 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ NP W +P Sbjct: 370 DDM--QNGIMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVP 427 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP--PNFIFRQDP 302 ++++KD++ +++DP YL + ++ E V ++W++ + RQ P Sbjct: 428 TTLVRKDIVPKVKRDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSTVSAASFPYRIRQAP 487 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 488 GATNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLRD-VG 546 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W+ I +K T V + +PV+ Y++AW +D Q+R DIY DN Sbjct: 547 WNDARISGTLKEGNTRFVPIRQRIPVNLYYLTAWVAEDGQPQYRTDIYNYDN 598 >gi|327483956|gb|AEA78363.1| L,D-transpeptidase YcbB [Vibrio cholerae LMA3894-4] Length = 536 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 180/394 (45%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 132 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 188 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +D +E +K FQ Sbjct: 189 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDTSLEKPIKQFQKM 247 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 248 HGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 305 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 306 DAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 365 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + + +I + + +DW + +P + RQ G NA+ + K + Y+H Sbjct: 366 HRMEIIRGWSDPEVIDPALIDWETVDPETFPYRLRQLAGVQNALGTYKFNTPNSRAIYLH 425 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 426 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 479 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 480 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 512 >gi|312171965|emb|CBX80222.1| Uncharacterized protein ycbB [Erwinia amylovora ATCC BAA-2158] Length = 615 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 114/472 (24%), Positives = 183/472 (38%), Gaps = 83/472 (17%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + + +++N + +D + S P + Sbjct: 134 YLQFTSSVPAKGEAWLYSTVPYRLEAPSTTVINQWQQALAQGNLDSFVRSLAPRHPQ--Y 191 Query: 76 AQTEKAIAFY----------------------------QDILSRGGWPELPIRPLHL--- 104 + +A+ +DIL R G P Sbjct: 192 VRMHQALKSLLADTRPWPQIVDKQTLRPGQISNDVPALRDILQRNGMMSAANEPARPPVE 251 Query: 105 -------------------------GNSSVSVQRLRERLIISGDLDPSKGLSVA------ 133 G +S V + ISGD + Sbjct: 252 VVGAVNAPLVHDDDNAQPDTGLGGQGENSAVVSPSAK---ISGDASNAAAEPNVFTGQAA 308 Query: 134 -------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + A+K FQ GL+ G + T + +NV R L +N+ R++ L Sbjct: 309 LGSPTNTYTPQLVEALKRFQRWQGLEADGAIGLRTRQWLNVSPPQRATLLALNIQRLRLL 368 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ NP W + Sbjct: 369 PDDMHNG--IMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNV 426 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP--PNFIFRQD 301 P ++++KD++ ++QDP YL + ++ E V ++W+ + RQ Sbjct: 427 PTTLVRKDIVPKVKQDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSMVSAASFPYRIRQA 486 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL Sbjct: 487 PGPTNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLL-HDV 545 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W I +K T V + +PV+ Y++AW +D + QFR DIY D Sbjct: 546 GWDDARISGTLKEGNTRFVPIRHRIPVNLYYLTAWVAEDGLPQFRTDIYNYD 597 >gi|153829587|ref|ZP_01982254.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229515643|ref|ZP_04405102.1| hypothetical protein VCB_003301 [Vibrio cholerae TMA 21] gi|148874921|gb|EDL73056.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229347412|gb|EEO12372.1| hypothetical protein VCB_003301 [Vibrio cholerae TMA 21] Length = 524 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 181/394 (45%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +D +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNNVAYYDTSLEKPIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + + +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 367 HRMEIIRGWSDPEVIDPALIDWETVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|292487843|ref|YP_003530718.1| hypothetical protein EAMY_1360 [Erwinia amylovora CFBP1430] gi|292899070|ref|YP_003538439.1| peptidoglycan binding protein [Erwinia amylovora ATCC 49946] gi|291198918|emb|CBJ46028.1| putative peptidoglycan binding protein [Erwinia amylovora ATCC 49946] gi|291553265|emb|CBA20310.1| Uncharacterized protein ycbB [Erwinia amylovora CFBP1430] Length = 615 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 114/472 (24%), Positives = 183/472 (38%), Gaps = 83/472 (17%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + + +++N + +D + S P + Sbjct: 134 YLQFTSSVPAKGEAWLYSTVPYRLEAPSTTVINQWQQALAQGNLDSFVRSLAPRHPQ--Y 191 Query: 76 AQTEKAIAFY----------------------------QDILSRGGWPELPIRPLHL--- 104 + +A+ +DIL R G P Sbjct: 192 VRMHQALKSLLADTRPWPQIVDKQTLRPGQISNDVPALRDILQRNGMMSAANEPARPPVE 251 Query: 105 -------------------------GNSSVSVQRLRERLIISGDLDPSKGLSVA------ 133 G +S V + ISGD + Sbjct: 252 VVGAVNAPLVHDDDNAQPDTGLGGQGENSAVVSPSAK---ISGDASNAAAEPNVFTGQAA 308 Query: 134 -------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + A+K FQ GL+ G + T + +NV R L +N+ R++ L Sbjct: 309 LGSPTNTYTPQLVEALKRFQRWQGLEADGAIGLRTRQWLNVSPPQRATLLALNIQRLRLL 368 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ NP W + Sbjct: 369 PDDMHNG--IMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNV 426 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP--PNFIFRQD 301 P ++++KD++ ++QDP YL + ++ E V ++W+ + RQ Sbjct: 427 PTTLVRKDIVPKVKQDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSMVSAASFPYRIRQA 486 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL Sbjct: 487 PGPTNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLL-HDV 545 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W I +K T V + +PV+ Y++AW +D + QFR DIY D Sbjct: 546 GWDDARISGTLKEGNTRFVPIRHRIPVNLYYLTAWVAEDGLPQFRTDIYNYD 597 >gi|297578860|ref|ZP_06940788.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536454|gb|EFH75287.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 524 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 182/394 (46%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DAGREVFEAKVMVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + + +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 367 HRMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|152993866|ref|YP_001359587.1| hypothetical protein SUN_2290 [Sulfurovum sp. NBC37-1] gi|151425727|dbj|BAF73230.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 566 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 110/392 (28%), Positives = 197/392 (50%), Gaps = 15/392 (3%) Query: 42 ESYHSIVNDRFDNF--LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-- 97 + + ++S +P+ +++ + K + Y+ + +P++ Sbjct: 162 SPKSFPSEEALAQAVSGGNIHAYLNSLLPM--EKSYRRLVKRLENYRVMEK---FPKIKY 216 Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL LG+ S V+ +++RL ISGD + + FD +E AVK +Q R+ L +G V Sbjct: 217 SNDPLKLGDWSPRVKEVKKRLQISGDYPKNAPVDWKFDRRLEQAVKTYQKRYLLKITGQV 276 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 D +T+ +N P I+ + VNL + K + Y+ VN+P +L NG++ ++ Sbjct: 277 DKTTMYYLNQPASKNIKAIIVNLDKTKLYPKH-FENEYIAVNVPDFNLRYYRNGEMIFKT 335 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 ++VGR+DR TPI +I ++ NP W IP ++I++D++ +LR++P YL++NNIH+ Sbjct: 336 GIVVGRIDRPTPIFSDKIEYMVINPTWTIPDNLIKRDLIHVLRENPAYLEENNIHVFSGN 395 Query: 278 GK-EVFVEEVDWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 + V E +D + F Q PG NA+ K F ++ + Y+HDT L Sbjct: 396 KEITVTQEMLDPYEHSDKKVPYRFVQYPGDSNALGRIKFMFPNKYSVYLHDTDNKSLLTR 455 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPT-WSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 + +SGC+RV DL LLK ++R I+ ++ T K ++L +PVH +Y Sbjct: 456 RYKIYSSGCMRVDKPFDLMDILLKHAKGRYTREDIDAIIATDKPKTIRLKKAIPVHILYF 515 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPLPED 425 + + +D + F++DIY D + + Sbjct: 516 TVF-EEDGLAYFKNDIYLYDKIIEESTAGHKK 546 >gi|146299527|ref|YP_001194118.1| peptidoglycan binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153945|gb|ABQ04799.1| Peptidoglycan-binding domain 1 protein [Flavobacterium johnsoniae UW101] Length = 526 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 109/414 (26%), Positives = 201/414 (48%), Gaps = 18/414 (4%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII------S 71 ++L ++ LD + + FD + + + I Sbjct: 120 ILLTYNFEKYLNHLYKGKLDPKKLYTDWDLDEKTFDVNNVLIKAFNKNKLDSIVDNIQPK 179 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISGDLDPS 127 ET Q +++ I++ ++ + + L +++ ++ ++++L+ D+ Sbjct: 180 SETYKQLLQSL----QIINSFPDEDIQAIENVKKITLKDTNNALINIKKKLLFWKDMSGK 235 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 L+ +D AVK FQ RHGL G++ T+ A+N + R +Q+ NL R + Sbjct: 236 DSLTDKYDEKTFEAVKKFQARHGLADDGVIGIGTISALNYSKERRKQQIIANLERWRWYP 295 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + Y ++NIP SL VEN L ++VG R+TPI+ S + ++FNP W +P Sbjct: 296 TE-LAENYFIINIPDYSLHVVENQDTTLVRNIVVGTSSRKTPIITSVLKTVVFNPTWTVP 354 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 +I+++D++ ++++ YL NI + D GK V WN +P N+ + Q PG N+ Sbjct: 355 PTILKEDVVPAMKRNRNYLAKKNITIYDTSGKVVEPSA--WNENKPNNYRYVQSPGYNNS 412 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + KI F + ++ Y+HDT F R +SGCVRV N ++L +L D+ +S+ Sbjct: 413 LGLMKILFPNHHSVYLHDTNHRNYFVRNNRSLSSGCVRVENPLELAEHILNDSIRFSKVK 472 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 I+ ++ ++KT K+ + ++ Y +AWS K+ + FR DIY LD+ + Sbjct: 473 IDTIIASKKTMSFKITKKYALYQWYWTAWSKKN-QLIFRADIYNLDSDLYSKLR 525 >gi|254226414|ref|ZP_04920001.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621036|gb|EAZ49383.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 524 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 94/394 (23%), Positives = 181/394 (45%), Gaps = 22/394 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 133 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 189 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +D +E +K FQ Sbjct: 190 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNNVAYYDTSLEKPIKQFQKM 248 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL P G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 249 HGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 306 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 307 DVGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 366 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + + +I + + +DW + +P + RQ G NA+ + K + Y+H Sbjct: 367 HRMEIIRGWSDPEVIDPALIDWETVDPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 426 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFNN R +SGC+RV N LL + + T + L Sbjct: 427 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQ-GITLDDFPV-----STQAIALKK 480 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 481 RIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|90579750|ref|ZP_01235559.1| hypothetical amidase [Vibrio angustum S14] gi|90439324|gb|EAS64506.1| hypothetical amidase [Vibrio angustum S14] Length = 587 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 113/422 (26%), Positives = 192/422 (45%), Gaps = 31/422 (7%) Query: 8 NKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI 67 + F Y+ + + KPI+ S D D + + ++ Sbjct: 163 YYVYRAFQNYIATHRDVLFLSKPINMSKSMTKYA--------DGVDVYPMTLAK-LEQLR 213 Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 P T AIA YQD+ + + G + + L + L GD+D + Sbjct: 214 PSY--IAFKPTMDAIAKYQDLPAHTLTSSNFKQVYRKGATLPNGHELIKVLYTLGDMDQA 271 Query: 128 KGLSVAFDA-----------YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 +D V ++K FQ RHGL G++ ++T++ + +P D R+L Sbjct: 272 D-----YDRLSVVHNITNTGAVFESLKAFQKRHGLASDGIIGAATVQQLVMPYDDIARRL 326 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 +N +R+ L + G ++ VNIP LE + G V S VIVGR R T + S I Sbjct: 327 ALNTLRVATLNKHAEGRPHIWVNIPNYKLEVFDKGNVVFESKVIVGRDSRPTNLFSSAIT 386 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPP 294 ++ NPYW +P +I Q D++ ++ + YLK +N+ +++ + +DW + P Sbjct: 387 TMVVNPYWNVPITIKQHDVIPKVKHNIDYLKQHNMQILNSWRDRTVISPSSIDWATVNPK 446 Query: 295 NFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 F F+Q PG N++ K + ++HDTP LF+ R +SGCVRV DL Sbjct: 447 TFPHEFQQGPGPRNSLGRVKFLMPNDYAIFLHDTPSRGLFSKTKRDLSSGCVRVERAYDL 506 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 ++++ + ++++ +K V L+ + V FVY++AW D +Q R+DIYG Sbjct: 507 ANYVIEYQNRGNIPEFKQMLDAQKQKTVSLSKRIDVDFVYLTAWVDNDGKVQMREDIYGY 566 Query: 413 DN 414 D+ Sbjct: 567 DS 568 >gi|327393347|dbj|BAK10769.1| cell wall degradation amidase protein YcbB [Pantoea ananatis AJ13355] Length = 610 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 8/300 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + G ++ + +AVK FQ GLD G + T E +NV R L +N+ R++ Sbjct: 302 PAAPGSVNVYNDELVAAVKRFQQWQGLDADGAIGLRTREWLNVSPQQRAALLALNIQRLR 361 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 362 LLPDDMHNG--IMVNIPNYSLNYYNNGTKVLSSRVIVGRPDRKTPLMRSALNNVVLNPPW 419 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP--PNFIFR 299 +P +++++D++ ++QDP YL + ++ + + +DW+ + R Sbjct: 420 NVPTNLVRQDIIPKVKQDPTYLYKHGYTLLSGWSADSEVIDPSMIDWSMVSASSFPYRIR 479 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG+ N++ K S + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 480 QAPGQTNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGILLQD 539 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 W+ I + +K T V + +PV+ Y++AW D QFR DIY DN Sbjct: 540 -VGWNDARISDTLKQGDTRYVPIRHRIPVNLYYLTAWVADDGKTQFRTDIYNYDNTARSA 598 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 6/118 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETI 75 YL + + S + S++N + A ++S +P + Sbjct: 142 YLQFVSSVPAQGETWLYSTTPYKLAVPSVSVINAWQNAVNAGSSAAFVNSLVPQHPQ--Y 199 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 KA+ + + WP++ R L G S V LRE L SG L Sbjct: 200 PLMHKALKSL--LEDKQPWPQIKNRDTLRPGQVSDDVPALREILRRSGMLSAQVTAPA 255 >gi|85716085|ref|ZP_01047061.1| hypothetical protein NB311A_10915 [Nitrobacter sp. Nb-311A] gi|85697084|gb|EAQ34966.1| hypothetical protein NB311A_10915 [Nitrobacter sp. Nb-311A] Length = 783 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 102/432 (23%), Positives = 173/432 (40%), Gaps = 47/432 (10%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLA--RVDMGIDSDIPIISKETI 75 ++ +H S + + H N +DS P E Sbjct: 316 MMDYARQAQSGRMHWSQVTADVQYPEHPIDPEQVLTNVTTAKDSSAALDSYNPPH--ELY 373 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLG--------NSSVSVQRLRERLIISGDLDPS 127 + ++ +A + S G E+ G V ++R RL ++ Sbjct: 374 RELKQKLAELRK-ASEGPLIEIANG---PGLVFRKNAVMEDPRVPQIRARLGMT-----Q 424 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKKL 186 FDA V +AV+ FQ RH L P G++ ++T+ A+N P I + VN+ R + L Sbjct: 425 NPDDTRFDADVAAAVREFQARHHLKPDGILGNNTVRALNGPKKDHTIDTIIVNMERWRWL 484 Query: 187 LEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMFN 241 + + Y ++NIP SL+ +++G + V+VG+ TP+L + I N Sbjct: 485 PRELGAPSLDDAYAILNIPDYSLKVMQHGAQIWSTRVVVGKPGLHATPLLTETMKYITVN 544 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P SII K+ + L+QDP L + + Q Sbjct: 545 PTWNVPPSIIYKEYLPALQQDPTVLSRMGLKL---------------ERDRNGGIHISQP 589 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK--- 358 PG+ NA+ + F ++ Y HDTP+ LF+ R + GC+RV+N LL Sbjct: 590 PGERNALGRIRFNFPNKFLVYQHDTPDKHLFSKNKRAFSHGCMRVQNPDQYAATLLNIVL 649 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 ++ I + R + T VPVH Y +A+ + +Q R D+YG D + Sbjct: 650 PQEHYTPEKIRS-MYGRNEFNINFPTPVPVHITYQTAFVDQAGKLQLRADVYGRDAKMLA 708 Query: 419 IIPLPEDHPIDS 430 ++ +++ Sbjct: 709 LLRNSNGRDLET 720 >gi|291616920|ref|YP_003519662.1| YcbB [Pantoea ananatis LMG 20103] gi|291151950|gb|ADD76534.1| YcbB [Pantoea ananatis LMG 20103] Length = 620 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 8/300 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + G ++ + +AVK FQ GLD G + T E +NV R L +N+ R++ Sbjct: 312 PAAPGSVNVYNDELVAAVKRFQQWQGLDADGAIGLRTREWLNVSPQQRAALLALNIQRLR 371 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 372 LLPDDMHNG--IMVNIPNYSLNYYNNGTKVLSSRVIVGRPDRKTPLMRSALNNVVLNPPW 429 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP--PNFIFR 299 +P +++++D++ ++QDP YL + ++ + + +DW+ + R Sbjct: 430 NVPTNLVRQDIIPKVKQDPTYLYKHGYTLLSGWSADSEVIDPSMIDWSMVSASSFPYRIR 489 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG+ N++ K S + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 490 QAPGQTNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGILLQD 549 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 W+ I + +K T V + +PV+ Y++AW D QFR DIY DN Sbjct: 550 -VGWNDARISDTLKQGDTRYVPIRHRIPVNLYYLTAWVADDGKTQFRTDIYNYDNTARSA 608 >gi|332141802|ref|YP_004427540.1| putative periplasmic protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551824|gb|AEA98542.1| putative periplasmic protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 462 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 106/382 (27%), Positives = 169/382 (44%), Gaps = 32/382 (8%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPEL------PIRPLHLGNSSV----------SVQRLR 115 + + Q + A AFY I +GGW L L + ++ L Sbjct: 78 QAQLKQMKSAYAFYSSIAQQGGWKALNEDLLLKNGALRKAAADETPIYSEEQAQAITALI 137 Query: 116 ERLII---------SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 RL + L F+ VE+AVK FQ RHGL G+V TL A+N Sbjct: 138 SRLGREYPSINTNCTHALTAVNSAPCVFNKDVENAVKDFQRRHGLLVDGVVGRKTLAALN 197 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 V + +QL +N+ R++ + E+K YVLVNIP L + NGKV V+VG+ Sbjct: 198 VTAKKKAQQLALNITRLE-MFEEKDSDAYVLVNIPEFRLRYISNGKVKATKDVVVGKPSW 256 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE---KGKEVFV 283 TP I + + NP W IP SI K++ + +P YL++NNI + + + V Sbjct: 257 ATPSFSDHIEKFVVNPEWRIPISIATKEIAPKVADNPNYLEENNIVIRKDSFVDDELVDP 316 Query: 284 EEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 +DW +P + + P + N + K F +R+ Y+HDTP F R + Sbjct: 317 NTIDWEDMKPYQFDHFLVKLPNEKNPLGKVKYLFPNRHAVYVHDTPYQQWFKETNRAASH 376 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSR-YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 GC+R+ + L + ++ S ++ + ++ L +P+H VY +AW+ ++ Sbjct: 377 GCIRLEDPFSLAQLIAEEQGVDSLMDNVISARELSQSKTFHLEEPLPIHLVYWTAWADEN 436 Query: 401 SIIQFRDDIYGLDNVHVGIIPL 422 FR+DIY D + Sbjct: 437 GKANFRNDIYQRDRRDAEALTQ 458 >gi|312971055|ref|ZP_07785234.1| cell wall degradation protein [Escherichia coli 1827-70] gi|310336816|gb|EFQ01983.1| cell wall degradation protein [Escherichia coli 1827-70] gi|323165398|gb|EFZ51185.1| cell wall degradation protein [Shigella sonnei 53G] Length = 317 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 99/293 (33%), Positives = 151/293 (51%), Gaps = 7/293 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 10 KPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLR 69 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 70 LLPTEL--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 127 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--Q 300 +P ++ +KD++ +R DP YL+ + ++ + +VDW++ N FR Q Sbjct: 128 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 187 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 188 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 247 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 248 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 299 >gi|91792858|ref|YP_562509.1| peptidoglycan binding domain-containing protein [Shewanella denitrificans OS217] gi|91714860|gb|ABE54786.1| Peptidoglycan-binding domain 1 [Shewanella denitrificans OS217] Length = 498 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 165/373 (44%), Gaps = 5/373 (1%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRP 101 V + + S + + WP + P Sbjct: 117 PMRGGVEPLARDEFNPLSDRQKSLAIEPKSNMYLAVMNHVRRMLWLDENADWPVIDPQGL 176 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + S+ + RL + GD +ES +K FQ RHGL G++ T Sbjct: 177 LRRNDGHASIPAIAARLSLLGDF-HGAHQGYVLTPALESGLKAFQRRHGLKDDGVIGPKT 235 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +N R R L VN + + + ++ Y+LVNIPA + V+ G++ L S VIV Sbjct: 236 LSWLNQLPIERARLLAVNFVE-QSRYQAQLDDSYLLVNIPAFEMVLVDKGQIVLHSRVIV 294 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G+ RQTPI+ I+ ++ NP W +PR ++++D++ +R+D +YL + + + +G++ Sbjct: 295 GKSYRQTPIMSGAISNLVINPTWTVPRRLLRQDVLPHVRKDGRYLAEKQFDVFNYQGQKQ 354 Query: 282 FVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + +W + + Q PG+ N++ K F + N Y+HDTP P LF N R Sbjct: 355 LLTAEEWQSLAYTRFPYKLVQRPGEHNSLGRYKFHFNNDKNIYLHDTPTPELFANAERAL 414 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+R+ + +L W R KT L +PVH VY +AW + Sbjct: 415 SSGCIRIEKVAELANWFAVHRVNDKRTWRRLQSSKHKTQWFSLTHSLPVHLVYWTAWVDE 474 Query: 400 DSIIQFRDDIYGL 412 + Q+R DIY Sbjct: 475 HHLAQYRSDIYHR 487 >gi|114570411|ref|YP_757091.1| peptidoglycan binding domain-containing protein [Maricaulis maris MCS10] gi|114340873|gb|ABI66153.1| Peptidoglycan-binding domain 1 protein [Maricaulis maris MCS10] Length = 539 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 107/357 (29%), Positives = 167/357 (46%), Gaps = 7/357 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + + WP + P L G+ V +LR RL G LD Sbjct: 167 RDYDTLRA--EMMRVLAVTPIWPGVQSGPSLSAGDVGGRVDQLRTRLTAEGLLDGDWQEG 224 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +D +E+AV+ +Q R L PSG +D +TL +N+P D RI QL NL + + + + Sbjct: 225 DHYDIRLETAVRRYQGRTNLAPSGRMDQATLRQLNLPPDRRIGQLMANLEQRRWRT-RDL 283 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G R++ VN+ LEA E+G++ V+VGR TP + I+ NP+W +P Sbjct: 284 GRRHIWVNLADFRLEAWEDGQLAREHEVMVGRQASSTPEFSEDMQYIVLNPWWGLPNGSA 343 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP-NFIFRQDPGKINAMAS 310 + R++P ++ + + G+ + V E+DW+ + Q PG N M Sbjct: 344 RPRF-QSFRRNPSLARELGFRIYNRSGEAISVYEIDWSRWGGDWPYRMSQPPGATNPMGE 402 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F +RNN Y+HDT E F R ++GC+RV++ + L W+L WSR I+E Sbjct: 403 VKFIFPNRNNIYIHDTTERDQFVRTRRDFSAGCIRVQDPLALAQWVLDGQDGWSRARIDE 462 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGIIPLPEDH 426 VV T V L +PVH Y + D +++ +D+Y D+ V + E H Sbjct: 463 VVAGSSPTVVWLDDRIPVHIAYWTVVGDPDGRVRYLNDLYRRDSGVIDAYLAAHESH 519 >gi|262402380|ref|ZP_06078941.1| hypothetical protein VOA_000347 [Vibrio sp. RC586] gi|262351162|gb|EEZ00295.1| hypothetical protein VOA_000347 [Vibrio sp. RC586] Length = 522 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 178/386 (46%), Gaps = 20/386 (5%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 ++ + +A + +D I + ++ + YQ +L+ + Sbjct: 132 GQLNKPLAAPSEEAQLALHMAIGNQTLDQLIDEYTPRDPDY-QQLLHTYQSLLATES-QD 189 Query: 97 LP----IRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P LG+ L RL + D+ + +D + + +K FQ HGL Sbjct: 190 IPLYEQTGLKRLGDPLTHRDALVHRLSLVNIDITEVRDDITFYDQALVNPIKQFQSMHGL 249 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G+V T++ +N + R+ L +N R++ ++VN+P +++ + G Sbjct: 250 KPDGVVGPETMKWLNKSMAERVSLLALNAERLRLWPA--PQDTAIVVNVPGFAMKYWDAG 307 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + + V+VGRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D +YL + + Sbjct: 308 QEVFEAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDHEYLAKHQM 367 Query: 272 HMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 +I + V + +DW S +P + RQ G NA+ K + Y+HDTP Sbjct: 368 EIIRGWNDPEVVDPQLIDWASVDPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTP 427 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LFNN R +SGC+RV N LL+ E KT + L +P Sbjct: 428 SKHLFNNAARAFSSGCIRVENAQKFAQTLLEQQGIVLNELPE------KTKTIALKKRIP 481 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLD 413 VH +Y + W + +Q+RDDIY D Sbjct: 482 VHIIYQTVWY-EGGKLQYRDDIYRYD 506 >gi|157369969|ref|YP_001477958.1| hypothetical protein Spro_1726 [Serratia proteamaculans 568] gi|157321733|gb|ABV40830.1| Peptidoglycan-binding domain 1 protein [Serratia proteamaculans 568] Length = 613 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 91/295 (30%), Positives = 142/295 (48%), Gaps = 8/295 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 P + + VK FQ GL G++ T E +NV +R L +N+ R++ Sbjct: 305 SPVTVTDNRYTPDLVEGVKRFQKWQGLSADGVIGVRTREWLNVTPQIRASLLALNIQRLR 364 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 365 ILPGHV--DTGIMVNIPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPW 422 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFR 299 +P +++++D++ +D Y + + ++ + +DW+ P + R Sbjct: 423 NVPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWSMISPRNFPYRIR 482 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 483 QAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQD 542 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W+ + +K TT V + +PV Y++AW D QFR DIY D+ Sbjct: 543 A-GWNNTRVSSTLKQGNTTFVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDD 596 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 6/122 (4%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + S + + ++++N + + +++ P + Sbjct: 133 YLQFVSSIGANGNNWLYSNIPYKLGLPPNTVINQWQLALRQGKTLAYVNTLAPQHPQ--Y 190 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ +A+ + WP++ P L S + LRE L +G L PS Sbjct: 191 AKMHQALRDM--LADGRPWPQMANGPSLRPDQLSSDIPALREILARNGMLTPSTAPVEVQ 248 Query: 135 DA 136 D Sbjct: 249 DP 250 >gi|89092899|ref|ZP_01165851.1| hypothetical protein MED92_10574 [Oceanospirillum sp. MED92] gi|89082924|gb|EAR62144.1| hypothetical protein MED92_10574 [Oceanospirillum sp. MED92] Length = 411 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 170/366 (46%), Gaps = 12/366 (3%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDP 126 P ++ I E+ + + WP L + L G+ S + +LR RL++ GDLD Sbjct: 49 PQGIEKQILALEEHKIRLEQLSLANQWPSLLKTKLLRFGDESTVIPKLRTRLMLLGDLDE 108 Query: 127 SKG---LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 F + +A+ FQ RHGL G+ +T +NV R Q+ VN+ R+ Sbjct: 109 LVHCELDDPLFGIDLHNALIKFQKRHGLKADGIYGPATRRELNVSPSSRALQITVNIDRL 168 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 K + RY+ VNIP L E+G L IVG+ R+TP+ ++ +NR++ NP Sbjct: 169 KSFNP--VSDRYIQVNIPEYRLRLFEHGAEILSMKTIVGKKKRKTPVFNTTVNRLVINPS 226 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNS-PEPPNF-IF 298 W +P+SI KD++ L DP+YLK N+ ++ G + ++VD + + N+ F Sbjct: 227 WHVPKSIAYKDIVPELESDPEYLKKMNLKLVTGWGNSKTILSQDQVDLDKLYKGENYQRF 286 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 + P + S K + Y+HDT LF R +SGC+RV L L++ Sbjct: 287 WEPPSNNGTLGSVKFLTTGPYSVYLHDTSAKRLFEKETRAFSSGCIRVEKPRSLANELMR 346 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T W + ++ + + + + +H Y +A+ ++ + FR D+Y D + Sbjct: 347 MTHGWEKEKLDTYFNDTERKTINMPDTIDLHVTYWTAFIDENG-LNFRRDLYKKDRWEIA 405 Query: 419 IIPLPE 424 + E Sbjct: 406 QLKQTE 411 >gi|329298736|ref|ZP_08256072.1| murein L,D-transpeptidase [Plautia stali symbiont] Length = 590 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 92/294 (31%), Positives = 147/294 (50%), Gaps = 8/294 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + +D+ + VK FQ L G + T E +NV +R L +N+ R++ Sbjct: 283 TPSASNNVYDSTLVEGVKRFQHWQELADDGAIGPRTREWLNVSPQMRAALLALNIQRLRL 342 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L + ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 343 LPDDMHNG--IMVNIPNYSLTYYNNGNTILSSRVIVGRPDRKTPLMRSALNNVVLNPPWN 400 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP--PNFIFRQ 300 +P +++++D++ ++QDP YL + ++ + + +DW+ + RQ Sbjct: 401 VPTTLVRQDIVPKVKQDPSYLYKHGYTLLSGWSADAEVIDPSVIDWHMVSAASFPYRIRQ 460 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 461 APGASNSLGRYKFNMPSSDAIYLHDTPNHGLFQRDIRALSSGCVRVNKASELADLLLQDA 520 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W+ I + +K T V + +PV+ Y++AW D Q+R DIY DN Sbjct: 521 -GWNDSRISDTLKQGDTRYVPIRHRIPVNLYYLTAWVADDGQPQYRTDIYNYDN 573 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 10/121 (8%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHS---IVNDRFDNFLARVDMGIDSDIPIISKE 73 YL + + S + + S + + +R + S P + Sbjct: 112 YLQFVANVPTQGETWLYSNVPYKLTMPSLSAINQWQNAVNGGGSR--AFVVSLQPQHPQ- 168 Query: 74 TIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 A A+ + WP+L L G S V LRE L +G L + + Sbjct: 169 -YAPMHSALKAL--LTDNRPWPQLRDKGTLRPGQISDDVPALREILQRTGMLTGTHSATP 225 Query: 133 A 133 Sbjct: 226 T 226 >gi|330809814|ref|YP_004354276.1| hypothetical protein PSEBR_a2969 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377922|gb|AEA69272.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 520 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 106/382 (27%), Positives = 173/382 (45%), Gaps = 14/382 (3%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKE-----TIAQTEKAIAFYQDILSRGGWPELPI 99 + D LA +G+ + + A + W +P Sbjct: 141 NPPPQDHQAVVLAIAGVGLQNVASAFEQARPNLDLYRNLRGLYARLRQQPLS-DWQPVPG 199 Query: 100 RPL-HLGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL V L +RL G L P + + A+K FQ++H L G+V Sbjct: 200 GPLLQPDKQDARVPALAQRLFNEGYLSTPPLVTDEHYSPTLVEAMKSFQLQHSLQADGVV 259 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T+ +N+ +R QL++NL R++ L Q + VLVN+ AA L G+ ++ Sbjct: 260 GPWTVTELNISPAMRREQLRINLERMRWL-AQDVENDSVLVNVAAAQLTVYRGGEPIWQT 318 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VGR RQTP+L S + R+ NP W IP +I+++D + +R+DP++L +N+ ++D + Sbjct: 319 RTQVGRAQRQTPLLKSHVTRLTLNPTWTIPPTIMREDKLPEIRRDPEFLARHNLRILDSE 378 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G + E++DW P N + RQDPG N + I F + + Y+HDTP LF+ R Sbjct: 379 GLPLMAEDIDWE--HPGNLMLRQDPGPKNPLGKMAIRFPNPFSVYLHDTPSQALFSKGPR 436 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVR+ ++ L L+ R + ++ + T +LA VP+ Y +A + Sbjct: 437 AFSSGCVRIEQVMHLRDLLVSPAE---RARTDTLLASETTHEFRLARPVPILLGYWTAQA 493 Query: 398 PKDSIIQFRDDIYGLDNVHVGI 419 + DIY D Sbjct: 494 DSQGQPLYIPDIYARDATLSAA 515 >gi|299136140|ref|ZP_07029324.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX8] gi|298602264|gb|EFI58418.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX8] Length = 604 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 107/400 (26%), Positives = 186/400 (46%), Gaps = 30/400 (7%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL---SRGGWPELP------IRPLHL 104 A V I + P +K +A Y ++ + P LP + + Sbjct: 197 ADSADVSGAIATVEPQ--NAMYVALQKGLAQYLELAKQQAANPQPPLPSLGATGAKSIVQ 254 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL---------SVAFDAYVESAVKLFQMRHGLDPSG 155 G S ++ +L RL + GD+ + +++A + +AVK +Q RHGL G Sbjct: 255 GGSYAALPQLLARLQLEGDVTATDTDTAAASDTAGPRSYNAELVAAVKHYQQRHGLTADG 314 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVG 214 + ST++++NVP+++R++QL +L R + + + + R VLVN+P + A + + V Sbjct: 315 KLTQSTIDSLNVPMEVRVQQLNNSLERWRWMPDNFINPR-VLVNLPEFVVRAYDPDHSVA 373 Query: 215 LRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD-PQYLKDNNI 271 + ++ G + + TP+ + ++F PYW +P SII+K+++ +++ YL D Sbjct: 374 FKMKIVDGEAKGNHDTPMFVRSMRYVVFRPYWNVPPSIIKKELLPHIQRSGIGYLADKGY 433 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + G V + E +I RQ PG N++ K F + + YMH TPE L Sbjct: 434 EVARNDGTVVTGYTA--HDIEHLRYIVRQKPGPKNSLGLVKFLFPNEYDVYMHSTPELPL 491 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK-TTPVKLATEVPVHF 390 FN R + GCVR+ + + W+L+ W I E + K V L T +PV Sbjct: 492 FNLTRRDRSHGCVRLEHADQMAAWVLQGQGDWDEDKISEAMNGDKDNKTVNLKTTLPVII 551 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDS 430 Y +A + +D+ I F D+YG D + + P +S Sbjct: 552 GYFTATADEDNSIHFFSDLYGYDKALEAALD--KGMPYES 589 >gi|327189298|gb|EGE56466.1| hypothetical protein RHECNPAF_642003 [Rhizobium etli CNPAF512] Length = 653 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 103/414 (24%), Positives = 173/414 (41%), Gaps = 29/414 (7%) Query: 19 ILPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L V I + + + + + + + S P + Sbjct: 234 VLAFVQDTVRGRIDPNKISGYHDFQRKVVNLAPVLKLARMSPDAGAYLTSRSPDGPQ--F 291 Query: 76 AQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRLRERLIISGD--------- 123 + +A + G ++ + L G+SS V + + L G Sbjct: 292 EALKAELAKLRA-ADGGNEEQIVISLDKLLRPGDSSPEVANIVKALAKHGSETLKTNHAA 350 Query: 124 -LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNL 180 L G S + + + V+ FQ GL G++ +T+ AM +I +L V + Sbjct: 351 TLASYTGGSD-YSPEIVALVEDFQKERGLKADGVIGQATVRAMTGGDTNASKIDKLVVAM 409 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + L + +G RYV++N PA +GK L V+VG + QT I + F Sbjct: 410 EQARWLP-EDLGSRYVMINQPAYMAYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEF 468 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP+W +P+SII +M+ LR DP YL + + G V VDW N RQ Sbjct: 469 NPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNGHAVASSSVDWYGST-DNVSVRQ 526 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P NA+ KI F + + YMHDTP F +R + GCVR+ N + +L T Sbjct: 527 PPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLSNPRAMAAAVLGTT 586 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + + + + V++ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 587 VDD----VAKQIASGQNHAVRVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDA 636 >gi|46202780|ref|ZP_00052619.2| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 465 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 104/359 (28%), Positives = 164/359 (45%), Gaps = 7/359 (1%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IA 76 +L G L + + + + I +IS + Sbjct: 104 LLRFGRDLSVGAVLPARNLGGFGAETRGEFDGARFLKALAEGKPLTEQIDVISPQYVGYM 163 Query: 77 QTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + + I + GGWP +P L G++ V LR RLI SGDL +D Sbjct: 164 RLRDGLEKARAIAAAGGWPSIPDGAKLVPGDTDDRVPVLRRRLIASGDLGDGLAEGRTYD 223 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A + AVK FQ+RHGL+P + TL +NVP D R RQ+ VN+ R + + G + Sbjct: 224 APLAEAVKRFQLRHGLEPDATIGGKTLAHLNVPADARARQIAVNMERWRWMP-HSFGRHH 282 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNI A +E VE+G V + V+VG V TP + + ++ ++ NP W +P SI K++ Sbjct: 283 IAVNIAAQQMEVVEDGAVAMSMRVVVGDVKHPTPSMSTTMSSVVLNPAWRVPTSIANKEI 342 Query: 256 MALLRQDPQYLKDNNIHMIDE--KGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMASTK 312 + LR+DP YL + + ++D E + VDWN+ + + RQ PG NA+ K Sbjct: 343 LPKLRKDPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRLRQPPGPDNALGQLK 402 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 ++ YMHDT + R + GCVR+ ++L +L + IE + Sbjct: 403 FNLTDSDDIYMHDTNNRRVXGRSYRALSHGCVRLERPVELGDVMLGPRRKDNWRKIEAI 461 >gi|157375588|ref|YP_001474188.1| peptidoglycan binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157317962|gb|ABV37060.1| peptidoglycan-binding domain 1 protein [Shewanella sediminis HAW-EB3] Length = 465 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 172/360 (47%), Gaps = 6/360 (1%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRE 116 + S P S + + + W P + L G+ S+ + Sbjct: 99 DLYQRAISLEPTSSD--YLPVSNRLRYLLWLSEHYPWKPLVIGGWLKEGDYHKSIPEISF 156 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 RL + GDLD + + + +++ FQ RHGL ++ TL +N R R L Sbjct: 157 RLNMLGDLDSYDRNNKQLNRTLATSLLRFQRRHGLKQDAIIGPETLRWLNASPKNRARLL 216 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 N ++ L + R++L+NIPA + V++ ++ L+S VIVG+ RQTP+L S+I+ Sbjct: 217 ANNFLKKSSYLA-SLDSRFLLINIPAFEMVLVDHDEIQLKSRVIVGKPYRQTPMLSSQIS 275 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 ++ NP W +PR ++ +D++ +R++ Y+ N + D KG + +W F Sbjct: 276 NVVLNPSWRVPRRLLWRDLLPKVRENGSYITQRNFDVFDAKGVIIEKSPDEWQELAQGRF 335 Query: 297 IFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 +R Q PG+ N + K F + N Y+HDT + LF R +SGC+RV N+ L Sbjct: 336 PYRLVQRPGEENTLGRYKFYFANDYNVYLHDTVDKSLFEESNRALSSGCIRVENVESLAN 395 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W+ + + ++ V+ +KT L + VH VY +AW + QFR+DIY ++ Sbjct: 396 WMASNLVRDKQTWVDMQVERQKTQWFSLDDSLAVHLVYWTAWIDSEGDSQFRNDIYNQNS 455 >gi|261211004|ref|ZP_05925294.1| hypothetical protein VCJ_001260 [Vibrio sp. RC341] gi|260839979|gb|EEX66579.1| hypothetical protein VCJ_001260 [Vibrio sp. RC341] Length = 522 Score = 318 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 99/391 (25%), Positives = 181/391 (46%), Gaps = 20/391 (5%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 ++ + +A + I S + A ++ + YQ +L+ + Sbjct: 132 GQLNKPLAAPSEEAQLALHMAIGSQTLVQLIDEYSPKDPAY-QQLLHTYQFLLATES-HD 189 Query: 97 LP----IRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P G+S L RL + D+ + +D + A+K FQ HGL Sbjct: 190 IPLYEQTGLKREGDSLTHRDALLRRLSLVNLDITDVREDVAFYDQSLVKAIKQFQSMHGL 249 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G++ T++ +N V R+ L +N R++ Q ++VN+P ++ + G Sbjct: 250 KTDGVIGPETIKWLNKSVTERVTLLALNAERLRLW--QTPQDTVIVVNVPGFDMKYWDAG 307 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + + V+VGRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D QYL ++ I Sbjct: 308 REVFEAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDHQYLAEHQI 367 Query: 272 HMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 +I + V +E+DW + +P + RQ G NA+ K + Y+HDTP Sbjct: 368 EIIRGWSDPEVVDPQEIDWATVDPETFPYRLRQQAGVQNALGMYKFNTPNSRAIYLHDTP 427 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LFNN R +SGC+RV N LL + I T + L +P Sbjct: 428 SKHLFNNAARAFSSGCIRVENAQKFAQALL------DQQGIVLNDVPDTTKTIALKKRIP 481 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 V +Y + W + ++ +RDDIY D++ +G Sbjct: 482 VQIIYQTVWY-EGGVLNYRDDIYRYDSLALG 511 >gi|294141900|ref|YP_003557878.1| hypothetical protein SVI_3129 [Shewanella violacea DSS12] gi|293328369|dbj|BAJ03100.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 615 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 97/461 (21%), Positives = 194/461 (42%), Gaps = 62/461 (13%) Query: 19 ILPMGLSLVEKPIHASVL------DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 ++ L+ ++ S L DE I + + V + S P + Sbjct: 144 VITYATHLINGKVNPSTLEKTWNYDESIIKLDTIVAELNRHVDQRDVAQRLLSLSPQLDA 203 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLS 131 Q + A+ Y+ + +P + + L G+ + ++ + +RLI L P +S Sbjct: 204 --YTQLKSALKKYRLLADTADFPNIKYQGLIKAGSVTPTLALIADRLIQLNYLSPQADIS 261 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + AV+ +Q H L G++ T+ ++NVP R Q+++N+ R + L + Sbjct: 262 N-YSHEFVGAVRAYQSSHSLQADGIIGKGTINSLNVPFAYRADQIRINMERARWLSS-DL 319 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 Y+++N+ L ++G++ ++ +++G++ +TPI SRI+ ++ NP W +PRSI Sbjct: 320 SQEYIIINLAGYELWMYKDGQLDWQTDIVIGKISSKTPIFKSRISYLVVNPTWTVPRSI- 378 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMA 309 ++ +++DP Y+ + + D GK+V + +DW +P + F Q P K NA+ Sbjct: 379 NPGLINKIKRDPSYIDKQHYMLKDSSGKKVDILAIDWQEVDPEKFKYWFVQKPWKNNALG 438 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-- 367 K F +R+ Y+HDTP LF+ R + GC+R++N ++L LL + + Sbjct: 439 QVKFIFPNRDAIYLHDTPTKYLFSLTDRAFSHGCIRIKNPLELAEKLLNENRPATLEKNL 498 Query: 368 ---------------------------------------------IEEVVKTRKTTPVKL 382 +++ +T + L Sbjct: 499 QIQNNKLAKRREESQLNNLSTDQVSVAPRSEPLQSPLTQPSADELLKKTFALGETQKLYL 558 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + + +Y +A + + F D+Y D + + P Sbjct: 559 DEPMDILIMYWTA-ASSKGKLTFYHDVYKRDEPLMLQLKRP 598 >gi|89074934|ref|ZP_01161384.1| hypothetical amidase [Photobacterium sp. SKA34] gi|89049331|gb|EAR54894.1| hypothetical amidase [Photobacterium sp. SKA34] Length = 587 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 102/352 (28%), Positives = 174/352 (49%), Gaps = 20/352 (5%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA- 136 T AIA YQ++ + + G + + L + L GD+D + +D Sbjct: 222 TMDAIAKYQNLPAHTLVKSNFKQAYRKGATLPNGHELIKVLYTLGDMDQAD-----YDRL 276 Query: 137 ----------YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 V ++K FQ RHGL G++ ++T++ + +P R+L +N +R+ L Sbjct: 277 SVEPNITNTGAVFESLKTFQKRHGLANDGIIGAATVQQLVMPYGDIARRLALNKLRVATL 336 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + G ++ VNIP LE + G V S VIVGR +R T + S I ++ NPYW + Sbjct: 337 NKHTEGRPHIWVNIPNYKLEVFDKGNVVFESKVIVGRDNRPTNLFSSAITTMVVNPYWNV 396 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPPNFI--FRQDP 302 P +I Q D++ ++ D YLK +N+ +++ + ++W + P F F+Q P Sbjct: 397 PITIKQHDVIPKVKHDIDYLKQHNMQILNSWRDRTVISPSSINWETVNPKTFPHEFQQGP 456 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K + ++HDTP LF+ R +SGCVRV DL ++++ Sbjct: 457 GPRNSLGRVKFLMPNDYAIFLHDTPSRGLFSKNKRDLSSGCVRVERAYDLANYVIEYQNR 516 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + ++++ +K V L+ + V FVY++AW D +Q R+DIYG D+ Sbjct: 517 GNIPKFKQMLDAQKQKTVSLSKRIDVDFVYLTAWVDHDGNVQMREDIYGYDS 568 >gi|86357997|ref|YP_469889.1| hypothetical protein RHE_CH02382 [Rhizobium etli CFN 42] gi|86282099|gb|ABC91162.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 633 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 104/411 (25%), Positives = 171/411 (41%), Gaps = 24/411 (5%) Query: 19 ILPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L V I + + + + + + I S P + Sbjct: 215 VLAFVQDTVRGRIDPNKISGYHDFQRKVVNLAPVLKLARMSPNAGAYIASRSPDSPQ--F 272 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---- 130 + +A + S + L G SS + + + L G Sbjct: 273 EALKAELAKLRAADSNEEQIVISLQGLLKPGESSSEIANIVKALQKHGSETLKTDHAATF 332 Query: 131 -----SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRI 183 S + + S V+ FQ HGL P G++ +T+ AM +I +L V + ++ Sbjct: 333 AAYAGSSDYSPDIVSLVEDFQKEHGLKPDGVIGQATVRAMTGGDTNTSKIDKLVVAMEQV 392 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + +G RYV++N PA +GK L V+VG + QT + I + FNP+ Sbjct: 393 RWLP-EDLGSRYVMINQPAYMAYYHNDGKEQLSMRVVVGGKNNQTYFFNDEIETVEFNPF 451 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P+SII +M+ LR DP YL + + G V VDW N RQ P Sbjct: 452 WGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNGHAVASSSVDWYGSTA-NVSVRQPPS 509 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ KI F + + YMHDTP F +R + GCVR+ N + +L Sbjct: 510 SDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLANPRAMAAAVL----GT 565 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + + + + VK+ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 566 TADDVARQIASGQNHAVKVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDA 616 >gi|218709906|ref|YP_002417527.1| hypothetical protein VS_1919 [Vibrio splendidus LGP32] gi|218322925|emb|CAV19102.1| conserved hypothetical protein [Vibrio splendidus LGP32] Length = 518 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 167/370 (45%), Gaps = 31/370 (8%) Query: 59 VDMGIDSDIPIIS-----KETIAQTEKA----IAFYQDILSRGGWPELPIRPLHLGNSSV 109 + + S P + K T + E A I Y+ LG+ Sbjct: 163 LLEMVLSYAPPVGDFDQFKATYSVLETASELNIERYRQ-----------KGLKRLGDPLS 211 Query: 110 SVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L ER+ + G D FD +++A+K FQ HGL G+V T++ +N+ Sbjct: 212 DKPILVERIALVGVDTSMIAVDFPVFDQDLQTAIKSFQRMHGLTDDGIVGPDTIKWINMS 271 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 D R+ L +N R++ + ++VN+P+ ++ E+G+ S V+VGR R+T Sbjct: 272 FDERLTSLALNAERVRLWPRDR--DSLIVVNVPSFDMKYWEDGEEVFESKVVVGRKSRKT 329 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEV 286 P+L ++ ++ NP W +P I+ KD++ ++ D YL+ +N +ID + V ++ Sbjct: 330 PLLEINLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRTMETVDTTDI 389 Query: 287 DWNSPE--PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 DW + + RQ G NA+ K ++ Y+HDTP LFN+ R +SGC+ Sbjct: 390 DWQTINFNSFPYRMRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCI 449 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 RV + +L L ++ T V+L +PVH +Y + + IQ Sbjct: 450 RVEHAEELAELLFATKVRKVPNQSNDLAP---NTKVRLKKRIPVHIIYQTVLFEEGG-IQ 505 Query: 405 FRDDIYGLDN 414 +R DIY D Sbjct: 506 YRGDIYQYDK 515 >gi|312113144|ref|YP_004010740.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311218273|gb|ADP69641.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 725 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 92/390 (23%), Positives = 161/390 (41%), Gaps = 38/390 (9%) Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERLI 119 + P E + +A+ G +P G+ + +R+RL Sbjct: 279 YLRGLHP--KSEQFKRLRQALIALGKTTDSGTSSIRIPAGKTFKPGDDDAQIALIRKRLN 336 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV----PVDLRIRQ 175 +D + AV FQ GL+ +G+VD A+N VD + + Sbjct: 337 A----GLDAPRDTIYDEALLVAVNRFQKERGLNVNGIVDKKLRAALNEGAGGSVDEKKMR 392 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L VN+ R + + +G YV +IP + + G+V + ++VG+ QTP +++ Sbjct: 393 LIVNMERWRWMP-DDLGEFYVWNSIPEQTTRVFDRGRVAFQERIVVGKPTSQTPSFSAKM 451 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQ-------------------------DPQYLKDNN 270 ++FNP W +P I ++ LR+ L+ Sbjct: 452 QFVIFNPEWGVPDGIKANEIAPKLRRAAPSGPSDDLFSFLGGRSGGGGGGGASSVLQRLG 511 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + G++V + VDW+ + + F Q G NA+ K F ++++ YMHDTPE Sbjct: 512 GLRVTYNGRDVDPDSVDWSRVDARRYSFIQPAGPRNALGVVKFRFPNKHDVYMHDTPEKS 571 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF + R + GC+R +N + +L + I +++ +TT KL +PVH Sbjct: 572 LFGSATRAFSHGCMRTQNPVRFAEVILAYDNGTTPEQIRRQIESGQTTENKLTKTIPVHM 631 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 VY +A + I++ D+YGLD + Sbjct: 632 VYFTAAPDEKGDIRYFSDLYGLDARVASAL 661 >gi|91975886|ref|YP_568545.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91682342|gb|ABE38644.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB5] Length = 716 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 107/434 (24%), Positives = 174/434 (40%), Gaps = 45/434 (10%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS--IVNDRFDNFLA-RVDMGIDSDIPIISKETI 75 ++ +H S I H + A +DS P Sbjct: 245 MMDYARQAQSGRMHWSQAGSDIQYPEHPIDPAEVLANVTTAKDASAALDSYNPPHKP--Y 302 Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLG--NSSVSVQRLRERLIISGDLD 125 + +K +A + I +P R V +LR +L I+ D Sbjct: 303 RELKKKLAELRGESGMPVLKIAEGETLKFVPARKKQPAVTMDDPRVPQLRAKLGITED-- 360 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIK 184 S +DA V AV+ FQ L P+G++D T++ +N P R I + VN+ R + Sbjct: 361 ---ADSSTYDAKVAEAVRKFQRSADLKPTGVLDDRTVKVLNTPKRDRSIDTIIVNMERWR 417 Query: 185 KLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIM 239 L Q +G YV++NIP +L+ ++NG + V+ G+ TP+L + I Sbjct: 418 WLPRQLGAASIGNAYVILNIPDYTLKVMQNGAQVWTTRVVTGKPGKHATPLLTETMKYIT 477 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +P SII + + L QDP L + M + + Sbjct: 478 VNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRD---------------GSIHIS 522 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK- 358 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 523 QPPGEANALGRVRFNFPNKFLVYQHDTPDKNLFARDERAFSHGCMRVQNPDQYAAALLNI 582 Query: 359 --DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 ++ I + R +K T +PV+ Y +A+ D +Q R DIYG D+ Sbjct: 583 TMPNERYTPEKIRS-MYGRSEIDLKFPTPIPVNITYQTAFVDDDGKLQIRKDIYGRDSAM 641 Query: 417 VGIIPLPEDHPIDS 430 + I+ + +++ Sbjct: 642 LAILRNDKGKNLEA 655 >gi|148978885|ref|ZP_01815205.1| hypothetical protein VSWAT3_22280 [Vibrionales bacterium SWAT-3] gi|145962083|gb|EDK27369.1| hypothetical protein VSWAT3_22280 [Vibrionales bacterium SWAT-3] Length = 519 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 98/370 (26%), Positives = 166/370 (44%), Gaps = 31/370 (8%) Query: 59 VDMGIDSDIPIIS-----KETIAQTEKA----IAFYQDILSRGGWPELPIRPLHLGNSSV 109 + + S P + K T + A I Y+ LG+ Sbjct: 164 LLEMVLSYAPPVGDFDQFKATYSVLNTASELGIERYRQ-----------KGLKRLGDKLS 212 Query: 110 SVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L ER+ + G D S FD ++ A K FQ HG+ G++ T++ +N+ Sbjct: 213 DKATLVERIALVGVDTSMIAVDSPRFDRDLQIATKAFQRMHGITADGIIGPDTIKWINMG 272 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 D R+ L +N R + + ++VN+P+ ++ E+G+ S V+VGR R+T Sbjct: 273 FDDRLTSLALNAERARLWPRNR--DSLIVVNVPSFDMKYWEDGEEVFESKVVVGRKSRKT 330 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEV 286 P+L +++ ++ NP W +P I+ KD++ ++ D YL+ +N +ID V E+ Sbjct: 331 PLLEIKLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRSMETVDTTEI 390 Query: 287 DWNSPE--PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 DW + + RQ G NA+ K ++ Y+HDTP LFN+ R +SGC+ Sbjct: 391 DWQTINFNSFPYRMRQQAGSSNALGLYKFNTPNKRAIYLHDTPSKSLFNDDFRAYSSGCI 450 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 RV + +L L +++ T V+L +PVH +Y + ++ IQ Sbjct: 451 RVEHAEELAELLFATKVKKVPNQSDDLAP---NTKVRLKKRIPVHIIYQTVLFGEEG-IQ 506 Query: 405 FRDDIYGLDN 414 +R DIY D Sbjct: 507 YRGDIYQYDK 516 >gi|84393105|ref|ZP_00991870.1| Uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] gi|84376262|gb|EAP93145.1| Uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] Length = 512 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 107/417 (25%), Positives = 179/417 (42%), Gaps = 33/417 (7%) Query: 14 FFVYLILPMGLSLVEKPIHA-SVLDEIINESY-HSIVNDRFDNFLARVDMGIDSDIPIIS 71 F YL L K + L + H ++ + + + S P + Sbjct: 110 FIYYLSYVENAPLAGKEWYFSGKLHSKLPAPSPHILMRLKSSVANDYLLEMVLSYAPPVG 169 Query: 72 -----KETIAQTEKA----IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 K T + E A I Y+ LG+ L ER+ + G Sbjct: 170 DFNQFKATYSVLETASELNIERYRQ-----------KGLKRLGDELSDKAVLVERIALVG 218 Query: 123 -DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D FD +++A+K FQ HGL G+V T++ +N+ D R+ L +N Sbjct: 219 VDTSMIAVDFPEFDRDLQTAIKSFQRMHGLTDDGIVGPDTIKWINMSFDDRLTSLALNAE 278 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ + ++VN+P+ ++ E+G+ S V+VGR R+TP+L ++ ++ N Sbjct: 279 RVRLWPRDR--DSLIVVNVPSFDMKYWEDGEEVFESKVVVGRKSRKTPLLEINLDSVILN 336 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPE--PPNFI 297 P W +P I+ KD++ ++ D YL +N +ID + V E+DW + + Sbjct: 337 PTWNVPWKIMVKDILPKVKADESYLDTHNFQVIDGWRTMETVDTTEIDWQTINFNSFPYR 396 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ G NA+ K ++ Y+HDTP LFN+ R +SGC+RV + +L L Sbjct: 397 MRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLF 456 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +++ T V+L +PVH +Y + + IQ+R DIY D Sbjct: 457 ATKVRKVPNQSDDLAP---NTKVRLKKRIPVHIIYQTVLFEEGG-IQYRGDIYQYDK 509 >gi|86148447|ref|ZP_01066737.1| Uncharacterized protein conserved in bacteria [Vibrio sp. MED222] gi|85833744|gb|EAQ51912.1| Uncharacterized protein conserved in bacteria [Vibrio sp. MED222] Length = 512 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 100/370 (27%), Positives = 167/370 (45%), Gaps = 31/370 (8%) Query: 59 VDMGIDSDIPIIS-----KETIAQTEKA----IAFYQDILSRGGWPELPIRPLHLGNSSV 109 + + S P + K T + E A I Y+ LG+ Sbjct: 157 LLEMVLSYAPPVGDFDQFKATYSVLETASELNIERYRQ-----------KGLKRLGDELS 205 Query: 110 SVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L ER+ + G D FD ++SA+K FQ HGL G+V T++ +N+ Sbjct: 206 DKTILVERIALVGVDTSMIAVDFPVFDQDLQSAIKSFQRMHGLTDDGIVGPDTIKWINMS 265 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 D R+ L +N R++ + ++VN+P+ ++ E+G+ S V+VGR R+T Sbjct: 266 FDERLTSLALNAERVRLWPRDR--DSLIVVNVPSFDMKYWEDGEEVFESKVVVGRKSRKT 323 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEV 286 P+L ++ ++ NP W +P I+ KD++ ++ D YL+ +N +ID + V ++ Sbjct: 324 PLLEINLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRTMETVDTTDI 383 Query: 287 DWNSPE--PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 DW + + RQ G NA+ K ++ Y+HDTP LFN+ R +SGC+ Sbjct: 384 DWQTINFNSFPYRMRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCI 443 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 RV + +L L ++ T V+L +PVH +Y + + IQ Sbjct: 444 RVEHAEELAELLFATKVRKVPNQSNDLAP---NTKVRLKKRIPVHIIYQTVLFEEGG-IQ 499 Query: 405 FRDDIYGLDN 414 +R DIY D Sbjct: 500 YRGDIYQYDK 509 >gi|293396754|ref|ZP_06641030.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291421018|gb|EFE94271.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 572 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 91/295 (30%), Positives = 143/295 (48%), Gaps = 8/295 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + + + + VK FQ GL G++ T E +NV +R L +N+ R++ Sbjct: 264 AAASMADNLYSSELVEGVKRFQKWQGLSTDGIIGVRTREWLNVSPQMRASLLALNIQRLR 323 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 324 ILPGRVSNG--IMVNIPNYSLVYYQNGNEVLSSRVIVGRPSRKTPMMSSALNNVVVNPPW 381 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP--PNFIFR 299 +P +++++D++ +D Y + + ++ + +DWN + R Sbjct: 382 NVPTTLVREDIVPKAMRDANYFRKHGYTVLSGWSNDAEVIDPSMIDWNMVSARNFPYRIR 441 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 442 QAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQD 501 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W+ + +K TT V + +PV Y++AW D QFR DIY DN Sbjct: 502 A-GWNNSRVSSTLKQGNTTYVNVRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDN 555 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 6/117 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + S + + +++N + + ++S P + Sbjct: 92 YLQFVSSIGANGNNWLYSNIPYKLATPPGTVINQWQLAVRQGKAQAYVESLAPQHPQ--Y 149 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A+ +A+ + WP L P L G S + LRE L +G + S Sbjct: 150 AKMHQALRDM--LADSRPWPRLANGPSLRPGEISNDIPALREILQRTGMMSDIPAAS 204 >gi|209549608|ref|YP_002281525.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535364|gb|ACI55299.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 636 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 102/377 (27%), Positives = 165/377 (43%), Gaps = 24/377 (6%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSV 109 V I S P ++ + +A + + + + L G+SS Sbjct: 253 LARMSPDVGAYIASRSPDGAQ--FEALKAELAKLRAVDGGNEERIVVSLDKSLKPGDSSP 310 Query: 110 SVQRLRERLIISGD----------LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + + + G L G S + + S V+ FQ GL G++ Sbjct: 311 EIANIVKAIGKHGSETLKTDHAATLAAYAG-STDYSPDIVSLVEAFQQERGLKADGVIGQ 369 Query: 160 STLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +T+ AM +I +L V + + + L + +G RYV++N PA + +GK L Sbjct: 370 ATVRAMTGGDTNASKIDKLVVAMEQARWLP-EDLGSRYVMINQPAFMVYYHNDGKEQLSM 428 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VG + QT I + FNP+W +P+SII +M+ LR DP YL + + Sbjct: 429 RVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVN 487 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G V VDW N RQ P NA+ KI F + + YMHDTP F +R Sbjct: 488 GHAVASSSVDWYGSTN-NVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMR 546 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GCVR+ N + +L T + + + T + VK+ ++PV+ Y +AW Sbjct: 547 ALSHGCVRLANPRAMAAAVLGTTVDD----VAKQIATGQNHAVKVPQKIPVYVSYFTAWP 602 Query: 398 PKDSIIQFRDDIYGLDN 414 KD ++++ DD+YG D Sbjct: 603 NKDGVVEYFDDVYGRDG 619 >gi|190892061|ref|YP_001978603.1| hypothetical protein RHECIAT_CH0002473 [Rhizobium etli CIAT 652] gi|190697340|gb|ACE91425.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 636 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 101/414 (24%), Positives = 172/414 (41%), Gaps = 29/414 (7%) Query: 19 ILPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L V I + + + + + + + S P + Sbjct: 217 VLAFVQDTVRGRIDPNKISGYHDFQRKVVNLAPVLKLARMSPDAGAYLTSRSPDGPQ--F 274 Query: 76 AQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRLRERLIISGD--------- 123 + +A + G ++ + L G+SS V + + L G Sbjct: 275 EALKAELAKLRA-ADGGNEEQIVISLDKLLRPGDSSPEVANIVKALAKHGSETLKTNHAA 333 Query: 124 -LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNL 180 L G + + + V+ FQ GL G++ +T+ AM +I +L V + Sbjct: 334 TLASYAGGRD-YSPEIVALVEDFQKERGLKADGVIGQATVRAMTGGDTNASKIDKLVVAM 392 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + L + +G RYV++N PA +GK L V+VG + QT I + F Sbjct: 393 EQARWLP-EDLGSRYVMINQPAYMAYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEF 451 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP+W +P+SII +M+ LR DP YL + + G V VDW N RQ Sbjct: 452 NPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNGHAVASSSVDWYGST-DNVSVRQ 509 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P NA+ KI F + + YMHDTP F +R + GCVR+ N + +L T Sbjct: 510 PPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLSNPRAMAAAVLGTT 569 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + + + + V++ ++PV+ Y +AW K+ ++++ DD+YG D Sbjct: 570 VDD----VAKQIASGQNHAVRVPQKIPVYVSYFTAWPNKEGVVEYFDDVYGRDA 619 >gi|92116782|ref|YP_576511.1| peptidoglycan binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91799676|gb|ABE62051.1| Peptidoglycan-binding domain 1 [Nitrobacter hamburgensis X14] Length = 775 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 101/429 (23%), Positives = 177/429 (41%), Gaps = 41/429 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLA--RVDMGIDSDIPIISKETI 75 ++ +H S + I H N +DS P ++ Sbjct: 308 MMNYARQAQSGRMHWSQVGADIQYPEHPIDPEQVLTNVTTAKDASAALDSYNP--PQKLY 365 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP---LHLG--NSSVSVQRLRERLIISGDLDPSKGL 130 + ++ +A + S G E+ P V ++R +L ++ Sbjct: 366 RELKQKLAELRK-TSEGPVVEIAEGPSLVFRKNAVMEDPRVPQIRAKLGVT-----QNPD 419 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMRIKKLLEQ 189 FDA V +AV+ FQ R+ L P G+ ++T+ A+N P +I + VN+ R + L + Sbjct: 420 DAHFDADVAAAVREFQTRNHLQPDGIAGNNTIRALNGPRKGHQIDTIIVNMERWRWLPRE 479 Query: 190 ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMFNPYW 244 +G Y ++NIP +L+ +++G + V+VG+ TP+L + I NP W Sbjct: 480 LGAPSLGNAYAILNIPDYTLKVMQHGAQLWSTRVVVGKPGIHATPLLTETMKYITVNPTW 539 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P SII K+ + L+QDP L+ + + Q PG Sbjct: 540 NVPPSIIYKEYLPALQQDPTVLERMGLKL---------------ERDRNGGIHISQPPGD 584 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK---DTP 361 NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 585 RNALGRIRFNFPNKFLVYQHDTPDKYLFAKEKRAFSHGCMRVQNPDQYAATLLNIALPQE 644 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 ++ I + RK +K T +PV+ Y +A+ +Q R D+YG D + ++ Sbjct: 645 HYTPEKIRG-MYGRKEFDIKFPTPIPVNITYQTAFVDHAGKLQIRPDVYGSDAKMLALLR 703 Query: 422 LPEDHPIDS 430 P+ +++ Sbjct: 704 NPKGRDLEA 712 >gi|146300086|ref|YP_001194677.1| hypothetical protein Fjoh_2331 [Flavobacterium johnsoniae UW101] gi|146154504|gb|ABQ05358.1| Uncharacterized protein [Flavobacterium johnsoniae UW101] Length = 519 Score = 315 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 181/345 (52%), Gaps = 26/345 (7%) Query: 75 IAQTEKAIAFYQDILSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + + + Y+ + W + P + L S ++ ++R RL + GDL Sbjct: 185 YYKLQGVLKQYKKLEKSSKWKPIVAETPYKDLRPDAVSPTIAQVRTRLYLLGDLKQDSK- 243 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S +D + V +++R+G P+ ++ ++ MN+PV +++ L +N+ RI+ + + Sbjct: 244 SDFYDRELMDGVMKYKVRNGFKPNYILAEEHIKEMNIPVSDKVKTLMLNMERIRAISPEL 303 Query: 191 MG-LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + YVLVN+P+ L V+NGK+ L S+V VG +T I + +I+RI+F+PYW +P+S Sbjct: 304 VNNDEYVLVNVPSYELIYVKNGKIELTSSVFVGSPLTKTTIFNGQIDRIVFSPYWTVPQS 363 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I+Q ++ + + DP YL + N+ M++ + RQ PG N++ Sbjct: 364 IVQNELRSKIAADPNYLAEKNMEMVNGQ--------------------VRQKPGPDNSLG 403 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + ++ YMHDTP LF+ R + GC+ V+ +L V +LKD P W++ I+ Sbjct: 404 LVKFMFPNSDDIYMHDTPSKTLFDFEKRTFSHGCINVKMAKELAVAMLKDYPEWTQAKID 463 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + ++ + + KL+ +VP++ Y ++ ++ I F D+Y D Sbjct: 464 KAMEGKVESSFKLSKKVPIYITYFTSLVNENGQIGFFQDVYEKDA 508 >gi|260768291|ref|ZP_05877225.1| hypothetical protein VFA_001342 [Vibrio furnissii CIP 102972] gi|260616321|gb|EEX41506.1| hypothetical protein VFA_001342 [Vibrio furnissii CIP 102972] Length = 517 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 169/382 (44%), Gaps = 12/382 (3%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSRGGWPELP 98 + R +A GI I + + Q A + I + + Sbjct: 136 HSLPLPSEQARLALHIAVGIHGITDLIDEYTPQDAAYRQLVNAYRYLSQIEPQMLSVYVQ 195 Query: 99 IRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R G+ + L +RL + D+ +D + VK FQ HGL G++ Sbjct: 196 ARLKRPGDKLEDRRTLIQRLSLVNIDVAGISDNVTWYDNSLVEPVKQFQKMHGLKIDGII 255 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 TL+ +N+ V R+ L +N R++ Q ++VN+P +L+ +GK S Sbjct: 256 GPDTLKWLNMKVPERLALLALNAERMRLWTTQD--DTVIVVNVPGYNLKYWYSGKPVFES 313 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VGRV R TP++ ++++ ++ NP W +P I+ +D++ + ++D YL ++I +I+ Sbjct: 314 KVVVGRVTRPTPVMSTKLDSLILNPTWNVPHKIMVEDILPMTKRDASYLSRHHIDIIESW 373 Query: 278 --GKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + +DW + P + RQ G NA+ K ++ Y+HDTP LFN Sbjct: 374 KSDQTLDPALIDWQNVNPKTFPYRMRQQAGNQNALGLYKFNTPNKRAIYLHDTPSKHLFN 433 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 + R +SGC+RV + LL+ I + L +PVH +Y Sbjct: 434 HPTRAFSSGCIRVEHADQFATTLLETQGINDSELIPNPDAA--NRAIPLKKRIPVHIIYQ 491 Query: 394 SAWSPKDSIIQFRDDIYGLDNV 415 + W + + +RDDIY LD + Sbjct: 492 TVWY-EGGEVHYRDDIYRLDRI 512 >gi|157375514|ref|YP_001474114.1| hypothetical protein Ssed_2377 [Shewanella sediminis HAW-EB3] gi|157317888|gb|ABV36986.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 483 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 14/364 (3%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 R+ I + +P + I + I Y+ + WP + LG SS V++LR Sbjct: 123 RLSEFIGTILPSF--DEIYRLRNMIGEYKKKV-NVKWPTMSQYEFRLGQSSNEVKQLRWM 179 Query: 118 LIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 L GDL+ S+ +D V +K FQ+RHGL+ +G +D T+EA+NV R+ Sbjct: 180 LTQLGDLEHSELTRYREAIYDPMVIDGIKSFQLRHGLNVNGNLDKYTVEAINVTPLQRVE 239 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 Q+Q NL R L + V +NIP L E G V L+ VI+G+ TPIL + Sbjct: 240 QMQRNLWRW-ITLSTPNAEKLVWINIPGYQLSIFEQGSVTLQMKVIIGKPSSPTPILSTY 298 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSP 291 + ++ NP W P SII+ +++ L +P YL + K + + +VD Sbjct: 299 LTKLTINPSWRPPASIIKSELLPLNAAEPGYLNHKQFELHGVGLNKKHVIKLGDVDSKQL 358 Query: 292 EP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + Q PG+ NA+ + +R++ Y+HDTP LF VR + GC+R+ Sbjct: 359 PTLLRQYRLVQAPGEDNALGKMRFTIVNRHSIYLHDTPAKQLFKRNVRALSHGCIRLEKP 418 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 I L +L++ +++ V T L++ +PV+ Y ++W +Q R DI Sbjct: 419 IALSSYLVETDER--ARELQKAVGGSGTRHFSLSSPIPVYITYHTSWVDAAGKLQVRPDI 476 Query: 410 YGLD 413 Y LD Sbjct: 477 YNLD 480 >gi|126663199|ref|ZP_01734197.1| hypothetical protein FBBAL38_07595 [Flavobacteria bacterium BAL38] gi|126624857|gb|EAZ95547.1| hypothetical protein FBBAL38_07595 [Flavobacteria bacterium BAL38] Length = 529 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 101/420 (24%), Positives = 192/420 (45%), Gaps = 25/420 (5%) Query: 18 LILPMGLSLVEKPIHASVLD------EIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS 71 ++L + ++ L+ + +++ + + + + + Sbjct: 118 ILLTENFEKLSNHLYKGKLNPKELYNDWDLNPKEIALSNLLEKGIKEKTIASTFNALKPN 177 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRPLH------LGNSSVSVQRLRERLIISGDLD 125 +K++ + P + + + L ++ + ++++RL D Sbjct: 178 HIVYKSLKKSLLEINKL------PNISFQKIEIKNKIILNDTLPEMVKIKKRLAYWKDYK 231 Query: 126 P-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 ++ +D AVK FQ RHGL G++ T++A+N + RI Q+ NL R K Sbjct: 232 NKDSLITWVYDTITYKAVKRFQARHGLAQDGVIGIGTIKALNTTKNERIEQIFANLERWK 291 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +G Y++ NIP L V N + ++VG R+TPIL S+++ +FNP W Sbjct: 292 WYP-FDLGEEYLIANIPEYMLNYVTNNDTVAKYRIVVGTKKRKTPILTSKLSNFVFNPTW 350 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 IP +II++D+ ++ Y ++ + + KG EV E +WN + ++ + Q PG Sbjct: 351 TIPPTIIKEDLTPAASKNRNYFPSRSLTIYNNKGTEVSPE--EWNPAKANSYRYVQKPGY 408 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL--KDTPT 362 N++ K+ F +R++ Y+HDT F+ R +SGCVRV + L +L + Sbjct: 409 NNSLGLVKLNFLNRHSVYLHDTNHRDYFSKTYRSLSSGCVRVETPLVLVKQILVKSNQEK 468 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 WS I+ ++K KT V + V ++ Y ++W +++ +QFR+DIY LD + Sbjct: 469 WSGSEIDSIIKLEKTKTVSIKDTVNIYIFYWTSWF-ENNKLQFREDIYDLDKSLYEKLKN 527 >gi|163759687|ref|ZP_02166772.1| hypothetical protein HPDFL43_10047 [Hoeflea phototrophica DFL-43] gi|162283284|gb|EDQ33570.1| hypothetical protein HPDFL43_10047 [Hoeflea phototrophica DFL-43] Length = 619 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 104/432 (24%), Positives = 170/432 (39%), Gaps = 25/432 (5%) Query: 9 KILYCFFVYLILPMG---LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 K L F + L L + L + + + ++ + + Sbjct: 189 KELMAFEMRLSLAIANYILDASRGRVDPNRISGY-HDFKRKNPDLGSRLAALSKSEDPAA 247 Query: 66 DIPIISKET--IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV----QRLRER- 117 + + + + QD+ G E+ L G S+ + + ++ Sbjct: 248 ALLAHNPQGAHFEALAAELKRLQDL-DEGDRIEIAENILLKPGQSNPELSNVMAAISKKA 306 Query: 118 ---LIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLR 172 L L + +D + VK FQ GL P G+V +T AM + + Sbjct: 307 SDELKAEHALLFASYAGKPEYDEELVQLVKDFQKELGLKPDGVVGPATRRAMVGITNADK 366 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 I ++++ + R + L + R V +N PA + GK L V+VG+ QT Sbjct: 367 IEKVRLAMERARWLP-GVLASRRVFINQPAYTASYYNGGKQELSMRVVVGKRSNQTYFFD 425 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 I + FNPYW +P+SII +M+ LR DP YL + + GK V V+W++ Sbjct: 426 DEIELVEFNPYWGVPQSIIFNEMVPKLRNDPGYLDRSGYEVTIG-GKRVSSSNVNWSAVG 484 Query: 293 PP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 RQ PG NA+ KI F + + YMHDTP LF R + GC+R+++ Sbjct: 485 AGSRVGVRQRPGSSNALGELKIMFPNSHAIYMHDTPSKSLFERDTRAFSHGCIRLQDPRA 544 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 + +L T I + + PV + +PVH Y +AW + + + DIYG Sbjct: 545 MAAKVLGTTV----EDIGSYIAGGQHKPVDVPENIPVHVAYFTAWPNETGAVSYYADIYG 600 Query: 412 LDNVHVGIIPLP 423 D I Sbjct: 601 RDGYLRKAIDAT 612 >gi|153009554|ref|YP_001370769.1| peptidoglycan-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561442|gb|ABS14940.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi ATCC 49188] Length = 668 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 99/408 (24%), Positives = 172/408 (42%), Gaps = 21/408 (5%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L + E + A L + + + + D S E A Sbjct: 252 LRYAIDAGEGRVIADRLSGFHDLPRNRVDPKAVLEKLASESDPAAYLHGFQPSNEQYAAL 311 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVS---VQRLRERLIISGDLDP------SKG 129 ++ +A + + L + G+++ V L R +G L + Sbjct: 312 KRELANTEPPSAEPIRISL-NGIIKPGDTNDQLSKVVALISRHAPAGYLAQHKQVLDTHA 370 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLE 188 +D + SA+K +Q G P G++ +TL A+ ++ ++ ++ R++ L Sbjct: 371 SGDVYDPELVSAIKDYQKLSGSTPDGVIGRNTLSALQGEQSSIKRDRILYSMERLRWLP- 429 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 G RYV+VN PA E E+GK L V++G QT ++++ ++FNP W +PR Sbjct: 430 HDFGTRYVMVNQPAYRAEYFEDGKEKLAMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPR 489 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKIN 306 SII +M+ + +D YL N + GK+V V+W++ RQ P N Sbjct: 490 SIILNEMLPKVMRDTSYLDRNGYEVYAG-GKKVSASAVNWSAVAAGKAHVGIRQKPSLDN 548 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ KI F + ++ YMHDTP F+ +R + GC+R+ D+ +L + T Sbjct: 549 ALGELKILFPNAHDIYMHDTPAKSYFSRDMRALSHGCIRLERPRDMAAAVLGTSVTDLEK 608 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV Y +AW D I + D+Y D+ Sbjct: 609 YF-----GKNERGIKVKEPVPVFISYFTAWPEADGKIHYYGDVYDRDS 651 >gi|222086217|ref|YP_002544749.1| hypothetical protein Arad_2690 [Agrobacterium radiobacter K84] gi|221723665|gb|ACM26821.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 633 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 97/385 (25%), Positives = 166/385 (43%), Gaps = 23/385 (5%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVS 110 ++S P S + + + +A + S G + L G SS Sbjct: 253 RASPDAAAYLNSRSP--SNQQFTELKAELAKLKGANSTNG-SNISISLTGILKPGGSSPE 309 Query: 111 ----VQRLRERLIISGDLDPSKGL-----SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 V+ ++ R + L + + + + V+ FQ GL G++ S+ Sbjct: 310 MTNIVKAIQHRGSDVLKTAHAATLASYQGTPDYTPDLVALVEDFQKEKGLTSDGVIGQSS 369 Query: 162 LEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + AM D +I++L + + +++ L + +G RYVL+N PA + N + L V+ Sbjct: 370 VRAMVGENSDAKIQKLVIAMEQLRWLPNE-LGSRYVLINQPAFMVYYHNNNQEQLSMRVV 428 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG QT +I + FNP+W +P+SII +M+ LR DP YL + G+ Sbjct: 429 VGGKQHQTFFFEDQIQTVEFNPFWGVPQSIIINEMLPKLRADPNYLDRMGYQVEVG-GRA 487 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 V VDW + RQ P NA+ KI F + + YMHDTP+ F +R + Sbjct: 488 VASSSVDWYGST-KSVAVRQPPSSDNALGELKILFPNSHAIYMHDTPQKSFFKKDMRALS 546 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 GCVR+ + + +L T I + + + V + +VP++ Y +AW KD Sbjct: 547 HGCVRLADPRAMAAAVLNTTVAD----IAKQIAGGQNKAVAVPQKVPIYIAYFTAWPNKD 602 Query: 401 SIIQFRDDIYGLDNVHVGIIPLPED 425 ++Q+ +D+Y D + Sbjct: 603 GVVQYFNDVYDRDAATQKALDATTK 627 >gi|110637821|ref|YP_678028.1| hypothetical protein CHU_1417 [Cytophaga hutchinsonii ATCC 33406] gi|110280502|gb|ABG58688.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 568 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 109/414 (26%), Positives = 197/414 (47%), Gaps = 14/414 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINES----YHSIVNDRFDNFLARVDMGIDSDIPI-ISK 72 L+L + ++ LD + + D+ L IP+ Sbjct: 156 LMLTASMYKYTNHLYFGKLDPVAIYPEWNYQRPSKDLITDSLLVIYFNKNIDQIPVRFRP 215 Query: 73 ET--IAQTEKAIAFYQDILSRG-GWPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPS 127 + A + A+ + + G E+P + L G++S + +++RL + + + Sbjct: 216 QIAFYASLQTALINADSLEANGFTSKEIPYIGKKLVKGDTSFVILEVKKRLQATTEYSFN 275 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 L+ FD + +VK+FQ GL +G++D +TL +N ++ N+ R + Sbjct: 276 -ELNNVFDEQLFQSVKIFQEHVGLHGTGVIDKTTLAKLNYTPAQIRNTIRANMERCRWFS 334 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + Y+LVNIP +L +NGKV TVIVG+ QTP+ + I+ + FNPYW +P Sbjct: 335 NE-LPNEYILVNIPDYTLSHFKNGKVIYNETVIVGKQLNQTPVFQATISNVEFNPYWTVP 393 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 RSI K+++ L++DPQYL+ +N+ +++ + S F ++ PG N+ Sbjct: 394 RSIAVKEILPSLKKDPQYLEKHNMFLMEGDKEIASPPSFAGYSDSYFPFTIKEKPGPKNS 453 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F + + YMHDTP LF+N VR + GC+R+ N + LL + Sbjct: 454 LGQVKFSFPNPYSIYMHDTPAKYLFDNDVRSYSHGCIRLHNPLKFADHLLSQQ-GVTEKR 512 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPK-DSIIQFRDDIYGLDNVHVGII 420 I+E+V++ K + L T++P+ Y + ++ K D+ + F D+Y D + + Sbjct: 513 IDEIVQSEKNYVMALETKMPIMISYFTCYTKKGDNRLYFFYDVYDSDKKIIEGL 566 >gi|329890356|ref|ZP_08268699.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328845657|gb|EGF95221.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 518 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 101/426 (23%), Positives = 170/426 (39%), Gaps = 39/426 (9%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQ 77 L L E + ++E + E + V+ A + + Sbjct: 114 LAYAKVLSEGRVRPETVEE-LWEMQKNSVDLPRGLVDAVAANKLSQWFDALPPTDLGYTN 172 Query: 78 TEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL----SV 132 A Y+ I +GGWP + G S + L RL GDL + ++ Sbjct: 173 LSAGYARYRRIARQGGWPAFRIGGTIEPGTSDPRIPALVARLAAEGDLSAAAAERLKGNL 232 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 A+ +E AV+ FQ RHGL G + +T ++ + R RQ+ +NL R + L ++ + Sbjct: 233 AYGPELEQAVRSFQTRHGLGSDGRIGGATQRSLTATAEDRARQIALNLERRRWL-KRDLN 291 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 + VN AA + ++GK + V+VG QTP L ++ NP W +P I + Sbjct: 292 PERIEVNTAAAIMVYWKDGKPVHSNRVVVGTAANQTPSLEKPFASVVANPPWTVPMGIAR 351 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++++ P YL N++++ + Q G +++ + K Sbjct: 352 REILPKG---PGYLAANDMYV-------------------NADGWVVQRAGPKSSLGNVK 389 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 E ++HDTP FN VR + GCVRV++ I LL P + Sbjct: 390 FELQDSYAIFLHDTPARGAFNLSVRQRSHGCVRVQDAIGFARLLLSPDP-ERLALFDAAQ 448 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII----PLPE---D 425 + +T V + V +Y +A+ + FR+D+Y D + LP+ D Sbjct: 449 ASGETKRVTTGRNIGVRLLYWTAFVDGQGRVAFREDVYKRDAKLADALGIAVNLPQVIAD 508 Query: 426 HPIDSD 431 PID D Sbjct: 509 APIDPD 514 >gi|254500817|ref|ZP_05112968.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222436888|gb|EEE43567.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 658 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 96/420 (22%), Positives = 171/420 (40%), Gaps = 21/420 (5%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQ 77 L L I + + + ++ V+ + + + ++ + Sbjct: 236 LTYVLDATRGRIDPNRISQY-HDLPRHDVDLVGALEEFTASDNVATALEAHQPQSDHFKK 294 Query: 78 TEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVS----VQRLRERLIISGDLDPSKGL-- 130 +A + + L G SS V + + + D L Sbjct: 295 LSAELARLKAEDEESDQIVIAPGTFLKAGKSSPEMKNIVAAISKHGSETLKTDHEATLAA 354 Query: 131 ---SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKL 186 S + + + VK FQ L G+V +T++AM +I ++++ + R + L Sbjct: 355 YDGSDLYTPELVALVKGFQKEAKLTADGIVGKNTIKAMVGETNAAKIAKVELAMERSRWL 414 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 E+ +G R V +N PA + + G + V+VG+ QT + +I + +NPYW + Sbjct: 415 PEE-LGERKVFINQPAFTATYHQPGTDPMSMRVVVGKKSNQTNFFYDKIEIVEYNPYWGV 473 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPGK 304 P SII +M+ L +P YL + G++V VDW + RQ PG+ Sbjct: 474 PYSIIVNEMIPKLAANPSYLDQAGYEVTTPGGRKVSSASVDWYAVANKKKSINVRQYPGR 533 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ KI F +R++ YMHDTP LFN R + GC+R+ + + +L S Sbjct: 534 SNALGEVKILFPNRHHIYMHDTPSKSLFNKDTRAFSHGCIRLHDPKGMAAAVL----GKS 589 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 ++ + + K+ ++PV+ Y +AW D I F D+Y D + + E Sbjct: 590 TDYVSSRIAAGQNAQEKVTGDIPVYVSYFTAWPEADGSIGFYTDVYDRDRYLLKALEKTE 649 >gi|75675184|ref|YP_317605.1| hypothetical protein Nwi_0991 [Nitrobacter winogradskyi Nb-255] gi|74420054|gb|ABA04253.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 811 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 99/429 (23%), Positives = 170/429 (39%), Gaps = 41/429 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLA--RVDMGIDSDIPIISKETI 75 ++ +H + + I H N +DS P + Sbjct: 343 MMDYARQAQSGRMHWTQVSADIQYPEHPVDPEQVLTNVTTAKDSSAALDSYNPPH--KLF 400 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP---LHLGN--SSVSVQRLRERLIISGDLDPSKGL 130 ++ +A + S G E+ P V ++R RL ++ Sbjct: 401 QALKRKLAELRK-DSEGPVIEIAEGPGLVFRKNAVIEDPRVPQIRARLGVT-----QNPD 454 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKKLLEQ 189 FDA V +AV+ FQ RH L P G++ ++T+ A+N P I + N+ R + L + Sbjct: 455 DTRFDADVAAAVREFQARHHLKPDGILGNNTIRALNGPKKDHTIDTIIANMERWRWLPRE 514 Query: 190 ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMFNPYW 244 +G Y ++NIP SL+ +++G + V+VG+ TP+L + I NP W Sbjct: 515 LGAPSLGDAYAILNIPDYSLKVMQHGAPIWSTRVVVGKPGLHATPLLTETMKYITVNPTW 574 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P SII K+ + L+QDP L + + Q PG+ Sbjct: 575 NVPPSIIYKEYLPALQQDPTVLSRMGLKL---------------ERDRNGGIHISQPPGE 619 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK---DTP 361 NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 620 RNALGRIRFNFPNKFLVYQHDTPDKHLFAKEKRAFSHGCMRVQNPDQYAATLLNIVLPQE 679 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 ++ + + R + T PVH Y +A+ + +Q R D+YG D + ++ Sbjct: 680 HYTPEKVRS-MYGRNEFNINFPTPFPVHITYQTAFVDQAGKLQLRGDVYGRDAKMLTLLR 738 Query: 422 LPEDHPIDS 430 +++ Sbjct: 739 NSNGRDLET 747 >gi|294140768|ref|YP_003556746.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella violacea DSS12] gi|293327237|dbj|BAJ01968.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella violacea DSS12] Length = 482 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 113/421 (26%), Positives = 185/421 (43%), Gaps = 26/421 (6%) Query: 2 VGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDM 61 + +KI LY + +L S+ D+ + ++ + Sbjct: 78 INEIKITDSLYSHALLDLLAHIRSVKGG----GEADDEVRLLEAINNDE--------LAE 125 Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIIS 121 I S +P + +++ + I Y+ L WP + LG SS VQRLR L Sbjct: 126 FIASILPSY--DEVSKIRRMIRVYKSQLDVN-WPTITQVNFKLGQSSKQVQRLRWMLTAL 182 Query: 122 GDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 GDL+ S+ +D V +K FQ RHG+ SG +D ST +N+ R+ Q+Q Sbjct: 183 GDLENSELTRYRESIYDPMVIHGIKAFQRRHGIRVSGELDESTALVLNISPQRRVIQMQQ 242 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 NL R ++ +Y+ +NIP SL+ G++ L VIVG+ TP++ +R+ R+ Sbjct: 243 NLWRW-LMMPPSPPKKYIKINIPDYSLQLFVLGELDLSMKVIVGKPSSPTPVMMTRVTRM 301 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEP-- 293 NPYW P SII+ +++ L +P YL + E+ V ++ + Sbjct: 302 TINPYWTPPSSIIRSELLPLNSTEPGYLNHKGFELHAVGKNEISVVKLTNMEPKQLKGLL 361 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + Q PGK NA+ + + + Y+HDTP LF+ + GC+R+ + L Sbjct: 362 TEYRLVQAPGKDNALGQVRFTIPNTQSIYLHDTPAKNLFDGEHLALSHGCIRLEKALALS 421 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +L+ + I+ + KT V L +P+ Y +AW +Q R DIY LD Sbjct: 422 EYLI--SIHEDSKEIQVALSGSKTRYVSLPDPMPIFITYQTAWVDNRGKLQLRPDIYHLD 479 Query: 414 N 414 Sbjct: 480 R 480 >gi|330445897|ref|ZP_08309549.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490088|dbj|GAA04046.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 586 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 172/352 (48%), Gaps = 20/352 (5%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD-- 135 T A+A YQ++ + R G++ L + L GD+D + +D Sbjct: 221 TMDAVAKYQNLPAHTLKASDFTRVYRKGDTLPHGHELVKVLYTLGDMDQA-----HYDHL 275 Query: 136 ---------AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 V ++K FQ RHGL G+V +T++ + +P + R+L +N +R+ L Sbjct: 276 SHQAKITNTGAVFESLKTFQKRHGLSSDGIVGPATVQQLVMPYNEIARRLALNTLRVATL 335 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++ VNIP LE + G V S VIVGR R T + S I ++ NPYW + Sbjct: 336 NKHSEDRPHIWVNIPNYKLEVYDKGNVVFESKVIVGRDSRPTNLFSSAITTMVVNPYWNV 395 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPPNFI--FRQDP 302 P +I Q D++ ++++ YLK +N+ +++ + ++W++ P F F+Q P Sbjct: 396 PITIKQHDVIPKVKRNIGYLKQHNMQILNSWRDRTVINPTSINWSTVNPKTFPHEFQQGP 455 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K + ++HDTP LF+ R +SGCVRV DL +++ Sbjct: 456 GPHNSLGRVKFLMPNDYAIFLHDTPARGLFSKTKRDLSSGCVRVERAYDLANYVIDYQNR 515 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +++ K V L+ + V FVY++AW ++ +Q R+DIYG D+ Sbjct: 516 GNIPAFTKMLNAEKQKTVSLSKRIDVDFVYLTAWVDQNGKVQMREDIYGYDS 567 >gi|330445733|ref|ZP_08309385.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489924|dbj|GAA03882.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 579 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 116/415 (27%), Positives = 181/415 (43%), Gaps = 21/415 (5%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIV--NDRFDNFLARVDMGIDSDIPIISK 72 F Y+ G+ I ++ R+ I P Sbjct: 157 FAYMGFIEGIQQKGNLWLFGETPPTIFPLPSDTFIEELLHNHEQQRLRYFISRLKP--HD 214 Query: 73 ETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPS---- 127 + + A+ +I WP L + G ++ + L GD+ PS Sbjct: 215 DEYIELVAALDELNEIKDMR-WPVFLFKGIIRPGQYVNNMDGVVTVLETLGDMTPSEARK 273 Query: 128 --KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 V A+K FQ RHGL G++ T + + + + RIR L +N R++ Sbjct: 274 IRTQKRKRLSGSVVIAIKRFQERHGLKSDGVIGPQTQQWLALSLKQRIRLLALNAQRLRL 333 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 V+VNIP+ + NG+ L S VIVGR RQTP++ S I ++FNPYW Sbjct: 334 WSVTPK--TGVVVNIPSYYMNLWLNGEKVLGSKVIVGRPSRQTPMMGSDIQSVVFNPYWN 391 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWN--SPEPPNFIFRQD 301 +P SI++KD+M +R++ YL NN +I G +++ + + ++ SP + RQ Sbjct: 392 VPNSIMKKDIMPKVRRNRSYLSRNNYEVIKGWGSAQKISINSIPYHLLSPNRFPYRLRQK 451 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PGK NA+ K F + Y+HDT LFN R +SGC+RV L LL+ + Sbjct: 452 PGKRNALGLFKFNFPNSQAIYLHDTSSRSLFNKHERALSSGCIRVEQAKSLAKVLLEYS- 510 Query: 362 TWSRYHIEEVVKTRKTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 S + ++RKT + L VPV +Y +AW + ++ +R DIY D Sbjct: 511 GSSEQRFNNLSRSRKTRTIVLGDGKSVPVDLIYQTAWVDELGLVNYRSDIYKYDR 565 >gi|90579549|ref|ZP_01235358.1| hypothetical protein VAS14_01266 [Vibrio angustum S14] gi|90439123|gb|EAS64305.1| hypothetical protein VAS14_01266 [Vibrio angustum S14] Length = 579 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 110/415 (26%), Positives = 187/415 (45%), Gaps = 21/415 (5%) Query: 15 FVYLILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRF-DNFLARVDMGIDSDIPIISK 72 F Y+ L G+ + I+ + + R+ I P+ Sbjct: 157 FAYMGLIEGIQKKGNLWLFGDIPPTILPLPSDGFLEKLLRSHEQQRLRYFIARLKPL--D 214 Query: 73 ETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + A+ +++ WP L + G +++ + L GD+ + + Sbjct: 215 TEYTELVTALYKL-NLIKDTRWPVFLFKGNIQPGQYVKNIEGVVTVLETLGDMTALEAEN 273 Query: 132 VA------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 V A+K FQ RHGL G++ T + + + + RIR L +N R++ Sbjct: 274 ARSQKIQNLSGSVLIAIKRFQERHGLKSDGVIGPQTQQWLALNIKERIRLLALNAQRMRL 333 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 ++VNIP+ + G+ L S VIVGR RQTP+++S I ++FNPYW Sbjct: 334 WSV--KPDTGIVVNIPSYYMNLWLEGEKVLGSKVIVGRPSRQTPMIYSDIQSVVFNPYWN 391 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWN--SPEPPNFIFRQD 301 +P SI++KD+M +R++ YL ++N +I G+++ + + ++ SP + RQ Sbjct: 392 VPNSIMKKDIMPKVRRNRNYLANHNYEVIKGWDNGQKIAINSIPYHLLSPNRFPYRLRQK 451 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PGK NA+ K F + Y+HDT LF R +SGC+RV L LL+ + Sbjct: 452 PGKRNALGLYKFNFPNNQAIYLHDTASRSLFKKHERALSSGCIRVEQAKSLAKVLLEYS- 510 Query: 362 TWSRYHIEEVVKTRKTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 S + + ++RKT + L + VPV +Y +AW ++ +R DIY D Sbjct: 511 GSSVQRFDNLSRSRKTRTIVLGDSKSVPVDLIYQTAWVDDLGLVHYRSDIYEYDR 565 >gi|197334392|ref|YP_002155958.1| cell wall degradation protein [Vibrio fischeri MJ11] gi|197315882|gb|ACH65329.1| cell wall degradation protein [Vibrio fischeri MJ11] Length = 512 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 180/367 (49%), Gaps = 16/367 (4%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 + + P S + + + ++ Y + R + V + R Sbjct: 146 DLVSFTHALRP--SSDQYEELYRRLSHYYQPYEDSESVFIKERLIRPNQF-TDVNAIIYR 202 Query: 118 LIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L +SG+++ + + +D+ + +K FQ RHGL G++ TL +N+ Sbjct: 203 LQVSGEINHQEAEMLLRQSNGHYDSSLVLIIKEFQKRHGLKQDGIIGPKTLHWLNMTAKE 262 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R+R + +N+ R++ + +VLVNIP+ + + G++ S VIVG+ +R+TPI Sbjct: 263 RVRIMALNIQRLRLW--ENKNSHFVLVNIPSYEMAYWQEGELVFTSKVIVGKPERRTPIF 320 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWN 289 +R+N I+FNP W +P I+++D++ + +L+ N +I + + ++++DW Sbjct: 321 TTRLNAIVFNPEWKVPTKIMREDILPKALSNKDFLQSQNFEIIPTWLSKEVISIDDIDWE 380 Query: 290 SPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + +Q G NA+ K +RN Y+HDTP LF+ R +SGC+RV Sbjct: 381 QVNVETFPYKLKQKSGNTNALGRYKFNTPNRNAIYLHDTPSRSLFSKQHRAYSSGCIRVE 440 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + L+K++ +S ++ + +T+ V L ++ V+ +Y ++W +D+ +QFR+ Sbjct: 441 KASEFAQLLMKES-HFSTQDYKDYHELPETSKVTLDQKISVYTIYQTSWVGEDNQVQFRN 499 Query: 408 DIYGLDN 414 DIY D Sbjct: 500 DIYKYDE 506 >gi|218678646|ref|ZP_03526543.1| hypothetical protein RetlC8_07084 [Rhizobium etli CIAT 894] Length = 396 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 100/371 (26%), Positives = 160/371 (43%), Gaps = 24/371 (6%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRL 114 I S P + + +A + G + + L G SS + + Sbjct: 19 DAGAYIASRSPDGPQ--FEALKAELAKLRA-ADGGNEERIVVSLDKLLKPGESSPEIANI 75 Query: 115 RERLIISGDLD---------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + G + S + + S V+ FQ GL G++ +T+ AM Sbjct: 76 VKAIGKHGSETLKTDHAATLAAYTGSADYSPEIVSLVEDFQKERGLKADGVIGQATVRAM 135 Query: 166 NV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +I +L V + + + L + +G RYV++N PA +GK L V+VG Sbjct: 136 TGGDSNASKIDKLDVAMEQARWLP-EDLGSRYVMINQPAFMAYYHNDGKEQLSMRVVVGG 194 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + QT I + FNP+W +P+SII +M+ LR DP YL + + G V Sbjct: 195 KNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNGHAVAS 253 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 VDW N RQ P NA+ KI F + + YMHDTP F +R + GC Sbjct: 254 SSVDWYGST-DNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGC 312 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 VR+ N + +L T + + + T + VK+ ++PV+ Y +AW KD ++ Sbjct: 313 VRLSNPRAMAAAVLGTTVDD----VAKQIATGQNHAVKVPQKIPVYVSYFTAWPNKDGVV 368 Query: 404 QFRDDIYGLDN 414 ++ DD+YG D Sbjct: 369 EYFDDVYGRDA 379 >gi|110633909|ref|YP_674117.1| hypothetical protein Meso_1556 [Mesorhizobium sp. BNC1] gi|110284893|gb|ABG62952.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 661 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 93/419 (22%), Positives = 162/419 (38%), Gaps = 23/419 (5%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-ETIAQT 78 L + + L + + LA + + E Sbjct: 214 LRYARDARLGRLDPNKLSGYHDFKRKPLDEKLVLEILASSAEPATYLQSLHPQNELFNAL 273 Query: 79 EKAIAFYQDILSRGGWPEL--PIRPLHLGNSSVSVQRLRERLIIS-----------GDLD 125 + + + + P + G S ++ L I G + Sbjct: 274 RDELKKLRTEAEQEKEEIVIAPDILVRPGASHPDFSKV--LLAIESKADDDFRAEHGAVL 331 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIK 184 + S + + +K Q +H L P G+V T+ A+ RI ++ +++ R++ Sbjct: 332 TAHLGSQTYAEELIPIIKAVQRQHKLSPDGIVGQRTVRALTGESASSRIEKVLLSMERLR 391 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +G V++N+P+ + ENG L +VG+ QT H I + FNPYW Sbjct: 392 WQPSY-LGSARVMINVPSFTASYFENGTEKLSMRAVVGQSSSQTYFFHDEIEYVEFNPYW 450 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP-NFIFRQDPG 303 +PRSII +M+ LR+DP YL + D +G+ V ++W + RQ PG Sbjct: 451 GVPRSIIVNEMLPKLRRDPGYLDRAGYEVFDSRGRRVASSAINWAVYGANVPYGVRQPPG 510 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ KI F + ++ YMHDTP+ LF R + GCVR+ + + +L Sbjct: 511 ASNALGRLKIMFPNSHDIYMHDTPQKSLFARDSRAFSHGCVRLEDPGAMAAAVL----GI 566 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 S + + + + +++PV+ Y +AW I + DIY D + Sbjct: 567 SSEEVAAEINKGRNMRRNVPSKIPVYVGYFTAWPETSGSISYHADIYERDAHLKKALSR 625 >gi|192359326|ref|YP_001983485.1| cell wall degradation protein [Cellvibrio japonicus Ueda107] gi|190685491|gb|ACE83169.1| cell wall degradation protein [Cellvibrio japonicus Ueda107] Length = 746 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 100/293 (34%), Positives = 149/293 (50%), Gaps = 4/293 (1%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 FD Y+ AVK FQ L+ G + +T A+NV R+ Q++VNL R + LL Sbjct: 455 DEVFDEYLVEAVKTFQREQYLEVDGAIGPATRAALNVSAKTRLEQIRVNLDRARWLL-HS 513 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + VLV+I + + + RS V VG R +P+ S +N I NP W +P +I Sbjct: 514 IPPEMVLVDIAGFKVTYFKASQPIWRSRVQVGMAYRTSPLFRSEVNYITLNPTWTVPPTI 573 Query: 251 IQKDMMALLRQ-DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 ++KD++ LR+ D YL+DN I +++ +G+E+ +DW P RQD G A+ Sbjct: 574 LRKDILPKLRKGDLSYLRDNRIRVLNRQGQELDPASIDWQ--RPGAITLRQDAGPKAALG 631 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 I F + + Y+HDTP LF R +SGC+RV ++L LL DTP W IE Sbjct: 632 KAVIRFPNSHAVYLHDTPHQRLFEKSQRAFSSGCIRVERALELVQLLLSDTPGWDAAAIE 691 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + T T V LA VP+ Y +A + + F+ DIY D V + + Sbjct: 692 KALATGNTRNVILARRVPILLAYWTADVIDEHKVVFKPDIYARDPVLLAALNR 744 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + + Y+ ++ GGWP L P L + LR RL +SG+ P Sbjct: 310 YSGLRAGLLRYRQLVDDGGWPALESGPTLKPCMIDPLIAVLRRRLAVSGEYQPPVADQRP 369 Query: 134 FDAYVESA 141 + ++SA Sbjct: 370 ASSSLDSA 377 >gi|163751738|ref|ZP_02158956.1| hypothetical protein KT99_12214 [Shewanella benthica KT99] gi|161328390|gb|EDP99549.1| hypothetical protein KT99_12214 [Shewanella benthica KT99] Length = 453 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 108/366 (29%), Positives = 170/366 (46%), Gaps = 14/366 (3%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRE 116 A + I S +P + + + I Y+ L WP + LG SS VQRLR Sbjct: 92 AELSAYIASILPSY--NEVLRIRRMIRVYKTQLDM-DWPSVTRVNFKLGQSSQQVQRLRW 148 Query: 117 RLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 L + GDL+ S+ +D V +K FQ RHGL +G +D+ T++A+N+ R+ Sbjct: 149 MLTVLGDLENSELTRYREAIYDPMVIQGIKSFQRRHGLTANGELDAPTVQALNISPKRRV 208 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 Q+Q NL R +L +Y+ +NIP SLE G++ L VIVG+ TP+L + Sbjct: 209 IQMQQNLWRW-IMLPSSPPPKYIKINIPNYSLELFVLGELDLSMKVIVGKPSSPTPVLLT 267 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH---MIDEKGKEVFVEEVDWNS 290 R+ R+ NPYW P SII+ +++ L ++P YL + + V + + Sbjct: 268 RVTRMTINPYWTPPTSIIRSELLPLNSREPGYLNHKGFELHPVAKKDNPVVKLINIAPRQ 327 Query: 291 PEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + Q PGK NA+ + + + Y+HDTP+ LF + GC+R+ Sbjct: 328 LAELLKEYRLVQAPGKDNALGKLRFTIPNTESIYLHDTPQKKLFAGNDLALSHGCIRLEK 387 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + L ++L + I + T V L+ +P+ Y +AW +Q R D Sbjct: 388 AVALFEYILSTQ--DNAEEIRRALGQPNTRYVSLSNAIPIFITYQTAWVDSRGKLQLRPD 445 Query: 409 IYGLDN 414 IY LD Sbjct: 446 IYHLDR 451 >gi|241204955|ref|YP_002976051.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858845|gb|ACS56512.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 637 Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 102/413 (24%), Positives = 173/413 (41%), Gaps = 27/413 (6%) Query: 19 ILPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L V I + + + + + + V I S P S+ Sbjct: 218 VLAFVQDTVRGRIDPNKISGYHDFQRKVVNLAPVLKLARLSPDVGAYIASRSPDSSQ--F 275 Query: 76 AQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + +A + G + R L G+SS + + + + G + Sbjct: 276 QALKAELAKLRA-ADGGNEERIVVSLDRLLRPGDSSPEIANIVKAIGKHGSETLRTDHAA 334 Query: 133 A---------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLM 181 + + S V+ FQ GL G++ +T+ AM +I +L V + Sbjct: 335 TLAAYAGSIDYSPDIVSLVEEFQKERGLKADGVIGQATVRAMTGGDTNASKIDKLIVAME 394 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + + L + +G RYV++N PA + +GK L V+VG + QT I + FN Sbjct: 395 QARWLP-EDLGSRYVMINQPAYMVYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFN 453 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P+W +P+SII +M+ LR DP YL + + G V VDW N RQ Sbjct: 454 PFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNGHAVASSSVDWYGSTN-NVSVRQP 511 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 P NA+ KI F + + YMHDTP F +R + GCVR+ + + +L T Sbjct: 512 PSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLADPRAMAAAVLGTTV 571 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + + + + V++ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 572 DD----VAKQIASGQNHAVRVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDA 620 >gi|116252447|ref|YP_768285.1| hypothetical protein RL2700 [Rhizobium leguminosarum bv. viciae 3841] gi|115257095|emb|CAK08189.1| conserved hypothetical exported protein [Rhizobium leguminosarum bv. viciae 3841] Length = 637 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 103/424 (24%), Positives = 174/424 (41%), Gaps = 27/424 (6%) Query: 19 ILPMGLSLVEKPIHASVLD---EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L V I + + + + + + V I S P + Sbjct: 218 VLAFVQDTVRGRIDPNKISGYHDFQRKVVNLAPVLKLSRMSPDVGAYIASRSPDSPQ--F 275 Query: 76 AQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + +A + G + R L G+SS + + + + G + + Sbjct: 276 QALKAELAKLRA-ADGGNEERIVVSLDRLLRPGDSSPEIANIVKAIGKHGSETLNTDHAA 334 Query: 133 A---------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLM 181 + + S V+ FQ GL P G++ +T+ AM +I +L V + Sbjct: 335 TLAAYAGSIDYSPDIVSLVEDFQKERGLKPDGVIGQATVRAMTGGDTNASKIDKLVVAME 394 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + + L + +G RYV++N PA + +GK L V+VG + QT I + FN Sbjct: 395 QARWLP-EDLGSRYVMINQPAYMVYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFN 453 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P+W +P+SII +M+ LR DP YL + + G V VDW N RQ Sbjct: 454 PFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNGHAVASSSVDWYGSTN-NVSVRQP 511 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 P NA+ KI F + + YMHDTP F +R + GCVR+ + + +L T Sbjct: 512 PSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLADPRAMAAAVLGTTV 571 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 I + + + + V++ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 572 DD----IAKQIASGQNHAVRVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDGYVDKAFD 627 Query: 422 LPED 425 Sbjct: 628 ATSK 631 >gi|262275620|ref|ZP_06053429.1| hypothetical protein VHA_002601 [Grimontia hollisae CIP 101886] gi|262219428|gb|EEY70744.1| hypothetical protein VHA_002601 [Grimontia hollisae CIP 101886] Length = 505 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 178/368 (48%), Gaps = 18/368 (4%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRE 116 ++ + P S+ + AI QD W E L LG+ L Sbjct: 130 QLYDFVYDLRPDTSQ--YRKMASAIVALQD-NKSAHWAEFTQGGLVRLGDRLEDPGSLIT 186 Query: 117 RLIISGDLDPSKGLS------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 L G L ++A + AVK FQ HGL G++ ++T MN+ Sbjct: 187 NLERQGALSAYDAQRLKRDQVNHYNATLVEAVKRFQENHGLKKDGVIGNNTRRWMNMSPS 246 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 RI+ L +N+ R++ ++ + +LVNIP +E + K+ L S V+VGR R+TP+ Sbjct: 247 SRIQILALNMERLRLWPTER--EKIILVNIPNYEMEFWLDRKLILDSKVVVGRPSRRTPL 304 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDW 288 SR++ ++FNP W +P I+++D++ ++QD +YL ++ ++ G + EE+DW Sbjct: 305 FESRLDSVVFNPSWNVPVKIMREDILPKVQQDNEYLNKHSYTVLSSWVNGSVISAEEIDW 364 Query: 289 NSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + P +F +R Q PG NA+ K + N Y+HDTP LFN R +SGC+RV Sbjct: 365 ETVSPNSFPYRLQQSPGSFNALGRYKFNTPNGNAIYLHDTPAKELFNKSRRAYSSGCIRV 424 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + L LL + E + +T V L ++ VH +Y +AW ++ +QFR Sbjct: 425 QKAEILAEILL-NKSGKRLGDYEYYQRIPETKWVSLRQKISVHTIYQTAWV-EEGKVQFR 482 Query: 407 DDIYGLDN 414 +D+Y D Sbjct: 483 EDVYRYDA 490 >gi|315179999|gb|ADT86913.1| conserved hypothetical protein [Vibrio furnissii NCTC 11218] Length = 517 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 169/382 (44%), Gaps = 12/382 (3%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSRGGWPELP 98 + R +A GI I + + Q A + I + + Sbjct: 136 HPLPLPSEQARLALHIAVGIHGITDLIDEYTPQDAAYRQLVSAYRYLSQIEPQMLSVYVQ 195 Query: 99 IRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R G+ + L +RL + D+ +D + VK FQ HGL G++ Sbjct: 196 ARLKRPGDKLEDRRTLIQRLSLVNIDVAGISDNVTWYDNSLVEPVKQFQKMHGLKIDGII 255 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 TL+ +N+ V R+ L +N R++ Q ++VN+P +L+ +GK S Sbjct: 256 GPDTLKWLNMKVPERLALLALNAERMRLWSTQD--DTVIVVNVPGYNLKYWYSGKPVFES 313 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VGRV R TP++ ++++ ++ NP W +P I+ +D++ + ++D YL ++I +I+ Sbjct: 314 KVVVGRVTRPTPVMSTKLDSLILNPTWKVPHKIMVEDILPMTKRDASYLSRHHIDIIESW 373 Query: 278 --GKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + +DW + P + RQ G NA+ K ++ Y+HDTP LFN Sbjct: 374 KSDQTLDPALIDWQNVNPKTFPYRMRQQAGNQNALGLYKFNTPNKRAIYLHDTPSKHLFN 433 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 + R +SGC+RV + LL+ I + L +PVH +Y Sbjct: 434 HPTRAFSSGCIRVEHADQFATALLETQGINHSELIPNADDA--NRAIPLKKRIPVHIIYQ 491 Query: 394 SAWSPKDSIIQFRDDIYGLDNV 415 + W + + +RDDIY LD + Sbjct: 492 TVWY-EGGEVHYRDDIYRLDRI 512 >gi|327478928|gb|AEA82238.1| putative periplasmic protein [Pseudomonas stutzeri DSM 4166] Length = 526 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 111/393 (28%), Positives = 189/393 (48%), Gaps = 21/393 (5%) Query: 30 PIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDI 88 + L + E + D+ + + + + A+ A+ Y+D+ Sbjct: 131 HLARGRLRQADIEPIWRSPDAPEADDRQRLLQIAVQGLADLPGAFDRARPPHAL--YRDL 188 Query: 89 LSR---------GGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + W LP P L G LRE L+++G L + +D + Sbjct: 189 RAAYARQRQAALPAWRPLPSGPTLRPGMRDERSPLLRE-LLLAGAGSAPA-LDLRYDDEL 246 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 AV+ FQ++HGL+ G+V ++TL A+NV R+ QL++NL R++ + + + + +LV Sbjct: 247 VEAVRGFQLQHGLEADGVVGAATLAALNVSPASRLDQLRINLERLRWI-SRDLEPQSLLV 305 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 +I A L + ++ VGR RQTP L SRI+R+ NP W +P +I+++D + L Sbjct: 306 DIAGARLIYFRDSCPFWQTRTQVGREARQTPPLKSRISRLTLNPTWTVPPTILKQDKLPL 365 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 +R+D YL + + +ID +G V VDW P + RQD G N + I F + Sbjct: 366 IREDIAYLARHQMRVIDAQGNAVDPYAVDW--ANPRGILLRQDAGPANPLGQVAIRFANP 423 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP LF R +SGCVRV + + L LL+ R + ++++ +T Sbjct: 424 FSVYLHDTPSKPLFERAARAVSSGCVRVESALQLVDLLLEADE---RDTVARLLQSGETH 480 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 +LA + P+ Y +A + + ++R DIY Sbjct: 481 EYRLARQTPILMAYWTADADDSGLPRYRPDIYK 513 >gi|330722118|gb|EGH00028.1| L2CD-transpeptidase YcbB [gamma proteobacterium IMCC2047] Length = 439 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 176/365 (48%), Gaps = 11/365 (3%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKG 129 SK++ A+ Y++I + G W PL G+ V +L+ L GDL P Sbjct: 57 SKQSFESLADAVLTYENIQNNGRWRTFSAGPLLRQGDRHPQVSQLKAHLQWLGDLPPQDI 116 Query: 130 LS---VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 LS FD + A+ FQ RH + G++ T +NVP RI QL +N+ R + Sbjct: 117 LSLGSRLFDRALHQALLRFQARHSVKADGVLGPKTRALLNVPPWQRIDQLVLNMYRQQ-- 174 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + Y+ +N+P +L + G+V L +VG+ RQTP + + +++ NP W + Sbjct: 175 QNEINDDVYLHINLPEYNLRFYQFGEVLLEMRAVVGKRTRQTPEFSAAVTKLIINPDWNV 234 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPP--NFIFRQD 301 P+SI +D++ L DP++L+ N+ ++ EV +VD++ + F + Sbjct: 235 PKSIAYRDILPKLHNDPEFLRKRNLRVVSGWQLPRVEVPEHQVDFDRMYQGAEYYRFWEP 294 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG+ N + K + S N+ Y+HDT + LF+ R +SGC+R+ + L L++ Sbjct: 295 PGETNTLGRMKFQLDSDNSIYLHDTQQKNLFDAESRAFSSGCIRLESPRALADTLMRVAN 354 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W+ ++ + +++ + VH Y +AW K ++ F +D+Y D+V ++ Sbjct: 355 QWTPEVLDPLFDGPDMIKLRVGKNILVHVTYWTAWLDKRGVLHFANDMYERDSVDFAVMQ 414 Query: 422 LPEDH 426 + Sbjct: 415 ERQRQ 419 >gi|89073969|ref|ZP_01160475.1| hypothetical protein SKA34_15405 [Photobacterium sp. SKA34] gi|89050297|gb|EAR55801.1| hypothetical protein SKA34_15405 [Photobacterium sp. SKA34] Length = 579 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 108/415 (26%), Positives = 182/415 (43%), Gaps = 21/415 (5%) Query: 15 FVYLILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRF-DNFLARVDMGIDSDIPIISK 72 F Y+ + + I+ + + + R+ I P+ Sbjct: 157 FAYMGFIEAIEKKGNLWLFGDIPPTILPLPSDRFIEELLTSHEQQRLRFFIARLKPL--D 214 Query: 73 ETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + A+ +I WP L + G +++ + L GD+ + + Sbjct: 215 NEYTELVTALNKLNEIRDTR-WPVFLFKGIIQPGKYVKNIEGVVTVLETLGDMTTLEAEN 273 Query: 132 ------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 V AVK FQ RHGL G++ + T + + + + RIR L +N R++ Sbjct: 274 VRSQKIQYLSGSVLIAVKRFQERHGLKNDGVIGTQTQQWLALNIKERIRLLALNAQRMRL 333 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 ++VNIP+ + G+ L S VIVGR R TP++ S I ++FNPYW Sbjct: 334 WSV--KPDTGIVVNIPSFYMNLWLEGEKVLGSKVIVGRPSRHTPMIDSDIQSVVFNPYWN 391 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWN--SPEPPNFIFRQD 301 +P SI++KD+M +R++ YL ++N +I +++ + + ++ SP + RQ Sbjct: 392 VPNSIMKKDIMPKVRRNRNYLANHNYEVIKGWDNAQKIAINSIPYHLLSPNRFPYRLRQK 451 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PGK NA+ K F + Y+HDT LF R +SGC+RV L LL+ + Sbjct: 452 PGKRNALGLYKFNFPNNQAIYLHDTASRSLFKKNERALSSGCIRVEQAKSLARVLLEYS- 510 Query: 362 TWSRYHIEEVVKTRKTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 S + + ++RKT + L VPV +Y +AW ++ +R DIY D Sbjct: 511 GSSEQRFDSLSRSRKTRTIVLGDNKSVPVDLIYQTAWVDDSGLVHYRSDIYQYDR 565 >gi|256061060|ref|ZP_05451216.1| cell wall degradation protein [Brucella neotomae 5K33] Length = 670 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 254 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 311 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 312 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 369 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 370 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 429 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 430 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 488 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 489 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 547 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 548 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 607 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 608 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|294852310|ref|ZP_06792983.1| cell wall degradation protein [Brucella sp. NVSL 07-0026] gi|294820899|gb|EFG37898.1| cell wall degradation protein [Brucella sp. NVSL 07-0026] Length = 666 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 250 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 307 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 308 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 365 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 366 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 425 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 426 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 484 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 485 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 543 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 544 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMATAVLGTSVKN 603 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 604 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|261325062|ref|ZP_05964259.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|261301042|gb|EEY04539.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] Length = 666 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 250 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 307 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 308 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 365 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 366 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 425 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 426 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 484 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 485 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 543 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 544 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 603 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 604 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|148558873|ref|YP_001258930.1| cell wall degradation protein [Brucella ovis ATCC 25840] gi|148370130|gb|ABQ60109.1| cell wall degradation protein [Brucella ovis ATCC 25840] Length = 656 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 240 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 297 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 298 ALKRALA--DTEPPRGKPIRISFDGGIKPGDKSEQLSKVVALISRHVPADYLAQHRDVLA 355 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 356 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 415 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT + ++ ++FNP W Sbjct: 416 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYDKVQTVVFNPSWG 474 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 475 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 533 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 534 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 593 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 594 LDKYF-----GKDERDIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 639 >gi|300023955|ref|YP_003756566.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525776|gb|ADJ24245.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 743 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 103/449 (22%), Positives = 178/449 (39%), Gaps = 52/449 (11%) Query: 20 LPMGLSLVEKPIHASVLDEII--NESYHSIVNDRFDNFLAR-VDMGIDSDIPIISKETIA 76 L + + L I+ + A + P + Sbjct: 241 LKYARFARGGRLDPASLSNILDMKPPVKDPKTVMRELADASHPGPFLRGFNPKH--DGFE 298 Query: 77 QTEKAIAFYQDILSRGGWPELPI--------RPLHLGNSSVSVQRLRERLIISGDLDPSK 128 + + + + + P P + L LG V LR+RL + S Sbjct: 299 KLRQELLKARGVTVEEEAPTDPAEEVKLPRGKVLRLGTRDDQVALLRQRLKV---PSESP 355 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-------VPVDLRIRQLQVNLM 181 + +D + AVK +Q +GL P G+V + A+N + + +L VN+ Sbjct: 356 DANDLYDDALLDAVKDYQRANGLTPDGLVGNGVRNALNGGGKSKRIDPARNVDRLIVNME 415 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + L + +G YV+ NIP + E + L +IVG+ TP+L + + ++F Sbjct: 416 RWRWLP-ENLGSFYVMNNIPEYTSEIWRGKERVLNQRMIVGQPSWPTPVLTASMQYVIFR 474 Query: 242 PYWVIPRSIIQKDMMALLRQ--DPQY--------------------LKDNNIHMIDEKGK 279 P W +P I K++ L+Q + Y L+ + + G+ Sbjct: 475 PSWGMPDGIKAKELAPRLKQASNTGYDFFDQLFGGGGGGNSGGARVLQAYKLQV-SFNGR 533 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 V V+WN+ + + F Q PG N + K F ++++ YMHDTPE LF R Sbjct: 534 PVDPNSVNWNTADIRRYSFVQPPGPDNPLGMVKFRFPNKHDVYMHDTPERGLFGQANRAL 593 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 + GC+RV + +L++ +S + E+ V L+ VPV+ VY +A + Sbjct: 594 SHGCLRVGDPRRTAEVILQEDKGYSAEKVGELWNGG--ADVTLSKPVPVYLVYFTARVDE 651 Query: 400 DSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 D ++ DIYG DN + + HP+ Sbjct: 652 DGKLRTYGDIYGNDNRVMSALR---GHPV 677 >gi|254704262|ref|ZP_05166090.1| cell wall degradation protein [Brucella suis bv. 3 str. 686] Length = 670 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 254 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 311 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 312 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRDVLA 369 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 370 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 429 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 430 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 488 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 489 VPRSIILNEMLPKVMRDTSYLDRNGYKVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 547 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 548 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 607 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 608 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|152990487|ref|YP_001356209.1| hypothetical protein NIS_0738 [Nitratiruptor sp. SB155-2] gi|151422348|dbj|BAF69852.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 492 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 173/360 (48%), Gaps = 14/360 (3%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP----LHLGNSSVSVQRLRERLI 119 S I+ + + + Y++I RGGW + + L G V +LR RL+ Sbjct: 128 KSYDHILQNPYLDMLYEILNKYENIKKRGGWGVITLSNDYAYLLPGKKYDEVVQLRWRLM 187 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G L +D ++ AV+ FQ RH L P G+V +TL+ +N V+ I ++ +N Sbjct: 188 QEGYLKDQNMTDTVYDENLKLAVEEFQRRHFLKPDGIVGPTTLKVLNESVESIIEKILIN 247 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + R++ L++ YV VNIP L +G + S VIVGR +R TP++ I+ + Sbjct: 248 IERLRWYLQEDK--SYVFVNIPQFRLFLWHDGDMVFDSKVIVGRKERPTPLMRHEISYAV 305 Query: 240 FNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNI--HMIDEKGKEVFVEEVDWNSPEPPNF 296 NPYW P++II +D++ L+ + L+ I + + + + + W++ + F Sbjct: 306 LNPYWRAPKTIIAQDILPKLKAGKFEELEKEGIIASLDRYANETIPFDLIYWDAIDLSTF 365 Query: 297 IFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 Q PG N + K+ F ++ + Y+HDT LF R +SGCVRV I+L Sbjct: 366 PIVFLQKPGPKNFLGFVKLMFPNKYDVYLHDTNARDLFRYSYRALSSGCVRVEKPIELFH 425 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + T S I + + +T V++ + PV+ +YI+ D I F DIY LD Sbjct: 426 LV---EGTLSYREIFDRLWDHQTKKVRIHPKFPVYLMYITVMKEDDGNIYFYPDIYQLDR 482 >gi|119945331|ref|YP_943011.1| cell wall degradation protein [Psychromonas ingrahamii 37] gi|119863935|gb|ABM03412.1| cell wall degradation protein [Psychromonas ingrahamii 37] Length = 513 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 185/392 (47%), Gaps = 18/392 (4%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVD-MGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 + + ++ F+ ++ + PI ++++ Q + I ++ + Sbjct: 128 RIKNSLKAPSKESIDAFFNTGSPQIRLRYLQRLSPISAQQS--QLYQNILKLKNKPVQ-I 184 Query: 94 WPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKG------LSVAFDAYVESAVKLFQ 146 + + + +G+S + L RL ISG+L + + + ++ FQ Sbjct: 185 FDAVKLTEFAKIGDSLAQKKVLLSRLEISGELSSQEKQQIELENHQGYSQKLGEIIRSFQ 244 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 +RHGL+P G++ +TL +N+ R+R + +N++R + R V++NIP ++E Sbjct: 245 IRHGLEPDGIIGKNTLYWLNISRQERVRLMALNILRQQLWTMDNT--RKVIINIPDYTME 302 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 E + S VIVG+ R+TP+ +++N I+FNP W +P I+++D++ + D YL Sbjct: 303 YWEEDQKIFESKVIVGQTKRKTPLFSAQLNAIVFNPRWNVPTIIMREDILPKVLLDINYL 362 Query: 267 KDNNIHMIDE--KGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 ++ +I+ K + E ++W + + RQ G+ NA+ K + N+ Y Sbjct: 363 SRHSYEIIENYQSQKVIDAETINWKLITVHNFPYRLRQKSGENNALGLYKFNTPNNNSIY 422 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LF R +SGC+RV+ ++L+ D + +T+ V L Sbjct: 423 LHDTPAKNLFEKQDRAFSSGCIRVQKAEQFALFLM-DKSGYPLERYNIHHNVPETSSVSL 481 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++ V+ VY + W + QFR+DIY D Sbjct: 482 KKKITVYSVYRTVWVDQFGFTQFRNDIYHYDK 513 >gi|94968926|ref|YP_590974.1| hypothetical protein Acid345_1899 [Candidatus Koribacter versatilis Ellin345] gi|94550976|gb|ABF40900.1| conserved hypothetical protein [Candidatus Koribacter versatilis Ellin345] Length = 561 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 181/382 (47%), Gaps = 15/382 (3%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQRLR 115 + I P + T +A+ Y + + +LP + ++ G + L Sbjct: 183 DLTHTIAKVGPPFA--GYEATRQAMLQYTQLAKQPDTEKLPLPVGVVYQGGYYDHMPALA 240 Query: 116 ERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +RL GDLDP ++ +D + V FQ RHGL G + S T++A+N+P+ R Sbjct: 241 KRLQQLGDLDPKVIILADAIKYDDPLMGGVAHFQSRHGLPNDGNLTSDTIDALNIPIADR 300 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRV-DRQTPI 230 + QL++ L R + + + V+VN+P L + G L V VG D QTPI Sbjct: 301 LEQLKLALERYRWI-RYQFTSPPVVVNVPEFKLFGYDGSGTQILSMGVNVGDAFDFQTPI 359 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD--- 287 I I+F PYW + +I + +M+ + +D YL+ N + ++D+ GK + + Sbjct: 360 FEGDIRYIVFRPYWYVTPTIQRDEMVPSVEEDRTYLEQNEMEVVDKDGKVIASGAISDAV 419 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE-PILFNNVVRFETSGCVRV 346 + ++ RQ PG NA+ KI F + +N Y+HDTPE +F+ R + GC+ + Sbjct: 420 LKHLKNGSYSIRQRPGADNALGLVKIIFPNSHNVYLHDTPEFKTMFSKAPRALSHGCIHL 479 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 DL WLL+D WS ++E ++ + V L VP+ +Y++A + + +QF Sbjct: 480 EKPADLAYWLLRDKTDWSLDKVKEAMQHGRDNSSVTLTKPVPILILYVTARAQTNGTVQF 539 Query: 406 RDDIYGLDNVHVGIIPLPEDHP 427 DIYG D + +P Sbjct: 540 FKDIYGHDVELKAALAKGYPYP 561 >gi|323492996|ref|ZP_08098133.1| hypothetical protein VIBR0546_16236 [Vibrio brasiliensis LMG 20546] gi|323312775|gb|EGA65902.1| hypothetical protein VIBR0546_16236 [Vibrio brasiliensis LMG 20546] Length = 448 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 102/379 (26%), Positives = 180/379 (47%), Gaps = 14/379 (3%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 S++ ++ ID+ P S Sbjct: 72 PPNSSLIATHRAIAQQQLGELIDAYTPDSS--GYMDLVDTYLHMVKYQKLNTPLYSQTGL 129 Query: 102 LHLGNSSVSVQRLRERLIIS--GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +G+ L +RL I LD K +S +D +E+AVK FQ HGL+ G++ Sbjct: 130 AKVGDKLEQRDVLLQRLEIVDVNLLDVRKDVSW-YDRTLETAVKQFQRLHGLEADGIIGP 188 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T++ +N+P++ R+ L +N R + Q+ ++VN+P+ ++ +G+ +S V Sbjct: 189 ETIKWINLPIEKRLAILAINAERNRYWPVQR--DTIIVVNVPSFQMKYWNSGQEVFQSKV 246 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 +VG+ R TP++ ++++ ++ NP W +P I+ +D++ ++QD +YL NI +I + G Sbjct: 247 VVGKKARPTPVMMTKLDSLILNPTWNVPWKIMVEDIIPKVKQDREYLARQNIMIIPKWGS 306 Query: 280 --EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 + +E+DW++ P F +R Q G+ NA+ K +R Y+HDTP LF+ Sbjct: 307 QEVINPDEIDWDNLNPHQFPYRMTQLSGQANALGLYKFNTPNRRAIYLHDTPSKGLFDET 366 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R +SGC+RV N LL+ EE V + L + +PVH +Y +A Sbjct: 367 QRAFSSGCIRVENADVFADTLLQTQGLVIEQ--EEQVSPTPNQAIPLKSRIPVHIIYQTA 424 Query: 396 WSPKDSIIQFRDDIYGLDN 414 W ++ + +R+DIY LD Sbjct: 425 WY-EEGNVHYREDIYRLDR 442 >gi|254719057|ref|ZP_05180868.1| cell wall degradation protein [Brucella sp. 83/13] Length = 670 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + P ++ A Sbjct: 254 LRYAVDAGEGRIIADRLSGFHDLPRMRVNPKAVLEQLARETDPSAYLRGFQPDNAQ--YA 311 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 312 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 369 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 370 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 429 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 430 LP-HDFGKRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 488 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 489 VPRSIILNEMLPKVMRDTSYLDRNGYEVYV-NGKKVSASAVNWSAVATGKAHIGIRQKPS 547 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 548 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 607 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 608 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|254420106|ref|ZP_05033830.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] gi|196186283|gb|EDX81259.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] Length = 520 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 100/421 (23%), Positives = 178/421 (42%), Gaps = 38/421 (9%) Query: 20 LPMGLSLVEKPIHASVLDEI--INESYHSIVNDRFDNFLAR-VDMGIDSDIPIISKETIA 76 L G L E + ++++ + ++ + D + + P Sbjct: 116 LAYGRVLAEGKVRPETVEDLWEMQKNRVDLPRGLSDALARNILLDWFEGLAPT--DIGYQ 173 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKG-----L 130 Y+ + ++GGWP P P + S + L +RL GDL + G Sbjct: 174 NLSAGYVRYRRLAAQGGWPAFPAGPTIEPNMSDRRIPALIDRLTAEGDLTAANGARLKTE 233 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + + + ++ AV+ FQ+RHGL G + + T +++ + R RQ+ +NL R + L ++ Sbjct: 234 GLTYGSELQQAVQGFQVRHGLGADGRIGTGTQRSLSASAEDRARQIALNLERRRWL-KRD 292 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + + VN AA + ++GK + VIVG + QTP L ++ NP W +P SI Sbjct: 293 VAPERIEVNTAAAIMVYWKDGKPVHSNRVIVGSAENQTPSLEKPFASVVANPPWYVPASI 352 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 +++++ P YL N++++ + Q G A+ Sbjct: 353 ARREILPKG---PAYLAANDMYVQNGT--------------------VIQRAGPKAALGY 389 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K E ++HDTP FN +R + GCVRV+N ++ LL P + Sbjct: 390 VKFELRDSYAIFLHDTPSKAAFNLSMRQRSHGCVRVQNAVEFARLLLSPDP-VKLAQFDT 448 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII--PLPEDHPI 428 TR+TT V E+ V +Y +A+ + FR+D+YG D+ + + P+ Sbjct: 449 AQDTRETTRVTTGREISVRLLYWTAFVDGQGRVAFREDVYGRDDKLAQALGIAVSLPKPV 508 Query: 429 D 429 D Sbjct: 509 D 509 >gi|261754930|ref|ZP_05998639.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|261744683|gb|EEY32609.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] Length = 660 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 244 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 301 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 302 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRDVLA 359 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 360 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 419 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 420 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 478 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 479 VPRSIILNEMLPKVMRDTSYLDRNGYKVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 537 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 538 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 597 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 598 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|182677142|ref|YP_001831288.1| peptidoglycan binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633025|gb|ACB93799.1| Peptidoglycan-binding domain 1 protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 624 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 97/420 (23%), Positives = 160/420 (38%), Gaps = 39/420 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEII-NESYHSIVNDRFDNFLARVDMG---IDSDIPIISKET 74 ++ G I + ++I + + + A + P +E Sbjct: 226 VVAYGRQASGSRIDPHEIGKLIGARPEIADPSLILASVAAAGPEAGTILRGFNPQ--QEG 283 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLD---PSKGL 130 + + +P P L +G V +R RL + G LD G Sbjct: 284 YVALRDKLVAMRQERQPVARRLIPSGPPLRVGMRDPRVALIRARLSLDGKLDKGQTENGA 343 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSST--------LEAMNVPVDLRIRQLQVNLMR 182 S +D+ V AV FQ +GL SG++ T L A + + L N+ R Sbjct: 344 SEIYDSEVSMAVADFQRANGLPASGVLTPQTSAILSGARLSATPLSPHVEHEILA-NMER 402 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + + +G + VN+P + +E +V R V++G+ + TPI + ++ NP Sbjct: 403 WRWMP-HDLGHDRIEVNLPDFEVAVIEKDEVVSRHRVVIGKEETPTPIFSHVMQFLIVNP 461 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 YW +P SI++K+M+ L +P YL + G V RQ P Sbjct: 462 YWNVPASILKKEMLPKLAANPNYLHRLGYEVFKRDGHLV----------------VRQPP 505 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ K F + Y+HDTP F R + GCVRV +L P Sbjct: 506 GERNALGRIKFMFPNDYAVYLHDTPSKHYFEEDKRAFSHGCVRVDEPYHFAEAVLG--PK 563 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 WS I+ + K + L +P+H Y +A + + +D+YG + L Sbjct: 564 WSESRIKG-LFGEKERYITLPKPLPIHLEYFTATVDRFGHLHLSEDVYGYSQKVRIALGL 622 >gi|150396784|ref|YP_001327251.1| hypothetical protein Smed_1575 [Sinorhizobium medicae WSM419] gi|150028299|gb|ABR60416.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 631 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 158/373 (42%), Gaps = 25/373 (6%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL---PIRPLHLGNSSVSV 111 V I+S P ++ + + + + P + P L G S+ + Sbjct: 252 ASGDVAALIESRNPKSAQ--FEALRQELERLRTQVEA--TPRVEIAPGTLLKPGESNPEL 307 Query: 112 QRLRE--RLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + +L S L + + + + V+ FQ HGL G+V +++ Sbjct: 308 ANVIAGIKLKASDALKTEHAVVLAAYGGTPDYTPELVPVVEAFQKEHGLKADGIVGQASI 367 Query: 163 EAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 A+ + +IR++++ + + + L + +G RYV +N PA + E G V+ Sbjct: 368 RAITGGDTIGEKIRKIEIAMEQARWLPDG-LGDRYVFINQPAFTASYTEQGAEQFSMRVV 426 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG QT I + NPYW +P+SII +M+ LR DP YL + G+ Sbjct: 427 VGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPGYLDRMGYQVEVG-GRV 485 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 V V+W RQ P NA+ KI F + + YMHDTP F R + Sbjct: 486 VSSTAVNWYGSTNS-IAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALS 544 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 GCVR+ + + +L S + E + + + ++ +VPV+ Y +AW KD Sbjct: 545 HGCVRLADPRRMAAAVL----GVSVDEVGEEISGGRNKALPVSAKVPVYVSYFTAWPNKD 600 Query: 401 SIIQFRDDIYGLD 413 +++ +D+Y D Sbjct: 601 GTVEYFNDVYERD 613 >gi|306838973|ref|ZP_07471795.1| cell wall degradation protein [Brucella sp. NF 2653] gi|306405940|gb|EFM62197.1| cell wall degradation protein [Brucella sp. NF 2653] Length = 666 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + P ++ A Sbjct: 250 LRYAVDAGEGRIIADRLSGFHDLPRMRVNPKAVLEQLARETDPSAYLRGFQPDNAQ--YA 307 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 308 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 365 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 366 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 425 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 426 LP-HDFGKRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 484 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 485 VPRSIILNEMLPKVMRDTSYLDRNGYEVYV-NGKKVSASAVNWSAVATGKAHIGIRQKPS 543 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 544 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 603 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 604 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|146280663|ref|YP_001170816.1| putative periplasmic protein [Pseudomonas stutzeri A1501] gi|145568868|gb|ABP77974.1| putative periplasmic protein [Pseudomonas stutzeri A1501] Length = 495 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 110/393 (27%), Positives = 190/393 (48%), Gaps = 21/393 (5%) Query: 30 PIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDI 88 + L + E + D+ + + + + + A+ A+ Y+D+ Sbjct: 100 HLARGRLRQADIEPIWRSPDAPEADDRQRLLQIAVQGLADLPTAFDRARPPHAL--YRDL 157 Query: 89 LSR---------GGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + W LP P L G LRE L+ + L + +D + Sbjct: 158 RAAYARQRQAALPAWRPLPSGPTLRPGMRDERSPLLRELLLAG--AGSTPALDLRYDDEL 215 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 AV+ FQ++HGL+ G+V ++TL A+NV R+ QL++NL R++ + + + + +LV Sbjct: 216 VEAVRGFQLQHGLEADGVVGAATLVALNVSPASRLDQLRINLERLRWI-SRDLEPQSLLV 274 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 +I A L + ++ VGR RQTP+L SRI+R+ NP W +P +I+++D + L Sbjct: 275 DIAGARLIYFRDSCPFWQTRTQVGREARQTPLLKSRISRLTLNPTWTVPPTILKQDKLPL 334 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 +R+D YL + + +ID +G V VDW P + RQD G N + I F + Sbjct: 335 IREDIAYLARHQMRVIDAQGNAVDPYAVDW--ANPRGILLRQDAGPANPLGQVAIRFANP 392 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP LF R +SGCVRV + + L LL++ R + ++++ +T Sbjct: 393 FSVYLHDTPSKPLFERAARAVSSGCVRVESALQLVDLLLEEDE---RDTVARLLQSGETH 449 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 +LA + P+ Y +A + + ++R DIY Sbjct: 450 EYRLARQTPILMAYWTADADDSGLPRYRPDIYK 482 >gi|149191672|ref|ZP_01869915.1| hypothetical protein VSAK1_04600 [Vibrio shilonii AK1] gi|148834513|gb|EDL51507.1| hypothetical protein VSAK1_04600 [Vibrio shilonii AK1] Length = 548 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 154/318 (48%), Gaps = 14/318 (4%) Query: 103 HLGNSSVSVQ--RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LG++ L ERL S + FD ++ A++ FQ +GL+ G++ + Sbjct: 226 RLGDTLPQEAYLTLIERLSESNVF-ITAREDRYFDELLDLAIREFQTIYGLNDDGIIGPN 284 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T+E +N ++R L +N R + +Q+ ++VN+P LE + G+ S VI Sbjct: 285 TIEWLNKSASDKLRILALNSERSRLWPQQR--ENIIVVNVPNFQLEYWDEGEERFESRVI 342 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK- 279 VGR RQTP+L ++++ ++ NP W +P I+ KD++ ++Q+P YL I +++ Sbjct: 343 VGRASRQTPLLETKMDSLILNPTWNVPWKIMVKDIIPKVKQNPTYLFSQRIEILEGWNNQ 402 Query: 280 -EVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + +DW + RQ G++NA+ K + ++HDTP LF+ + Sbjct: 403 ARIDPTMIDWQEVNARRFPYRMRQQAGELNALGQYKFNTPNAQAIFLHDTPSKHLFDESL 462 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGCVRV + LL+ +E+V R + L +PVH +Y +AW Sbjct: 463 RAFSSGCVRVEHADQFAQVLLEAQGK----TLEDVATDRPNKAIALKQRIPVHIIYQTAW 518 Query: 397 SPKDSIIQFRDDIYGLDN 414 D FR D+Y D Sbjct: 519 M-SDGKAHFRGDVYQYDA 535 >gi|54309518|ref|YP_130538.1| hypothetical protein PBPRA2351 [Photobacterium profundum SS9] gi|46913954|emb|CAG20736.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 572 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 104/365 (28%), Positives = 166/365 (45%), Gaps = 17/365 (4%) Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLII 120 + S P+ + + A+ + + WP + LG+ L L Sbjct: 198 FVTSLKPV--NDNYNKMILAMQTLE-VSESEHWPGFYQQGIIRLGDRLKDPDSLITILER 254 Query: 121 SGDLDPSKGLSVA------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 GD+ + + VK FQ RHGL G++ T + + RIR Sbjct: 255 MGDITEYDADRMRTSQLRSLTIPLSLGVKTFQKRHGLKVDGVIGPKTRYWLAITPKERIR 314 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 L +N R++ + ++VNIP L + K S VIVGR R+TP++ SR Sbjct: 315 VLALNAQRVRLWPAEY--NSVLIVNIPGYELNLWLDNKHVFDSKVIVGRPSRRTPLISSR 372 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPE 292 +N ++FNPYW +P+SI++KD++ R+D YL +N +I ++ + + + Sbjct: 373 VNSVVFNPYWNVPKSIMRKDILPKARRDRSYLYRHNYAVIRSWNSSEQIPIHTIHPSMLY 432 Query: 293 P--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + RQ PG NA+ K + N+ Y+HDTP LFN R +SGCVRV N Sbjct: 433 AKTFPYRLRQKPGNKNALGLYKFIIPNDNSIYLHDTPAKSLFNKDDRAFSSGCVRVENAD 492 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L + LL + + E+ ++T + L +V VH +Y +AW ++ FRDD+Y Sbjct: 493 VLALILL-NYSGVTDQRFYELSGRKQTKTIGLRNKVKVHLIYQTAWVDDGGLVNFRDDVY 551 Query: 411 GLDNV 415 D V Sbjct: 552 LYDKV 556 >gi|86748553|ref|YP_485049.1| hypothetical protein RPB_1428 [Rhodopseudomonas palustris HaA2] gi|86571581|gb|ABD06138.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 718 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 103/434 (23%), Positives = 173/434 (39%), Gaps = 45/434 (10%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLA--RVDMGIDSDIPIISKETI 75 ++ +H S I H D + + S P Sbjct: 247 MMDYARQAQSGRMHWSQAGSDIQYPEHPIDPADVLASVTTAKDASAALGSYNPPH--RLY 304 Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLD 125 + +K +A + I +P R + V +LR +L I+ D Sbjct: 305 KELKKKLAELRGESDGPVLKIAEGETLKFVPARKKQAAVTMDDPRVPQLRAKLGITED-- 362 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIK 184 S +DA V AV+ FQ L P+G++D T++A+N P R I + VN+ R + Sbjct: 363 ---ADSTTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALNTPKRDRTIDTIMVNMERWR 419 Query: 185 KLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIM 239 L Q +G YV++N+P +L+ + NG + V++G+ TP+L + I Sbjct: 420 WLPRQLGAASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVIGKPGKHATPLLTETMKYIT 479 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +P SII + + L QDP L + M + + Sbjct: 480 VNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRD---------------GSIHIS 524 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK- 358 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 525 QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDQYAAALLNI 584 Query: 359 --DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 ++ I + R + T +PV+ Y +A+ D +Q R D+YG D Sbjct: 585 AMPDKDYTPAKIRS-MYGRSEVNLNFPTPIPVNITYQTAFVDDDGKLQLRKDVYGRDARM 643 Query: 417 VGIIPLPEDHPIDS 430 + ++ + +++ Sbjct: 644 LALLKNDKGKNLEA 657 >gi|265984050|ref|ZP_06096785.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|264662642|gb|EEZ32903.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] Length = 660 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + P ++ A Sbjct: 244 LRYAVDAGEGRIIADRLSGFHDLPRMRVNPKAVLEQLARETDPSAYLRGFQPDNAQ--YA 301 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 302 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 359 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 360 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 419 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 420 LP-HDFGKRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 478 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 479 VPRSIILNEMLPKVMRDTSYLDRNGYEVYV-NGKKVSASAVNWSAVATGKAHIGIRQKPS 537 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 538 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 597 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 598 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|163843230|ref|YP_001627634.1| peptidoglycan binding domain-containing protein [Brucella suis ATCC 23445] gi|163673953|gb|ABY38064.1| Peptidoglycan-binding domain 1 protein [Brucella suis ATCC 23445] Length = 510 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 94 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 151 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 152 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 209 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 210 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 269 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 270 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 328 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 329 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 387 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 388 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 447 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 448 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|161618916|ref|YP_001592803.1| peptidoglycan binding domain-containing protein [Brucella canis ATCC 23365] gi|161335727|gb|ABX62032.1| Peptidoglycan-binding domain 1 protein [Brucella canis ATCC 23365] Length = 510 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 99/411 (24%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 94 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 151 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 152 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRDVLA 209 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 210 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 269 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT +++I ++FNP W Sbjct: 270 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKIQTVVFNPSWG 328 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 329 VPRSIILNEMLPKVMRDTSYLDRNGYKVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 387 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 388 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 447 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 448 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|328543832|ref|YP_004303941.1| peptidoglycan binding domain protein [polymorphum gilvum SL003B-26A1] gi|326413576|gb|ADZ70639.1| Putative peptidoglycan binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 639 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 103/428 (24%), Positives = 172/428 (40%), Gaps = 24/428 (5%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDN--FLARVDMGIDSDIPIISKETI 75 +L L + + + + + + V+ ++S P E Sbjct: 218 VLTYMLDAGRGRVDPNRISGYHDLPRRKIDLVAQIHGLQAAGNVEAFLESRQPQ--GEHF 275 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS----VQRLRERLIISGDLDPSKGL 130 +A + G ++ L G S V +R+ + D + L Sbjct: 276 KALVAELAALRG-AQEGERIQISLATLLKPGTDSAELANIVAAIRKNGSEALKADHAAIL 334 Query: 131 S-----VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-PVDLRIRQLQVNLMRIK 184 S + + VK FQ + L P G+V +T+ A+ +I +L++ L R + Sbjct: 335 SAYDGGTLYGPELVDLVKAFQKENRLTPDGIVGKATIRALVGDSNADKIAKLELALERSR 394 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + +G R V +N PA + VE+GK L V+VG QT + +I + +NPYW Sbjct: 395 WLP-EDLGSRRVFINQPAFTATYVESGKAPLAMRVVVGTKANQTSFFYDQIETVEYNPYW 453 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDP 302 +P SII + + L DP YL + GK + VDW++ RQ P Sbjct: 454 GVPYSIIVNEKLPKLAADPGYLDKIGYEVTTASGKPIPSASVDWHAVATKKLSVNVRQRP 513 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G NA+ KI F +++ YMHDTP LFN VR + GCVR+ + + +L Sbjct: 514 GSDNALGELKILFPNKHAIYMHDTPSKSLFNKDVRAFSHGCVRLSDPRAMAAAVL----G 569 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 S+ ++ + K + +PV+ Y +AW D I + D+Y D + Sbjct: 570 KSKDYVASRIAGGKNESEDVTGVIPVYVAYFTAWPETDGTIGYYGDVYDRDMYLTRALEA 629 Query: 423 PEDHPIDS 430 + + Sbjct: 630 TRKTRLQA 637 >gi|227822250|ref|YP_002826221.1| peptidoglycan binding protein, putative [Sinorhizobium fredii NGR234] gi|227341250|gb|ACP25468.1| peptidoglycan binding protein, putative [Sinorhizobium fredii NGR234] Length = 630 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 93/409 (22%), Positives = 161/409 (39%), Gaps = 22/409 (5%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVN--DRFDNFLARVDMGIDSDIPIISKETIA 76 +L V I + + ++ V+ D D+ + Sbjct: 211 VLTYVQDTVRGRIDPNKISGY-HDFKRKSVDLVAFLDKAATSADVAALIEERNPKSPQFL 269 Query: 77 QTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRE--RLIISGDLDPSKGL--- 130 ++ + + E+ P L G+++ + + +L S L + Sbjct: 270 ALKQELERLRAETDAAPRVEIAPGTLLKPGDNNPELANIVAGIKLKASEALKAEHAVVLA 329 Query: 131 ----SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIK 184 + + + S V+ FQ HGL G+V +++ + +I +L++ + + + Sbjct: 330 GYQGTPEYTPELVSLVEAFQKEHGLKADGVVGQASIRVLTGGDTTASKIDKLEIAMEQAR 389 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L +G RYV +N PA ++G V+VG QT H I + NPYW Sbjct: 390 WLPN-DLGNRYVFINQPAFMAYYTDHGAEQFSMRVVVGSKANQTYFFHDEIQTVEVNPYW 448 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P+SII +M+ LR DP YL + G+ V VDW RQ P Sbjct: 449 GVPQSIIVNEMLPKLRSDPSYLDRMGYQVEVG-GRVVPSYAVDWYGSTNS-VAVRQPPSS 506 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ KI F + + YMHDTP F R + GCVR+ + +L S Sbjct: 507 DNALGELKILFPNSHAIYMHDTPSKSFFKRDQRALSHGCVRLAEPRRMAAAVL----GVS 562 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + + + + + +VPV+ Y +AW KD +++ +D+Y D Sbjct: 563 MDDVGNEIAQGRNRALPVPQKVPVYVSYFTAWPNKDGKVEYFNDVYERD 611 >gi|307946894|ref|ZP_07662229.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] gi|307770558|gb|EFO29784.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] Length = 681 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 93/422 (22%), Positives = 177/422 (41%), Gaps = 21/422 (4%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IA 76 +L L I + L E ++ + V+ + + + + + Sbjct: 259 VLTYILDAERGRIDPNRLSEY-HDLPRAEVDLVASLRDVQASTDVKVAMKAHQPQDDVFS 317 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG---------DLDP 126 + + +A + + L +G SS V+ + + +G L Sbjct: 318 ELQSELAKLRAEDEEEDAIVIAPGTFLKVGRSSPEVKNIVAAIRKNGSDALREKHMKLLV 377 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKK 185 S + + + VK FQ + L G+V +T+ AM +I ++++ + R + Sbjct: 378 SYTGENLYSQEIANLVKGFQKENKLAADGIVGKNTIRAMVGETNAAKIAKIELAMERRRW 437 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L ++ +G R V +N PA + E + L V+VG+ QT + + + +NPYW Sbjct: 438 LPDE-LGERRVFINQPAFTATFYEGSSLPLSMRVVVGKKSNQTNFFYDNVEIVEYNPYWG 496 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPG 303 +P SII +M+ L +P YL + G++V V+W + RQ PG Sbjct: 497 VPYSIIVNEMIPKLAANPYYLDQAGYEVTTPSGRKVSSANVNWYAVASRQQSINVRQYPG 556 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ KI F ++++ YMHDTP LFN R + GCVR+ + + +L Sbjct: 557 AKNALGVVKILFPNKHHIYMHDTPAKSLFNKDTRAYSHGCVRLHDPKAMAAAVL----GK 612 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 S+ ++ + + K ++ ++PV+ Y +AW +++ D+Y D + + Sbjct: 613 SKDYVSQQIAKGKNRQERVEGDLPVYVSYFTAWPNDAGQVEYFADVYDRDRHLLKALKKT 672 Query: 424 ED 425 +D Sbjct: 673 DD 674 >gi|265994887|ref|ZP_06107444.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262766000|gb|EEZ11789.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 538 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 122 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 179 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 180 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 237 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R++ Sbjct: 238 AHADASVYDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLRW 297 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 298 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 356 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 357 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 415 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 416 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 475 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 476 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|260563978|ref|ZP_05834464.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|265991052|ref|ZP_06103609.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|260153994|gb|EEW89086.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|263001836|gb|EEZ14411.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] Length = 538 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 122 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 179 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 180 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 237 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R++ Sbjct: 238 AHADASVYDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLRW 297 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 298 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 356 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 357 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 415 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 416 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 475 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 476 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|256113506|ref|ZP_05454340.1| cell wall degradation protein [Brucella melitensis bv. 3 str. Ether] Length = 531 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 115 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 172 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 173 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 230 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R++ Sbjct: 231 AHADASVYDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLRW 290 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 291 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 349 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 350 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 408 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 409 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 468 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 469 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|90425452|ref|YP_533822.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90107466|gb|ABD89503.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB18] Length = 730 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 103/434 (23%), Positives = 175/434 (40%), Gaps = 46/434 (10%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFD--NFLARVDMGIDSDIPIISKETI 75 +L +H S + I H + A + S P + Sbjct: 260 MLDYARQAQSGRMHWSQVSGDIQYPEHPIDPAEVLANVTAAADPSAALASYNPPH--KMY 317 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LH----------LGNSSVSVQRLRERLIISGDL 124 Q + +A + G ++ P L + V +LR +L I Sbjct: 318 RQLKAKLAELRGQGDGPGAIQIAEGPALKYIPARKKQAAVEVDDPRVPQLRAKLGI---- 373 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRI 183 S +DA V +AV+ FQ L +G++D T+ A+N P R I + VN+ R Sbjct: 374 -SENPDSTRYDAKVAAAVRKFQDSADLKETGVLDERTVTALNSPKSDRQIDTVIVNMERW 432 Query: 184 KKLL----EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ-TPILHSRINRI 238 + L +G YV++NIP +L+ +++G + V+VG+ TP+L + I Sbjct: 433 RWLPRVLGAPSLGDAYVILNIPDYTLKVMQHGAPVWTTRVVVGKPGNHATPLLTETMKYI 492 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 NP W +P SII + + L+QDP L + + + + Sbjct: 493 TVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRD---------------GSIHI 537 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q PG+ NA+ + F ++ Y HDTP+ LF+ R + GC+RV+N LL Sbjct: 538 SQPPGERNALGRIRFNFPNKFLVYQHDTPDKNLFSRDARAFSHGCMRVQNPDQYAATLLN 597 Query: 359 ---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ I + + +K AT +PV+ Y +A+ +Q R D+YG D Sbjct: 598 IAMPNERYTPEKIRG-MYGKSEIDLKFATPIPVNLTYQTAFVDDAGKLQTRKDVYGRDAA 656 Query: 416 HVGIIPLPEDHPID 429 + I+ P+ ++ Sbjct: 657 MLAILRNPKGKDLE 670 >gi|23501845|ref|NP_697972.1| hypothetical protein BR0962 [Brucella suis 1330] gi|23347781|gb|AAN29887.1| conserved hypothetical protein [Brucella suis 1330] Length = 572 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 156 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 213 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 214 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRDVLA 271 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 272 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 331 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 332 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 390 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 391 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 449 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 450 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 509 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 510 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 555 >gi|217978718|ref|YP_002362865.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217504094|gb|ACK51503.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 629 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 97/409 (23%), Positives = 167/409 (40%), Gaps = 27/409 (6%) Query: 19 ILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-TIA 76 I+ + + +I + + + + + Sbjct: 241 IVSYARQASGARVDPRQISALIGLRPEVADPSVALATVSTAGQNAGAALLAFNPPQPAYQ 300 Query: 77 QTEKAI-AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + +P P L +G V +R RL + G + ++ + Sbjct: 301 ALRAKLNETRRAAAPVARAAAIPTGPTLKVGMRDPRVPLIRSRLSLDG--REGEPENLVY 358 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR-QLQVNLMRIKKLLEQKMGL 193 D V SAV FQ +GL SG +++ T+ ++ R+ ++ N+ R + + + MG Sbjct: 359 DTQVASAVADFQKANGLPGSGQLNARTIALLSGGDQSRVEAEILANMERWRWMP-RDMGE 417 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VNIP + +ENG V ++ V+VG+ D TP+ + + ++ NPYW +P+SII+K Sbjct: 418 SRIEVNIPDYEVSVIENGAVISQNRVVVGKEDTPTPVFSNTMQFLIVNPYWTVPQSIIRK 477 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 +MM + DP YL + + GK RQ PG+ NA+ K Sbjct: 478 EMMPKIAADPNYLHRMGYEAVWKNGK----------------LGVRQPPGERNALGRIKF 521 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F + Y+HDTP LF R + GCVRV + +L WS +++++ Sbjct: 522 MFPNDYAVYLHDTPSRALFEQHKRAFSHGCVRVDDPFRFAQSVLG--KGWSEERVQKLI- 578 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 K V LA +P+H Y +A +Q +DIYG + L Sbjct: 579 GGKERYVHLAKPLPIHLEYFTAKVDPYGQLQLSEDIYGFSRKVRAALGL 627 >gi|17987297|ref|NP_539931.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] gi|256044628|ref|ZP_05447532.1| cell wall degradation protein [Brucella melitensis bv. 1 str. Rev.1] gi|17982976|gb|AAL52195.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] Length = 531 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 115 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 172 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 173 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 230 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R++ Sbjct: 231 AHADASVYDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLRW 290 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 291 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 349 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 350 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 408 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 409 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 468 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 469 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|239831842|ref|ZP_04680171.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824109|gb|EEQ95677.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 670 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 96/424 (22%), Positives = 172/424 (40%), Gaps = 21/424 (4%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-ETIAQT 78 L + E + A L + + + LA E A Sbjct: 254 LRYAIDAGEGRVIADRLSGFHDLPRNRVDPKAVLEKLASESDPAAYLHGFQPDNEQYAAL 313 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVS---VQRLRERLIISGDLDP------SKG 129 + +A + + L + G+++ V L R + L + Sbjct: 314 KSELANTEPPSAEPIRISL-NGVIKPGDANPQLGKVVALISRHAPASYLAEHRQVLDAHA 372 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLE 188 +D + +A+K +Q G P G++ +TL A+ ++ ++ ++ R++ L Sbjct: 373 NGDVYDPELVAAIKDYQKLSGSTPDGVIGRNTLSALQGEQSSIKRDRILYSMERLRWLP- 431 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 G RYV+VN PA E E+GK L V++G QT ++++ ++FNP W +PR Sbjct: 432 HDFGTRYVMVNQPAYRAEYFEDGKEKLAMNVVIGSPSHQTYFFYNKVQTVVFNPSWGVPR 491 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKIN 306 SII +M+ + +D YL N + GK+V V+W++ RQ P N Sbjct: 492 SIILNEMLPKVMRDTSYLDRNGYEVY-ADGKKVSASAVNWSAVAAGKAHVGIRQKPSLDN 550 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ KI F + ++ YMHDTP F+ +R + GC+R+ D+ ++ T Sbjct: 551 ALGELKILFPNSHDIYMHDTPAKSYFSRDMRALSHGCIRLERPRDMAAAVMGTTVQDLDK 610 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 + + +K+ VPV+ Y +AW I++ D+Y D+ D Sbjct: 611 YF-----GKNERGIKVKEPVPVYISYFTAWPDASGQIRYYGDVYDRDSGLQKAFDKTADS 665 Query: 427 PIDS 430 + + Sbjct: 666 RLAA 669 >gi|256369387|ref|YP_003106895.1| hypothetical protein BMI_I960 [Brucella microti CCM 4915] gi|255999547|gb|ACU47946.1| hypothetical protein BMI_I960 [Brucella microti CCM 4915] Length = 572 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 156 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 213 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 214 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 271 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 272 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 331 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 332 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 390 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 391 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 449 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 450 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 509 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 510 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 555 >gi|209694858|ref|YP_002262786.1| hypothetical protein VSAL_I1327 [Aliivibrio salmonicida LFI1238] gi|208008809|emb|CAQ79012.1| putative exported protein [Aliivibrio salmonicida LFI1238] Length = 512 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 184/393 (46%), Gaps = 19/393 (4%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 LD I + ++ +F + + + SK+ + Y D + Sbjct: 121 GRLDNNIGKPSLFLIEKVNQHFEDDTLTALVNQLKPQSKQ-YQDLYTRLYRYYDPYHQEA 179 Query: 94 WPELPIRPLHLGNSSVSVQ--RLRERLIISGDLDPS------KGLSVAFDAYVESAVKLF 145 R L + L RL ISG+L+ ++ + + VK F Sbjct: 180 PKLYSSRLLKPNQ---DIPYKSLVYRLQISGELNEEQIHYFLSQEGDKYNNELVNVVKSF 236 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q RHGL G+V TL +N+ + R+R + +N+ R++ + R+VLVNIP+ + Sbjct: 237 QKRHGLVVDGIVGKRTLYWLNMSANERVRIMALNIQRLRLW--ENKNARFVLVNIPSYEM 294 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 G++ +S VIVG+ +R+TP+ +R++ I+FNP W +P I+++D++ ++ Y Sbjct: 295 GYWLKGELVFKSKVIVGKPERKTPLFTTRLDSIVFNPNWKVPTKIMKEDILPKALENQDY 354 Query: 266 LKDNNIHMIDEK--GKEVFVEEVDWNS--PEPPNFIFRQDPGKINAMASTKIEFYSRNNT 321 L +N ++ + + E ++W + + + RQ G NA+ K +RN Sbjct: 355 LLTHNYEVLPSWLSDEVIPFESIEWETMTVDNFPYKLRQKSGNANALGRYKFNTPNRNAI 414 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 Y+HDTP LFN R +SGC+RV + L+K++ ++ + KT V Sbjct: 415 YLHDTPSRSLFNKQHRAYSSGCIRVEKASEFAQLLMKES-HFTAKDYAGYHRLPKTNTVG 473 Query: 382 LATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L+ ++ V+ +Y +AW + IQFR+D+Y D Sbjct: 474 LSQKIAVYTIYQTAWVDEADTIQFRNDVYRYDE 506 >gi|90414498|ref|ZP_01222473.1| hypothetical protein P3TCK_00890 [Photobacterium profundum 3TCK] gi|90324406|gb|EAS40968.1| hypothetical protein P3TCK_00890 [Photobacterium profundum 3TCK] Length = 572 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 104/365 (28%), Positives = 164/365 (44%), Gaps = 17/365 (4%) Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLII 120 + S P+ + + A+ + WP + LG + L L Sbjct: 198 FVTSLKPV--NDNYNKMILAMQALEA-SESEHWPGFYQQGIIRLGGRLNNPDSLITILER 254 Query: 121 SGDLDPSKGLS------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 GD+ + VK FQ RHGL G++ T + + RIR Sbjct: 255 MGDITEYDADRMRASQLRTLTIPLSLGVKTFQKRHGLKVDGVIGPKTRYWLAITPKERIR 314 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 L +N R++ + ++VNIP L + K S VIVGR R+TP++ SR Sbjct: 315 VLALNAQRVRLWPAE--HNSVLIVNIPGYDLNLWLDNKHVFDSKVIVGRPSRRTPLISSR 372 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPE 292 +N ++FNPYW +P+SI++KD++ R+D YL +N +I ++ + + + Sbjct: 373 VNSVVFNPYWNVPKSIMRKDILPKARRDRSYLYRHNYAVIRSWNSSEQIPIHTIHPSMLY 432 Query: 293 P--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + RQ PG NA+ K + ++ Y+HDTP LFN R +SGCVRV N Sbjct: 433 AKTFPYRLRQKPGNKNALGLYKFNIPNDDSIYLHDTPAKSLFNKDDRAFSSGCVRVENAD 492 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L + LL + + E+ +KT + L +V VH +Y +AW ++ FRDD+Y Sbjct: 493 VLALILL-NYSGVTEQRFYELSGRKKTKTIGLRNKVQVHLIYQTAWVDDGGLVNFRDDVY 551 Query: 411 GLDNV 415 D V Sbjct: 552 LYDKV 556 >gi|306840472|ref|ZP_07473231.1| cell wall degradation protein [Brucella sp. BO2] gi|306289487|gb|EFM60705.1| cell wall degradation protein [Brucella sp. BO2] Length = 666 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 100/409 (24%), Positives = 169/409 (41%), Gaps = 23/409 (5%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-ETIAQT 78 L + E I A L + + LAR A Sbjct: 250 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARETDPSAYLHGFQPDNAQYAAL 309 Query: 79 EKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDPSK 128 ++A+A RG + + G+ S V L R L D+ + Sbjct: 310 KRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLAAH 367 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKKLL 187 + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L Sbjct: 368 ADARVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRWLP 427 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +P Sbjct: 428 -HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVP 486 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKI 305 RSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 487 RSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPSLD 545 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 546 NSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLD 605 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 606 KYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|225627441|ref|ZP_03785478.1| cell wall degradation protein [Brucella ceti str. Cudo] gi|254706835|ref|ZP_05168663.1| cell wall degradation protein [Brucella pinnipedialis M163/99/10] gi|254714056|ref|ZP_05175867.1| cell wall degradation protein [Brucella ceti M644/93/1] gi|254716887|ref|ZP_05178698.1| cell wall degradation protein [Brucella ceti M13/05/1] gi|225617446|gb|EEH14491.1| cell wall degradation protein [Brucella ceti str. Cudo] Length = 670 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 254 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 311 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 312 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 369 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 370 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 429 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 430 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 488 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 489 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 547 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 548 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 607 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 608 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|256254952|ref|ZP_05460488.1| cell wall degradation protein [Brucella ceti B1/94] Length = 670 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 254 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 311 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 312 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 369 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 370 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 429 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 430 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 488 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 489 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 547 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 548 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 607 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 608 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|254701720|ref|ZP_05163548.1| cell wall degradation protein [Brucella suis bv. 5 str. 513] gi|261752272|ref|ZP_05995981.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261742025|gb|EEY29951.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] Length = 634 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 218 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 275 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 276 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 333 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 334 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 393 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 394 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 452 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 453 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 511 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 512 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 571 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 572 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|260168681|ref|ZP_05755492.1| cell wall degradation protein [Brucella sp. F5/99] Length = 666 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 250 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 307 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 308 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 365 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 366 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 425 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 426 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 484 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 485 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 543 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 544 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 603 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 604 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|256159684|ref|ZP_05457437.1| cell wall degradation protein [Brucella ceti M490/95/1] Length = 666 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 250 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 307 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 308 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 365 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 366 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 425 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 426 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 484 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 485 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 543 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 544 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 603 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 604 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|225852468|ref|YP_002732701.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|225640833|gb|ACO00747.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] Length = 510 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 96/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 94 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 151 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 152 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 209 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R++ Sbjct: 210 AHADASVYDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLRW 269 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 270 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 328 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 329 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 387 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 388 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 447 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 448 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|261253179|ref|ZP_05945752.1| hypothetical protein VIA_003204 [Vibrio orientalis CIP 102891] gi|260936570|gb|EEX92559.1| hypothetical protein VIA_003204 [Vibrio orientalis CIP 102891] Length = 517 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 177/379 (46%), Gaps = 12/379 (3%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 + + + + I+ P + P + Sbjct: 141 PPQSAQIALKRGISQQHLAELIERYTP--DSQEYQYLIDTYLHIIKFDKLNTPPYRQVGI 198 Query: 102 LHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 +G+ + L +RL I DL + FD ++ AVK FQ HGL P G++ Sbjct: 199 KRVGDRLENRDVLIQRLSIVDVDLIDVRKDIRWFDQTLKVAVKQFQNLHGLKPDGIIGPE 258 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N+P++ R+ L +N RI+ Q+ ++VN+P+ + +G+ S V+ Sbjct: 259 TIKWINLPIEKRLSTLAINAERIRYWPSQR--DTIIVVNVPSFQMTYWSSGEEVFESKVV 316 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK- 279 VG+++R TP++ R++ ++ NP W +P I+ +D++ ++ D YL NI +I + G Sbjct: 317 VGKIERPTPLMQIRLDSLILNPTWNVPWKIMVEDIIPKVQHDRAYLTKQNIKIIPKWGSD 376 Query: 280 -EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + E +DW++ P +F +R Q+ G NA+ K +R ++HDTP LF+ Sbjct: 377 EIINPETIDWDNLNPSSFPYRMTQESGNSNALGLYKFNTPNRRAIFLHDTPSKSLFSRQQ 436 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N L++ R ++E + L + VPVH +Y +AW Sbjct: 437 RAFSSGCIRVENADVFAKRLIEAQGVSRRAKLDE--PPGPNQSIPLKSRVPVHIIYQTAW 494 Query: 397 SPKDSIIQFRDDIYGLDNV 415 ++ + +R+DIY LD Sbjct: 495 Y-EEGSVHYREDIYRLDKA 512 >gi|260566489|ref|ZP_05836959.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|260156007|gb|EEW91087.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] Length = 634 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 98/411 (23%), Positives = 171/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 218 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 275 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 276 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRDVLA 333 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 334 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 393 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 394 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 452 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 453 VPRSIILNEMLPKVMRDTSYLDRNGYKVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 511 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 512 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 571 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 572 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|261218691|ref|ZP_05932972.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|260923780|gb|EEX90348.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] Length = 660 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 244 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 301 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 302 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 359 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 360 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 419 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 420 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 478 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 479 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 537 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 538 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 597 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 598 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|265998101|ref|ZP_06110658.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] gi|262552569|gb|EEZ08559.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] Length = 660 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 244 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 301 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 302 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 359 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 360 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 419 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 420 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 478 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 479 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 537 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 538 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 597 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 598 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|265999484|ref|ZP_05466569.2| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|263094225|gb|EEZ18102.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] Length = 538 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 96/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 122 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 179 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 180 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 237 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R++ Sbjct: 238 AHADASVYDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLRW 297 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 298 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 356 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 357 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 415 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 416 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 475 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 476 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|326408985|gb|ADZ66050.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28] gi|326538698|gb|ADZ86913.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90] Length = 531 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 96/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 115 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 172 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 173 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 230 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R++ Sbjct: 231 AHADASVYDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLRW 290 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 291 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 349 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 350 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 408 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 409 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 468 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 469 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|254507080|ref|ZP_05119218.1| cell wall degradation protein [Vibrio parahaemolyticus 16] gi|219550075|gb|EED27062.1| cell wall degradation protein [Vibrio parahaemolyticus 16] Length = 517 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 84/295 (28%), Positives = 150/295 (50%), Gaps = 9/295 (3%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL + +D + A+K FQ HGL G++ T + +NV + R+ L +N R Sbjct: 221 DLANVRRDVTYYDMSLVPAIKQFQKLHGLKEDGVIGPETAKWLNVSMKDRLTTLALNAER 280 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 I+ ++VN+P+ + GK S V+VGR R TP++ + ++ ++ NP Sbjct: 281 IRYWPSD--KDTIIVVNVPSYEMTYWHGGKNVFESKVVVGRQARPTPLMITNLDTLILNP 338 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR- 299 W +P I+ +D++ +++DP+YL +I ++ + G + + +++DW++ P +F +R Sbjct: 339 TWNVPWKIMVEDIIPKMKEDPEYLTRQHIEILPKWGSKERIDPQQIDWDAMNPKSFPYRM 398 Query: 300 -QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q G NA+ K ++ Y+HDTP LFN R +SGC+RV + LL+ Sbjct: 399 TQLSGNQNALGLYKFNTPNKRAIYLHDTPSKGLFNEPQRAFSSGCIRVEHADVFASRLLE 458 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++ + R + L +PVH +Y +AW ++ +R+DIY LD Sbjct: 459 HQ-GLTKSKL-SAEADRSNKKIPLRKRIPVHIIYQTAWF-EEGKTHYREDIYQLD 510 >gi|260772914|ref|ZP_05881830.1| hypothetical protein VIB_001376 [Vibrio metschnikovii CIP 69.14] gi|260612053|gb|EEX37256.1| hypothetical protein VIB_001376 [Vibrio metschnikovii CIP 69.14] Length = 512 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 16/392 (4%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 L+ I+ S R +A + + + + Q A F + + Sbjct: 130 GKLNRILPLPSASS---RLALSVAAGTPAMADLVLQHAPQDPAYHQLVYAYGFLSALKTT 186 Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G+ L +RL + D+ + +D + +K FQ HG Sbjct: 187 PLPVYRQAGLKRPGDKLDDRPTLIQRLALVNIDVTVIRDDVSWYDNSLIEPIKHFQQLHG 246 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L+ G++ TL+ +N+ V+ R+ + +N R++ ++VN+P+ L+ Sbjct: 247 LNADGVIGPQTLKWLNLSVEERLGLIALNAERMRLWPTSN---TSIVVNVPSFELKYWHA 303 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G+ +S V+VGR+ R TP++ +R++ ++ NP W IP I+ +D++ + ++D +YL N Sbjct: 304 GENVFQSKVVVGRISRPTPVMTTRLDSLIVNPTWNIPYKIMVEDILPMAKRDLRYLDRQN 363 Query: 271 IHMIDEKG--KEVFVEEVDWNSPE--PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 + ++ G + + +DW + + RQ G NA+ K +R ++HDT Sbjct: 364 LEILPRWGATQTLDPTSIDWENISLEAFPYRMRQRAGYHNALGLYKFNTPNRRAIFLHDT 423 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF R +SGC+RV + LL S+ + + + L + Sbjct: 424 PSKYLFERDSRAFSSGCIRVEHADQFANMLLTKQGLDSQQFAPQ--SSSVNQAIPLRQRI 481 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 PV +Y +AW + FR+DIY LD + Sbjct: 482 PVQIIYQTAWYDA-GQLHFREDIYRLDKLVTQ 512 >gi|241767412|ref|ZP_04765115.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax delafieldii 2AN] gi|241361827|gb|EER58083.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax delafieldii 2AN] Length = 322 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 94/310 (30%), Positives = 151/310 (48%), Gaps = 8/310 (2%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL +D +++ VK FQ RH L G++ TL+A+ VP R RQ+++ + R Sbjct: 1 DLPADARPPALYDEALQNGVKAFQERHALATDGVIGKGTLDALAVPPAARARQIELAMER 60 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVE--NGKVGLR--STVIVGRV-DRQTPILHSRINR 237 ++ + G R ++VNIP L A E NG+V L+ VIVG+ D +TP+ + Sbjct: 61 LRWTPLLR-GPRMIVVNIPEFVLRAYEVHNGQVSLQLAMKVIVGKALDTRTPLFDEDMRF 119 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD-WNSPEPPNF 296 I F+PYW +P SI + + + LR+DP Y + + G+ + ++ Sbjct: 120 IEFSPYWNVPPSIARSETIPRLRRDPGYFDQQGLEFVGANGQVHTALAAEHLDAVLRGQM 179 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG NA+ K F + +N Y+H TP P LF R + GCVRV + + L ++ Sbjct: 180 RIRQRPGPKNALGDIKFVFPNNSNIYLHHTPAPALFQRDRRDFSHGCVRVEDPVALAQFV 239 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 L++ P W I E + ++ ++LA +PV Y +A K F D+YG D + Sbjct: 240 LRNDPAWPEPRIREAMARGQSATLRLAEPLPVVIAYSTAIV-KQGKPHFFADLYGQDKLL 298 Query: 417 VGIIPLPEDH 426 + + Sbjct: 299 DQALRQQSER 308 >gi|269102554|ref|ZP_06155251.1| hypothetical amidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162452|gb|EEZ40948.1| hypothetical amidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 588 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 107/355 (30%), Positives = 170/355 (47%), Gaps = 20/355 (5%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 T +AIA +Q + G+ + + L GDLD + Sbjct: 218 NFEATMQAIAKFQALEPNPLKASYLPAVYRKGDRIPHGKAVARVLYDLGDLDQAN----- 272 Query: 134 FDAYVES-----------AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 +D + + A+K FQ R+GL G++ ST + + +P R+L +N+ R Sbjct: 273 YDKLMAAKSISNTGVMNDAIKHFQKRYGLSADGIIGKSTAQQLAIPYGELARRLALNMQR 332 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + ++LVNIP L+ ENGKV S VIVGR R T + S IN ++ NP Sbjct: 333 ANVIAPFAKDKAHILVNIPDYMLKVYENGKVVFDSKVIVGRESRPTNLFSSSINTMVVNP 392 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPPNFI--F 298 YW +P +I QKD++ +++P YL +NI +I+ E+ V ++W++ P +F F Sbjct: 393 YWNVPITIKQKDVIPKAKRNPGYLAAHNIKVINSWRDRTEIPVSSINWSAVNPKSFPHEF 452 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 +Q PG N++ K + ++HDTP LF+ R +SGCVRV DL ++L Sbjct: 453 QQGPGPHNSLGMVKFLMPNDYAIFLHDTPARGLFSKTKRDLSSGCVRVARAHDLADFVLD 512 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 S + + K + V L+ + V FVY++ W +D +Q R+DIY D Sbjct: 513 YQNRPSMRTFDSMRKDKGQDTVSLSRRIGVDFVYLTGWVNQDGQVQMREDIYNYD 567 >gi|260776045|ref|ZP_05884940.1| hypothetical protein VIC_001429 [Vibrio coralliilyticus ATCC BAA-450] gi|260607268|gb|EEX33533.1| hypothetical protein VIC_001429 [Vibrio coralliilyticus ATCC BAA-450] Length = 517 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 88/296 (29%), Positives = 150/296 (50%), Gaps = 9/296 (3%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL + +D +E+AVK FQ HGL G++ T+ +N+ R+ L +N R Sbjct: 221 DLSDVRRDVNWYDVTLETAVKQFQRLHGLTDDGIIGPDTIRWLNISPSERLSILALNAER 280 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + ++ ++VN+P ++ +G+ S V+VGR R TP++ ++++ ++ NP Sbjct: 281 GRLWPIER--DTIIVVNVPGFEMKYWYSGQEVFESKVVVGRKGRPTPMMTTKLDSLILNP 338 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR- 299 W +P I+ +D++ +++DP+YL NI ++ + G + + E++DW + P F +R Sbjct: 339 TWNVPWKIMVEDIIPKVKEDPEYLVRQNITIVPKWGSKELINPEDIDWQNMRPSAFPYRM 398 Query: 300 -QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q G NA+ K +R Y+HDTP LF+ R +SGC+RV + LL+ Sbjct: 399 TQLSGNNNALGLYKFNTPNRRAIYLHDTPSKNLFDEASRAFSSGCIRVEHADQFATRLLE 458 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 EE + + L VPVH +Y +AW + I +RDDIY D Sbjct: 459 SQGLDMSTLDEEELAA--NKSIPLKQRVPVHIIYQTAW-SEGGKIHYRDDIYRWDR 511 >gi|254710055|ref|ZP_05171866.1| hypothetical protein BpinB_07218 [Brucella pinnipedialis B2/94] gi|256031550|ref|ZP_05445164.1| hypothetical protein BpinM2_12995 [Brucella pinnipedialis M292/94/1] gi|261317602|ref|ZP_05956799.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|265988636|ref|ZP_06101193.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|261296825|gb|EEY00322.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|264660833|gb|EEZ31094.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] Length = 556 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 140 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 197 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 198 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 255 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 256 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 315 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 316 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 374 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 375 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 433 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 434 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 493 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 494 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 539 >gi|307318578|ref|ZP_07598012.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306895918|gb|EFN26670.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] Length = 631 Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 156/382 (40%), Gaps = 21/382 (5%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRL 114 + V ++S P ++ + + + + E+ P L G S+ + + Sbjct: 253 SSDVAALVESQNPKSAQ--FTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANV 310 Query: 115 RE--RLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +L S L + + + + V+ FQ +GL G+V +++ A+ Sbjct: 311 IAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRAL 370 Query: 166 NV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +I ++++ + + + L + +G RYV +N PA + E G V+VG Sbjct: 371 TGGDTTQGKIDKVEIAMEQARWLPDG-LGDRYVFINQPAFTASYTEQGTEQFSMRVVVGS 429 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 QT I + NPYW +P+SII +M+ LR DP YL + G+ V Sbjct: 430 KANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVG-GRVVPS 488 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 V+W RQ P NA+ KI F + + YMHDTP F R + GC Sbjct: 489 TAVNWYGSTNS-IAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGC 547 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 VR+ + + +L S + + + + ++ +VPV+ Y +AW KD + Sbjct: 548 VRLADPRRMAAAVL----GVSVDEVGMEISGGRNKALPVSAKVPVYVAYFTAWPNKDGTV 603 Query: 404 QFRDDIYGLDNVHVGIIPLPED 425 ++ DD+Y D Sbjct: 604 EYFDDVYERDMYMNRAFEATRK 625 >gi|154246011|ref|YP_001416969.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160096|gb|ABS67312.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 672 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 97/415 (23%), Positives = 163/415 (39%), Gaps = 36/415 (8%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYH-SIVNDRFD--NFLARVDMGIDSDIPIISKETI 75 +L + ++ + + + + P + Sbjct: 263 VLTYARHAQAGRFDPGRISALVTPVREIPDPTAVLAKVAYAPDANAALAAYNPTHA--GY 320 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + +A G +P + G S + LR RL ++G A+ Sbjct: 321 RALKAQLARVTG--QTPGVVAVPPGAQIRPGASDPRIPTLRTRLGVTG----RPADDNAY 374 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ----VNLMRIKKLLEQK 190 D + AVK FQ + P+G+V ST+ A+N L+ N+ R + L + Sbjct: 375 DPALVDAVKAFQEASKIKPTGIVGPSTIAALNAGATPGGGSLKSDVIANMERWRWLP-RD 433 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G YV+VNIP + ++G + V+VG+ + TP+L + I+ NP W IP SI Sbjct: 434 LGESYVMVNIPEFLVRIYQSGHEIHETRVVVGKPETPTPLLSREMQYIVVNPAWNIPPSI 493 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + +MM LLR DP L I ++ + FRQ P + NA+ Sbjct: 494 ARNEMMPLLRSDPSALSRRGIEVVRNG---------------SGGYSFRQVPSERNALGR 538 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYH 367 K F + ++ Y+HDTP LF N R + GCVRV + + W++ Sbjct: 539 IKFMFPNDHSVYLHDTPSKALFQNDRRAYSHGCVRVYEPLKFGEVIFNLGLPNDHWTQTR 598 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 I ++ + V L PVH VY + + R+D+YG++ ++ L Sbjct: 599 IGKMFGS-SERYVNLKQRFPVHIVYFNVVVDDAGRLAVREDLYGINAETKTLLGL 652 >gi|15965611|ref|NP_385964.1| hypothetical protein SMc00150 [Sinorhizobium meliloti 1021] gi|307302730|ref|ZP_07582486.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|15074792|emb|CAC46437.1| Putative membrane protein [Sinorhizobium meliloti 1021] gi|306903094|gb|EFN33685.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 631 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 156/382 (40%), Gaps = 21/382 (5%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRL 114 + V ++S P ++ + + + + E+ P L G S+ + + Sbjct: 253 SSDVAALVESQNPKSAQ--FTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANV 310 Query: 115 RE--RLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +L S L + + + + V+ FQ +GL G+V +++ A+ Sbjct: 311 IAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRAL 370 Query: 166 NV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +I ++++ + + + L + +G RYV +N PA + E G V+VG Sbjct: 371 TGGDTTQGKIDKVEIAMEQARWLPDG-LGDRYVFINQPAFTASYTEQGTEQFSMRVVVGS 429 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 QT I + NPYW +P+SII +M+ LR DP YL + G+ V Sbjct: 430 KANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVG-GRVVPS 488 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 V+W RQ P NA+ KI F + + YMHDTP F R + GC Sbjct: 489 TAVNWYGSTNS-IAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGC 547 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 VR+ + + +L S + + + + ++ +VPV+ Y +AW KD + Sbjct: 548 VRLADPRRMAAAVL----GVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTV 603 Query: 404 QFRDDIYGLDNVHVGIIPLPED 425 ++ DD+Y D Sbjct: 604 EYFDDVYERDMYMNRAFEATRK 625 >gi|261314301|ref|ZP_05953498.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261321811|ref|ZP_05961008.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261758157|ref|ZP_06001866.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] gi|261294501|gb|EEX97997.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261303327|gb|EEY06824.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261738141|gb|EEY26137.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] Length = 634 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 218 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 275 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 276 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 333 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 334 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 393 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 394 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 452 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 453 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 511 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 512 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 571 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 572 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|261222137|ref|ZP_05936418.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|260920721|gb|EEX87374.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] Length = 634 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 27/411 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 218 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 275 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 276 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 333 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ Sbjct: 334 AHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 393 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 394 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 452 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 453 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 511 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 512 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 571 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 572 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|254418463|ref|ZP_05032187.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] gi|196184640|gb|EDX79616.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] Length = 497 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 89/413 (21%), Positives = 165/413 (39%), Gaps = 37/413 (8%) Query: 20 LPMGLSLVEKPIHASVLD----EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET- 74 L + + + + +D E + E + V+ A D + + ++ + Sbjct: 89 LTQAVLTLAEALAHGRVDPASVETLWEMGRNQVDTPPLLATAVDDGTLAETMAGLAPQDR 148 Query: 75 -IAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSK---- 128 Y+ I RGGWP + S + L RL + GDL + Sbjct: 149 GYQGLCDGFLRYRAIADRGGWPPFALGATIEPFASDPRLPALLPRLRVEGDLTDAAAAMV 208 Query: 129 -GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + + ++ AV++FQ+RHGL+ + +T A+++ + R RQ+ +NL R + L Sbjct: 209 GPSGGDYGSVLQEAVRVFQVRHGLEADARIGPATQRALSISAEARARQIALNLERRRWL- 267 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++ + + VN A+ + ++G+ V+ G D TP L ++ NP W +P Sbjct: 268 KRDVAPERIEVNTAASIMVYWKDGRPVHSMRVVTGDADNATPSLERPFASVVANPPWTVP 327 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI Q++++ Y++ NN+ + + + Q G A Sbjct: 328 TSIAQREILPRGA---GYMRANNMTIQNG--------------------MVVQRAGPNAA 364 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K E ++HDTP F+ R + GCVRV++ + LL P Sbjct: 365 LGQVKFELQDSYAIFLHDTPSRGAFDQSFRHLSHGCVRVQDAVGFARLLLAPDP-ERLAR 423 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + + +T V + V +Y +A+ + FRDDIY D + Sbjct: 424 FDAALDSGQTVRVATGRPIDVRLLYWTAFLDGQGRVAFRDDIYRRDTRLAEAL 476 >gi|222148534|ref|YP_002549491.1| hypothetical protein Avi_2078 [Agrobacterium vitis S4] gi|221735520|gb|ACM36483.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 614 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 96/417 (23%), Positives = 171/417 (41%), Gaps = 26/417 (6%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVD--MGIDSDIPIISKETI 75 IL V + + + + + ++ D + D + P + Sbjct: 196 ILTYVQDTVRGRLDPNRISGYHDFKRKTVNLDPVLDLVRSSPDIAAYLHGRDPASPQ--F 253 Query: 76 AQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRLRERLIISG---------D 123 + +A ++ + L G S+ + + E + G Sbjct: 254 QALKAELAKLVAEANQQQSKPVKINLTGVLKPGGSNPELANIVEGIKTYGSDALKTEHAL 313 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-PVDLRIRQLQVNLMR 182 + + + + V+ +Q GL P G++ +T+ M +I +L V + + Sbjct: 314 TLTDYTGTPDYTPELVALVESYQKERGLKPDGVIGQATVRTMVGHSNAEKIEKLVVAMEQ 373 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L +G RYV +N PA + + + V+VG QT + I + FNP Sbjct: 374 LRWLPA-DLGPRYVFINQPAFEAYYFNDRQQQIAMKVVVGAPQHQTFFFQNMIQTVEFNP 432 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 YW +PRSII +M+ LRQDP YL + KG++V +VDW + + RQ P Sbjct: 433 YWGVPRSIIVNEMLPKLRQDPSYLDRLGYEV-SYKGRKVASSQVDWYTTS--DVDVRQPP 489 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 NA+ KI F + + YMHDTP F +R + GCVR+ + ++ T Sbjct: 490 SSDNALGDLKILFPNAHAIYMHDTPAKSFFKRDMRALSHGCVRLAEPRVMAAAVMGTTV- 548 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 I+ + + + V++ + PV+ Y +AW KD ++++ DD+YG D Sbjct: 549 ---EDIDAQIASGQNRAVQVPQKFPVYVAYFTAWPDKDGVVRYYDDVYGRDEATRKA 602 >gi|319783599|ref|YP_004143075.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169487|gb|ADV13025.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 629 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 168/379 (44%), Gaps = 20/379 (5%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL--- 114 +V ++S P + Q + P L G +S + +L Sbjct: 254 QVRTYLESRHPQ--NAEYQALRVELEALQASAENEIVVD-PKLLLKPGETSPELPKLLTL 310 Query: 115 -RERL-----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NV 167 L G++ S +D + +K Q + G+ G++ T+ ++ Sbjct: 311 IARNLDDEMGGAYGEVLSRLATSDVYDPELVPVIKAVQQKAGMKGDGVIGPRTVASLAGT 370 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ +++V L ++ L +G V +N PA + ++NG+ LR+ V+VGR Q Sbjct: 371 SKADKLLKVEVALEELRWLPS-DLGSPRVFINQPAFTASYIDNGEEKLRTRVVVGRTTNQ 429 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T + +I ++ F+PYW +P+SII +M+ LR DP YL + D +GK + V+ Sbjct: 430 TSFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRNDPGYLDRAGYEVTDSRGKRIPSSAVN 489 Query: 288 WNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 W + + RQ P + NA+ KI F +++ YMHDTP+ F +R + GCVR+ Sbjct: 490 WGAYGSNIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKSFFQRDMRALSHGCVRL 549 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 ++ + +L S +I E +K T + +PV+ Y +AW +++ Sbjct: 550 QDPRGMAAAVL----GTSVDYIAEKLKHGHATE-NVTRTIPVYVAYFTAWPDLSGKVEYF 604 Query: 407 DDIYGLDNVHVGIIPLPED 425 D+Y D+ + + E Sbjct: 605 GDVYDRDSRLKQALDVTEA 623 >gi|209884231|ref|YP_002288088.1| peptidoglycan-binding domain 1 [Oligotropha carboxidovorans OM5] gi|209872427|gb|ACI92223.1| peptidoglycan-binding domain 1 [Oligotropha carboxidovorans OM5] Length = 712 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 101/423 (23%), Positives = 168/423 (39%), Gaps = 45/423 (10%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYH-SIVNDRFDNFLA--RVDMGIDSDIPIISKETIA 76 L +H S + I H + N +++ P + Sbjct: 246 LDYARHAQSGRMHWSQVSGDIQYPDHTPDPTEILINISTARNAGAALETYNPPH--KAFQ 303 Query: 77 QTEKAIAFYQD-------ILSRGGWPELPIRPLHLG---NSSVSVQRLRERLIISGDLDP 126 Q + + I + + V LR +L I+ Sbjct: 304 QLRAKLTELRGDTDESHKIADGETLRFVKATKKNPNPTVMEDARVPALRAKLGIT----- 358 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKK 185 +DA V +AV+ FQ +GL +G++D TL A+N P + R I ++VN+ R + Sbjct: 359 ENASDTHYDATVATAVRKFQAANGLKATGVLDKQTLAALNGPKNDRKIDIVRVNMERWRW 418 Query: 186 LLEQK----MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMF 240 L +G YV++NIP SL+ + NG ++ V+VG+ TP L + I Sbjct: 419 LPRDLGAKALGDAYVVLNIPDYSLKLMHNGAPVWKTRVVVGKPGKHATPELTETMKYITV 478 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P SII + + L+QDP L+ + + + Q Sbjct: 479 NPTWNVPPSIIYNEYLPALQQDPTVLERMGLKLQRNPDGTI---------------RISQ 523 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK-- 358 PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 524 PPGERNALGRIRFNFPNKFLVYQHDTPDKHLFAKTERAFSHGCMRVQNPDQYAANLLSIA 583 Query: 359 -DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 ++ I + R + T +PV+ VY +A+ +++FR DIYG D + Sbjct: 584 LPKDHYTPEKIRG-MYGRSEININFPTPIPVNIVYHTAFVDDAGVLEFRKDIYGRDARMI 642 Query: 418 GII 420 ++ Sbjct: 643 SLL 645 >gi|39937248|ref|NP_949524.1| hypothetical protein RPA4188 [Rhodopseudomonas palustris CGA009] gi|39651106|emb|CAE29629.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 724 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 95/432 (21%), Positives = 171/432 (39%), Gaps = 41/432 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-ETIAQ 77 ++ +H S + I H I + + + + + Sbjct: 251 MMDYARQAQSGRMHWSQVSADIQYPEHPIDPAQVLAKVTTAADASAALDSYNPPHKLYRE 310 Query: 78 TEKAIAFYQDILSRGGWPELPIRPLH----------LGNSSVSVQRLRERLIISGDLDPS 127 +K +A + + L + V +LR RL ++ Sbjct: 311 LKKKLAELRGEGDKPVIKIADGETLRYQPARKKRAEVKMDDPRVPQLRARLGVT-----E 365 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKKL 186 S +DA V +AV+ FQ L SG++D T++A+N P R I + VN+ R + L Sbjct: 366 NPDSTTYDATVAAAVRKFQDHADLKASGVLDERTVKALNTPKRDRTIDTIIVNMERWRWL 425 Query: 187 LEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMFN 241 +G YV++NIP +L+ +++G + V+ G+ TP+L + I N Sbjct: 426 PRDLGAPSLGDAYVILNIPDYTLKVMQHGAEVWTTRVVTGKPGKHATPLLTETMKYITVN 485 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P SII + + L+QDP L + + + + Q Sbjct: 486 PTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRD---------------GSIHISQP 530 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK--- 358 PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 531 PGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDVYASTLLNIAM 590 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 ++ + + R +K T +PV+ Y +A+ +Q R D+YG D + Sbjct: 591 PEKDYTPAKV-RAMYGRSEVDLKFPTPIPVNITYQTAFVDDAGKLQLRKDVYGRDAAMLA 649 Query: 419 IIPLPEDHPIDS 430 ++ + +++ Sbjct: 650 LLKNEKGKNLEA 661 >gi|258620190|ref|ZP_05715229.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587548|gb|EEW12258.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 522 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 101/429 (23%), Positives = 183/429 (42%), Gaps = 27/429 (6%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASV------LDEIINESYHSIVNDRFDN 54 M Y + N+ Y + + + L + V + Sbjct: 91 MRTYRQQNQ-WYEYDLLATDTLLQYLSYAELAPKVGIPWFFEVALAKPLEAPSEEGLLAL 149 Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVS 110 +A +D + + A ++ + YQ +L+ ++P G+ Sbjct: 150 HIAVGSKTLDQLVDEYTPRDPAY-QQLLNTYQFLLATES-HDIPLYEQTGLKRPGDPLTH 207 Query: 111 VQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 L RL + +D + +K FQ HGL P G++ T++ +N V Sbjct: 208 RDALLRRLSLVNLDVTDVRDDITFYDQTLVKPIKQFQNMHGLKPDGVIGPETMKWLNKSV 267 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+VGRV R TP Sbjct: 268 TERLALLALNAERIRLWSTQQ--GTVIVVNVPGFEMKYWDAGREVFGAKVVVGRVTRPTP 325 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVD 287 +++++++ ++ NP W +PR I+ +D++ ++++D +YL + I +I + + + +D Sbjct: 326 VMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDSEYLARHQIEIIRSWSDPEVLDPQLID 385 Query: 288 WNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W+S P + RQ G NA+ K + Y+HDTP LFNNV R +SGC+R Sbjct: 386 WSSINPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNVSRAFSSGCIR 445 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V N LL+ T + L +PV +Y + W + +Q+ Sbjct: 446 VENAQKFAQTLLEQQGIVLNELPAY------TQAIALKKRIPVQIIYQTVWY-EGGALQY 498 Query: 406 RDDIYGLDN 414 RDDIY D+ Sbjct: 499 RDDIYRYDS 507 >gi|262171698|ref|ZP_06039376.1| hypothetical protein VII_002521 [Vibrio mimicus MB-451] gi|261892774|gb|EEY38760.1| hypothetical protein VII_002521 [Vibrio mimicus MB-451] Length = 522 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 101/429 (23%), Positives = 184/429 (42%), Gaps = 27/429 (6%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASV------LDEIINESYHSIVNDRFDN 54 M Y + N+ Y + + + L + V + Sbjct: 91 MRTYRQQNQ-WYEYDLLATDTLLQYLSYAELAPKVGIPWFFEVALAKPLEAPSEEGLLAL 149 Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVS 110 +A +D + + A ++ + YQ +L+ ++P G+ Sbjct: 150 HMAVGSKTLDQLVDEYTPRDPAY-QQLLNTYQFLLATES-HDIPLYEQTGLKRPGDPLTH 207 Query: 111 VQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 L RL + +D + +K FQ HGL P G++ T++ +N V Sbjct: 208 RDALLRRLSLVNLDVTDVRDDITFYDQTLVKPIKQFQNMHGLKPDGVIGPETMKWLNKSV 267 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 R+ L +N RI+ Q+ ++VN+P ++ ++G+ + V+VGRV R TP Sbjct: 268 TERLALLALNAERIRLWSTQQ--GTVIVVNVPGFEMKYWDSGREVFGAKVVVGRVTRPTP 325 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVD 287 +++++++ ++ NP W +PR I+ +D++ ++++D +YL + I +I + + + +D Sbjct: 326 VMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDSEYLARHQIEIIRSWSDPEVLDPQLID 385 Query: 288 WNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W+S P + RQ G NA+ K + Y+HDTP LFNNV R +SGC+R Sbjct: 386 WSSINPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNVSRAFSSGCIR 445 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V N LL+ T + L +PV +Y + W + +Q+ Sbjct: 446 VENAQKFAQTLLEQQGIVLNELPAY------TQAIALKKRIPVQIIYQTVWY-EGGALQY 498 Query: 406 RDDIYGLDN 414 RDDIY D+ Sbjct: 499 RDDIYRYDS 507 >gi|262165524|ref|ZP_06033261.1| hypothetical protein VMA_001971 [Vibrio mimicus VM223] gi|262025240|gb|EEY43908.1| hypothetical protein VMA_001971 [Vibrio mimicus VM223] Length = 522 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 100/426 (23%), Positives = 182/426 (42%), Gaps = 27/426 (6%) Query: 4 YLKINKILYCFFVYLILPMGLSLVEKPIHASV------LDEIINESYHSIVNDRFDNFLA 57 Y + N+ Y + + + L + V + +A Sbjct: 94 YRQQNQ-WYEYDLLATDTLLQYLSYAELAPKVGIPWFFEAALAKPLEAPSEEGLLALHMA 152 Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQR 113 +D + + A ++ + YQ +L+ ++P G+ Sbjct: 153 VGSKTLDQLVDEYTPRDPAY-QQLLNTYQFLLATES-HDIPLYEQTGLKRPGDPLTHRDA 210 Query: 114 LRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L RL + +D + +K FQ HGL P G++ T++ +N V R Sbjct: 211 LLRRLSLVNLDVTDVRDDITFYDQTLVKPIKQFQNMHGLKPDGVIGPETMKWLNKSVTER 270 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + L +N RI+ Q+ ++VN+P ++ + G+ + V+VGRV R TP+++ Sbjct: 271 LALLALNAERIRLWSTQQ--GTVIVVNVPGFEMKYWDAGREVFGAKVVVGRVTRPTPVMN 328 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNS 290 ++++ ++ NP W +PR I+ +D++ ++++D +YL + I +I + + + +DW+S Sbjct: 329 TKLDSLIINPTWNVPRKIMVEDILPMVKRDSEYLARHQIEIIRSWSDPEVLDPQLIDWSS 388 Query: 291 PEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 P + RQ G NA+ K + Y+HDTP LFNNV R +SGC+RV N Sbjct: 389 INPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNVSRAFSSGCIRVEN 448 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 LL+ T + L +PV +Y + W + +Q+RDD Sbjct: 449 AQKFAQTLLEQQGIVLNELPAY------TQAIALKKRIPVQIIYQTVWY-EGGALQYRDD 501 Query: 409 IYGLDN 414 IY D+ Sbjct: 502 IYRYDS 507 >gi|258624450|ref|ZP_05719397.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258583297|gb|EEW08099.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 522 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 95/383 (24%), Positives = 170/383 (44%), Gaps = 20/383 (5%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-- 98 +A +D + + A ++ + YQ +L+ ++P Sbjct: 136 KPLEAPSEEGLLALHIAVGSKTLDQLVDEYTPRDPAY-QQLLNTYQFLLATES-HDIPLY 193 Query: 99 --IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSG 155 G+ L RL + +D + +K FQ HGL P G Sbjct: 194 EQTGLKRPGDPLTHRDALLRRLSLVNLDVTDVRDDITFYDQTLVKPIKQFQSMHGLKPDG 253 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ Sbjct: 254 VIGPETMKWLNKSVTERLALLALNAERIRLWSTQQ--GTVIVVNVPGFEMKYWDAGREVF 311 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 + V+VGRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D +YL + I +I Sbjct: 312 GAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDSEYLARHQIEIIR 371 Query: 276 EKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + + + +DW+S P + RQ G NA+ K + Y+HDTP L Sbjct: 372 SWSDPEVLDPQLIDWSSINPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHL 431 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 FNNV R +SGC+RV N LL+ T + L +PV + Sbjct: 432 FNNVSRAFSSGCIRVENAQKFAQTLLEQQGIVLNELPAY------TQAIALKKRIPVQII 485 Query: 392 YISAWSPKDSIIQFRDDIYGLDN 414 Y + W + +Q+RDDIY D+ Sbjct: 486 YQTVWY-EGGALQYRDDIYRYDS 507 >gi|192293029|ref|YP_001993634.1| peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] gi|192286778|gb|ACF03159.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] Length = 724 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 96/432 (22%), Positives = 172/432 (39%), Gaps = 41/432 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-ETIAQ 77 ++ +H S + I H I + + + + + Sbjct: 251 MMDYARQAQSGRMHWSQVSADIQYPEHPIDPAQVLAKVTTAADASAALDSYNPPHKLYRE 310 Query: 78 TEKAIAFYQDILSRGGWPELPIRPLH----------LGNSSVSVQRLRERLIISGDLDPS 127 +K +A + + L + V +LR RL ++ Sbjct: 311 LKKKLAELRGEGDKPVIKIADGETLRYQPARKKRAEVKMDDPRVPQLRARLGVT-----E 365 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKKL 186 S +DA V +AV+ FQ L SG++D T++A+N P R I + VN+ R + L Sbjct: 366 NPDSTTYDATVAAAVRKFQDHADLKASGVLDERTVKALNTPKRDRTIDTIIVNMERWRWL 425 Query: 187 LEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMFN 241 +G YV++NIP +L+ +++G + V+ G+ TP+L + I N Sbjct: 426 PRDLGAPSLGDAYVILNIPDYTLKVMQHGAEVWTTRVVTGKPGKHATPLLTETMKYITVN 485 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P SII + + L+QDP L + + + + Q Sbjct: 486 PTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRD---------------GSIHISQP 530 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK--- 358 PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 531 PGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDVYASTLLNIAM 590 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 ++ + + R +K T +PV+ Y +A+ +Q R D+YG D +G Sbjct: 591 PEKDYTPAKV-RAMYGRSEVDLKFPTPIPVNITYQTAFVDDAGKLQLRKDVYGRDAAMLG 649 Query: 419 IIPLPEDHPIDS 430 ++ + +++ Sbjct: 650 LLKNDKGKNLEA 661 >gi|118589141|ref|ZP_01546548.1| hypothetical protein SIAM614_13853 [Stappia aggregata IAM 12614] gi|118438470|gb|EAV45104.1| hypothetical protein SIAM614_13853 [Stappia aggregata IAM 12614] Length = 656 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 92/422 (21%), Positives = 180/422 (42%), Gaps = 21/422 (4%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IA 76 +L L + + + E ++ V+ + +++++ + ++ Sbjct: 233 VLTYVLDSRRGRVDPNRISEY-HDLPRHAVDLVSALEGFKNASDVEAEVANVQPQSDHFR 291 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG---------DLDP 126 + + +A + + L G SS ++ + + +G + Sbjct: 292 KLTEELARLKAEDEDADQIVIAPDTFLKAGKSSPEMKNIVAAINKNGSEELKTAHAETLT 351 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKK 185 + + + + VK FQ L P G++ +T+ AM +I ++++ + R + Sbjct: 352 AYDGAELYSPELVELVKAFQKEAKLTPDGIIGKNTINAMVGETNAAKIAKVELAMERSRW 411 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L EQ +G R V +N A + G+ L V+VG+ QT + +I + +NPYW Sbjct: 412 LPEQ-LGERKVFINQAAFTATYTAPGEDPLSMRVVVGKKSNQTNFFYDKIQIVEYNPYWG 470 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPG 303 +P SII +M+ L +DP YL + G+++ VDW + RQ PG Sbjct: 471 VPYSIIVNEMLPKLAKDPSYLDRAGYEVTTPGGRQISSSAVDWYAVASKQQSVNVRQYPG 530 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ KI F ++++ YMHDTP LF +R + GC+R+++ + +L Sbjct: 531 SSNALGEVKILFPNKHHIYMHDTPAKSLFKKDMRAYSHGCIRLQDPKAMAAAVL----GK 586 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 S+ ++ + + ++ ++PV+ Y +AW +D I F D+Y D + I Sbjct: 587 SKDYVSSRISGGQNEQERVTGDIPVYVSYFTAWPEQDGTIGFYTDVYDRDMHLLEAIEKT 646 Query: 424 ED 425 E Sbjct: 647 EA 648 >gi|115526100|ref|YP_783011.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520047|gb|ABJ08031.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris BisA53] Length = 705 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 100/433 (23%), Positives = 171/433 (39%), Gaps = 45/433 (10%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS--IVNDRFDNFLA-RVDMGIDSDIPIISKETI 75 +L +H S + I H + A + P + Sbjct: 233 MLDYARQAQSGRMHWSQVSSDILYPEHPIDPAEVLANVTNAKDPSAALAGYNPPH--KLY 290 Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLD 125 + + +A + I +P R + V +LR +L I+ Sbjct: 291 RELKAKLAELRGQGDGPVVTIAEGPALKYVPARKKQAAIEVDDPRVPQLRAKLGIT---- 346 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIK 184 S +DA V +AV+ FQ + +G++D T++A+N P R I + VN+ R + Sbjct: 347 -ENADSTKYDAKVAAAVRKFQDATDIPVTGVLDDRTVKALNSPKRDRQIDIVVVNMERWR 405 Query: 185 KLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIM 239 L Q +G YV++N+P +L+ ++N + V+ G+ TP+L + I Sbjct: 406 WLPRQLGASSLGNAYVILNVPDFTLKVMQNDAAVWTTRVVTGKPGKHATPMLTETMKYIT 465 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +P SII + + L+QDP L + + + + Sbjct: 466 VNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRD---------------GSIHIS 510 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK- 358 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 511 QPPGERNALGRIRFNFPNKFLVYQHDTPDKHLFARDERAFSHGCMRVQNPDQYAATLLNI 570 Query: 359 --DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 +S I + R +K T +PV+ Y +A+ +Q R DIYG D Sbjct: 571 TMPNERYSPERIRG-MYGRSEIDLKFPTPIPVNITYQTAFVDDSGKLQIRKDIYGRDAAM 629 Query: 417 VGIIPLPEDHPID 429 +G++ ++ Sbjct: 630 IGLLRNSRGKDLE 642 >gi|312883636|ref|ZP_07743361.1| hypothetical protein VIBC2010_12494 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368859|gb|EFP96386.1| hypothetical protein VIBC2010_12494 [Vibrio caribbenthicus ATCC BAA-2122] Length = 517 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 162/315 (51%), Gaps = 10/315 (3%) Query: 105 GNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L RL + G D+ + +DA +E A+K FQ HG++ G++ T++ Sbjct: 202 GDRLENRAILLRRLEMVGIDIHRVRKDVTWYDASLEDAIKQFQSLHGIEVDGVIGPVTIK 261 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N+ V+ R+ L +N RI+ +Q+ + ++VN+P+ L+ G+ S V+VGR Sbjct: 262 WLNLSVNKRLSILAINAERIRYWPDQR--EQLIVVNVPSFHLKYWRLGETVFESKVVVGR 319 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--V 281 R TP++ ++++ ++ NP W +P I+ +D++ +++D YL +NI ++ + G + Sbjct: 320 RGRPTPVMTTKLHSLILNPTWNVPWRIMVEDIIPKVKKDKNYLVRHNIKIVPKWGASDFI 379 Query: 282 FVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 E +DW+ +P + Q G NA+ K +R Y+HDTP LF+ R Sbjct: 380 NPESIDWDRLKPSRFPYQMTQMSGDKNALGLFKFNTPNRRAIYLHDTPVKSLFDETQRAF 439 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+R+ + LL+ E + + L + +PVH +Y +AW + Sbjct: 440 SSGCIRIEHADLFADLLLESEGLVIEEEDNEPL--GSNQSIPLKSRIPVHIIYQTAWY-E 496 Query: 400 DSIIQFRDDIYGLDN 414 + +R+DIY +D Sbjct: 497 GGNVHYREDIYRMDR 511 >gi|218530929|ref|YP_002421745.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218523232|gb|ACK83817.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 648 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 97/415 (23%), Positives = 168/415 (40%), Gaps = 45/415 (10%) Query: 22 MGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMG---IDSDIPIISKETIAQ 77 ++ S + +I + A + S P + Sbjct: 198 YARDARSGRVNPSAISRLITPTLDLPPADTVLTRLAASGAGAGDVLQSYNPR--QPGYLA 255 Query: 78 TEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERL----IISGDLDPSKGLS 131 +K +A + ++G +LP P L LG S V LR R +G LD + G + Sbjct: 256 LKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEA 315 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR----IRQLQVNLMRIKKLL 187 A+D V AVK FQ GL +G + +T+ A+ + + VN+ R + L Sbjct: 316 DAYDRAVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMERWRWLP 375 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G YV VN+P L+ +G+V + VIVG+ TP + + NP W +P Sbjct: 376 PE-LGPNYVFVNVPEFKLKVFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVP 434 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI+++ + + + ++ G RQ PG+ NA Sbjct: 435 PSILKQMLASG--------RTAGFEVVRRGGNI----------------SLRQPPGERNA 470 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F +++ Y+HDTP LF+ R + GCVRV + +L P+W++ Sbjct: 471 LGFIKFMFPNQHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PSWTQER 527 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +++++ ++L ++PVH Y +A + D+YG D + L Sbjct: 528 LKKLIGKG-ERTLRLPEKLPVHLAYFTAEVDDLGSYRTLPDLYGYDGPMKVALGL 581 >gi|302382528|ref|YP_003818351.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] gi|302193156|gb|ADL00728.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] Length = 521 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 155/363 (42%), Gaps = 31/363 (8%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKG---- 129 + Y+ I+ GGWP + G+S V + RL+ GD+ + G Sbjct: 173 YSNLSAGYVRYRRIIRNGGWPRFRAGASIEPGSSDTRVPIIITRLVAEGDMSEADGARLT 232 Query: 130 -LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + + +E+AV+ FQ RHGL P G + + T ++ + R RQ+ +NL R + L Sbjct: 233 AQGLVYGPELETAVRSFQARHGLAPDGRIGAGTQSSLGASAEDRARQIALNLERRRWLKR 292 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + R + VN AA + ++G+ + V+ G QTP L ++ NP W +P Sbjct: 293 ELSPER-IEVNTAAAIMVYWKDGRPVHSNRVVCGAPATQTPSLEKPFASVVANPPWYVPA 351 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I +++++ + P YL N+++ + Q G A+ Sbjct: 352 GIARREILP---RGPAYLASQNMYVQNGT--------------------VIQRAGPTAAL 388 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K E ++HDTP FN R + GCVRV+N ++ LL PT Sbjct: 389 GYVKFELRDSYAIFLHDTPSKAAFNLSTRQRSHGCVRVQNAVEFARILLSPDPTL-LSQF 447 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 + +TR+T ++ E+ V +Y +A+ + FR+DIY D V + + P Sbjct: 448 DTAQQTRETKRIQTGREISVRLLYWTAFVDGQGRVAFREDIYRRDQVLAEALGIAVSLPT 507 Query: 429 DSD 431 D Sbjct: 508 VVD 510 >gi|300024143|ref|YP_003756754.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525964|gb|ADJ24433.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 654 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 163/377 (43%), Gaps = 17/377 (4%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQ 112 + S P + + + + G +P + G S + Sbjct: 220 ATATDKGAYLKSLQPKHKQ--FELLRQKLLALRS-GGNGETINIPGGANIAPGKRSPQIA 276 Query: 113 RLRERLIISGDLDPSKGLSV------AFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAM 165 +R+ L ++ P G +D + AVK +++ G+ P+ + ++ ++ Sbjct: 277 LIRKALKVT---PPQAGPDGKPFDETFYDDDLARAVKAYKVEKGIDPPTPTITTALRRSL 333 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 N + +L N+ + + +G YV VNIP + V++G+V ++ G V+ Sbjct: 334 NGDDGISEAKLLANMEEWRWMP-DDLGDFYVTVNIPDFKVRVVKDGEVVFDERIVTGSVN 392 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 RQTP+ + I+F P W +P SI K+++ LR L+ + +++ G+ + Sbjct: 393 RQTPVFSDMMRTIVFQPRWNVPDSIKVKELLPGLRAGGDPLRRQGL-VMERNGRRISATS 451 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 ++W + NF Q P NA+ K F + + Y+HDTP LFN +R + GC+R Sbjct: 452 INWYRSDIRNFHVYQPPSGGNALGVVKFLFPNAHAVYLHDTPSKGLFNESIRAFSHGCMR 511 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 VRN + L +L W + + +++K + + L +PVH Y +A + D I+ Sbjct: 512 VRNPVQLAEVVLAQDKGWDKIAVNDLLKNGPEENEIALDRPIPVHITYFTARAGDDGAIE 571 Query: 405 FRDDIYGLDNVHVGIIP 421 DIYG + + Sbjct: 572 SFGDIYGHEKRITLALA 588 >gi|260459428|ref|ZP_05807683.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259034982|gb|EEW36238.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 628 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 88/420 (20%), Positives = 172/420 (40%), Gaps = 21/420 (5%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IA 76 +L I + + + + + + + + + Sbjct: 211 VLRYAHDAQSGRIEPNRMTGYYDFPAKPL-DLVGVLKTLAHTQEVRTYLESRHPQNPEYQ 269 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL----RERL-----IISGDLDPS 127 + Q + P L G++S + +L L G++ Sbjct: 270 ALRVELESLQASAENEIVVD-PKLLLKPGDTSPELPKLLTLIARNLDDEMGGAYGEMLSR 328 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKL 186 S + + +K Q + G+ G++ T+ + R+ ++QV L ++ L Sbjct: 329 LATSEVYVPELIPLIKAVQQKEGMKGDGVIGPRTVALLAGTSKADRLLKVQVALEELRWL 388 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +G V +N PA + +++G+ L++ ++GR QT + +I ++ F+PYW + Sbjct: 389 PS-DLGSPRVFINQPAFTASYIDDGQEKLKTRAVIGRTTNQTAFFYDQIKQVDFHPYWGV 447 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP-NFIFRQDPGKI 305 P+SII +M+ LR DP YL + D +GK + V+W + RQ P + Sbjct: 448 PQSIIVNEMLPRLRNDPGYLDRAGYEVTDSRGKRIPSSAVNWGGYGANIPYSVRQQPSEA 507 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA+ KI F +++ YMHDTP+ F +R + GCVR+++ + +L S Sbjct: 508 NALGELKILFPNKHAIYMHDTPQKSFFKQDMRALSHGCVRLQDPRGMAAAVLDT----SV 563 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPED 425 +I E +K +T + ++PV+ Y +AW +++ D+Y D+ + E Sbjct: 564 DYIAEKLKHGHSTQ-DVTRKIPVYVAYFTAWPDMSGKVEYFGDVYDRDSRLKQAMDATEA 622 >gi|316935702|ref|YP_004110684.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315603416|gb|ADU45951.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 743 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 100/432 (23%), Positives = 175/432 (40%), Gaps = 41/432 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-ETIAQ 77 ++ +H S + I H I + + + + + Sbjct: 270 MMDYARQAQSGRMHWSQVSADIQYPEHPIDPAQVLATVTTAADASAALDSYNPPHKLYRE 329 Query: 78 TEKAIAFYQDILSRGGWPELPIRPLH---LGNS-------SVSVQRLRERLIISGDLDPS 127 +K +A + + L G V +LR RL ++ Sbjct: 330 LKKKLAELRGESDKPAIKIAEGETLRYQPAGKKRAEVKIDDPRVPQLRARLGVT-----E 384 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKKL 186 S +DA V +AV+ FQ L +G++D T++A+N P R I + VN+ R + L Sbjct: 385 NTDSATYDAAVAAAVRKFQHSADLKATGVLDDRTVKALNTPKRDRTIDTILVNMERWRWL 444 Query: 187 LEQK----MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMFN 241 Q + YV++N+P +L+ ++NG+ + V+VG+ TP+L + I N Sbjct: 445 PRQLGAPALDDAYVILNVPDYTLKLMQNGEQVWSTRVVVGKPGKHATPLLTETMKYITVN 504 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P SII + + L+QDP L + + + + Q Sbjct: 505 PTWNVPPSIINNEYLPALQQDPTVLDRMGLKLSRNRD---------------GSIHISQP 549 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK--- 358 PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 550 PGEANALGRIRFNFPNKFLVYQHDTPDKNLFGRDERAFSHGCMRVQNPDQYAAALLNIAM 609 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 ++ I + R +K AT +PV+ Y +A+ D +Q R DIYG D + Sbjct: 610 PDKNYTPARIRS-MYGRSEVDLKFATPIPVNITYQTAFVDDDGKLQLRKDIYGRDAAMLA 668 Query: 419 IIPLPEDHPIDS 430 ++ + +++ Sbjct: 669 LLKNGKGKNLEA 680 >gi|299132062|ref|ZP_07025257.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298592199|gb|EFI52399.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 710 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 98/435 (22%), Positives = 173/435 (39%), Gaps = 47/435 (10%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYH--SIVNDRFDNFLAR-VDMGIDSDIPIISKETI 75 +L +H S + I H + AR +++ P + Sbjct: 244 VLDYARHAQSGRMHWSQVSGDIQYPEHYPDPTEVLINVSTARNAGAALETYNPPH--KLY 301 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLG-----------NSSVSVQRLRERLIISGDL 124 + + +A + G L V LR +L ++ Sbjct: 302 KELKAKLAELRGKTDEGK-KIADGETLRFVKPTKKNPNPTVMDDARVPALRAKLGVT--- 357 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRI 183 +DA V +AV+ FQ + L +G++D+ T+ A+N P + R I ++VN+ R Sbjct: 358 --ENASDTHYDATVAAAVRKFQSANDLKATGVLDNHTVAALNGPRNDRKIDIIRVNMERW 415 Query: 184 KKLLEQK----MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRI 238 + L +G YV++NIP SL+ + NG ++ V+VG+ TP+L + I Sbjct: 416 RWLPRDLGAPALGDAYVILNIPDYSLQLMHNGATAWKTRVVVGKPGKHATPLLTETMKYI 475 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 NP W +P SII + + L+QDP L+ + + + Sbjct: 476 TVNPTWNVPPSIIYNEYLPALQQDPTVLERMGLKLQRNPDGTI---------------RI 520 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N +L Sbjct: 521 SQPPGEANALGRIRFNFPNKFLVYQHDTPDKYLFAKSERAFSHGCMRVQNPDQYAATILG 580 Query: 359 ---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ I + + L T +PV+ Y +A+ ++FR DIYG D Sbjct: 581 IALPKDHYTPEKIRS-MYGHNEININLPTPLPVNITYQTAFVDDAGKLEFRKDIYGRDAT 639 Query: 416 HVGIIPLPEDHPIDS 430 + ++ +++ Sbjct: 640 MIKLLKEGGRRNLET 654 >gi|54309189|ref|YP_130209.1| amidase [Photobacterium profundum SS9] gi|46913621|emb|CAG20407.1| hypothetical amidase [Photobacterium profundum SS9] Length = 578 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 99/359 (27%), Positives = 172/359 (47%), Gaps = 19/359 (5%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS-----KGLSVAFDA 136 I Q + + G++ V+ + L + L D+ + + ++ Sbjct: 219 IERLQQLPPHSLTRSDLKGLIRKGDAIVAGKELAKVLFDLNDMTEAEYTFITQMPTITNS 278 Query: 137 -YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + A+K FQ R+GL G++ ++T + +P R++ VN+ R + + + Sbjct: 279 GTMLEAIKRFQRRNGLADDGIIGAATTAQLVMPYTDIARRVAVNIQRFRNINVID-NQPH 337 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNIP L+ E G V S VIVGR R T + S IN ++ NP W +P +I +KD+ Sbjct: 338 IWVNIPDYMLKIFEQGNVIFESKVIVGRTSRPTNLFSSAINTMVVNPTWNVPETIKRKDV 397 Query: 256 MALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMAST 311 + ++ YL +N+ +++ E+ +++DW+S P F F+Q PG N++ Sbjct: 398 IPKVKHSRDYLTAHNMRILNSWRDRTEIPADQIDWSSVNPKTFPHEFQQGPGPSNSLGRV 457 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K + + Y+HDTP LFN R +SGCVRV DL +++ + + Sbjct: 458 KFLMPNDYSIYLHDTPARGLFNKTKRNLSSGCVRVEKAYDLANFIIDFQKRKNIESFNAM 517 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDS 430 +K V+L+ + V FVY++AW + + +Q R+DIYG D+ P+ IDS Sbjct: 518 LKDGDLDTVRLSQRLGVDFVYLTAWIDEKNTLQMREDIYGYDS--------PQKEAIDS 568 >gi|27382242|ref|NP_773771.1| hypothetical protein blr7131 [Bradyrhizobium japonicum USDA 110] gi|27355413|dbj|BAC52396.1| blr7131 [Bradyrhizobium japonicum USDA 110] Length = 735 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 93/428 (21%), Positives = 169/428 (39%), Gaps = 41/428 (9%) Query: 22 MGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 +H S + I H ++ D D ++ + + Sbjct: 267 YARQAQSGRMHWSQVSADILYPEHPVDPSEVLAKVTTAADASAALDSYNPPQKLYKELKA 326 Query: 81 AIAFYQ--------DILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +A + +I P + V +LR +L I+ Sbjct: 327 KLAELRGQGSGPVIEIADGPALKYTPAGKKQAEIVVEDPRVPQLRAKLGIT-----ENAS 381 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKKLLEQ 189 +DA V AV+ FQ + +G++D T++A+N P + I + VN+ R + L Sbjct: 382 DTRYDAAVAEAVRKFQNGAEIKATGILDDKTVKALNTPKRDKQIDTVLVNMERWRWLPRD 441 Query: 190 ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMFNPYW 244 +G YV++NIP +L+ ++ G+ + V+ G+ TP+L + I NP W Sbjct: 442 LGVPSLGDAYVILNIPDYTLKVMQRGQPVWTTRVVTGKPGQHATPLLTETMKYITVNPTW 501 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P SI+ + + L+QDP L+ + + + V Q PG+ Sbjct: 502 NVPPSIVYNEYLPALQQDPTVLQRMGLKLEQNRDGSV---------------HISQPPGE 546 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK---DTP 361 NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 547 ANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGCMRVQNPDQYASVLLNIAMPNE 606 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 ++ + + + +K T +PV+ Y +A+ +QFR D+YG D+ + I+ Sbjct: 607 KYTPERVRS-MYGKSEIDLKFPTPIPVNITYQTAFVDDAGKLQFRKDVYGRDSTMINILK 665 Query: 422 LPEDHPID 429 ++ Sbjct: 666 NSRGKDLE 673 >gi|254561917|ref|YP_003069012.1| hypothetical protein METDI3518 [Methylobacterium extorquens DM4] gi|254269195|emb|CAX25161.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 646 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 96/415 (23%), Positives = 168/415 (40%), Gaps = 45/415 (10%) Query: 22 MGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMG---IDSDIPIISKETIAQ 77 ++ + + +I + A + S P + Sbjct: 196 YARDARGGRVNPAAISRLITPTLDLPPADTVLTRLAASGSGAGDVLQSYNPR--QPGYLA 253 Query: 78 TEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERL----IISGDLDPSKGLS 131 +K +A + ++G +LP P L LG S V LR R +G LD + G + Sbjct: 254 LKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEA 313 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR----IRQLQVNLMRIKKLL 187 A+D V AVK FQ GL +G + +T+ A+ + + VN+ R + L Sbjct: 314 DAYDRAVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMERWRWLP 373 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G YV VN+P L+ +G+V + VIVG+ TP + + NP W +P Sbjct: 374 PE-LGPNYVFVNVPEFKLKVFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVP 432 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI+++ + + + ++ G RQ PG+ NA Sbjct: 433 PSILKQMLASG--------RTAGFEVVRRGGNI----------------SLRQPPGERNA 468 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F +++ Y+HDTP LF+ R + GCVRV + +L P+W++ Sbjct: 469 LGFIKFMFPNQHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PSWTQER 525 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +++++ ++L ++PVH Y +A + D+YG D + L Sbjct: 526 LKKLIGKG-ERTLRLPEKLPVHLAYFTAEVDDLGSYRTLPDLYGYDGPMKVALGL 579 >gi|13470744|ref|NP_102313.1| hypothetical protein mll0533 [Mesorhizobium loti MAFF303099] gi|14021487|dbj|BAB48099.1| mll0533 [Mesorhizobium loti MAFF303099] Length = 626 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 168/379 (44%), Gaps = 20/379 (5%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 V ++S P + Q + P L G +S + +L Sbjct: 251 EVRTYLESRHPQ--NAEYQALRVELEALQASAENEIVVD-PKLLLKPGETSPELPKLLSL 307 Query: 118 LII---------SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NV 167 + G+L S + + +K Q++ G+ G++ T+ + Sbjct: 308 IARNLDDNMGGTYGELLSRLASSEVYVPELVPLIKAVQVKEGMKGDGVIGPRTVALLAGT 367 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 R+ ++QV L ++ L +G V +N PA + ++NG+ L++ V+VGRV Q Sbjct: 368 SKADRLLKVQVALEELRWLPS-DLGSPRVFINQPAFTASYIDNGEEKLKTRVVVGRVTNQ 426 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T + +I ++ F+PYW +P+SII +M+ LR DP YL + D +GK + V+ Sbjct: 427 TAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRSDPGYLDRAGYEVTDSRGKRIPSSAVN 486 Query: 288 WNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 W + + RQ P + NA+ KI F +++ YMHDTP+ F +R + GCVR+ Sbjct: 487 WGAYGANIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKSFFKQDMRALSHGCVRL 546 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 ++ + +L S ++ E +K +T + ++PV+ Y +AW +++ Sbjct: 547 QDPRGMAAAVL----GTSVDYVAEKLKHGHSTE-DVTRKIPVYVAYFTAWPDMSGKVEYF 601 Query: 407 DDIYGLDNVHVGIIPLPED 425 D+Y D+ + E Sbjct: 602 SDVYDRDSRLKQALDATEA 620 >gi|304392206|ref|ZP_07374148.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303296435|gb|EFL90793.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 694 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 162/383 (42%), Gaps = 23/383 (6%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLGNSSVS 110 A + S P + ++ +A ++ G + I+ + G ++ Sbjct: 306 AEEAAPATVLASAHPA--DASYTALKRELATL--LIEAGDVKIITIKSGTFIRPGGTNDQ 361 Query: 111 VQRLRERL---------IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 V + E + + D + V+ FQ + GL P G+V +T Sbjct: 362 VASIVEAISLKMSAEERAEAFDALMMDYSDGVYIEEAVELVRAFQKKSGLKPDGIVGKNT 421 Query: 162 LEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 L + +I ++++ + R++ +G R+V +N PA + GK + + Sbjct: 422 LARLKFDSPKTKIDKVRLAMERLRWHP-DSLGSRHVFINQPAYRATLMNGGKPQISMRAV 480 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ QT H I + FNPYW IPRSI+ +M+ LR++P + + + + G+ Sbjct: 481 VGKPQHQTNFFHDEIEYVEFNPYWGIPRSILVNEMLPKLRRNPSHFDNLGYEVTTQGGRR 540 Query: 281 VFVEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + VDW S + RQ PG NA+ KI F +++ YMHDTP LF R Sbjct: 541 ISSSSVDWWSVGSNFPYNVRQPPGPKNALGELKIMFPNKHAIYMHDTPAKSLFKREKRAY 600 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 + GCVR+ + + +L + + R+ +L T++PV Y +AW Sbjct: 601 SHGCVRLADPRAMAAAVL----GTRVDDVSAEIFDRQNKTRRLKTKLPVFVSYFTAWPTA 656 Query: 400 DSIIQFRDDIYGLDNVHVGIIPL 422 D +++ D+Y D + + + Sbjct: 657 DGKVEYFGDVYQRDTALLKAMSM 679 >gi|157961829|ref|YP_001501863.1| peptidoglycan-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846829|gb|ABV87328.1| Peptidoglycan-binding domain 1 protein [Shewanella pealeana ATCC 700345] Length = 434 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 100/399 (25%), Positives = 178/399 (44%), Gaps = 15/399 (3%) Query: 21 PMGLSLVEKPIHASVLDEIINE-----SYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + + L V+D + + F + + + + +I ++ I Sbjct: 38 SVAMQLSSLAFDLGVIDSAAESTNTVGLVKLLNKELFQVEFTSLSLSTEQYLKLIKRKDI 97 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSV 132 A + I Y+ + R WP + L LG V +LR L+ GD++P + Sbjct: 98 ASYRRLIKQYKAL-DRFQWPMINPIELRLGLRVKEVAKLRWVLVKLGDMEPHTIAAYRES 156 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D VE+ +K FQ+RHGL G + + TL ++N R+ QLQ L L + Sbjct: 157 IYDPSVEAGLKRFQIRHGLSVDGKLGNQTLLSINTKPSFRVVQLQKAL--KLSLKKFDEE 214 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 YV VN+ +L +NG L+ VIVG+ +TP L++ ++ + NP W P SII Sbjct: 215 QEYVFVNLTDYTLRISKNGVEQLKMPVIVGKPSSKTPELNTVVSVVTINPTWTPPASIIY 274 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP----EPPNFIFRQDPGKINAM 308 +D+M + + P YL++NN + K ++ + Q G NA+ Sbjct: 275 QDIMKSVDEHPNYLRNNNFVLKSYKTGIEDSNLAGMDTAILKHKLKTSTLVQRSGDKNAL 334 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + + + ++HDTP LF R + GC+R+ +L+ P +++ Sbjct: 335 GKFRFTIPNTSAIFLHDTPNKYLFKRANRALSHGCIRLSEPERFAHYLISKEPLQTQHLF 394 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 ++ +KT KT +L + +P++ +Y + W KD +Q R+ Sbjct: 395 QKALKTNKTMHFRLRSRLPINIIYQNVWIDKDGRLQIRE 433 >gi|306843862|ref|ZP_07476457.1| cell wall degradation protein [Brucella sp. BO1] gi|306275617|gb|EFM57341.1| cell wall degradation protein [Brucella sp. BO1] Length = 681 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 96/406 (23%), Positives = 168/406 (41%), Gaps = 27/406 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 250 LRYAIDAGEGRIIADRLSGFHDLPRMRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 307 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 308 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 365 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 366 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 425 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP W Sbjct: 426 LP-HDFGKRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWG 484 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPG 303 +PRSII +M+ + +D YL N + GK+V V+W++ RQ P Sbjct: 485 VPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQKPS 543 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 544 LDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKN 603 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 + + +K+ VPV+ Y +AW D I + DI Sbjct: 604 LDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDI 644 >gi|308049138|ref|YP_003912704.1| peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] gi|307631328|gb|ADN75630.1| Peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] Length = 492 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 167/398 (41%), Gaps = 16/398 (4%) Query: 33 ASVLDEIINESYHSIVNDRF------DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 LD +N + F D R+ + + P + + Sbjct: 93 PGQLD--LNAPLSLMPEPGFASAMAHDAAKGRLYERVLALEPPVP--HYLAFSNRLRKLH 148 Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + + + G V +R +L GD S+ +D + +AV+ FQ Sbjct: 149 HLARQPPLAIGAWGVIKPGEHHAEVAPIRRQLARLGDYPGR-TDSLRYDGGMVAAVQQFQ 207 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 RHGL G++ T + + R R L L+R ++LVNIP L+ Sbjct: 208 RRHGLKADGVIGPRTRHWLRLDYQERARLLARALVRQA-HDRHYFAPDHLLVNIPDYRLD 266 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 V++G+ + V+VG R+TP +HS + ++ NPYW +P SI++KD++ + D Y+ Sbjct: 267 WVQDGQSRFSARVVVGMPSRRTPRMHSELRSVVVNPYWNVPNSIMRKDLLPRILTDGSYV 326 Query: 267 KDNNIHMIDEKGKEV--FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + N ++D + + + +E+ + + + RQ PG N++ K + Y+H Sbjct: 327 QRNRFEVLDSENRPLWLSPDELSRLAYQGFPYRLRQRPGPGNSLGRYKFHLINSQAIYLH 386 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP+ LF R +SGC+RV N L LL+ + + + L Sbjct: 387 DTPKQRLFERSTRAFSSGCIRVENADLLADLLLQAQSPEGPPLKRYLNASG-PRWLTLQQ 445 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + V+ VY SAW QFR DIY L+ +G P Sbjct: 446 PLAVYLVYWSAWMDG-GRAQFRSDIYELEKAAIGRQPA 482 >gi|110637822|ref|YP_678029.1| hypothetical protein CHU_1418 [Cytophaga hutchinsonii ATCC 33406] gi|110280503|gb|ABG58689.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 558 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 86/353 (24%), Positives = 168/353 (47%), Gaps = 9/353 (2%) Query: 75 IAQTEKAIAFYQDILSRGGW-PELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + + + S+ + +LP R L LG++ + ++ RL + + + L+ Sbjct: 206 YESLRRTLRLVDSLGSQAIYNQKLPYLDRTLTLGDTCYIISSVKRRLQSTSEYNFDS-LN 264 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FD ++ ++++FQ GL SG +D T++ +N + VN+ R + L + Sbjct: 265 NTFDEQLQESIRIFQTHVGLHASGKIDKKTIDKLNFTAAEVRGAILVNMERFRWLPN-DL 323 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++LVNI +L + V +VIVGR TP+ + + I FNPYW +PRSI Sbjct: 324 PKEFILVNIADYTLRHFIDKNVVYTESVIVGREYTSTPVFEAMMTYIEFNPYWTVPRSIA 383 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 K+++ L+++P YL+ +N+ + + + F +++PG N++ Sbjct: 384 VKEILPSLKRNPNYLQSHNMDLFRGNAQVAIPSSFSNYTAGNFPFTIKENPGPKNSLGQV 443 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K+ F + + Y+HDTP LF R + GC+R+++ + + +L ++ I+++ Sbjct: 444 KLMFPNPYSIYLHDTPGKYLFEQEERSFSHGCIRLKDPLKFALHILSKQ-GVTQADIDKI 502 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ--FRDDIYGLDNVHVGIIPL 422 ++ +K + L ++PV Y + + K I F DIYG D + + Sbjct: 503 IRNKKNYVIPLKEKIPVMLTYFTCY-SKRGDIHLYFFKDIYGKDKKILEALQN 554 >gi|90410380|ref|ZP_01218396.1| hypothetical amidase [Photobacterium profundum 3TCK] gi|90328621|gb|EAS44905.1| hypothetical amidase [Photobacterium profundum 3TCK] Length = 578 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 162/326 (49%), Gaps = 11/326 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPS-----KGLSVAFDA-YVESAVKLFQMRHGLD 152 + G+ V+ + L + L D+ + + ++ + A+K FQ RHGL Sbjct: 236 KGLIRKGDVIVAGKDLAKVLFDLNDMTEAEYAFITQMPTVTNSGTMLEAIKRFQRRHGLA 295 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ ++T + +P R++ +N+ R + + ++ VNIP L+ + G Sbjct: 296 DDGLIGAATTAQLVMPYTDIARRIALNMQRFRNINMID-NQPHIWVNIPDYMLKIFDQGN 354 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V S VIVGR R T + S IN ++ NP W +P +I +KD++ ++ YL +N+ Sbjct: 355 VIFESKVIVGRTSRPTNLFSSAINTMVVNPTWNVPETIKRKDVIPKVKHSRDYLTAHNMR 414 Query: 273 MIDEKG--KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 +++ E+ +++DW++ P F F+Q PG N++ K + + Y+HDTP Sbjct: 415 ILNSWRDRTEIPADQIDWSNVNPKTFPHEFQQGPGPSNSLGRVKFLMPNDYSIYLHDTPA 474 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LFN R +SGCVRV DL +++ + ++ V+L+ + V Sbjct: 475 RGLFNKSKRNLSSGCVRVEKAYDLANFIIDFQKRKNIEPFNAMLNDGDLDTVRLSQRLGV 534 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDN 414 FVY++AW + + +Q R+DIYG D+ Sbjct: 535 DFVYLTAWVDEKNTLQMREDIYGYDS 560 >gi|59711764|ref|YP_204540.1| carboxypeptidase [Vibrio fischeri ES114] gi|59479865|gb|AAW85652.1| predicted carboxypeptidase [Vibrio fischeri ES114] Length = 515 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 177/363 (48%), Gaps = 17/363 (4%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 + + P S + + + + Y + R + N V + R Sbjct: 146 DLVSFTHALRP--SSDQYEELYQRLFHYYQPYEDSESVFIKERLIRP-NQLTDVNAIIYR 202 Query: 118 LIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L +SG+++ + + +D+ + +K FQ RHGL G++ TL +N+ Sbjct: 203 LQVSGEINHQEADMLLRQSNDHYDSSLVLIIKEFQKRHGLKQDGIIGPKTLHWLNMTAKE 262 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R+R + +N+ R++ + +VLVNIP+ + + G++ S VIVG+ +R+TPI Sbjct: 263 RVRIMALNIQRLRLW--ENKNSNFVLVNIPSYEMAYWQEGELVFTSKVIVGKPERRTPIF 320 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWN 289 +R+N I+FNP W +P I+++D++ + +L+ N +I + + ++++DW Sbjct: 321 TTRLNAIVFNPEWKVPTKIMREDILPKALNNKDFLQSQNFEIIPTWLSKEVISIDDIDWE 380 Query: 290 SPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + +Q G NA+ K +RN Y+HDTP LF+ R +SGC+RV Sbjct: 381 QVNVETFPYKLKQKSGNTNALGRYKFNTPNRNAIYLHDTPSRSLFSKQHRAYSSGCIRVE 440 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + L+K++ +S ++ + +T+ V L ++ V+ +Y ++W +D+ +QFR Sbjct: 441 KASEFAQLLMKES-HFSTQDYKDYHELPETSKVSLDQQISVYTIYQTSWVGEDNQVQFRM 499 Query: 408 DIY 410 IY Sbjct: 500 -IY 501 >gi|150026170|ref|YP_001296996.1| hypothetical protein FP2133 [Flavobacterium psychrophilum JIP02/86] gi|149772711|emb|CAL44194.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 566 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 100/393 (25%), Positives = 180/393 (45%), Gaps = 53/393 (13%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGN------SSVSVQRLRERLIISGDLDPSK 128 ++A+ +P L + S+ +V+ ++ RL+ D+ + Sbjct: 182 YKNLKQALQVLNAFPKD----SVPFVILKPKDKIALNKSNKAVKIIKSRLMYWHDMKQAN 237 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 ++ +D + AVK FQ RHGL P G++ T+ A+N + RI Q+ NL R + Sbjct: 238 TITNIYDKETQDAVKTFQSRHGLTPDGLIGKGTILALNFTKNQRIEQVISNLERWRWFAS 297 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 G Y+L+NIP SL A++N + ++VG+ RQTPIL S+++ I NP W +P Sbjct: 298 -DFGQNYLLINIPDYSLLAIKNNDTMQKQRIVVGKDTRQTPILESKVSNINLNPNWTVPP 356 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I+++D+ +D K + ++D K KE+ W + + + Q+PGK +++ Sbjct: 357 TILKEDIYPDAIKDKGAFKKKGLVILDHKNKEINPWS--WTIEDAKKYKYVQNPGKNSSL 414 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 KI F ++ + Y+HDT F R +SGCVR+ +++ +L+ + W+ I Sbjct: 415 GLMKINFPNKYSVYLHDTNHRDFFGLNYRSLSSGCVRLEKPLEMAEYLINNPEKWNLKTI 474 Query: 369 EEVVKTR---------------------------------------KTTPVKLATEVPVH 389 ++ KT V++A ++ +H Sbjct: 475 QDTTDINHYNKLQKEKEKKIAIKNAKLLAKNPLLVIPEKTYPKQELKTIVVRIADDIFIH 534 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +Y +AW K+ +QFR+DIY LD+ + Sbjct: 535 QLYWTAWLQKE-TLQFREDIYCLDSDLYNKLRN 566 >gi|228472762|ref|ZP_04057520.1| peptidoglycan-binding domain 1 protein [Capnocytophaga gingivalis ATCC 33624] gi|228275813|gb|EEK14579.1| peptidoglycan-binding domain 1 protein [Capnocytophaga gingivalis ATCC 33624] Length = 559 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 83/418 (19%), Positives = 172/418 (41%), Gaps = 18/418 (4%) Query: 20 LPMGLSLVEKPIHASVLDEI-----INESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 + L + + + ++ + + ++++ + + + I + + Sbjct: 141 ITASFLLFTRHLTRGRVPKVGDEKRVWKRTRPLLDNVELLLKLKDNDNLSQIIEALQPQQ 200 Query: 75 IAQTEKAIAFYQDILSRGGWPELP-----IRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 + Y+++ P ++ +G + ++ LR L G P + Sbjct: 201 PFY-KAMAQRYRELEKDTAEVLTPFAITDLKSYTIGYADSTILALRACLKHKGYESPVQE 259 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 D+ + AVK FQ G+ G+ + T+ + + + L +N+ R++ + Sbjct: 260 NPEQVDSLLVEAVKDFQRSIGIPADGVPGAQTMGYLLMTAKEKRDLLLLNMERLRWH-NK 318 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G Y+LVNIP L + ++ V+VG + TPI + + F P W +P+S Sbjct: 319 DLGEDYILVNIPEYRLRLFHKDSLVFQTRVVVGNPETPTPIFSDSLRYVEFRPTWSVPQS 378 Query: 250 IIQKDMMALL--RQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKI 305 I++K+M+ + +D + + KE+ +V+W+ F F + P + Sbjct: 379 IVRKEMIPNIISSRDSLKYAKRGYKLYENN-KEIDPAKVNWHDERISKRAFYFVEAPSEN 437 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K Y+ + Y+HDTP LF N R + GC+RV L LL+ + W Sbjct: 438 NSLGLVKFVLYNDMSIYLHDTPSKRLFGNTQRTYSHGCIRVEYPERLATKLLRGSEEWDA 497 Query: 366 YHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 ++E + T V+ + Y++AW ++ + R+D Y D + I+ Sbjct: 498 EKVKEAMTTGRDQRRVRPKQHFVIDVSYLTAWVDEEGKLIIRNDPYQFDKEQLKILNR 555 >gi|240139503|ref|YP_002963978.1| hypothetical protein MexAM1_META1p2949 [Methylobacterium extorquens AM1] gi|240009475|gb|ACS40701.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 648 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 95/415 (22%), Positives = 168/415 (40%), Gaps = 45/415 (10%) Query: 22 MGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMG---IDSDIPIISKETIAQ 77 ++ + + +I + A + S P + Sbjct: 198 YARDARGGRVNPAAISRLITPTLDLPPADTVLTRLAASGAGAGDVLQSYNPR--QPGYLA 255 Query: 78 TEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERL----IISGDLDPSKGLS 131 +K +A + ++G +LP P L LG S V LR R +G LD + G + Sbjct: 256 LKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEA 315 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR----IRQLQVNLMRIKKLL 187 A+D V AVK FQ GL +G + +T+ A+ + + VN+ R + L Sbjct: 316 DAYDRAVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMERWRWLP 375 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G YV VN+P L+ +G++ + VIVG+ TP + + NP W +P Sbjct: 376 PE-LGPNYVFVNVPEFKLKVFRDGQMRDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVP 434 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI+++ + + + ++ G RQ PG+ NA Sbjct: 435 PSILKQMLASG--------RTAGFEVVRRGGNI----------------SLRQPPGERNA 470 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F +++ Y+HDTP LF+ R + GCVRV + +L P+W++ Sbjct: 471 LGFIKFMFPNQHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PSWTQER 527 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +++++ ++L ++PVH Y +A + D+YG D + L Sbjct: 528 LKKLIGKG-ERTLRLPEKLPVHLAYFTAEVDDLGSYRTLSDLYGYDGPMKVALGL 581 >gi|163852171|ref|YP_001640214.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|163663776|gb|ABY31143.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] Length = 646 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 96/415 (23%), Positives = 167/415 (40%), Gaps = 45/415 (10%) Query: 22 MGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMG---IDSDIPIISKETIAQ 77 ++ + + +I + A + P + Sbjct: 196 YARDARGGRVNPAAISRLITPTLDLPPADTVLTRLAASGAAAGDVLQGYNPR--QPGYLA 253 Query: 78 TEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERL----IISGDLDPSKGLS 131 +K +A + ++G +LP P L LG S V LR R +G LD + G + Sbjct: 254 LKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEA 313 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR----IRQLQVNLMRIKKLL 187 A+D V AVK FQ GL +G + +T+ A+ + + VN+ R + L Sbjct: 314 DAYDRSVADAVKNFQRSRGLPANGTLTRATVAALVNSSVPKTSASEADILVNMERWRWLP 373 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G YV VN+P L+ +G+V + VIVG+ TP + + NP W +P Sbjct: 374 PE-LGPNYVFVNVPEFKLKVFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVP 432 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI+++ + + + ++ G RQ PG+ NA Sbjct: 433 PSILKQMLASG--------RTAGFEVVRRGGNI----------------SLRQPPGERNA 468 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F +++ Y+HDTP LF+ R + GCVRV + +L PTW++ Sbjct: 469 LGFIKFMFPNQHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PTWTQER 525 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +++++ ++L ++PVH Y +A + D+YG D + L Sbjct: 526 LKKLIGKG-ERTLRLPEKLPVHLAYFTAEVDDLGSYRTLPDLYGYDGPMKVALGL 579 >gi|333008910|gb|EGK28370.1| putative peptidoglycan binding domain protein [Shigella flexneri K-272] gi|333020220|gb|EGK39490.1| putative peptidoglycan binding domain protein [Shigella flexneri K-227] Length = 550 Score = 296 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 104/392 (26%), Positives = 164/392 (41%), Gaps = 54/392 (13%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S ++ S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD--------- 125 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPG 275 Query: 126 ---------------------------------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ + A+D + AVK FQ GL Sbjct: 276 DDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLG 335 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + +T + +NV R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 336 ADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTEL--STGIMVNIPAYSLLYYQNGN 393 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + Sbjct: 394 QVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYT 453 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + +VDW++ N FR Q PG N++ K S Y+HDTP Sbjct: 454 VMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPN 513 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 LF R +SGCVRV DL LL+D Sbjct: 514 HNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 >gi|294011534|ref|YP_003544994.1| putative peptidoglycan binding domain protein [Sphingobium japonicum UT26S] gi|292674864|dbj|BAI96382.1| putative peptidoglycan binding domain protein [Sphingobium japonicum UT26S] Length = 484 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 156/385 (40%), Gaps = 37/385 (9%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 + R+ S P + K +A Y+ I GGWP L Sbjct: 122 ARFDPRPGLAKAIAEDRLPQWALSLTPPYA--GYDGLRKGLANYERIRDAGGWPTLTA-- 177 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 SS V R R+ I SV + ++ Q R+GL+P+G++D+ T Sbjct: 178 ----QSSPDVV--RARIAIE-------DKSVTPGEKLVDVLQRAQRRYGLNPTGLLDART 224 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +NVPVD RI + N+ R + + Q + + V VNI AA L E + + Sbjct: 225 LRELNVPVDDRIAAIMANMERWRWMPRQ-LPVNRVQVNIAAAVLTVFEGDQPVTSMRAVT 283 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G D TP+L S I+ I+ NP W +P SI ++++ R L ++ Sbjct: 284 GAPDNATPMLVSSIHSIVVNPPWNVPASIAKRELWPKGR---AALIRQGYKIV------- 333 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 Q G +A+ K +F + Y+HDTP F++ R + Sbjct: 334 --------GTPETGERIVQPAGPNSALGRLKFDFNNPFAVYLHDTPSRAKFSSYDRLASH 385 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GC+R+ + L ++ P I+ ++ T KT V L EV V+ +Y +A++ + Sbjct: 386 GCIRLEKPVPLAELMVASDPDL-AGKIQSLIDTGKTQRVSLPKEVAVYLLYWTAFAGNNG 444 Query: 402 IIQFRDDIYGLDNVHVGIIPLPEDH 426 + FR D YG D + I Sbjct: 445 TMNFRSDPYGWDKLLAAKIEASSRR 469 >gi|326336070|ref|ZP_08202242.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691579|gb|EGD33546.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 559 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 91/417 (21%), Positives = 169/417 (40%), Gaps = 18/417 (4%) Query: 20 LPMGLSLVEKPIHASVLDEI-----INESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 + L + + ++ I +++ + D + I + + Sbjct: 141 ITASFLLFTNHLTRGRIPKVGDEKRIWRRNRPYLDNVELLLKLKDDDNLSLIIDALQPQ- 199 Query: 75 IAQTEKAIAFYQDILSRG--GWPELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKG 129 + + Y+++ +P I L +G + ++ LR L G P +G Sbjct: 200 QSFYKAMAQKYRELEKDTAITYPLFSITDLKSYGIGYADSTILALRAHLEYKGYKSPVQG 259 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 D+ + AVK FQ G+ G+ + T+ + + + + L +N+ R++ + Sbjct: 260 EPQQVDSLLIEAVKEFQRSIGIPADGIPGALTMNYLQMNIKQKRDLLLLNMERLRWQ-NK 318 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G Y+LVNIP L + + V+VG TPI + I F P W +P+S Sbjct: 319 DLGEDYILVNIPEYCLRLFHKDSLMFETRVVVGNPKTPTPIFSDSLRYIEFRPTWSVPQS 378 Query: 250 IIQKDMMALL--RQDPQYLKDNNIHMIDEKGKEVFVEEVDW--NSPEPPNFIFRQDPGKI 305 I++K+M+ + D + + KE+ +V+W + F F +DP + Sbjct: 379 IVRKEMIPNIISSGDSLKYAKRGYKLYENN-KEIDPTQVNWKDDQLHKRIFYFVEDPSER 437 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K Y+ + Y+HDTP LF N R + GC+RV +LLK + W Sbjct: 438 NSLGLVKFVLYNDMSIYLHDTPSKRLFGNTQRTYSHGCIRVEYPDQFATYLLKSSEDWDE 497 Query: 366 YHIEEVVKTRKTT-PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + E + T K V + Y++AW K + R+D Y D + ++ Sbjct: 498 QKVREAMDTGKNQYRVHPKKHFVIDISYLTAWVDKKGNLIIRNDPYQFDKEQLKVLN 554 >gi|213963732|ref|ZP_03391982.1| putative peptidoglycan binding domain protein [Capnocytophaga sputigena Capno] gi|213953612|gb|EEB64944.1| putative peptidoglycan binding domain protein [Capnocytophaga sputigena Capno] Length = 563 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 97/422 (22%), Positives = 177/422 (41%), Gaps = 23/422 (5%) Query: 20 LPMGLSLVEKPIHASVLDEII---NESYHSIVNDRFD-------NFLARVDMGIDSDIPI 69 + L K + + I + + + + + I P Sbjct: 143 ITASFLLFTKHLTSGRFTRIAYGKHTWRKPKYDAQKNINLLLHIGDKTSLAGIITPLFP- 201 Query: 70 ISKETIAQTEKAIAFY-QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 + Q + Q ++ + P + G ++ V +LR L G + Sbjct: 202 -HNKQYEQMKALYKQLKQQVVDTFITVDFPAKDFVYGYTAPIVVQLRNSLKQKGFEAAPE 260 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + D+ + V+ FQ +GL G++ TL +N+ LQ+N+ R++ Sbjct: 261 IEAQMVDSTLIRTVQRFQKSNGLTADGLLGKQTLYFLNMNKTRERDLLQLNMERMRVFNN 320 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +G Y LVNIP L + ++ V+VGR + TPI I + F P W +P+ Sbjct: 321 -DLGEHYALVNIPDFKLSLFHKDSLQFQTRVVVGRTETSTPIFTDTIRYVEFRPTWSVPQ 379 Query: 249 SIIQKDMMALL--RQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGK 304 SII+K+M+ + + DP+ + M ++ GK+V +DW S F F + P Sbjct: 380 SIIKKEMLPQIISQADPEKYQKRGYTMYEK-GKKVDPTTIDWTDPSVHKRGFHFVEAPSA 438 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD---TP 361 N++ K + + Y+HDTP F R + GCVRV+N +L LLK+ Sbjct: 439 NNSLGLVKFILTNDMSIYLHDTPSKYFFQRDDRALSHGCVRVQNPNELAYHLLKNEATET 498 Query: 362 TWSRYHIEEVVKTRKTT-PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 W+ + E + +++ + L T+ ++ +Y +A+ ++ + ++DIY LDN + I Sbjct: 499 PWTLEKVNEAMNGKRSQYRIALKTKYKINILYYTAFIDENGELTLKNDIYDLDNEQLKEI 558 Query: 421 PL 422 Sbjct: 559 KR 560 >gi|42522877|ref|NP_968257.1| putative peptidoglycan-binding protein [Bdellovibrio bacteriovorus HD100] gi|39574073|emb|CAE79250.1| putative peptidoglycan-binding protein [Bdellovibrio bacteriovorus HD100] Length = 526 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 99/383 (25%), Positives = 169/383 (44%), Gaps = 24/383 (6%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSV 111 + + +D P S + A+ +L G W + +PL LG + Sbjct: 143 TSQSDAKLALDKMAPQFS--VYQSLKMALERLYPLLETGLWENITPAKKPLSLGKKDPVI 200 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS--STLEAMNVPV 169 +L+ERL G ++ FD + A+ Q+ + P G++ T +V + Sbjct: 201 IKLKERLRQLGY--RIDSMNDTFDQDMLIAINDIQLNLKMKPDGVISPGGRTWRFFSVSL 258 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQT 228 R+ QLQ ++ +++ Q + R++ VN + + + + I G +R+T Sbjct: 259 LDRLSQLQADMEQLRWFP-QNLEDRHIFVNTAFSHFMMTDKKNNISMSFKAINGTAERKT 317 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ-----DPQYLKDNNIHMIDEK-GKEVF 282 P L RI ++ NP W IP ++ D + +L++ +Y DN + + + Sbjct: 318 PTLRDRITYLVMNPTWTIPPTVFLNDKVEILKKLDTKGIRKYFTDNRFEVYTADFSRTID 377 Query: 283 VEEVDWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +DW S + NF RQ P NA+ K + Y+HDT + LF R + Sbjct: 378 PTSIDWKSIKSSSVNFYIRQKPSYNNALGVVKFMMTNPYAIYLHDTNQRDLFGEAQRLRS 437 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEE-VVKTR----KTTPVKLATEVPVHFVYISA 395 SGCVR+ +DL +LL T WSR IE VVK K T V L +PV+ V +++ Sbjct: 438 SGCVRLEKPLDLAEYLLAGT-QWSRPQIENFVVKEGQLVDKETRVDLKEPMPVYLVPVTS 496 Query: 396 WSPKDSIIQFRDDIYGLDNVHVG 418 D +I+F +D+YG + + + Sbjct: 497 QMNSDGVIRFVEDVYGHNQLILS 519 >gi|34558804|gb|AAQ75149.1| conserved hypothetical protein [Alvinella pompejana epibiont 6C6] Length = 559 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 178/366 (48%), Gaps = 20/366 (5%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP----LHLGNSSVSVQRLRERLII 120 S P+ + + A+ Y+ I ++ P +P L G+ + +++ERL + Sbjct: 174 SLTPL--PKRHSDLIDALEIYRAIPTK--LPRIPYTRNFSGLKFGDVDRKIAKIKERLAM 229 Query: 121 SGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 GD G S FD ++SA+ ++ R L+ +G++D T+ MN P+ L I + Sbjct: 230 EGDYPKESGAIYSDIFDEKLKSAIYRYKERFNLEQNGIIDKVTIYYMNKPISLLIDSIIT 289 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 NL ++K + +++VNIP +++ ++G L + +VGR R TPI HS++ + Sbjct: 290 NLDKLKVSPNK-FPDEFIMVNIPDFTMDYYKDGISNLHMSAVVGRDKRPTPIFHSKMTYL 348 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE------ 292 NP W IP ++++KD++ L ++P Y++ +NIH+ + ++ +D N Sbjct: 349 ELNPNWNIPENLVRKDLIPTLIEEPDYMEKHNIHVFYGWKDKKEIKNLDINKLTRYLDEK 408 Query: 293 --PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + F Q PG NA+ K F ++ + Y+HDT LF R +SGC+R+ Sbjct: 409 NGHIPYRFVQYPGDDNALGRIKFMFPNKYSVYLHDTDNKSLFERRYRVYSSGCMRISKPF 468 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L L + I+ +T K ++ +PV+ Y + + +D ++ FR DIY Sbjct: 469 QLLEALKPHLKSSDIAQIDRYRQTLKNKIMRFTKSLPVYTTYFTVF-KRDGMVFFRKDIY 527 Query: 411 GLDNVH 416 G D + Sbjct: 528 GYDKMI 533 >gi|288957909|ref|YP_003448250.1| peptidoglycan-binding domain 1 protein [Azospirillum sp. B510] gi|288910217|dbj|BAI71706.1| peptidoglycan-binding domain 1 protein [Azospirillum sp. B510] Length = 434 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 154/321 (47%), Gaps = 6/321 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + LG+S V RL +RL+ G L ++ F A ++ AVK FQ+ + P G+V Sbjct: 81 GGLMKLGSSGERVGRLAQRLVELGLLPAD-KVAELFTADIDHAVKAFQLAQRMKPDGLVG 139 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + T A++ ++ + + ++ ++VN+ + V G+ L Sbjct: 140 AGTRAALDRTPAEAAALMRQSAVAMRSF-RDTAPDNVLVVNLTDQTTTLVRGGEEELTMR 198 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 IVGR R+TP+L RI I+ NP W +P +++++D + +LR N I +D G Sbjct: 199 AIVGRPSRETPLLTDRITHIIVNPTWTVPPTVLKEDKLPMLRAKGTPGIQNAIVYLD--G 256 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 +EV E VDW+ P Q PG NA+ + + + Y+H T EP LF +R Sbjct: 257 QEVAPETVDWHDVTPGRVRIVQQPGNHNALGRFRFNLTNPYDIYLHGTNEPRLFARELRS 316 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVR+ + L LL+ + + + I+ ++ ++ VKL T +PV FVY A Sbjct: 317 ISSGCVRLEDPRRLAELLLQGS-SVTPERIDRMLDKQQPQWVKLPTPMPVQFVYWIATVE 375 Query: 399 KDSIIQFRDDIYGL-DNVHVG 418 D ++ DIY D+ Sbjct: 376 ADGAVRLHPDIYDRADDAPTA 396 >gi|42522720|ref|NP_968100.1| putative periplasmic protein YcbB [Bdellovibrio bacteriovorus HD100] gi|39573916|emb|CAE79093.1| putative periplasmic protein YcbB [Bdellovibrio bacteriovorus HD100] Length = 577 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 102/400 (25%), Positives = 184/400 (46%), Gaps = 31/400 (7%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL--P 98 E I + + + + G+D P + ++ +A+++ I + GGW ++ Sbjct: 167 AELNQVISSVQANVSAKALVAGLDKFAPAHLR--YVDLKQLLAYFRSIQTAGGWSQIKLA 224 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L GN ++ +R RL G PS G +DA ++ ++ Q +G+ G++ Sbjct: 225 KKSLRQGNQDPAIPAIRGRLQSLGYAVPSTG--DIYDAELKRVIEDVQGVNGMGVDGVIG 282 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + + +N V R+ QL+VN+ +++ L + M R+V VN+ + + G+ + Sbjct: 283 NEVMTFLNTSVADRVFQLEVNMEKLRWLPKA-MESRHVFVNLATTEFQFFDEGRKIMHFK 341 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ--YLKDNNIHMID- 275 I G+ R+TP+L + ++ + NP W P SII KD + LR YL+ + + +I Sbjct: 342 TINGQSYRRTPVLRNMLSFVELNPTWTAPESIIFKDKINTLRGKDGQEYLRKHRMRLIRK 401 Query: 276 EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 GKEV + S NF + RQDP + NA+ S K + + Y+H T P LF+ Sbjct: 402 SDGKEVIPSDELLQSLSRSNFPYLLRQDPWRKNALGSIKFPLPNEWSIYLHHTDNPDLFD 461 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPT---------WSRYHIEEVVKTRK-------- 376 R +SGCVR+ + ++L++ W + +E V K Sbjct: 462 ESKRHLSSGCVRLEDPFTFAEYILRNNVAVKSTQTDDYWPKDKLESFVPPEKSEAYVDRE 521 Query: 377 --TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + L VPV+ +Y++ +D ++F D+YG D Sbjct: 522 NWEKRIHLKVPVPVYLMYLTVDRAQDGAVRFVKDVYGQDE 561 >gi|149911416|ref|ZP_01900034.1| peptidoglycan binding domain protein [Moritella sp. PE36] gi|149805524|gb|EDM65529.1| peptidoglycan binding domain protein [Moritella sp. PE36] Length = 512 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 27/401 (6%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 L+L I + + + ++ + R + IDS +P + + + +AI Sbjct: 108 ALTLELYHIASQSYGNQLKSAANNPDDFRTALINDTLPAYIDSAMPQFNA--VIRLRQAI 165 Query: 83 AFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYV 138 Y+ I WP+L LG V+ LR++LI DL SK FD + Sbjct: 166 NKYKGI-KNIAWPKLTDSFNPQLGQGHAEVKILRKKLITFNDLRTVSTSKHRLHIFDQSI 224 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 + +K FQ R+GL P+G ++++T A+N +D RI +LQ+NL R L + +Y++V Sbjct: 225 INGLKHFQRRNGLKPTGRLNATTKNALNQNIDSRINKLQINLWRWLSLP-RIPPTKYIMV 283 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NIPA L ++ G+ + VIVG+ QTPI+ + +N + NP W R+II D++ L Sbjct: 284 NIPAFDLRLIDKGEALMEMKVIVGKPSNQTPIMITEVNSVTLNPTWTPTRNIINNDLLPL 343 Query: 259 LRQDPQYLKDNNIHMIDEKG-----KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++ L N ++ G +EV + + Q PG NA+ + + Sbjct: 344 HNKNHTALNSLNFYLAKGYGANTLYREVPPNLQEM----LKQYRLVQRPGSNNALGNVRF 399 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + N ++HDTP LF R + GC+R+ DL L I + Sbjct: 400 NIKNNNAIFLHDTPTKYLFKRQNRAFSHGCIRLEKSDDLLTIL----------RINQRKN 449 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T ++L +PV Y +AW I +R+D+Y D Sbjct: 450 NSGTKHLRLQQSLPVFITYQTAWIDNLGEINWRNDLYNKDK 490 >gi|322434022|ref|YP_004216234.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX9] gi|321161749|gb|ADW67454.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX9] Length = 625 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 109/432 (25%), Positives = 184/432 (42%), Gaps = 68/432 (15%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP-ELPI--RPLHLGNSSVSVQRL 114 V I S P + +TEKA+A Y D+ + G P LP +P+ G + + L Sbjct: 184 DVPKLIASVEPDSDQ--YRETEKALAHYNDLAKQQGTPEPLPAVDKPITSGGHYPAAEAL 241 Query: 115 RERLIISGDLDPSKGL-------------------------------------------- 130 RL + GDL Sbjct: 242 AARLQLEGDLAGEPTAPEAPAPAPAPEAPKPTRTAAARASIGKAFARARGKSQAAPAATE 301 Query: 131 ---------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 S + A + AVK +Q RH L +G + ++T+ ++NVP+ R +QL +L Sbjct: 302 AAAPPAHVPSTVYTADLADAVKHYQSRHSLTANGQLTAATVTSLNVPLTARSQQLADSLE 361 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRV--DRQTPILHSRINRI 238 R++ L + + + VN+P L E+ + + V+VG+V + QTP+ + + Sbjct: 362 RLRWLPDPYLHAP-LQVNLPEFVLRGFGEDHQQQFKMNVVVGQVVGEHQTPVFTHMMKYV 420 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 +F P+W +P SII+K++ + + YL+ +N +D KG V S E + Sbjct: 421 IFRPFWNVPVSIIKKELAGHIAKSGVGYLEAHNFETVDAKGAHVNASA---ESIERGGVV 477 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 R+ PG N++ K F + + Y+H TP LF R + GCVRV + L VW+L Sbjct: 478 VREKPGPKNSLGLIKFMFPNEYDIYLHSTPAQQLFARSRRDFSHGCVRVEHPDQLAVWVL 537 Query: 358 KDTPT-WSRYHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++TP W + + ++ V L ++P+ Y +A ++ + F DDIY D Sbjct: 538 QNTPRNWDLQKVTDAMQNGADNHQVNLTKQIPIVIFYATARVDENGQVDFFDDIYHYDKQ 597 Query: 416 HVGIIPLPEDHP 427 ++ +P Sbjct: 598 LEDVLAKGMPYP 609 >gi|148258072|ref|YP_001242657.1| hypothetical protein BBta_6864 [Bradyrhizobium sp. BTAi1] gi|146410245|gb|ABQ38751.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 702 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 148/333 (44%), Gaps = 30/333 (9%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V +LR +L ++ + +DA V +AV+ FQ L P+G++D T++A+ Sbjct: 329 MSDPRVPKLRAKLGLT-----ENADDIRYDAKVAAAVRKFQESADLKPTGVLDDRTVKAL 383 Query: 166 NVPVDLR-IRQLQVNLMRIKKLLEQK----MGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 N P + I + VN+ R + L +G YV++NIP +L+ ++ G + V+ Sbjct: 384 NTPKRDKQIDTILVNMERWRWLPRDLGAPALGDAYVILNIPDYTLKVMQRGAQVWTTRVV 443 Query: 221 VGRVD-RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 G+ TP+L + I NP W +P SII + + L+QDP L + + + Sbjct: 444 TGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLRLERARD- 502 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + Q PG+ NA+ + F ++ Y HDTP+ LF R Sbjct: 503 --------------GSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKHLFAREDRAF 548 Query: 340 TSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 + GC+RV+ LL ++ I + + +K T +PV+ Y +A+ Sbjct: 549 SHGCMRVQYPDQYASVLLNIAMPGERYTPERIRSMYGS-SEIDLKFPTPIPVNITYQTAF 607 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPID 429 +QFR D+YG D + I+ ++ Sbjct: 608 VDDAGKLQFRKDVYGRDATMISILKNGRGKDLE 640 >gi|188582120|ref|YP_001925565.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179345618|gb|ACB81030.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 662 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 98/368 (26%), Positives = 162/368 (44%), Gaps = 40/368 (10%) Query: 72 KETIAQTEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERL----IISGDLD 125 + +K +A + ++G +LP P L LG S V LR R +G LD Sbjct: 265 QPGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLEKQAAGTLD 324 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR----IRQLQVNLM 181 + G + A+D V AVK FQ GL SG + +T+ A+ P + L VN+ Sbjct: 325 AAPGEADAYDGAVADAVKSFQRSRGLPASGTLTRATVAALANPSVPKTAASEADLLVNME 384 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + L + +G YV VN+P L+ +G + + VIVG+ TPI + + N Sbjct: 385 RWRWLPAE-LGPDYVFVNVPEFKLKVFRDGHLRDETRVIVGKPTSPTPIFSGMMEYAVVN 443 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P SI+++ + + + ++ GK + RQ Sbjct: 444 PSWYVPPSILKQMLASG--------RTAGFEVVRR-GKTIS---------------LRQP 479 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG+ NA+ K F ++++ Y+HDTP LF+ R + GCVRV + +L P Sbjct: 480 PGERNALGFIKFMFPNQHSVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---P 536 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 TW+ +++++ ++L ++PVH Y +A + D+YG D + Sbjct: 537 TWTEERLKKLIGKG-ERTLRLPEKLPVHLAYFTAEVDDLGSYRTLTDLYGYDGPMKAALG 595 Query: 422 L-PEDHPI 428 L P + Sbjct: 596 LAPRSEAV 603 >gi|167624211|ref|YP_001674505.1| peptidoglycan-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354233|gb|ABZ76846.1| Peptidoglycan-binding domain 1 protein [Shewanella halifaxensis HAW-EB4] Length = 444 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 103/398 (25%), Positives = 176/398 (44%), Gaps = 16/398 (4%) Query: 21 PMGLSLVEKPIHASVLDEIIN--ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 + L ++E++N + F + ++ + ++ ++ I Sbjct: 46 ALAFDLNAGE----SVNELMNMVNLARLLDRQVFWGSSEHQSLSVEQYLNLVERKDIQSL 101 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFD 135 K I Y+ + R WP + L LG + V +LR L GD+ P FD Sbjct: 102 RKLIKHYRSL-ERYQWPTVAPMELRLGLRTKEVAKLRWILTQVGDITPYSIPAYRESIFD 160 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 VE+ +KLFQ RHG G + S TL ++N +R+ QLQ L + L Y Sbjct: 161 PSVEAGLKLFQRRHGHAVDGKLGSQTLLSLNTEPSIRVAQLQNALKQR--LKRFDEAKDY 218 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 VLVN+ +L +NG L VIVG+ +TP L++ I+ I NP W P SII +D+ Sbjct: 219 VLVNLMDHTLRITKNGVEQLVMPVIVGKPTSKTPELNTTISVITVNPSWTPPASIIYQDI 278 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN----SPEPPNFIFRQDPGKINAMAST 311 + + + P YL++N+ + K + + + + Q PG NA+ Sbjct: 279 LQSVDKQPNYLRNNDFAFKSNETKHIDHNVAGMDPKSLKNKLKKSVLVQLPGTKNALGKY 338 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 + + + ++HDTP LF R + GC+R+ +L+ P +R + Sbjct: 339 RFTIPNSDAIFLHDTPSKHLFKRQNRALSHGCIRLSQPALFAQYLINKEPAETRLKFKNA 398 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 VK+++T +L +++ + +Y + W KD +Q R I Sbjct: 399 VKSKQTRHFRLTSQLSIDVIYQTVWIDKDGSLQVRGTI 436 >gi|319957846|ref|YP_004169109.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319420250|gb|ADV47360.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 575 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 99/377 (26%), Positives = 177/377 (46%), Gaps = 16/377 (4%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRE 116 + + +P+ + + +A Y+ + + +P+L R L + ++ + +++ Sbjct: 182 ELAPYLRKQLPLEPR--YRKLLALLAKYRTMPN---FPKLSYGRTLRINSTDSRIPQIKR 236 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 L GD FD A++ F+ R L P VD+ ++A+N +R++ Sbjct: 237 MLKFFGDYPKHFAEDNQFDRPFAQAIRSFRSRFKLPPGNTVDNKVIQALNTTKKEYLRKI 296 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 VNL ++K L + YV VN+P + NG+ S V+VGR+DR TPI S++ Sbjct: 297 LVNLEKLK-LYPHRWEPDYVEVNVPEFKMRFYRNGQPIFSSDVVVGRIDRPTPIFDSKMT 355 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW-------N 289 ++ NP W IP +++++D++ +L+++P YL+ +NIH+ E+D+ + Sbjct: 356 YMVLNPTWTIPDNLVRRDLIPMLKKEPDYLQKHNIHVYTSYKPNAPEVELDFEKLFSYEH 415 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 P + F Q P NA+ K F ++ + Y+HDT LF R +SGC+RV Sbjct: 416 DTRPIPYRFVQFPSDQNALGRVKFMFPNKYSVYLHDTDNKKLFGYRYRVFSSGCMRVAKP 475 Query: 350 IDLDVWLLKDTPT-WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 D LL +S I+E++ + K T ++L +PVH VY + F D Sbjct: 476 FDFMDLLLHYARGNYSEGKIQEILASNKPTTIRLKKAIPVHIVYFTVRREGK-KDYFFYD 534 Query: 409 IYGLDNVHVGIIPLPED 425 IY D + + + Sbjct: 535 IYLYDKMIWESMEGHKK 551 >gi|146338286|ref|YP_001203334.1| putative signal peptide [Bradyrhizobium sp. ORS278] gi|146191092|emb|CAL75097.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 691 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 30/333 (9%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V +LR +L ++ +LD + +DA V +AV+ FQ L P+G++D T++A+ Sbjct: 317 MSDPRVPKLRAKLGLTENLD-----DIRYDAKVAAAVRKFQDSVDLKPTGVLDDRTVKAL 371 Query: 166 NVPVDLR-IRQLQVNLMRIKKLLEQK----MGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 N P + I + VN+ R + L + +G YV++NIP +L+ +++G + V+ Sbjct: 372 NTPKRDKQIDTVIVNMERWRWLPRELGAPAIGNAYVILNIPDYTLKVMQHGAQVWTTRVV 431 Query: 221 VGRVD-RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 G+ TP+L + I NP W +P SII + + L+QDP L + + + Sbjct: 432 TGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLRLERARD- 490 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + Q PG+ NA+ + F ++ Y HDTP+ LF R Sbjct: 491 --------------GSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAF 536 Query: 340 TSGCVRVRNIIDLDVWLLKDT---PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 + GC+RV+ LL T ++ I + +K T +PV+ Y +A+ Sbjct: 537 SHGCMRVQYPDQYASVLLNLTMPGERYTPERIRG-MYGSSEIDLKFPTPIPVNITYQTAF 595 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPID 429 +QFR D+YG D + I+ ++ Sbjct: 596 VDDAGKLQFRKDVYGRDATMIAILKNSRGKDLE 628 >gi|332878616|ref|ZP_08446336.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683517|gb|EGJ56394.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 568 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 155/318 (48%), Gaps = 11/318 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G ++ +++LR+ L G ++ D+ + V+ FQ GL P G++ TL Sbjct: 241 GYTAPVIEKLRKGLKQKGFEAIAEADPQTVDSTLIRTVQRFQESKGLTPDGVLGKQTLYF 300 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 +N+ L++N+ R++ +G Y +VNIP L E V + V+VG+ Sbjct: 301 INMNDTRTRDLLKLNMERMRVFNNY-LGDHYAIVNIPDFKLLLFEKDSVLFETRVVVGKS 359 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMIDEKGKEVF 282 TPI I + F P W +P+SII+K+M+ + + +P+ K+ M + GK+V Sbjct: 360 ATSTPIFTDTIQYVEFRPTWSVPQSIIKKEMIPQIVSQANPEKYKNRGYTMYE-NGKKVD 418 Query: 283 VEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +V+WN + F F + P N++ K + + Y+HDTP F+ R + Sbjct: 419 PTQVNWNDPAVHKRGFYFVEAPSANNSLGLVKFILTNGMSIYLHDTPSKHFFDRDYRALS 478 Query: 341 SGCVRVRNIIDLDVWLLKD---TPTWSRYHIEEVVKTRKTT--PVKLATEVPVHFVYISA 395 GC+RV+N +L LLK+ W+ + E ++ K + + L T+ V+ +Y +A Sbjct: 479 HGCIRVQNPSELAYHLLKNEESQTPWTIEKVTEAMQNTKRSQYRIALKTKYKVNIIYYTA 538 Query: 396 WSPKDSIIQFRDDIYGLD 413 W + + ++DIY LD Sbjct: 539 WVDNNGEVVIKNDIYELD 556 >gi|307294368|ref|ZP_07574212.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] gi|306880519|gb|EFN11736.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] Length = 485 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 156/385 (40%), Gaps = 37/385 (9%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 + ++ + P + K +A Y+ I GGWP L Sbjct: 123 APFDPRPGLAKAISENKLPQWALNLTPPYA--GYDGLRKGLANYERIRDAGGWPTLTA-- 178 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 S+ V R R+ I SV + ++ Q R+GL+P+G++D+ T Sbjct: 179 ----QSAPDVV--RARVAIE-------DKSVTPGEKLVDVLQRAQRRYGLNPTGLLDTRT 225 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +NVPVD RI + N+ R + + Q + + V VNI AA L E + + Sbjct: 226 LRELNVPVDDRIAAIMANMERWRWMPRQ-LPVNRVQVNIAAAVLTVFEGDEPVTSMRAVT 284 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G D TP+L S I+ I+ NP W +P SI ++++ R L ++ Sbjct: 285 GAPDNATPMLVSSIHSIVVNPPWNVPASIAKRELWPKGR---AALIRQGYKIV------- 334 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 Q G +A+ K +F + Y+HDTP F++ R + Sbjct: 335 --------GTPETGERIVQPAGPNSALGRLKFDFNNPFAVYLHDTPSRAKFSSYDRLASH 386 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GC+R+ + L ++ P I+ ++ T KT V L EV V+ +Y +A++ + Sbjct: 387 GCIRLEKPVPLAELMMAGNPDL-AGKIQSLIDTGKTQRVSLPREVAVYLLYWTAFASNNG 445 Query: 402 IIQFRDDIYGLDNVHVGIIPLPEDH 426 + FR D YG D + I Sbjct: 446 TMSFRSDPYGWDKLLAAKIEASSRR 470 >gi|237757093|ref|ZP_04585533.1| peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237690747|gb|EEP59915.1| peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 506 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 109/437 (24%), Positives = 199/437 (45%), Gaps = 35/437 (8%) Query: 7 INKILYCFFVY------------LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDN 54 +N Y FF+ L L + L L I + E N +++ Sbjct: 77 LNPSNYNFFLSRNPVKDEIELSKLTLKICLDLYNGTIDPKDIFETWNLPKKKF--NKYKE 134 Query: 55 FLARVDMGIDSDIPIISK---ETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSV 109 + ++P + + E + ++ Y +I++ +P LP + L Sbjct: 135 LATIIKENQLENLPQLCQPNHEGYLTLRQYLSKYYEIMA--LYPSLPKINKKLKPKMKDK 192 Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 V++LR+ L I G D + S +D + +VK FQ L+ G++ TL +N P+ Sbjct: 193 EVKKLRQLLYIYGFYDGN-TNSYIYDDELLESVKRFQESRNLEADGVIGVKTLNELNRPL 251 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD---- 225 + I +++N+ + + L + + + VNIP+ L+ E+ L + VIVG+ Sbjct: 252 NELIDIIKINMEKYRWLP-ENLAESRIEVNIPSFELKYYEDNTEILSTEVIVGKNYEEDF 310 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 R TPI + +I +I NPYW +P+ I KD++ ++ +P++L+D + + G+EV ++ Sbjct: 311 RPTPIYYGKIEKITINPYWYVPKKIAAKDILKKIKSNPRFLEDFSFKVFY-NGQEVDYKK 369 Query: 286 VDW--NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 ++W + F Q PG N + KI F + Y+HDTP LF + R +SGC Sbjct: 370 INWWEYNENNFGFTLIQSPGNKNFLGRIKITFSNPFQVYLHDTPFKELFKHKKRAFSSGC 429 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 +RV + + L ++L + I + + KT + ++ V+ Y +A D I Sbjct: 430 IRVNDPLSLTSYILNK----DKSEILNYIDSNKTIGLTPCKDIYVYIFYFTALVKND-TI 484 Query: 404 QFRDDIYGLDNVHVGII 420 F +D+Y D + I+ Sbjct: 485 YFYEDLYNFDIKILNIM 501 >gi|188995993|ref|YP_001930244.1| Peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931060|gb|ACD65690.1| Peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 506 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 102/435 (23%), Positives = 195/435 (44%), Gaps = 31/435 (7%) Query: 7 INKILYCFFVY------------LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDN 54 +N Y FF+ L L + L L I+ + N +++ Sbjct: 77 LNPSNYNFFLSRNPVKDEIELSKLTLKICLDLYNGTINPKEIFRTWNLPKKKF--NKYKE 134 Query: 55 FLARVDMGIDSDIPIISKETIA---QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSV 111 + ++P + + +K ++ Y +I++ + + L V Sbjct: 135 LANIIKENQLENLPELCQPNYDGYLALKKYLSKYHEIIASNPYLPKINKKLKPKTKDKEV 194 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 ++LR+ L I G + + S +D + +VK FQ L+ G++ TL +N P++ Sbjct: 195 KKLRQLLYIYGFYNGN-TNSDVYDDELLESVKRFQESRNLEADGIIGVKTLSELNRPLNE 253 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD----RQ 227 I +++N+ + + L + + + +NIP+ L+ EN L + VIVG+ R Sbjct: 254 LIDIIKINMEKYRWLP-ENLAENRIEINIPSFELKYYENDIEVLSTEVIVGKNYEEDFRP 312 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 TPI + +I +I NPYW +P+ I KD++ ++ +P++L+D + G+EV ++++ Sbjct: 313 TPIYYGKIEKITLNPYWYVPKKIAAKDILKKIKSNPRFLEDFGFKVFY-NGQEVDYKKIN 371 Query: 288 W--NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W + NF Q PG N + +I F + Y+HDTP LF R +SGC+R Sbjct: 372 WRKYNESNFNFTLIQSPGDKNFLGRIRITFSNPFQVYLHDTPFKELFKQKRRAFSSGCIR 431 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 + + + L ++L + I + + KT + + + V+ Y +A D I F Sbjct: 432 INDALSLTSYILNK----DKNEIVNFINSNKTLDLVPSKNIYVYIFYFTALVKND-TIYF 486 Query: 406 RDDIYGLDNVHVGII 420 +D+Y D + ++ Sbjct: 487 YEDLYNFDKKILNLM 501 >gi|94498521|ref|ZP_01305077.1| peptidoglycan binding domain protein [Sphingomonas sp. SKA58] gi|94422064|gb|EAT07109.1| peptidoglycan binding domain protein [Sphingomonas sp. SKA58] Length = 484 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 158/369 (42%), Gaps = 37/369 (10%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 +D + P + + +A Y+ I +GGW L S +R+R Sbjct: 137 DLDRWANRLTPPWA--GYETLRQGLARYEAIRDQGGWQSLSASS--------SSDAIRKR 186 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 I D S D + ++ Q R+GL+P+G +D+ TL A+NV VD RI + Sbjct: 187 -IAMEDPSVSP------DEKLADIIQRAQRRYGLNPTGNLDARTLAALNVGVDDRIAAIM 239 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 N+ R + + + + + V VNI AA L E + + G D QTP+L S I+ Sbjct: 240 ANMERWRWMP-RSLPVNRVQVNIAAAVLTLFEGDQPVTSMRAVTGSPDNQTPMLSSSIHS 298 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 I+ NP W +P SI ++++ R L ++ Sbjct: 299 IVVNPPWNVPMSIARRELFPKGRAT---LIRQGYKIV---------------KTPEGGER 340 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 Q G +A+ K +F + Y+HDTP F++ R + GC+R+ + L ++ Sbjct: 341 IVQPAGPNSALGRLKFDFNNPFAVYLHDTPARGKFSSYDRLASHGCIRLEKPVALAEQMV 400 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 +P + I+ ++ KT V L +V V+ +Y +A++ D ++ FR+D YG D + Sbjct: 401 AASPDLN-GQIQNLIDEGKTQRVSLPQDVAVYLLYWTAFANGDGVVSFRNDPYGWDKLLA 459 Query: 418 GIIPLPEDH 426 I Sbjct: 460 QKIEASSSR 468 >gi|197105669|ref|YP_002131046.1| peptidoglycan-binding domain 1 [Phenylobacterium zucineum HLK1] gi|196479089|gb|ACG78617.1| peptidoglycan-binding domain 1 [Phenylobacterium zucineum HLK1] Length = 605 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 99/401 (24%), Positives = 166/401 (41%), Gaps = 26/401 (6%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 G + E + A V ++ + A + +++ + + + ++A+ Sbjct: 205 GPKVGEGELLAFVDPRLLPRAGRGRAALEAAAEAASLQEHLEAALAARNP-IVENLDRAL 263 Query: 83 AFYQDILSRGGWPEL---PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 Y+ G PE+ R L G V LR RL + A+D +E Sbjct: 264 ERYR--AQWSGLPEIFIPAGRELAPGVRDPRVDLLRLRLGL-------PDTGGAYDEVLE 314 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AV+ FQ HGL +G D +TLEA+N R ++ NL R L G R++LV+ Sbjct: 315 GAVRAFQRAHGLPDTGRADRTTLEALNAGAAHYERLVEANLERASALPA-SFGERFILVD 373 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL- 258 A L ++G+ V+ G+ + TP++ ++ ++FNPYW +P ++Q + Sbjct: 374 AAAGQLWYYDHGQQLAAMKVVTGKPSQPTPMMVGMVSHLIFNPYWNVPEDLVQTSIAPKV 433 Query: 259 LRQDPQYLKDNNIHM---IDEKGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMASTKI 313 L Y+++ + + + VDW + RQ PG N M K+ Sbjct: 434 LEHGLGYIEEEGLEVLSDYTADAVVLDPAAVDWRAVAAGALSVRVRQKPGPKNMMGKVKL 493 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y+HDTP F R +SGCVR+ + + L L + + Sbjct: 494 MLPNPLGIYLHDTPHRGDFARSQRLASSGCVRLEDAMSLARLLAGGDKAEAALAV----- 548 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + LA PV+ Y++A D I FR D+YGLD Sbjct: 549 GGEERRIDLAEPAPVYITYLTAAPTSDGFI-FRPDVYGLDA 588 >gi|220920262|ref|YP_002495563.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219944868|gb|ACL55260.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 670 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 157/411 (38%), Gaps = 39/411 (9%) Query: 28 EKPIHASVLDEIINE-SYHSIVNDRFDNFLARVDMG---IDSDIPIISKETIAQTEKAIA 83 I S L +I + A + S P S+ + +A Sbjct: 192 GGRIEPSRLSRLITPKLDLPSADAVLPRLAAAGPGANAVLQSYNP--SQTGYLALKAKLA 249 Query: 84 FYQDILSRGGWPEL---PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + GG P + L G V +R R G + A V Sbjct: 250 ALRS-QRPGGVPMVRLPKGPTLKPGMRDARVPLIRAR---FGLGPADDATAYD--AAVAG 303 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AV+ FQ GL +G+++ T+ A+ P + L N+ R + L +G +V VN Sbjct: 304 AVERFQRERGLAATGILNPETVAALAGPSPGRQEADLLANMERWRWLPA-DLGKTHVWVN 362 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP + V +V + VIVG+ D TP+ + + NP W +P SI++ + + L Sbjct: 363 IPEYKVRVVSGTRVVDEARVIVGKPDSPTPVFSGEMTYAVVNPSWNVPPSILKNEFLPRL 422 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 +DP Y ++ RQ PG+ NA+ K F + + Sbjct: 423 ARDPTYAARLGYEVVRR----------------GNGIAIRQPPGERNALGFIKFMFPNDH 466 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP LF R + GCVRV + +L PTW ++ ++ Sbjct: 467 AVYLHDTPNRALFARSARALSHGCVRVDDPFRFAEVVLG--PTWPTERLKRLIGKG-ERT 523 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYG---LDNVHVGIIPLPEDHP 427 V L ++PVH Y + + + ++ DD+YG + +G+ P P Sbjct: 524 VMLPEKLPVHLAYFTLVADEAGTLRQFDDLYGINARVKMALGLSNEPLPAP 574 >gi|120554149|ref|YP_958500.1| hypothetical protein Maqu_1223 [Marinobacter aquaeolei VT8] gi|120323998|gb|ABM18313.1| conserved hypothetical protein [Marinobacter aquaeolei VT8] Length = 318 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 143/278 (51%), Gaps = 5/278 (1%) Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 + H L+ G+V T AMNVPV +RI Q++VNL R + +L +VLV+I + Sbjct: 41 KQHHLLEEDGIVGRQTRAAMNVPVSVRIDQIRVNLERARWML-HGEAEEFVLVDIAGYRI 99 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 RS ++VG+ R+TP L S I + NP W +P +I +DM+ +R+D Y Sbjct: 100 SYFRPNGEIWRSRIVVGQPYRRTPSLRSMITHLTVNPTWTVPPTIFSEDMLPRIRRDITY 159 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L N+ +++ G+ + +DW P + RQDPG NA+ + F + + Y+HD Sbjct: 160 LDRQNLSVLNFYGQWLDPNSIDWW--NPGGIMLRQDPGPTNALGQVVLRFPNNHLVYLHD 217 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP LF+ +R +SGC+RV+ +++L LL+DT + I V+ +T + L Sbjct: 218 TPSQGLFSRQLRAFSSGCIRVQGVLELAQLLLEDT--DTAADINSVIAEGETRNIHLKRS 275 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 VPV Y + D + FR D+Y D + + P Sbjct: 276 VPVILHYWTVHPGMDRELVFRPDVYQHDASLLRALDRP 313 >gi|42522163|ref|NP_967543.1| putative periplamic protein [Bdellovibrio bacteriovorus HD100] gi|39574694|emb|CAE78536.1| putative periplamic protein [Bdellovibrio bacteriovorus HD100] Length = 505 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 172/391 (43%), Gaps = 27/391 (6%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--R 100 + ++ ++S P + ++ + WP LP + Sbjct: 111 PTALELETALAAAGQNPNVLLESMSPQSPQ--YLALRDSLRKLNNACVNNLWPALPKVKK 168 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS- 159 L LG+ + L+ R+ G P L FD V +AV Q P + Sbjct: 169 TLKLGSKDAILIPLKTRMTQLGY--PMTSLDNVFDDKVVAAVNDIQWNLRFKPDSKISPG 226 Query: 160 -STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE---NGKVGL 215 T + +NV R+RQ+++++ +++ + RY+ +N+ + V+ G + Sbjct: 227 GKTWKYLNVSCQDRMRQIRLDMEKLRWFPQH-FEDRYIFINLAMSYFSLVDKSGGGFYSM 285 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR-----QDPQYLKDNN 270 I GR +R++P + +I I+ NP+WV+P +I ++D + ++ + +Y + Sbjct: 286 SFRTINGRPERKSPTMKDKIVYIVINPFWVVPPTIFREDKVEEIKNLWPWEIREYFDTRH 345 Query: 271 IHMIDEK-GKEVFVEEVDWNSPEPP---NFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 + ++ + +DW + +P N RQ P ++NA+ S K + Y+HDT Sbjct: 346 YQVWNKSFTQRFDPASIDWYNMDPNQDANIYIRQSPHRMNALGSLKFMMTNSYAIYLHDT 405 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT-----RKTTPVK 381 + LF R +SGCVRV +DL +LLK T W R IE + K T V+ Sbjct: 406 NQRELFAEPHRLLSSGCVRVEKPVDLAEYLLKGTE-WDRAAIERYMAKPGEVLDKDTKVQ 464 Query: 382 LATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 L ++PV+ V++++ D I++F +D Y Sbjct: 465 LKQQMPVYMVFLTSQLSSDGILRFAEDSYRQ 495 >gi|213420016|ref|ZP_03353082.1| hypothetical protein Salmonentericaenterica_20520 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 546 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 99/376 (26%), Positives = 156/376 (41%), Gaps = 53/376 (14%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 219 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 276 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 + A+D + AVK FQ GL Sbjct: 277 DNTSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGA 336 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 337 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 394 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 395 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 454 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + + +VDW + P N FR Q PG N++ K S + Y+HDTP Sbjct: 455 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNH 514 Query: 330 ILFNNVVRFETSGCVR 345 LF R +SGCVR Sbjct: 515 NLFQRDARALSSGCVR 530 >gi|332186707|ref|ZP_08388450.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332013359|gb|EGI55421.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 476 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 98/413 (23%), Positives = 158/413 (38%), Gaps = 32/413 (7%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFDNF--LARVDMGIDSDIPIISKETIA 76 L +L + L E+ + N + +D P S Sbjct: 81 LRFASALARGATDPTKLYEVYTIPRPSPDLKAGLANALRSGDLTKWLDGLAPQDS--NYK 138 Query: 77 QTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + A + + + G S + + L+I L P + Sbjct: 139 KLSDAYLKLKQQPQGNDGQVVDTGEAIKPGASDPRMPAIVRELVILDYLTPDAAQGDRYT 198 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + AV+ Q +G+ P G++ + L +N+ R R + V + R++ L E+ Sbjct: 199 PAIGDAVRRMQADYGMKPDGIIGNEALAILNMSDADRARAIAVAMERLRWL-ERTPPATR 257 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNI AA L +GK+ V+VG D +TP L S I R++ NP W +PRSI +K++ Sbjct: 258 IDVNIAAARLSYWRDGKIVDSRRVVVGEPDTETPQLGSPIFRLVANPTWTVPRSIQKKEL 317 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 YL+ NN+ + D Q PG N++ K + Sbjct: 318 AQKGA---GYLRANNMELKDGW--------------------IVQQPGPKNSLGLAKFDM 354 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y+HDTP LF V R + GCVRV + + L KD +T Sbjct: 355 QNDHAIYLHDTPAKPLFAMVQRQRSHGCVRVEDALGFAEMLAKDEGVVD--EWHRARETG 412 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 K T VKL ++PV +Y + KD R+D YG D+ + + Sbjct: 413 KETFVKLPRQIPVRLLYQTVLFDKDGEPIVRNDPYGWDDRVGSALGFKAGKAL 465 >gi|163752572|ref|ZP_02159755.1| hypothetical protein KT99_11874 [Shewanella benthica KT99] gi|161327545|gb|EDP98746.1| hypothetical protein KT99_11874 [Shewanella benthica KT99] Length = 371 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 101/342 (29%), Positives = 172/342 (50%), Gaps = 12/342 (3%) Query: 23 GLSLVEKPIHASVLDEIINESYH-----SIVNDRFDNFLA-RVDMGIDSDIPIISKETIA 76 L+L K + + ++ I +E I + + + + S PI + Sbjct: 33 ALTLEPKELKLARVERIKSELQQFWASLGIPTNAMNMKDSKNLLQQALSLEPI--SKDYL 90 Query: 77 QTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 T I + + + W E + L G++ V + RL GDL +S FD Sbjct: 91 ATSNNIRYLLWLDQKMDWNELVSNSWLKQGDNHSLVPEISRRLNGLGDLGEYDSVSTLFD 150 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A V++AV+ FQ RHGL G++ T+ +N+ R L +N + K + + Sbjct: 151 ANVKNAVRHFQQRHGLKIDGIIGPETIRWINITPVKRAELLAINFIN-KTRYLASIEPIF 209 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +++NIPA LE ++NG+V L+S VIVG+ RQTP+L SRI+ ++ NP W +PRS++ +D+ Sbjct: 210 LIINIPAFELELIDNGQVALQSRVIVGKPYRQTPLLISRISNLVINPSWRVPRSLLIRDL 269 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKI 313 + +R+D Y++ N ++ D +G+ V +W F +R Q PG+ N + K Sbjct: 270 LPKVREDGGYIQAGNFNVFDNQGQMVSKTAQEWQDLAHGRFPYRLVQQPGEGNTLGRYKF 329 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 F ++ + Y+HDT + LF+ R +SGC+R+ N+ L W Sbjct: 330 YFENKYSVYLHDTADKELFDESNRALSSGCIRIENVEGLANW 371 >gi|256425547|ref|YP_003126200.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256040455|gb|ACU63999.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 553 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 167/356 (46%), Gaps = 10/356 (2%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 + + P + A ++ S W LP L +++ Q L RL+ SG Sbjct: 200 LRAQEPQH--NGYQLLKSAWVNFKGKYSEMKWDSLP---LTYTDTAGYRQLLINRLVQSG 254 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 LD S G S + ++ ++ FQ + G T++ MN Q+ +N+ R Sbjct: 255 HLDTSGGHSSD-TSLLKKGIRAFQKEFNMYEDGQAGKKTIQTMNKTFADWEVQVALNMDR 313 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +KL + RY++VN+P +E V++G V + S VIVG +TP+L+SR+ + P Sbjct: 314 WRKLP-DTLPQRYIMVNVPGYRMELVDSGTVAVTSKVIVGAPRTRTPLLNSRMTNFVMYP 372 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--EPPNFIFRQ 300 YW +P SI K+M+ +++D YL N+ +ID G + + V W+ ++ RQ Sbjct: 373 YWRVPFSITIKEMLPAIQRDRAYLAKKNLEIIDSHGNAISPDSVKWSKLSKNYFPYVLRQ 432 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N++ K F ++ Y+HDT LF N R + GCVRV+ L ++L KD Sbjct: 433 MDGIENSLGIMKFNFMNKYAVYLHDTNARGLFANSYRALSHGCVRVQQWDSLSMYLTKDD 492 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 R + + + + VP++F Y +A +D + +DIYG D + Sbjct: 493 TRHPRDSMRRWLANGDKKQIDIQHSVPIYFRYFTAE-GRDGRLVLHEDIYGEDRIL 547 >gi|300022605|ref|YP_003755216.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524426|gb|ADJ22895.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 597 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 98/402 (24%), Positives = 159/402 (39%), Gaps = 37/402 (9%) Query: 37 DEIINESYHSIVNDRFDNFLAR--VDMGIDSDIPIISKETIAQTEKAIAFYQ-------- 86 I + S D D+ + P S + + + ++ + Sbjct: 145 SYIDRQPSLSSAQDILAKISQSQEPDITLREWQP--SADQFLKLKALLSDLRSKQSGEPQ 202 Query: 87 --DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 I RG L + S V L++R + ++G FDA + +AVK Sbjct: 203 DLQIARRG-------SSLQSKSKSPEVATLKKRFGV----ASAQGEETVFDAALVAAVKT 251 Query: 145 FQMRHGLDPSGMVDSSTLEAM----NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 FQ GL G V +T A+ RI + N+ + + ++ +G V VNI Sbjct: 252 FQASAGLRADGFVGPATRAALAGGGPENNADRIAAVIANMEEWRWMPQE-LGATNVFVNI 310 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA S+ ++G V+VG D+QTPI + I+ P W +P SI ++ Sbjct: 311 PAFSIRLTKDGAPVFEDRVVVGTADKQTPIFSKSMKTIVLRPEWNLPDSIKLTALL---- 366 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 + ++ ++ G+ + V+W + Q G NA+ K F +++ Sbjct: 367 -SGRSVEQQGYVVM-RNGRTIDSTRVNWAKANLREYTIFQPSGDDNALGLVKFLFPNKHA 424 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-KTTP 379 Y+HDTP LFN VR + GCVRVRN LL + + ++ +V+ K Sbjct: 425 VYLHDTPSRHLFNERVRLYSHGCVRVRNPQVFAQDLLDIDRGAAAFDVKRLVRKGPKDNN 484 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 V L T +PVH Y + W D Q+ D YG + Sbjct: 485 VTLETPIPVHVGYFTVWVGDDGQPQYFKDYYGHQKRITLALA 526 >gi|332288328|ref|YP_004419180.1| L,D-transpeptidase catalytic domain protein [Gallibacterium anatis UMN179] gi|330431224|gb|AEC16283.1| L,D-transpeptidase catalytic domain protein [Gallibacterium anatis UMN179] Length = 469 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 12/305 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLF-QMRHGLDPSGMVDSSTLEAMNVPVDL-- 171 R R + D + L + + V F Q+ H + + L + Sbjct: 155 RYRAQLPSDEVINAWLDAVSQQQLAAFVAKFDQVNHRYAQTK---KAILSELTKSTADSN 211 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 + +L +NL R++ + + + G + VNIP L NG+ L S VIVG+ R+TP++ Sbjct: 212 VLAKLAINLQRLRFIPDFETG---IFVNIPTFQLHYYRNGEEILSSRVIVGKKARKTPVM 268 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 S+++ I+ NP W P +I +D++ +R+DP Y+ N +ID KG + +DW + Sbjct: 269 MSKLSNIVVNPPWNAPVRLINEDLIPKVRKDPSYIYRNGYTIIDSKGNTIDPYTIDWENM 328 Query: 292 EP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + RQ PG +A+ + K S++ Y+HDTP LFNN R +SGC+RV Sbjct: 329 TAKRFPYRLRQAPGGDSALGNFKFNMPSKDAIYLHDTPNHRLFNNKNRAISSGCIRVNKS 388 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +L LL + WS +V+K+RKTT V + + PV+ Y++AW+ + DI Sbjct: 389 DELATLLLTEA-GWSVDKKAQVLKSRKTTSVPIQSTNPVYLYYVTAWADAQGKVHTVADI 447 Query: 410 YGLDN 414 YG D Sbjct: 448 YGYDQ 452 >gi|332188328|ref|ZP_08390054.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332011641|gb|EGI53720.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 428 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 103/410 (25%), Positives = 167/410 (40%), Gaps = 37/410 (9%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA----RVDMGIDSDIPIISKETI 75 L +L + L +I V+ R A ++D ++S P E Sbjct: 34 LAYAGTLARGAADPTKLFDIYTVPR-PQVDLRAGLARAMQEGKLDEWLESLAP--GDENY 90 Query: 76 AQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + +A + + P +P +P+ G S + + +L+ LD + Sbjct: 91 RRLSQAYVALRKSSNAPPTP-IPDAGKPIEPGKSDPRIPAIAAQLVAFDYLDKAAA-GAV 148 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + +AVK Q +G+DP GM+ + LE +N+ R R + VN+ R++ L E+ Sbjct: 149 YTPPMVAAVKRMQADYGIDPDGMIGTDALEILNLSDADRARAIAVNMERLRWL-ERNPPA 207 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VN+ AA L +GK+ V+VG + TP L S I R++ NP W +PRSI +K Sbjct: 208 TRIDVNLAAARLAYWRDGKLVDTRKVVVGEPETATPQLGSPILRLVANPTWTVPRSIQRK 267 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++ YL+ NN+ D Q PG NA+ K Sbjct: 268 ELAGKGA---GYLRRNNMVWKDGW--------------------IVQQPGPKNALGLVKF 304 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + + + Y+HDTP LF+ V R + GCVRV + + L +D Sbjct: 305 DMQNEQSIYLHDTPAKALFSEVQRQRSHGCVRVEDALGFAEMLARDQ-GVDAEW-HRARA 362 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 T K + V L VPV +Y + R D YG ++ + P Sbjct: 363 TGKESYVALPQPVPVRMLYQTVLFDDSGEPVVRSDPYGWNDRVASALGFP 412 >gi|116750212|ref|YP_846899.1| peptidoglycan binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699276|gb|ABK18464.1| Peptidoglycan-binding domain 1 protein [Syntrophobacter fumaroxidans MPOB] Length = 587 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 97/409 (23%), Positives = 160/409 (39%), Gaps = 40/409 (9%) Query: 25 SLVEKPIHASVLDEIINESYHSIVN-----DRFDNFLARVD--MGIDSDIPIISKETIAQ 77 +L + A V + + ++ D+ R+ + P Sbjct: 189 NLFRVAVEADVKLAELLVRFSGQMDPFSGEDQVKALSGRIPMSDYLKRLEPRSP--HYRP 246 Query: 78 TEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 A+A Y+D+ + ++ + G S +V+ L++RL ++ FDA Sbjct: 247 LLNALARYRDLAANTTQQQVRAPSTMRPGESGNAVRDLQKRLRQEDFY--RGEITGTFDA 304 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + AVK FQ H ++P G V T E +N+P + + + ++ + + RYV Sbjct: 305 ATQQAVKRFQAAHQIEPDGAVGQRTREWLNMPFKQKAEMIAHGINLLR-QSQTRRSDRYV 363 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVD-------------RQTPILHSRINRIMFNPY 243 +NIP +LE ++G+ VIVG+ QTP L S I +++ NP Sbjct: 364 RINIPQFALEYYKDGQSLSSHRVIVGKASGKKVKVLGKWMRENQTPTLTSNIEQVIINPR 423 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + I + ++ A DPQY + + W Q PG Sbjct: 424 WYVSDRI-RLELDAQAGSDPQYFARHGYVQMA--------SLYPW-----GQPRLFQKPG 469 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + K EF + Y+HDT + LF R + GC+RV L LLKD Sbjct: 470 PKNPLGQIKFEFPNPYAVYLHDTNQKSLFQRTRRDFSHGCIRVEKAKHLAHLLLKDDQNP 529 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 E + + + +KLAT VP+ Y+ +D + F D YG Sbjct: 530 LADKTEPYLSSDRQLFIKLATPVPIIIEYLPVSCNEDGQVIFFGDPYGW 578 >gi|327405461|ref|YP_004346299.1| ErfK/YbiS/YcfS/YnhG family protein [Fluviicola taffensis DSM 16823] gi|327320969|gb|AEA45461.1| ErfK/YbiS/YcfS/YnhG family protein [Fluviicola taffensis DSM 16823] Length = 535 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 96/407 (23%), Positives = 171/407 (42%), Gaps = 40/407 (9%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---- 101 + + D + +D I++ PI+S + K++A + G W Sbjct: 130 RLAQLQQDLKVGFLDTSINNYRPIVS-IDVKSLSKSVAQMDTVKKWGTWLANMGPKRREY 188 Query: 102 --LHLG-----------NSSVSVQRL-----------RERLIISGDLDPSKGLSVAFDAY 137 L +G N + L +E LI G LDP K +F Sbjct: 189 RYLAIGLYQFASKKTLSNIHFEIPALVEDSLRCVELSKESLIDKGYLDPKKNDDESF--- 245 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 A+ FQ +GL G++ T +++N V + + +++ R + RY+ Sbjct: 246 -WDAMSRFQADNGLKADGVIGIYTRKSLNESVRFKCHRAILSMERWRW--RAPFPDRYLW 302 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNIP L N + V+VG+ + QTP L S++ I+ PYW P +I K+ + Sbjct: 303 VNIPEYKLRLFYNDSLLSEHRVVVGKPENQTPELSSKLRAIISLPYWTQPHTIASKEFLP 362 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEF 315 ++ + Y NN + + EV ++W + NF FR Q+PG NA+ K EF Sbjct: 363 AIQNNSNYAAKNNYKVYRGE-TEVDPTTINWKRYKEKNFPFRVRQEPGSDNALGLVKFEF 421 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL--KDTPTWSRYHIEEVVK 373 ++ Y+HDTP FN +R + GC+R L ++L D +R ++ ++ Sbjct: 422 NNKFGVYIHDTPSKGFFNKDIRAYSHGCMRCELPDSLARFILTRDDRQKMTRDSLDTLIA 481 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++ + L + + YI+ + + F D+Y D ++ ++ Sbjct: 482 RKEHFTIHLHKPIQLQVDYITVTTNGKGRLLFYPDVYDRDEKYLKMM 528 >gi|256820616|ref|YP_003141895.1| ErfK/YbiS/YcfS/YnhG family protein [Capnocytophaga ochracea DSM 7271] gi|256582199|gb|ACU93334.1| ErfK/YbiS/YcfS/YnhG family protein [Capnocytophaga ochracea DSM 7271] Length = 571 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 172/392 (43%), Gaps = 22/392 (5%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 +D +++ + + + + + + + I + + + I Sbjct: 186 IDMLLHLGDNDDLEAKLASLYPKGEQYRRMKY-----KYIQLKNQPLDTIRIIKFSDP-- 238 Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G + V+ LR L G K D+ + A+K FQ +GL P G Sbjct: 239 ----KNFVYGYTDPEVESLRNALAKKGFGSVPKIDPQEVDSTLIWALKRFQRSNGLIPDG 294 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + TL +N+ + L++N+ R++ +G Y++VNIP L + Sbjct: 295 SLGIQTLNRLNMNKARQRDLLRLNMERMRVFNN-DLGDDYIIVNIPDYKLFLYHKDSLIY 353 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHM 273 ++ V+VGR TPI I I F P W +P+SII+K+M+ + ++DP+ K+ M Sbjct: 354 QTKVVVGRAQSSTPIFTDSIRSIEFRPTWSVPQSIIRKEMIPQMLLQEDPERYKNRGYTM 413 Query: 274 IDEKGKEVFVEEVDWNS--PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + GK + EVDW + F F + P + N++ K + + Y+HDTP L Sbjct: 414 YE-NGKVIDPLEVDWTNPLVHKRAFYFVEAPSERNSLGLVKFLLNNNMSIYLHDTPSKYL 472 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDT---PTWSRYHIEEVVKTRKTT--PVKLATEV 386 F R + GCVRV+N L +LLK+ +W+ +++ + K VKL T+ Sbjct: 473 FEREQRALSHGCVRVQNPSQLAYYLLKNEGDGKSWTEEKVKDFMNNNKRNQYRVKLNTKY 532 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 ++ +Y + K ++DIY LDN + Sbjct: 533 MINILYYTISVDKKGEATIKNDIYDLDNEQLK 564 >gi|315223727|ref|ZP_07865577.1| peptidoglycan binding domain protein [Capnocytophaga ochracea F0287] gi|314946302|gb|EFS98301.1| peptidoglycan binding domain protein [Capnocytophaga ochracea F0287] Length = 571 Score = 275 bits (704), Expect = 8e-72, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 172/392 (43%), Gaps = 22/392 (5%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 +D +++ + + + + + + + I + + + I Sbjct: 186 IDMLLHLGDNDDLEAKLASLYPKGEQYRRMKY-----KYIQLKNQPLDTIRIIKFSDP-- 238 Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G + V+ LR L G + D+ + A+K FQ +GL P G Sbjct: 239 ----KNFVYGYTDPEVESLRNALAKKGFRSVPEIDPQEVDSTLIWALKRFQRSNGLIPDG 294 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + TL +N+ + L++N+ R++ +G Y++VNIP L + Sbjct: 295 SLGIQTLNRLNMNKARQRDLLRLNMERMRVFNN-DLGDDYIIVNIPDYKLFLYHKDSLIY 353 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHM 273 ++ V+VGR TPI I + F P W +P+SII+K+M+ + ++DP+ K+ M Sbjct: 354 QTKVVVGRAQTSTPIFTDSIRSVEFRPTWSVPQSIIKKEMIPQMLLQEDPEKYKNRGYTM 413 Query: 274 IDEKGKEVFVEEVDWNS--PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + G+ + EVDW + F F + P + N++ K + + Y+HDTP L Sbjct: 414 YE-NGRVIDPLEVDWTNPLVHKRAFYFVEAPSERNSLGLVKFLLNNNMSIYLHDTPSKYL 472 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDT---PTWSRYHIEEVVKTRKTT--PVKLATEV 386 F R + GCVRV+N L +LLK+ +W+ +++ + K VKL T+ Sbjct: 473 FEREQRALSHGCVRVQNPSQLAYYLLKNEGDGKSWTEEKVKDFMNNNKRNQYRVKLNTKY 532 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 ++ +Y + K ++DIY LDN + Sbjct: 533 MINILYYTISVDKKGEATIKNDIYDLDNEQLK 564 >gi|170741335|ref|YP_001769990.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195609|gb|ACA17556.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 654 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 151/341 (44%), Gaps = 33/341 (9%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 LP P L G V +R R + S + A+DA V A++ FQ GL + Sbjct: 260 RLPKGPVLKPGMRDARVPLIRARFGL-----GSADDATAYDAAVAGAIERFQRERGLAAT 314 Query: 155 GMVDSSTLEAMNVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++D T+ A+ P + L N+ R + L + +G +YV VNIP + +E G+V Sbjct: 315 GILDPRTVAALAGPSPGRQEADLLANMERWRWLPAE-LGRKYVWVNIPDLKVRVMEGGRV 373 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 + VIVG+ D TPI ++ + NP W +P SI++ + + L +DP Y + Sbjct: 374 VDEARVIVGKPDSPTPIFSGEMSYAVVNPSWNVPPSILKNEFLPRLARDPSYAARLGYQV 433 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + RQ PG+ NA+ K F + + Y+HDTP LF Sbjct: 434 VRKGNSI----------------AVRQPPGERNALGFIKFMFPNEHAVYLHDTPNRTLFA 477 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 R + GCVRV + +L PTW +++++ V L ++PVH Y Sbjct: 478 RGARALSHGCVRVDDPFRFAEVVLG--PTWPTERLKKLIGKG-ERTVMLPEKLPVHLAYF 534 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPL------PEDHPI 428 + + + ++ +D+YG++ + L P + Sbjct: 535 TLVADEAGGLREAEDLYGINARVKVALGLSNEALPPSPEAL 575 >gi|170749212|ref|YP_001755472.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170655734|gb|ACB24789.1| peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 674 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 96/410 (23%), Positives = 158/410 (38%), Gaps = 40/410 (9%) Query: 22 MGLSLVEKPIHASVLDEIINE----SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 I+ + + +I + V + D A+ + + P Sbjct: 191 YARDARGGRINLASISRLITPHLDLPAGNDVLAKLDEAGAKAGEALQAYNPATP--GYLA 248 Query: 78 TEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERLIISGD----LDPSKGLS 131 + +A + P LP P L +G V LR + LD G Sbjct: 249 LKARLAALRGPAPTAVKPLRLPAGPVLRVGMRDARVPLLRAHFNLENRPAATLDKGPGEP 308 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-----NVPVDLRIRQLQVNLMRIKKL 186 +D+ V AV FQ GL +G ++ T+ A+ +L VN+ R + L Sbjct: 309 EEYDSGVADAVAKFQRGRGLPGNGTLNVQTVLALADAGRTARPTGGEAELIVNMERWRWL 368 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +G Y+LVN+P L A G + + VIVG+ + +TP+ + + NP W + Sbjct: 369 P-GDLGSDYILVNVPEYRLRAYRGGVMRDEARVIVGKPESRTPLFSGMMEYAVVNPSWYV 427 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI+ K M L ++ G RQ PG+ N Sbjct: 428 PPSIL-KTMAPKLAGYGGK-TWGGYEVVRRGGHI----------------SLRQPPGERN 469 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ K F +++ Y+HDTP LF+ R + GCVRV + L +L P WS Sbjct: 470 ALGFIKFMFPNQHAVYLHDTPNRSLFSASKRDFSHGCVRVDDPFRLADVVL---PNWSED 526 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 +++++ ++L ++PVH Y +A+ + D+YG D Sbjct: 527 RLKKLIGKG-ERTIRLPEKLPVHLAYFTAFVDDGGTYRTLPDLYGYDAPM 575 >gi|121591699|ref|ZP_01678927.1| putative peptidoglycan binding domain protein [Vibrio cholerae 2740-80] gi|153819645|ref|ZP_01972312.1| putative peptidoglycan binding domain protein [Vibrio cholerae NCTC 8457] gi|121546440|gb|EAX56672.1| putative peptidoglycan binding domain protein [Vibrio cholerae 2740-80] gi|126509804|gb|EAZ72398.1| putative peptidoglycan binding domain protein [Vibrio cholerae NCTC 8457] Length = 459 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 155/334 (46%), Gaps = 15/334 (4%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSR 91 LD+ + + +A + + + + + Q +A I Sbjct: 132 GQLDQPLAPPSE---EAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN 188 Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMR 148 + L G+ + L +RL + LD + L+ +DA +E +K FQ Sbjct: 189 EVALYEQMERLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKM 247 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ T++ +N V R+ L +N RI+ Q+ ++VN+P ++ Sbjct: 248 HGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYW 305 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ S V+VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL + Sbjct: 306 DAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLAN 365 Query: 269 NNIHMIDEKG--KEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +++ +I + + +DW + EP + RQ G NA+ + K + Y+H Sbjct: 366 HHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLH 425 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 DTP LFNN R +SGC+RV N LL Sbjct: 426 DTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLA 459 >gi|42524313|ref|NP_969693.1| putative amidase [Bdellovibrio bacteriovorus HD100] gi|39576522|emb|CAE80686.1| putative amidase [Bdellovibrio bacteriovorus HD100] Length = 510 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 92/430 (21%), Positives = 176/430 (40%), Gaps = 31/430 (7%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIPIISKET--I 75 L M L + + + +F S + +++ + Sbjct: 82 FLRMLRDLQIGSVDPVNAGRDVKLVRRDFLTPKQFQMIALAAGNNAQSFVDLVAPQNAPY 141 Query: 76 AQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + AI G W ++ PL L + ++ ++ RL + G + + Sbjct: 142 IGVQAAIQKIYPHCIDGTWQDIVPVTTPLRLYSIHPVIREIKSRLALLGYTMRN--MDDR 199 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSS--TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FD + AV Q + P G + ++V R+RQ+QV++ +++ Q Sbjct: 200 FDGDLLKAVTDIQWNMRIRPDGEISPKGKVWSFLSVSCMDRVRQIQVDMEKMRWFP-QYF 258 Query: 192 GLRYVLVNIPAASLEAVENGKVG---LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +Y+ VN+ + ++ + I GR R++P + I ++ NP+WV+P Sbjct: 259 EKKYIFVNLAMSYFIMMDQSTDWPRVMSFRTINGRPARKSPTMRDEIVNVIINPFWVVPP 318 Query: 249 SIIQKDMMALLR-----QDPQYLKDNNIHMIDEKGK-EVFVEEVDWNSPEPP----NFIF 298 +I +D + L+ Q +Y ++ + +V +DW + I Sbjct: 319 TIFYEDKVNDLKDLTSEQIREYFDSHHYEAWVGGFRRKVDPTTIDWKGIAAGTVDPDIII 378 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 RQ P NA+ K + + Y+HDT + LF+ +R +SGCVR+ +DL +LL+ Sbjct: 379 RQLPHLGNALGVLKFDLTNSFAIYLHDTNQRELFDTPMRQLSSGCVRLEKPLDLAEYLLE 438 Query: 359 DTPTWSRYHIEEVVKTR-----KTTPVKLA--TEVPVHFVYISAWSPKDSIIQFRDDIYG 411 DTP W R I ++ K T + + +PV+ Y+++ D +++F DDIYG Sbjct: 439 DTP-WDRQTIASMMARPGEVVAKPTEIPVPSYKRMPVYTAYLTSMMNSDEVVRFVDDIYG 497 Query: 412 LDNVHVGIIP 421 + + + Sbjct: 498 QNPAVLRHLD 507 >gi|332885569|gb|EGK05815.1| hypothetical protein HMPREF9456_02079 [Dysgonomonas mossii DSM 22836] Length = 592 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 94/444 (21%), Positives = 186/444 (41%), Gaps = 32/444 (7%) Query: 5 LKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID 64 L++ L + G + K ++ D I + + + I Sbjct: 140 LELTSSLSAVKYIKGMKYGF-INPKKLYKKDYDISILTPDSTFYQEIYKELKEDPISSII 198 Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 + +P + +K ++ +G LG+ + + + +RL ++G+ Sbjct: 199 NSVPT--DAIYLRLQKEYQELKEKKEQGFKTITSTATYKLGDKNKHISEIAQRLALTGEY 256 Query: 125 DPSKGLSVA-------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 ++ S+ D + A+ +F+ ++ + T++A+N P+D + +LQ Sbjct: 257 VIAESDSIRDDSSEMMLDENLLEAINIFRKKNSYPEEKEIGKLTIDALNRPLDYYLEKLQ 316 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 N+ R + + + +++ VN+ +A L A E + L V VG +TP+L S I+ Sbjct: 317 ANMERYRWKMTKAKHNKHIEVNVASAYLTATEQDSLPLIMKVCVGTATNKTPLLQSDISY 376 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PN 295 + NP W IP SI QK++ L ++DP Y+K +N+ + GKEV + ++W +P + Sbjct: 377 LNLNPIWNIPTSIAQKEVAVLQKKDPTYIKRHNMKLY-RNGKEVDITTINWKEVDPSKFS 435 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + RQ PG+ NA+ K F + + Y+HDTP F R + GCVRV+ DL + Sbjct: 436 YTIRQSPGESNALGLVKFMFSNAFSVYLHDTPSKAAFGRKNRAVSHGCVRVQKPFDLAFF 495 Query: 356 LLKDTPTW-------------SRYHIEEVVKTRKTTP-----VKLATEVPVHFVYISAWS 397 + T + + + ++ + Y + + Sbjct: 496 CMSTTSDDIYKDRLFYSIDKQPISKAGKKLAQENKLKKLPDILNPKEKISLFIDYYTVYM 555 Query: 398 -PKDSIIQFRDDIYGLDNVHVGII 420 P D ++ + DD+Y D+ + + Sbjct: 556 YPDDDMLYYADDVYEYDSAILNAL 579 >gi|46202872|ref|ZP_00052464.2| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 265 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 98/248 (39%), Positives = 154/248 (62%), Gaps = 4/248 (1%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 ++R++ +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I Sbjct: 1 MIRLRSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQIN 59 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 FNP W +P SI++KD++ +++DP YL DN I ++ G+E+ + V+W S E + +R Sbjct: 60 FNPTWTVPASIVKKDLIPKMQKDPNYLTDNKIRILSG-GQEISPKSVNWFSDEGTRYTYR 118 Query: 300 QDPGKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 QD G N+M +I + +MHDT +F + RF +SGCVRV+N+ + WLLK Sbjct: 119 QDSGADFNSMGVVRINIPNPYGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLK 178 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV- 417 DTP W R H+E+ V++ + L+ VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 179 DTPGWDRAHVEQAVESGQRIDATLSQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNVP 238 Query: 418 GIIPLPED 425 I P Sbjct: 239 STIEAPTP 246 >gi|315633943|ref|ZP_07889232.1| conserved hypothetical protein [Aggregatibacter segnis ATCC 33393] gi|315477193|gb|EFU67936.1| conserved hypothetical protein [Aggregatibacter segnis ATCC 33393] Length = 487 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 130/244 (53%), Gaps = 7/244 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ L + G + VNIP+ L +G+V L S VIVG+ R+TP++ Sbjct: 231 LHRLAINAQRLRILPVFQDG---IFVNIPSYELNYYRDGQVILSSRVIVGQSSRKTPVMS 287 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SR++ ++ NP W P +I +D++ +R+DP Y+ + +ID G + +DW + Sbjct: 288 SRLSNVVVNPPWNAPTRLINEDIIPKVRKDPSYIYRHGYTIIDGSGNTIDPYTIDWENMS 347 Query: 293 P--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + RQ P +A+ + K S Y+HDTP+ LF N R +SGCVRV Sbjct: 348 AKRFPYRLRQAPSDNSALGNYKFNMPSSEAIYLHDTPKRNLFGNKNRALSSGCVRVEKSD 407 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L LLK+ W+ + V+K++KTT + ++ PV Y++AW KD + DIY Sbjct: 408 QLATILLKEA-GWTDETKQNVLKSKKTTSAGIKSDNPVFLYYVTAWVDKD-QVHTLPDIY 465 Query: 411 GLDN 414 G D Sbjct: 466 GYDK 469 >gi|52424877|ref|YP_088014.1| hypothetical protein MS0822 [Mannheimia succiniciproducens MBEL55E] gi|52306929|gb|AAU37429.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 486 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 19/307 (6%) Query: 122 GDLDPSKGLSVAFDAYVESAVKL---FQMRHGLDPSGMVDSSTLEAMNVP--------VD 170 G G + SAVK F + L + + T++ + Sbjct: 173 GYKPAKPGETDV--EEWLSAVKNGQNFAYVNSLTTNNSIYQQTIDKIGSSDFDDDKSVNS 230 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + +L +N R++ + G + VNIP+ L + ++ L S VIVG+ +R+TP+ Sbjct: 231 AILYKLALNAQRLRVIPNFSNG---IFVNIPSYQLNYYRDNQLILNSRVIVGKKERRTPV 287 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 ++S+++ ++ NP W P +I +D++ ++++P YL + ++D KG +V ++W + Sbjct: 288 MYSKLSNVVVNPPWNAPTRLINEDIVPKIKKNPGYLSAHGYSILDSKGNKVNPNSINWAA 347 Query: 291 P-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + RQD G +A+ K S + Y+HDTP LFN R +SGCVRV Sbjct: 348 IGSKFPYRIRQDAGDNSALGRFKFNMPSSDAIYLHDTPNHNLFNKQDRALSSGCVRVEKS 407 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 L LLK+ WS + V+ ++KTT + ++ PV+ Y++AW ++ + DI Sbjct: 408 NQLASILLKEA-GWSEDKKQRVLNSKKTTSAPIYSDNPVYLYYVTAWV-ENGQVNTLPDI 465 Query: 410 YGLDNVH 416 YG D V Sbjct: 466 YGYDIVQ 472 >gi|261868418|ref|YP_003256340.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413750|gb|ACX83121.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 502 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 90/290 (31%), Positives = 144/290 (49%), Gaps = 22/290 (7%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G + F + V L +G +D + + + +L +N R++ L Sbjct: 216 SGENPLFKQTLAKVV-------NLILNGKLDKNGINE--------LHRLAINAQRLRILP 260 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 E G + VNIP+ L +GK+ L S VIVG R+TP++ SR++ ++ NP W P Sbjct: 261 EFDNG---IFVNIPSYQLNYYRDGKLVLNSRVIVGTDKRKTPVMFSRLSNVVVNPPWNAP 317 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PNFIFRQDPGKI 305 +I +D++ +R+DP Y+ N +ID KG + +DW + + RQ P Sbjct: 318 TRLINEDIIPKVRRDPSYIYRNGYTIIDGKGNTIDPYTIDWENMTAKKFPYRLRQVPSDN 377 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 +A+ + K S + Y+HDTP+ LF N R +SGCVRV +L LLK+ W+ Sbjct: 378 SALGNYKFNMPSSDAIYLHDTPKRSLFGNKRRDLSSGCVRVEKSEELATVLLKEA-GWTA 436 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + V+K+RKTT V + + PV Y++AW K+ + D+YG D Sbjct: 437 ERKQSVLKSRKTTSVTVKSNNPVFLYYVTAWVDKE-QVHTLPDVYGYDKA 485 >gi|251792219|ref|YP_003006940.1| periplasmic protein [Aggregatibacter aphrophilus NJ8700] gi|247533607|gb|ACS96853.1| periplasmic protein [Aggregatibacter aphrophilus NJ8700] Length = 506 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 86/276 (31%), Positives = 138/276 (50%), Gaps = 15/276 (5%) Query: 150 GLDPSGMVDSSTLEAM--------NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 L + TL+ + + + +L +N R++ L + G + VNIP Sbjct: 220 NLSSDNPLFKQTLDKVKALIVKGVDKNKTTELYRLAINAQRLRILPTFQNG---IFVNIP 276 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + L +G+ L S VIVG+ +R+TP++ SR++ ++ NP W P +I +D++ +R+ Sbjct: 277 SYQLTYYRDGEAVLNSRVIVGKTERKTPVMFSRLSNVVVNPSWNAPTRLINEDIIPKVRK 336 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRN 319 DP Y+ N +ID G + +DW + + RQ P +A+ + K S + Sbjct: 337 DPSYIYRNGYTIIDGNGNTIDPYTIDWENMTAKKFPYRLRQAPSDNSALGNYKFNMPSSD 396 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP+ LF N R +SGCVRV L LLK+ WS + V+K+RKTT Sbjct: 397 AIYLHDTPKRSLFGNKKRDLSSGCVRVEKSDQLATILLKEA-GWSDERKQNVLKSRKTTS 455 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + ++ PV Y++AW KD + DIYG D Sbjct: 456 ASIKSDNPVFLYYVTAWVDKD-QVHTLPDIYGYDKA 490 >gi|261493954|ref|ZP_05990462.1| hypothetical protein COK_2352 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310386|gb|EEY11581.1| hypothetical protein COK_2352 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 518 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 131/260 (50%), Gaps = 8/260 (3%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + E +L +N R++ + G + VNIP+ L +G + L+S Sbjct: 248 GKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGNLALQS 304 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VIVGR DR+TP++ S+++ ++ NP W +P SI+ KD++ L +DP Y + ++D Sbjct: 305 KVIVGREDRRTPVMDSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPGYADRASFEILDSS 364 Query: 278 GKEVFVEEVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G ++ V+W+ + + RQ G +A+ K S + Y+HDTP LF Sbjct: 365 GNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFGK 424 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R +SGCVRV +L LLK+ W +V+ ++KTT ++ ++ PV+ Y++ Sbjct: 425 TGRALSSGCVRVEKSDELATILLKEA-GWGSDKKNQVLGSKKTTSAQIRSDNPVYLYYVT 483 Query: 395 AWSPKDSIIQFRDDIYGLDN 414 AW + +Q DIY D Sbjct: 484 AWV-EGGKVQTLPDIYNFDA 502 >gi|261494761|ref|ZP_05991240.1| hypothetical protein COI_0554 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309578|gb|EEY10802.1| hypothetical protein COI_0554 [Mannheimia haemolytica serotype A2 str. OVINE] Length = 510 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 131/260 (50%), Gaps = 8/260 (3%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + E +L +N R++ + G + VNIP+ L +G + L+S Sbjct: 240 GKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGNLALQS 296 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VIVGR DR+TP++ S+++ ++ NP W +P SI+ KD++ L +DP Y + ++D Sbjct: 297 KVIVGREDRRTPVMDSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPGYADRASFEILDSS 356 Query: 278 GKEVFVEEVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G ++ V+W+ + + RQ G +A+ K S + Y+HDTP LF Sbjct: 357 GNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFGK 416 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R +SGCVRV +L LLK+ W +V+ ++KTT ++ ++ PV+ Y++ Sbjct: 417 TGRALSSGCVRVEKSDELATILLKEA-GWGSDKKNQVLGSKKTTSAQIRSDNPVYLYYVT 475 Query: 395 AWSPKDSIIQFRDDIYGLDN 414 AW + +Q DIY D Sbjct: 476 AWV-EGGKVQTLPDIYNFDA 494 >gi|296531943|ref|ZP_06894738.1| peptidoglycan-binding domain 1 protein [Roseomonas cervicalis ATCC 49957] gi|296267730|gb|EFH13560.1| peptidoglycan-binding domain 1 protein [Roseomonas cervicalis ATCC 49957] Length = 321 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 150/319 (47%), Gaps = 8/319 (2%) Query: 110 SVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V LR RL + +DA +E+AV+ +Q H L+ G V T MN P Sbjct: 3 RVPALRARLAAEDAELAAAPDGGALYDAPLEAAVRRWQAAHSLEVDGRVGPMTQRLMNRP 62 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + Q++V + + + G R + VNIP L ++ + V+VG+V R T Sbjct: 63 AGAVVGQIRVAMDQRRGRGAAAPGRR-IEVNIPEFRLRVMDGARQVTAMNVVVGKVARAT 121 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEE 285 P L R+ + FNP W +P ++D++ R+DP+ + + + G E V Sbjct: 122 PPLAVRMTAVQFNPPWGVPERNAREDLLPKFRRDPRAMMEKGFRLFTVVGGERVEVDPMT 181 Query: 286 VDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 VDW S P +I RQD ++A+ K + ++ Y+HDTP+ LF R +SGC Sbjct: 182 VDWASVNPQRFPYIVRQDASDVSALGRLKFVMPNGDDIYLHDTPDRHLFGRADRALSSGC 241 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 +R+ ++L +L+ P W+R + + +R+T+ + L PV Y + + Sbjct: 242 IRLSQPMELLDLVLEGVPGWNRERAQRALDSRQTSFLSLPRAWPVRLHYDTVVV-EQGQA 300 Query: 404 QFRDDIYGLDNVHVGIIPL 422 + DIYGLD ++ ++ Sbjct: 301 RLLSDIYGLDAAYLRLLDQ 319 >gi|254363167|ref|ZP_04979216.1| hypothetical protein MHA_2750 [Mannheimia haemolytica PHL213] gi|110735335|gb|ABG89238.1| periplasmic protein precursor [Mannheimia haemolytica] gi|153095061|gb|EDN75612.1| hypothetical protein MHA_2750 [Mannheimia haemolytica PHL213] Length = 510 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 132/260 (50%), Gaps = 8/260 (3%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + E +L +N R++ + G + VNIP+ L +G + L+S Sbjct: 240 GKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGNLALQS 296 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VIVGR DR+TP+++S+++ ++ NP W +P SI+ KD++ L +DP Y + ++D Sbjct: 297 KVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPGYADRASFEILDSS 356 Query: 278 GKEVFVEEVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G ++ V+W+ + + RQ G +A+ K S + Y+HDTP LF Sbjct: 357 GNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFGK 416 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R +SGCVRV +L LLK+ W +V+ ++KTT ++ ++ PV+ Y++ Sbjct: 417 TGRALSSGCVRVEKSDELATILLKEA-GWGSDKKNQVLGSKKTTSAQIRSDNPVYLYYVT 475 Query: 395 AWSPKDSIIQFRDDIYGLDN 414 AW + +Q DIY D Sbjct: 476 AWV-EGGKVQTLPDIYNFDA 494 >gi|166012265|ref|ZP_02233163.1| YcbB [Yersinia pestis biovar Antiqua str. E1979001] gi|165988829|gb|EDR41130.1| YcbB [Yersinia pestis biovar Antiqua str. E1979001] Length = 252 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 121/239 (50%), Gaps = 8/239 (3%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ L ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ N Sbjct: 1 RLRILPGHV--DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVN 58 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWN--SPEPPNF 296 P W +P S++++D++ R D Y + N ++ + +DW+ SP + Sbjct: 59 PPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPY 118 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG N++ K S + Y+HDTP LF +R +SGCVRV DL L Sbjct: 119 RLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANML 178 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L+D W+ + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 179 LQDA-GWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 236 >gi|293392039|ref|ZP_06636373.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952573|gb|EFE02692.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 502 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 140/268 (52%), Gaps = 15/268 (5%) Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 L +G +D + + + +L +N R++ L E G + VNIP+ L Sbjct: 231 NLILNGKLDKNGINE--------LYRLAINAQRLRILPEFANG---IFVNIPSYQLNYYR 279 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +GK+ L S VIVG R+TP++ SR++ ++ NP W P +I +D++ +R+DP Y+ N Sbjct: 280 DGKLVLNSRVIVGTDKRKTPVMFSRLSNVVVNPPWNAPTRLINEDIIPKVRRDPSYIYRN 339 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTP 327 +ID KG + +DW + F + RQ P +A+ + K S + Y+HDTP Sbjct: 340 GYTIIDGKGNTIDPYTIDWENMTAKKFPYRLRQVPSDNSALGNYKFNMPSSDAIYLHDTP 399 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 + LF N R +SGCVRV +L LLK+ W+ + V+K+RKTT V + + P Sbjct: 400 KRSLFGNKRRDLSSGCVRVEKSEELATVLLKEA-GWTAERKQSVLKSRKTTSVTVKSNNP 458 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNV 415 V Y++AW K+ + D+YG D Sbjct: 459 VFLYYVTAWVDKE-QVHTLPDVYGYDKA 485 >gi|260914201|ref|ZP_05920674.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631834|gb|EEX50012.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 511 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 8/260 (3%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + + E + ++ ++ +N R++ + E G + VNIP+ LE +G++ L Sbjct: 241 LTALVKEDADKTALSKMYKMAINAQRLRVIPEFTDG---LFVNIPSYQLEYYRDGQLVLT 297 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 S VIVG+ R+TP+++S+++ ++ NP W P +I +D++ +R+DP Y+ N +ID Sbjct: 298 SRVIVGKKARKTPVMYSKLSNVVVNPPWNAPVRLINEDIIPKVRKDPSYIYRNGYTIIDG 357 Query: 277 KGKEVFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 KG V +DW + + RQ PG +A+ + K S + Y+HDTP LF Sbjct: 358 KGNSVDPYTIDWENMTAKKFPYRLRQAPG-DSALGNFKFNMPSSDAIYLHDTPNRGLFGK 416 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R +SGCVRV L LLK+ WS V+++RKTT +A++ PV Y++ Sbjct: 417 KDRALSSGCVRVEKSDQLATILLKEA-GWSEERKRSVLQSRKTTSANVASDNPVFLYYVT 475 Query: 395 AWSPKDSIIQFRDDIYGLDN 414 W K DIYG D+ Sbjct: 476 MWVNK-GQTHTLPDIYGYDS 494 >gi|307244929|ref|ZP_07527026.1| hypothetical protein appser1_1410 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253883|ref|ZP_07535735.1| hypothetical protein appser9_1410 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258337|ref|ZP_07540078.1| hypothetical protein appser11_1400 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854094|gb|EFM86302.1| hypothetical protein appser1_1410 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863087|gb|EFM95029.1| hypothetical protein appser9_1410 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867521|gb|EFM99368.1| hypothetical protein appser11_1400 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 521 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + +L +N R++ + G + VNIP+ L +G++ L+S VIVGR Sbjct: 258 ATATGNDTFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRD 314 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ Sbjct: 315 DRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPR 374 Query: 285 EVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 V+W + + RQ G +A+ K S + Y+HDTP LF R +S Sbjct: 375 SVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSS 434 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ Sbjct: 435 GCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENG 492 Query: 402 IIQFRDDIYGLD 413 + DIY D Sbjct: 493 KVYTLPDIYKFD 504 >gi|303251945|ref|ZP_07338116.1| hypothetical protein APP2_0272 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247104|ref|ZP_07529156.1| hypothetical protein appser2_1030 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307256146|ref|ZP_07537933.1| hypothetical protein appser10_1510 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262708|ref|ZP_07544336.1| hypothetical protein appser13_1350 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|302649375|gb|EFL79560.1| hypothetical protein APP2_0272 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856353|gb|EFM88504.1| hypothetical protein appser2_1030 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306865327|gb|EFM97223.1| hypothetical protein appser10_1510 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871963|gb|EFN03679.1| hypothetical protein appser13_1350 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 521 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + +L +N R++ + G + VNIP+ L +G++ L+S VIVGR Sbjct: 258 ATATGNDTFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRD 314 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ Sbjct: 315 DRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPR 374 Query: 285 EVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 V+W + + RQ G +A+ K S + Y+HDTP LF R +S Sbjct: 375 SVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSS 434 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ Sbjct: 435 GCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENG 492 Query: 402 IIQFRDDIYGLD 413 + DIY D Sbjct: 493 KVYTLPDIYKFD 504 >gi|303249825|ref|ZP_07336029.1| hypothetical protein APP6_1233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251648|ref|ZP_07533553.1| hypothetical protein appser6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651392|gb|EFL81544.1| hypothetical protein APP6_1233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860845|gb|EFM92853.1| hypothetical protein appser6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 521 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + +L +N R++ + G + VNIP+ L +G++ L+S VIVGR Sbjct: 258 ATATGNDTFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRD 314 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ Sbjct: 315 DRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPR 374 Query: 285 EVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 V+W + + RQ G +A+ K S + Y+HDTP LF R +S Sbjct: 375 SVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSS 434 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ Sbjct: 435 GCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENG 492 Query: 402 IIQFRDDIYGLD 413 + DIY D Sbjct: 493 KVYTLPDIYKFD 504 >gi|307260578|ref|ZP_07542270.1| hypothetical protein appser12_1530 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869655|gb|EFN01440.1| hypothetical protein appser12_1530 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 521 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + +L +N R++ + G + VNIP+ L +G++ L+S VIVGR Sbjct: 258 ATATGNDTFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRD 314 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ Sbjct: 315 DRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPR 374 Query: 285 EVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 V+W + + RQ G +A+ K S + Y+HDTP LF R +S Sbjct: 375 SVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSS 434 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ Sbjct: 435 GCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENG 492 Query: 402 IIQFRDDIYGLD 413 + DIY D Sbjct: 493 KVYTLPDIYKFD 504 >gi|325578156|ref|ZP_08148291.1| hypothetical protein HMPREF9417_1032 [Haemophilus parainfluenzae ATCC 33392] gi|325159892|gb|EGC72021.1| hypothetical protein HMPREF9417_1032 [Haemophilus parainfluenzae ATCC 33392] Length = 497 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 100/392 (25%), Positives = 180/392 (45%), Gaps = 24/392 (6%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG---WP 95 I+ + Y D A + +++ ++ +++ + GG Sbjct: 100 ILAKLYADNKYDLMWKDKAAEKQFLREYAAMVASGISKRSAQSLVNLHNAEKTGGLTYDV 159 Query: 96 ELPIRPLHLGNSSVSVQRLRER-LIISGDLDPSKGLSVAFDAYVESAVKL-----FQMRH 149 L L S +V + +R L + P D + +SAVK F + Sbjct: 160 LLSDAFLDYLYYSKNVNQQAQRWLYATNAYKPELPNQEIIDEW-QSAVKNNNVSGF--VN 216 Query: 150 GLDPSGMVDSSTLEAMNV-----PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 GL + T++++ + ++L +N R++ + + + G + VNIP+ Sbjct: 217 GLSNHNRLYRETVQSLPSMISASGISEMGKKLALNAQRLRVIPDFENG---IFVNIPSYQ 273 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L+ +GK L S VIVG+ +R+TP+++SR++ ++ NP W P +I +D++ L++DP Sbjct: 274 LKYYRDGKAILESRVIVGKNERRTPVMYSRLSNVVVNPPWNAPTRLINEDILPKLKRDPG 333 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 Y +N ++D KG + ++W+S + + RQ G +A+ + K S + Y+ Sbjct: 334 YAAAHNYSILDSKGNTIDPYSINWSSIGDRFPYRIRQAAG-DSALGNYKFNMPSSDAIYL 392 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF+ R +SGCVRV L LL++ WS V+ ++KTT + Sbjct: 393 HDTPNHNLFSKKDRALSSGCVRVEKSDQLASILLQEA-GWSEDRKRNVLASKKTTSANIR 451 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T PV Y++AW ++ Q DIY D+ Sbjct: 452 TNDPVFLYYVTAWV-ENGQTQVLPDIYKYDDA 482 >gi|32034588|ref|ZP_00134744.1| COG2989: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207609|ref|YP_001052834.1| hypothetical protein APL_0121 [Actinobacillus pleuropneumoniae L20] gi|126096401|gb|ABN73229.1| hypothetical protein APL_0121 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 521 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + +L +N R++ + G + VNIP+ L +G++ L+S VIVGR Sbjct: 258 ATATGNDTFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRD 314 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ Sbjct: 315 DRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPR 374 Query: 285 EVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 V+W + + RQ G +A+ K S + Y+HDTP LF R +S Sbjct: 375 SVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSS 434 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ Sbjct: 435 GCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENG 492 Query: 402 IIQFRDDIYGLD 413 + DIY D Sbjct: 493 KVYTLPDIYKFD 504 >gi|307249325|ref|ZP_07531319.1| hypothetical protein appser4_1390 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858619|gb|EFM90681.1| hypothetical protein appser4_1390 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 521 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 132/252 (52%), Gaps = 8/252 (3%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + +L +N+ R++ + G + VNIP+ L +G++ L+S VIVGR Sbjct: 258 ATATGNDTFYKLALNVQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRD 314 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ Sbjct: 315 DRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPR 374 Query: 285 EVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 V+W + + RQ G +A+ K S + Y+HDTP LF R +S Sbjct: 375 SVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSS 434 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ Sbjct: 435 GCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENG 492 Query: 402 IIQFRDDIYGLD 413 + DIY D Sbjct: 493 KVYTLPDIYKFD 504 >gi|308050064|ref|YP_003913630.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] gi|307632254|gb|ADN76556.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] Length = 459 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 157/372 (42%), Gaps = 7/372 (1%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHL 104 ++D I + P A+ A+ + I P++ L L Sbjct: 88 SPQAQLMAAEQQGQLDRLIANLTPEY--RGFARLRSALVRERQIERVPIPGLAPLQSLGL 145 Query: 105 GNSSVSVQRLRERLII-SGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G S + +LR L I G+ L P+ +D + +K +Q +GL +G +DS+T Sbjct: 146 GQSHPDLAQLRRALAIRLGEALPPTLQDRPVWDPPFTALLKQYQDSNGLSATGRLDSATR 205 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + RI +Q +L + L ++ +LVNIP L + + V L VIVG Sbjct: 206 RHLGSVGQDRIAAIQYSLRQW-YQLPDRIEGYAMLVNIPRYELLVLNDEAVELAVPVIVG 264 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 TP ++S + + NP W P SI++ +++ RQDP L + + + Sbjct: 265 SPANPTPKMNSYFSSVTLNPSWTPPMSIVRNELLPGYRQDPTTLHRQGFEWVGKGQSRLP 324 Query: 283 VEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +V + + RQ PG+ N + + Y+HDT P LF R + Sbjct: 325 WTQVTPENVNNVLGRYQLRQKPGRNNPLGKVRFNLAQSRAIYLHDTNNPRLFRQSQRALS 384 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 GCVRV + +LL + + + + + ++ + ++ + V V+ VY+ AW D Sbjct: 385 HGCVRVAEYQRVLDYLLANESSGRQRQVAQALQQHDSVTARVGSRVAVYLVYMPAWVGPD 444 Query: 401 SIIQFRDDIYGL 412 + + DD+YG Sbjct: 445 NRLHLVDDVYGW 456 >gi|322515092|ref|ZP_08068099.1| hypothetical protein HMPREF0027_1851 [Actinobacillus ureae ATCC 25976] gi|322118898|gb|EFX91080.1| hypothetical protein HMPREF0027_1851 [Actinobacillus ureae ATCC 25976] Length = 530 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 135/254 (53%), Gaps = 8/254 (3%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 EA + +L +N R++ + G + VNIP+ L +G++ L+S VIVG Sbjct: 265 EATATTGNDTFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVG 321 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ Sbjct: 322 RDDRRTPVMYSKLSNVVVNPPWNIPPTILTKDIIPKLARNPGFAGSAGYEIFDRKGNKIN 381 Query: 283 VEEVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 V+W+ + + RQ G +A+ K S + Y+HDTP LF R Sbjct: 382 PRSVNWSQYVNSKNIPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRAL 441 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW+ + Sbjct: 442 SSGCVRVERSDDLASILLKEA-GWSMDRKQKVLASQKTTSANIRSDNPVYLYYVTAWA-E 499 Query: 400 DSIIQFRDDIYGLD 413 + + DIY D Sbjct: 500 NGKVYTLPDIYKFD 513 >gi|301156058|emb|CBW15529.1| predicted carboxypeptidase [Haemophilus parainfluenzae T3T1] Length = 489 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 176/392 (44%), Gaps = 24/392 (6%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG---WP 95 I+ + Y D A + +++ ++ +++ + GG Sbjct: 92 ILAKLYADNKYDLMWKDKAAEKQFLREYAAMVASGISKRSAQSLINLHNAEKTGGLTYDV 151 Query: 96 ELPIRPLHLGNSSVSVQRLRER-LIISGDLDPSKGLSVAFDAYVESAVK-----LFQMRH 149 L L S +V + +R L + P D + +SAVK F + Sbjct: 152 LLSDAFLDYLYYSKNVNQQAQRWLYATNAYKPELPNQEIIDQW-QSAVKNNAVSDF--VN 208 Query: 150 GLDPSGMVDSSTLEAMNV-----PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 GL + T++++ + ++L +N R++ + + + G + VNIP+ Sbjct: 209 GLSNHNRLYRETVQSLPSMISPSGISAIGKKLALNAQRLRIIPDFENG---IFVNIPSYQ 265 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L+ +GKV L S VIVG+ +R+TP+++SR++ ++ NP W P +I +D++ L++DP Sbjct: 266 LKYYRDGKVLLESRVIVGKNERRTPVMYSRLSNVVVNPPWNAPTRLINEDILPKLKRDPS 325 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 Y +N ++D G + ++W+S + RQ G +A+ + K S + Y+ Sbjct: 326 YATAHNYSILDSNGNTINPHSINWSSIGNKFPYRIRQAAG-DSALGNYKFNMPSSDAIYL 384 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF+ R +SGCVRV L LLK+ WS + ++KT + Sbjct: 385 HDTPNHSLFSKKDRALSSGCVRVEKSDQLASILLKEA-GWSEDKKRNALASKKTVSANIR 443 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T PV Y++AW ++ DIY D+ Sbjct: 444 TNDPVFLYYVTAWV-ENGQTHVLPDIYKYDDA 474 >gi|294012199|ref|YP_003545659.1| hypothetical protein SJA_C1-22130 [Sphingobium japonicum UT26S] gi|292675529|dbj|BAI97047.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 503 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 144/349 (41%), Gaps = 31/349 (8%) Query: 75 IAQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + +A A + GG P++P L G LR RL + Sbjct: 178 YVKLREARADFAQ--RWGGLPQVPVPADVKLRPGMK-AGAAALRRRLGL--------ASG 226 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 A+D + + VK FQ HGL P G+ ++T+ A+N D R + +N+ R + L Sbjct: 227 TAYDKALVARVKAFQGDHGLKPDGVAGAATIAALNRGDDHYDRLIALNMERARLLPG--P 284 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 +R+V+V+ +A L G V+VG + QTP++ + NPYW +P ++ Sbjct: 285 QVRHVVVDAASARLWYFSKGAQDGTMKVVVGAKESQTPMMAGMVRYATLNPYWNVPSDLV 344 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPN--FIFRQDPGKIN 306 ++ + + + L + + +++ VDW + RQ PG N Sbjct: 345 ERKLAPRML-NGASLTKLRYEALSDWSANARKLDPAAVDWRAVADGRTELRVRQLPGGDN 403 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM K F + Y+HDTP L R ++GCVR+ + L W + Sbjct: 404 AMGKVKFMFPNDLGIYLHDTPSRDLLAKPARQFSNGCVRLEDAQRLGRWFFGKPLKPASD 463 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 V L VPV+ Y++A +D ++F D+YG D V Sbjct: 464 K--------PEQHVPLPQPVPVYLTYLTAVPLEDG-VRFLPDVYGRDGV 503 >gi|332826880|gb|EGJ99680.1| hypothetical protein HMPREF9455_03943 [Dysgonomonas gadei ATCC BAA-286] Length = 593 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 99/436 (22%), Positives = 184/436 (42%), Gaps = 35/436 (8%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + G + K ++ D + + N+ + + + P S++ Sbjct: 151 YITGMKYGFT-DPKNLYKKDYDIVTSAPDSLFYNNLYAEIKKDPISAVLNSQP--SEDIY 207 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSV- 132 + + + I G + E+ LG+ S ++ + RL+++G+ P S Sbjct: 208 LRLREEYKLLRTIQETG-FKEITSGDVTYKLGDKSKHIKDIAGRLMLTGEYKPDSISSDS 266 Query: 133 ---AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 D + +A+ F+ R+ V T+ A+N P + + +++ N+ R + + Sbjct: 267 LHIKLDEELLAAINTFRRRNSYPEEAEVGKLTISALNRPFEYYLAKIRANMERYRWKRAK 326 Query: 190 KMGLRYVLVNIPAASLEA--VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +++ VN+ AA L A +N + L S V VG V +TP+L S I+ + NP W +P Sbjct: 327 AKHYKHIEVNVAAAMLVANNTKNDSLPLISRVCVGSVRNKTPLLQSDISYMNLNPIWNVP 386 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPGKI 305 SI QK++ L ++DP Y+K +N+ + GKEV V +DW P + +QDPG Sbjct: 387 ASIAQKEVAVLQKKDPTYIKRHNMKLYKG-GKEVDVSSIDWEDVNPSKFSYTIKQDPGGG 445 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K F + + Y+HDTP + FN R + GCVRV+ DL + + Sbjct: 446 NSLGLVKFMFNNAFSVYLHDTPSKLAFNRKNRAVSHGCVRVQKPFDLAFFCASPITEVYK 505 Query: 366 YHIEEVVKT-------------------RKTTPVKLATEVPVHFVYISAWS-PKDSIIQF 405 + + + ++ + Y +A+ P D + + Sbjct: 506 DQLYHSINKPPVSDEGKKLLKEQKLKKLPDIINIDKDNKISLFIDYYTAFMYPDDEALYY 565 Query: 406 RDDIYGLDNVHVGIIP 421 DDIY D + + + Sbjct: 566 ADDIYEYDKLILDALN 581 >gi|212635459|ref|YP_002311984.1| hypothetical protein swp_2663 [Shewanella piezotolerans WP3] gi|212556943|gb|ACJ29397.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 457 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 153/350 (43%), Gaps = 9/350 (2%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL---DPS 127 S + I I Y+ + S WP+L LG + + +LR L+ DL D S Sbjct: 107 SNKQIKALRDKIRQYEQL-SNYQWPQLEASVFSLGQRATDIAKLRWVLVKLDDLEFKDIS 165 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 FD + ++K FQ RHGL SG ++ T+ +N + +LQ++L + Sbjct: 166 AYREAIFDPSITRSLKRFQKRHGLIQSGELNKETITLLNTEPAFIVSKLQLSLKDKLSKV 225 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + Y+ VNIP L + L VIVG + +TP+LH+ +++I NP W P Sbjct: 226 NYQ-NSSYIEVNIPEFKLRIKGDESSTLEFPVIVGSIKNKTPLLHTYVSKITINPTWTPP 284 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN----FIFRQDPG 303 RSI+ +++A L++ P+ L++ ++ + ++ + Q PG Sbjct: 285 RSIVYNELLAELKKSPKSLENQKFVLVKKGNTNEVKSLKGMDASRLKQELKVYQLVQSPG 344 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ + + +MHDTP+ F R + GC+R+ L +L+ + Sbjct: 345 FRNALGKYRFTIPNSELIFMHDTPDKQAFKKRNRAISHGCIRLSQPELLAKYLIDRENSI 404 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 K T +KL +P+ + W KD+++Q R +Y + Sbjct: 405 ESIRFLSARKGVNTVDIKLRNPIPIIITNHNVWVDKDNVLQVRPSVYNRE 454 >gi|152993088|ref|YP_001358809.1| hypothetical protein SUN_1501 [Sulfurovum sp. NBC37-1] gi|151424949|dbj|BAF72452.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 397 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 93/361 (25%), Positives = 146/361 (40%), Gaps = 50/361 (13%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR 115 + +P + + I + I + PL GN + R++ Sbjct: 75 YGDLFEYTMQLLPQ--SRRYIELRRYIDYLYSIRD------VYTPPLFRGNEVEDIMRIK 126 Query: 116 ERLIISG--DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 + G DL ++ +F AVK +Q RHGL+ G + T +M P+ I Sbjct: 127 AIFRLLGIADLPDDPYITDSF----IEAVKEYQRRHGLEVDGKIGPQTRRSMKQPISSII 182 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 R+++ NL+ + + YVLVNIP ++ ENG L V+VG+ +TP+ H Sbjct: 183 RKVKKNLVLKSIV--HEKPATYVLVNIPEFAMHYYENGWPALNMKVVVGKPKMRTPVFHR 240 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + I+ NP W +P SI K+ YL+ + + GK Sbjct: 241 NMQYIVENPRWNVPPSIYAKEYANKSE---SYLRKKGL-FYNSDGK-------------- 282 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 Q PG+ N++ K F +R N YMHDTP LF R + GC+R+ L Sbjct: 283 ----LYQRPGRRNSLGLVKFLFPNRFNVYMHDTPSKYLFKRYRRAYSHGCIRLEKPFALL 338 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + + KT + L +PV+ Y + W + I+QFR DIYG + Sbjct: 339 N------------KLGYTYRPGKTRWITLKHTIPVYVEYHTVWVDDNGIVQFRPDIYGYE 386 Query: 414 N 414 Sbjct: 387 R 387 >gi|15602135|ref|NP_245207.1| hypothetical protein PM0270 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720500|gb|AAK02354.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 515 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 82/243 (33%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + ++ +N R++ + G + VNIP+ L +GK+ L S VIVG+ R+TP+L+ Sbjct: 261 LYKIAINAQRLRVIPTFDNG---LFVNIPSYQLHYYRDGKLILTSKVIVGKKARKTPVLY 317 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 S+++ ++ NP W P +I +D++ +R+DP Y+ N +ID KGK + +DW + Sbjct: 318 SKLSDVVVNPPWNTPTRLINEDIIPRVRKDPSYIYRNGYTIIDSKGKTIDPYTIDWENMT 377 Query: 293 P--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + RQ PG +A+ + K S + Y+HDTP LF +SGCVRV Sbjct: 378 AKKFPYRLRQAPG-DSALGNFKFNMPSSDAIYLHDTPSRGLFAKKDLALSSGCVRVEKAD 436 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L LLK+ WS VK+RKT V +A+ PV Y++AW + DIY Sbjct: 437 ELASVLLKEA-GWSEERKVNTVKSRKTISVNVASNNPVFLYYVTAWVN-NGKTHTLPDIY 494 Query: 411 GLD 413 G D Sbjct: 495 GYD 497 >gi|288959756|ref|YP_003450096.1| hypothetical protein AZL_a00210 [Azospirillum sp. B510] gi|288912064|dbj|BAI73552.1| hypothetical protein AZL_a00210 [Azospirillum sp. B510] Length = 545 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 4/302 (1%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V +L RLI G L K F+ VE+AV+ FQ GL P G V T +A++ Sbjct: 170 DRVGKLSRRLIELGLLPADKWTDS-FNDDVEAAVRAFQTTEGLQPDGKVGEVTRQALDRT 228 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + + + +LVN+P S+ +E+G+ +VGR R+T Sbjct: 229 PAQTVAL-LRRAAAAMRAQQASIPDTSILVNLPGQSVTLIEHGRPTFTMRAVVGRPSRKT 287 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+L ++ + NP W +P +++ +D + LR+ N + +D + + V+W Sbjct: 288 PLLQDKVTSVTINPTWTVPPTVLSEDKLPALRKKGTTGIKNAVVYLDGA-EVASTQSVNW 346 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +P Q PG NA+ + + + ++H T +P LF+ +R +SGCVR+ + Sbjct: 347 WSVDPGRVRIVQKPGDDNALGRFRFNLTNGDGIFLHGTNDPRLFSRDLRAASSGCVRLED 406 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + LL + I + + T T ++L +PV FVY +A +++ D Sbjct: 407 ARLMAETLL-GAAKVTPAGIGQQLDTGDTKTIRLPVAIPVRFVYWNASVDTAGVVRVHPD 465 Query: 409 IY 410 IY Sbjct: 466 IY 467 >gi|255530583|ref|YP_003090955.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] gi|255343567|gb|ACU02893.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] Length = 471 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 86/301 (28%), Positives = 147/301 (48%), Gaps = 22/301 (7%) Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 G LD + S + +++A+K ++A + L++NL Sbjct: 189 GYLDSIQPKSGQY-LALQAALKA----------------QVQAQEKTISQTGELLKLNLE 231 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ + GL+YV VNI SL+ ++ GK+ LR V VG RQTP L S I + N Sbjct: 232 RLRWK-NRPPGLKYVRVNIADFSLDVIDKGKLVLRMKVCVGEAARQTPQLSSMIYSVQVN 290 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W IP SI + +++ +D YL +N+I++ + +E +DW EP ++ F+Q Sbjct: 291 PVWNIPESIARNEIIKYASRDKYYLANNSINVFKNGKRVWDLEAIDWGKAEPGSYSFKQR 350 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K F + ++ Y+HDTP FN R + GCVRV ++L L P Sbjct: 351 PGMKNSLGKIKFLFKNESSVYLHDTPVKSAFNQKNRAISHGCVRVEKPLELAFVLFGKGP 410 Query: 362 TWSRYHIEEVVKTR--KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 + ++ +++ + + L T +P+ Y +A + + + F DIYGLD++ Sbjct: 411 KYD--QVKNAMQSGYPREKYIGLPTAIPISIAYYTALADQQGKVIFNKDIYGLDDMLAEE 468 Query: 420 I 420 + Sbjct: 469 L 469 >gi|257465088|ref|ZP_05629459.1| hypothetical protein AM202_01165 [Actinobacillus minor 202] gi|257450748|gb|EEV24791.1| hypothetical protein AM202_01165 [Actinobacillus minor 202] Length = 537 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 77/256 (30%), Positives = 135/256 (52%), Gaps = 8/256 (3%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ + +L +N R++ + G + VNIP+ L +G++ L+S VIV Sbjct: 271 VDEVAATGSSSFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGQLALQSKVIV 327 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 GR DR+TP+++S+++ ++ NP W +P SI+ KD++ L ++P + ++D G +V Sbjct: 328 GREDRRTPVMYSKLSNVVVNPPWNVPTSILTKDIVPKLARNPGIADSLSYEILDGSGNKV 387 Query: 282 FVEEVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V+W+ + + RQ G +A+ K S + Y+HDTP LF+ R Sbjct: 388 NPRSVNWSQYLNAKSIPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNHGLFSRTDRA 447 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV +L LLK+ WS + V+ ++KTT + ++ PV+ Y+++W Sbjct: 448 LSSGCVRVAKSSELASILLKEA-GWSAEKQQSVLASKKTTSANIRSDNPVYLYYVTSWV- 505 Query: 399 KDSIIQFRDDIYGLDN 414 + + DIY LDN Sbjct: 506 EGGKVYTLPDIYKLDN 521 >gi|240948089|ref|ZP_04752499.1| hypothetical protein AM305_04803 [Actinobacillus minor NM305] gi|240297569|gb|EER48061.1| hypothetical protein AM305_04803 [Actinobacillus minor NM305] Length = 539 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 78/266 (29%), Positives = 136/266 (51%), Gaps = 17/266 (6%) Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G+V +L +N R++ + G + VNIP+ L +G Sbjct: 272 PVDGIV---------ATGSNSFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDG 319 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 ++ L+S VIVGR DR+TP+++S+++ ++ NP W +P SI+ KD++ L ++P + Sbjct: 320 QLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSILTKDIVPKLARNPGIADSLSY 379 Query: 272 HMIDEKGKEVFVEEVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++D G +V V+W+ + + RQ G +A+ K S + Y+HDTP Sbjct: 380 EILDGSGNKVNPRSVNWSQYLNAKSIPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPN 439 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF+ R +SGCVRV +L LL++ WS + V+ ++KTT V + ++ PV Sbjct: 440 HGLFSRTDRALSSGCVRVNKSSELASILLREA-GWSAEKQQSVLASKKTTSVNIRSDNPV 498 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDN 414 + Y+++W + + DIY LD+ Sbjct: 499 YLYYVTSWV-EGGKVYTLPDIYKLDS 523 >gi|219872270|ref|YP_002476645.1| hypothetical protein HAPS_2267 [Haemophilus parasuis SH0165] gi|219692474|gb|ACL33697.1| conserved hypothetical protein [Haemophilus parasuis SH0165] Length = 516 Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 128/248 (51%), Gaps = 8/248 (3%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 QL +N R++ + G + VNIP+ L GK+ L+S VIVGR DR+TP Sbjct: 258 TPSFTQLALNAQRLRLIPSFNNG---IFVNIPSYQLYYFREGKLVLQSKVIVGRNDRKTP 314 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +++S+++ ++ NP+W +P +I KD++ LR+DP ++D KG + ++W Sbjct: 315 VMYSKLSNVVVNPHWNVPSTIKNKDLVPKLRKDPILADKLGYEILDGKGNKFSAHSINWA 374 Query: 290 SP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + RQ G +A+ K S + Y+HDTP LF+ R +SGCVRV Sbjct: 375 AYEGKNNFPYHIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRV 434 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 +L LL + WS ++V+ ++KTT + ++ PV+ Y+++W + I Sbjct: 435 AKADELATLLLAEA-GWSAQRKQDVLASKKTTSAPIRSDNPVYLYYVTSWI-EGGKIYTL 492 Query: 407 DDIYGLDN 414 DIY D Sbjct: 493 PDIYQFDK 500 >gi|330448515|ref|ZP_08312163.1| hypothetical protein PMSV_2819 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492706|dbj|GAA06660.1| hypothetical protein PMSV_2819 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 569 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 145/338 (42%), Gaps = 21/338 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDPS------KGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 LG++ + L G L + + A+K F+ +GL G++ Sbjct: 217 LGDTIPHGSDVATVLWNLGYLTQPQYQQVIAQKKITNTGVMNQAIKAFETNYGLKADGIM 276 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + + P R +NL R + + G + ++VNIP ++ +N K S Sbjct: 277 GPEVVAQLTCPYSSLARIAALNLQRERFAQLEGDGPQ-IIVNIPDYTMTLYDNQKPVFES 335 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 +I G R T + + IN ++ NPYW +P +I ++ + + +P +L+ N + +I+ Sbjct: 336 DIIDGMPKRPTNLFQTYINTVVINPYWYVPETIKVQNTIPSAKANPNFLQRNRMDVINSW 395 Query: 278 G--KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI--L 331 V ++W + P F FRQDPG NA+ + YMHD + L Sbjct: 396 SDRSVVPPSSINWATVNPKTFPHEFRQDPGPENALGRVAFLMPDSFSVYMHDEEQSEYPL 455 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R +SGC+RV+ ++ +L + +++++ + K + L V + Sbjct: 456 FKRRHRDLSSGCMRVQKPREMAKLILSYQNMPNLPSVDDMINSNKHREIGLKKHVDLDVA 515 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPID 429 Y+++W D + R DIYG DN P PI+ Sbjct: 516 YLTSWVTPDGQLAMRPDIYGYDN--------PRTKPIN 545 >gi|167855604|ref|ZP_02478364.1| hypothetical protein HPS_03656 [Haemophilus parasuis 29755] gi|167853295|gb|EDS24549.1| hypothetical protein HPS_03656 [Haemophilus parasuis 29755] Length = 516 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 8/248 (3%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 QL +N R++ + G + VNIP+ L GK+ L+S VIVGR DR+TP Sbjct: 258 TPSFTQLALNAQRLRLIPSFNNG---IFVNIPSYQLYYFREGKLVLQSKVIVGRNDRKTP 314 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +++S+++ ++ NP W +P +I KD++ LR+DP ++D KG + ++W Sbjct: 315 VMYSKLSNVVVNPPWNVPSTIKNKDLVPKLRKDPILADKLGYEILDGKGNKFSAHSINWA 374 Query: 290 SP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + RQ G +A+ K S + Y+HDTP LF+ R +SGCVRV Sbjct: 375 AYEGKNNFPYHIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRV 434 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 +L LL + WS ++V+ ++KTT + ++ PV+ Y+++W + I Sbjct: 435 AKADELATLLLAEA-GWSAQRKQDVLASKKTTSAPIRSDNPVYLYYVTSWI-EGGKIYTL 492 Query: 407 DDIYGLDN 414 DIY D Sbjct: 493 PDIYQFDK 500 >gi|152978757|ref|YP_001344386.1| hypothetical protein Asuc_1085 [Actinobacillus succinogenes 130Z] gi|150840480|gb|ABR74451.1| conserved hypothetical protein [Actinobacillus succinogenes 130Z] Length = 494 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 132/242 (54%), Gaps = 6/242 (2%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + + G + VNIP+ L NG++ L S VIVG+ +R+TP+++S+ Sbjct: 243 KLAINAQRLRIIPDFYNG---IFVNIPSYQLNYYRNGRLTLNSRVIVGKNNRRTPVMYSK 299 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP-EP 293 ++ ++ NP W P +I +D++ +++DP YL + +ID KG V ++W S Sbjct: 300 LSNVVVNPPWNAPTRLINEDIIPKVKRDPNYLVRHGYSIIDGKGNTVNPYNINWGSIGNK 359 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + RQ G +A+ K S + Y+HDTP LFNN R +SGCVRV L Sbjct: 360 FPYRLRQAAGDNSALGRYKFNMPSSDAIYLHDTPNHALFNNKNRALSSGCVRVDKSDQLA 419 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL + WS + V+ ++KTT + ++ PV+ Y++ W ++ +Q DIYG D Sbjct: 420 SILLSEA-GWSSDKKQRVLNSKKTTSAPILSDNPVYLYYVTTWV-ENGKVQSVPDIYGYD 477 Query: 414 NV 415 V Sbjct: 478 RV 479 >gi|239995151|ref|ZP_04715675.1| peptidoglycan binding domain-containing protein [Alteromonas macleodii ATCC 27126] Length = 481 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 146/321 (45%), Gaps = 13/321 (4%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-L 102 + ++ L + E EK + + + ++P+ P L Sbjct: 157 READPVASLNHALTNGVSATLRAMWPSHHEYQLLLEKKRSLLTAVSTVTT--QIPVGPTL 214 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 L ++S V L+ RL+ S FD + AVK FQM G++P G+V SSTL Sbjct: 215 KLNSTSERVVLLKSRLL------GPGTYSELFDKDLLDAVKQFQMSAGIEPDGIVGSSTL 268 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 EA+N + ++ NL R + L Q Y+ VNI + L G+ L VIVG Sbjct: 269 EALNATTFSWLERIDANLERWRWLPHQTW-STYLRVNIASFQLRGFTEGEETLGMPVIVG 327 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 RQTP+ + ++FNPYW +P SI KD +A L+ +P L + Sbjct: 328 TPVRQTPVFAESMKYMVFNPYWTVPFSIATKDKLAKLKTNPSLLVEQGYEAQPAGVSGFS 387 Query: 283 V-EEVDWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 ++ DW + ++ RQ PG NA+ K +++ Y+HDTP+ LF+ + R Sbjct: 388 PVDKFDWTNVSRGTFHYTLRQKPGPHNALGKVKFMLPNKHAIYLHDTPDHSLFSKLERNF 447 Query: 340 TSGCVRVRNIIDLDVWLLKDT 360 +SGC+RV N + L W+L + Sbjct: 448 SSGCIRVSNPLKLSQWVLTHS 468 >gi|146329173|ref|YP_001209233.1| lipoprotein [Dichelobacter nodosus VCS1703A] gi|146232643|gb|ABQ13621.1| conserved hypothetical lipoprotein [Dichelobacter nodosus VCS1703A] Length = 505 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 140/322 (43%), Gaps = 25/322 (7%) Query: 118 LIISGDLDPSKGLSVAFDAY--------------VESAVKL---FQMRHGLDPSGM---V 157 L ++GDL D + + ++ F H ++ Sbjct: 182 LALAGDLANGIVDPKTIDKEWNAEPVSDEQLMEWLAAGIRNHDIFTPLHQINADNRRYQT 241 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 A+ L +N+ R++ + Q G +YV+ NIPA ++E + + + Sbjct: 242 LKERYNALRAQGTKATDGLIINMERLRWMP-QDWGEQYVITNIPAFNVEMYRDERKIYET 300 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 +VGR DR TP ++I ++ NP W +P +I+++D + L+ +P + + Sbjct: 301 RAVVGRADRATPRFINKIQHVVINPTWTVPPTIMRQDKLPKLKNNPAAFDA-SYEAVSAS 359 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 GK V W+ E + RQ G+ NA+ K F +++ YMHDTP LF R Sbjct: 360 GKIAKPSSVSWS--EGNGYSLRQKSGQYNALGRVKFLFPNKHAIYMHDTPTRHLFKQNNR 417 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+R++ ++L LL D W+ I+ + K V E PV+ VY + + Sbjct: 418 ARSSGCIRLQKPLELAEILLADN-GWNAQKIQASIAKEKQQWVNPVKETPVYLVYWTTYV 476 Query: 398 PKDSIIQFRDDIYGLDNVHVGI 419 ++ I+ D+YGLD + Sbjct: 477 DANNTIKTTPDVYGLDKKLIRA 498 >gi|165975577|ref|YP_001651170.1| hypothetical protein APJL_0122 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875678|gb|ABY68726.1| hypothetical protein APJL_0122 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 521 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 8/253 (3%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + +L +N R++ + G + VNIP+ L +G++ L+S VIVGR Sbjct: 258 ATATGNDTFYKLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRD 314 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 DR+TP++HS+++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ Sbjct: 315 DRRTPVMHSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPR 374 Query: 285 EVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 V+W + + RQ G +A+ K S + Y+HDTP LF R +S Sbjct: 375 SVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSS 434 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++ W ++ Sbjct: 435 GCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIPSDNPVYVYYVAPWV-ENG 492 Query: 402 IIQFRDDIYGLDN 414 + DIY D Sbjct: 493 KVYTLRDIYEFDA 505 >gi|300773386|ref|ZP_07083255.1| peptidoglycan-binding domain 1 protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759557|gb|EFK56384.1| peptidoglycan-binding domain 1 protein [Sphingobacterium spiritivorum ATCC 33861] Length = 488 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 14/258 (5%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG------------- 222 + + L +++ + + +YV+VNIP L V+N K V VG Sbjct: 226 ICLTLEKLRWMGK-DFPEKYVVVNIPEQKLRMVDNRKTKDVMNVCVGETIYGPYARRAGA 284 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + +TP+L ++R+ NP W IP SI++K++++ LR +P YL+ N+ ++KG+ V Sbjct: 285 TDNHETPVLSGELDRMQVNPVWNIPVSIVKKELISSLRSNPNYLESRNMVAYNKKGQMVD 344 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 VDW+S NF F+Q+PG N++ + K F + + Y+HDTP +F+ R + G Sbjct: 345 PNTVDWSSDSVLNFKFKQNPGADNSLGNIKFIFSNPYSIYLHDTPAKQMFSAKNRAVSHG 404 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVRV L +L+ D + E K+ V + +PV+ Y + W D Sbjct: 405 CVRVERPAALAAFLVNDDKKAEQIATEIADTLNKSRWVMMKKTIPVYITYYTTWVDDDGK 464 Query: 403 IQFRDDIYGLDNVHVGII 420 + DIYG D + Sbjct: 465 LYRLPDIYGYDERLKKAM 482 >gi|323497656|ref|ZP_08102673.1| hypothetical protein VISI1226_22555 [Vibrio sinaloensis DSM 21326] gi|323317405|gb|EGA70399.1| hypothetical protein VISI1226_22555 [Vibrio sinaloensis DSM 21326] Length = 469 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 81/308 (26%), Positives = 146/308 (47%), Gaps = 9/308 (2%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 ++ I++ P S Q + P + G+ V L R Sbjct: 147 QMAELIEAYTPDSS--EYQQLIDTYLHIVKFQKQRIAPVAERGVIRPGDKLVDKAVLLAR 204 Query: 118 L-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 L ++ DL + +D + A+K FQ HGL+P G++ TL+ +N+ + R+ L Sbjct: 205 LEVVDVDLTDVDRTAAFYDKSLVPAIKQFQQLHGLNPDGIIGPQTLKWLNLSLSSRLSTL 264 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 +N R++ + ++VN+P+ + +GK S V+VGR R TP++ + ++ Sbjct: 265 ALNAERVRYWPSE--HDSIIVVNVPSYEMTYWHDGKAVFESKVVVGRKARPTPLMVTNLD 322 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPP 294 ++ NP W +P +I+ +D++ +++DP+Y+ +I ++ + G + + E+DW S P Sbjct: 323 TLILNPTWNVPWTIMVEDIIPKIQKDPEYITKQHIEILPKWGSKERIDPLEIDWESLNPK 382 Query: 295 NFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 F +R Q G NA+ K + Y+HDTP LF+ R +SGC+RV N Sbjct: 383 AFPYRMTQMSGSRNALGLYKFNTPNNRAIYLHDTPSKGLFSQPKRAFSSGCIRVENADVF 442 Query: 353 DVWLLKDT 360 LL+ Sbjct: 443 ASRLLEVQ 450 >gi|227536728|ref|ZP_03966777.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243420|gb|EEI93435.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 488 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 75/275 (27%), Positives = 129/275 (46%), Gaps = 15/275 (5%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 L+ + + + + L +++ + +Y++VNIP L V+N K Sbjct: 210 QELLQKGGLNKEEKENIY-LTLEKLRWRGK-DFPEKYIIVNIPEQKLRMVDNRKTKEVMN 267 Query: 219 VIVG-------------RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 V VG + +TP+L ++R+ NP W IP SI++K++++ LR +P Y Sbjct: 268 VCVGETIYGPYARRAGATDNHETPVLSGELDRMQVNPVWNIPASIVKKELISSLRSNPNY 327 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L+ N+ ++KG+ V VDW+S NF F+Q+PG N++ + K F + + Y+HD Sbjct: 328 LESRNMVAYNKKGQMVDPNTVDWSSDSVLNFKFKQNPGADNSLGNIKFIFSNPYSIYLHD 387 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP +F+ R + GCVRV L +L+ D + E K+ V + Sbjct: 388 TPAKQMFSAKNRAVSHGCVRVEKPAALAAFLVNDEKKAEQIATEIADTLNKSRWVMMKKT 447 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +PV+ Y + W + + DIYG D + Sbjct: 448 IPVYITYYTTWVDDEGKLYKLPDIYGYDERLKKAM 482 >gi|148825793|ref|YP_001290546.1| hypothetical protein CGSHiEE_03720 [Haemophilus influenzae PittEE] gi|148715953|gb|ABQ98163.1| hypothetical protein CGSHiEE_03720 [Haemophilus influenzae PittEE] Length = 489 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG+ R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|90578006|ref|ZP_01233817.1| hypothetical amidase [Vibrio angustum S14] gi|90441092|gb|EAS66272.1| hypothetical amidase [Vibrio angustum S14] Length = 569 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 81/324 (25%), Positives = 139/324 (42%), Gaps = 21/324 (6%) Query: 118 LIISGDLDPS------KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L G L + + A+K F+ +GL G++ + + P Sbjct: 231 LWNLGYLTQPQYQQIVAQTKITNSGVLNQAIKAFEENYGLKADGIIGPDVVSQLTRPYSS 290 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 +R +NL R + + G + ++VNIP + +N + S +I G R T + Sbjct: 291 LVRLAALNLQRERFAQLEGDGPQ-IIVNIPDYKMTLYDNQEPVFESKIIDGMPKRPTNLF 349 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWN 289 S IN ++ NPYW +P +I ++ + + +P +L +N + +I+ V +DW Sbjct: 350 QSYINTVVINPYWYVPETIKVQNTIPSAKANPNFLANNRMDVINSWSDRSVVPPSSIDWA 409 Query: 290 SPEPPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI--LFNNVVRFETSGCVR 345 + P F FRQDPG NA+ + YMHD + LF R +SGC+R Sbjct: 410 TVNPKTFAHEFRQDPGPENALGRVAFLMPDSFSVYMHDESQSEYPLFKRRHRDLSSGCMR 469 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V+ + ++L + +++++ T + L T V + Y++AW + + Sbjct: 470 VQQPRKMATFILSYQNMPNLPSVDDMINTNNHREIGLNTHVNLDVAYLTAWVTPNGQLAM 529 Query: 406 RDDIYGLDNVHVGIIPLPEDHPID 429 R DIYG DN P PI Sbjct: 530 RPDIYGYDN--------PRAKPIQ 545 >gi|319896895|ref|YP_004135090.1| hypothetical protein HIBPF05750 [Haemophilus influenzae F3031] gi|317432399|emb|CBY80754.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 489 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|16273554|ref|NP_439809.1| hypothetical protein HI1667 [Haemophilus influenzae Rd KW20] gi|260581261|ref|ZP_05849079.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|1176067|sp|P44285|Y1667_HAEIN RecName: Full=Putative L,D-transpeptidase HI_1667 gi|1574515|gb|AAC23312.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092088|gb|EEW76033.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 489 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 7/242 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S + Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIDN 353 Query: 294 -PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 354 KFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYGY 470 Query: 413 DN 414 D Sbjct: 471 DR 472 >gi|301170424|emb|CBW30030.1| conserved hypothetical protein [Haemophilus influenzae 10810] Length = 487 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 234 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMY 290 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 291 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 350 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 351 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 409 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 410 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 467 Query: 412 LDN 414 D Sbjct: 468 YDR 470 >gi|309972939|gb|ADO96140.1| Putative murein L,D-transpeptidase [Haemophilus influenzae R2846] Length = 489 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|68250268|ref|YP_249380.1| hypothetical protein NTHI1968 [Haemophilus influenzae 86-028NP] gi|148827093|ref|YP_001291846.1| hypothetical protein CGSHiGG_02060 [Haemophilus influenzae PittGG] gi|319776086|ref|YP_004138574.1| hypothetical protein HICON_14350 [Haemophilus influenzae F3047] gi|68058467|gb|AAX88720.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|148718335|gb|ABQ99462.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae PittGG] gi|309750756|gb|ADO80740.1| Putative murein L,D-transpeptidase [Haemophilus influenzae R2866] gi|317450677|emb|CBY86897.1| conserved hypothetical protein [Haemophilus influenzae F3047] Length = 489 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|329123250|ref|ZP_08251818.1| hypothetical protein HMPREF9095_1036 [Haemophilus aegyptius ATCC 11116] gi|327471459|gb|EGF16907.1| hypothetical protein HMPREF9095_1036 [Haemophilus aegyptius ATCC 11116] Length = 487 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 234 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 290 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 291 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 350 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 351 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 409 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 410 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 467 Query: 412 LDN 414 D Sbjct: 468 YDR 470 >gi|325104437|ref|YP_004274091.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] gi|324973285|gb|ADY52269.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] Length = 493 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 80/266 (30%), Positives = 130/266 (48%), Gaps = 11/266 (4%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--------- 224 ++ +NL R++ + +++LVNIP L +N K L V VG Sbjct: 229 ERIFLNLERLRWKIS-DFPEKFILVNIPEFKLRLYDNHKEALAMKVCVGATANPPYSKNG 287 Query: 225 -DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + +TP+L I+R+ NP W IP+SI K++M L ++P YL ++N+ D+ G V Sbjct: 288 QNHETPVLSGTIDRMQINPVWNIPKSIAGKEIMTKLVENPSYLDESNMVAYDKSGAAVNA 347 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 + VDW+S ++ F+Q+PG N++ K FY+ Y+HDTP +FN R + GC Sbjct: 348 QSVDWSSASVDDYSFKQNPGSDNSLGRVKFIFYNPYAIYLHDTPAKQMFNEKNRAVSHGC 407 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 VRV + L +LL D + E ++ VK+ V V+ Y +A++ I Sbjct: 408 VRVEQPLKLVDFLLNDQKESEKVKSEITGSDNESRWVKVKDPVKVYLAYYTAFADDKDGI 467 Query: 404 QFRDDIYGLDNVHVGIIPLPEDHPID 429 + DD+YG D + I+ Sbjct: 468 TWVDDVYGYDPKLKAALENYLPQTIN 493 >gi|229845074|ref|ZP_04465210.1| hypothetical protein CGSHi6P18H1_00944 [Haemophilus influenzae 6P18H1] gi|229812046|gb|EEP47739.1| hypothetical protein CGSHi6P18H1_00944 [Haemophilus influenzae 6P18H1] Length = 489 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG+ R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|145639176|ref|ZP_01794783.1| hypothetical protein CGSHiII_04039 [Haemophilus influenzae PittII] gi|145271738|gb|EDK11648.1| hypothetical protein CGSHiII_04039 [Haemophilus influenzae PittII] Length = 489 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG+ R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|145633343|ref|ZP_01789074.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 3655] gi|145634471|ref|ZP_01790181.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittAA] gi|144986189|gb|EDJ92779.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 3655] gi|145268451|gb|EDK08445.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittAA] Length = 489 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSEQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|229846898|ref|ZP_04467005.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae 7P49H1] gi|229810387|gb|EEP46106.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae 7P49H1] Length = 489 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSEQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|260582628|ref|ZP_05850417.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae NT127] gi|260094300|gb|EEW78199.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae NT127] Length = 489 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIY Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYD 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|145631483|ref|ZP_01787252.1| hypothetical protein CGSHi22421_02471 [Haemophilus influenzae R3021] gi|144982913|gb|EDJ90426.1| hypothetical protein CGSHi22421_02471 [Haemophilus influenzae R3021] Length = 489 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW ++ I DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWI-ENGNIVNLPDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|113461215|ref|YP_719284.1| hypothetical protein HS_1072 [Haemophilus somnus 129PT] gi|112823258|gb|ABI25347.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 475 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 134/254 (52%), Gaps = 7/254 (2%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + + + +L +N R++ + + G + VNIP+ L +GK+ L S VIVG Sbjct: 212 KLIPQDDKSILYKLAINAQRLRIIPDFNNG---IFVNIPSYQLNYYRDGKLVLNSKVIVG 268 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + R+TP+++S+++ I+ NP W+ +I +D++ ++ DP Y+ N+ + D KG+ + Sbjct: 269 KKARKTPVMYSKLSNIVVNPPWIPTPRLINEDIVPKIKLDPDYVARNSYTISDSKGQVID 328 Query: 283 VEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 +DWN+ + RQ PG +A+ + K S + Y+HDTP LF+ R +S Sbjct: 329 PSSIDWNTIGTNFPYRIRQAPG-GSALGNYKFNMPSSDAIYLHDTPNRGLFSKKNRALSS 387 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV L LL + W+ + V+ ++K T + ++ PV+ Y++ W D Sbjct: 388 GCVRVEKSDQLATILLTEA-GWTEERKQNVLNSKKNTSENIRSDNPVYLYYVTTWVEND- 445 Query: 402 IIQFRDDIYGLDNV 415 +++ DIY D V Sbjct: 446 VVKTLPDIYEYDQV 459 >gi|149277939|ref|ZP_01884078.1| putative periplasmic protein [Pedobacter sp. BAL39] gi|149231137|gb|EDM36517.1| putative periplasmic protein [Pedobacter sp. BAL39] Length = 501 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 86/327 (26%), Positives = 146/327 (44%), Gaps = 47/327 (14%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 LD + + ++ A++ G + + + R L+ NL R Sbjct: 188 YLDSIQPKDPQY-LALQEALRQ----------GAMGQ------GMNKEESSRVLKANLER 230 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR------------------- 223 ++ + +YVLVNI +L+ V+N K L+ V VG Sbjct: 231 LRWK-NKPTQQKYVLVNIADFTLDVVDNNKSVLKMKVCVGEGRNENFKDRVLKEYDETGL 289 Query: 224 -----VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 R+TP L+S I+ + NP W IP SI K++ +D YL +NNI + + Sbjct: 290 KKDRPFSRETPQLNSMIHSVQVNPVWNIPESIATKEISRYAAKDRFYLSNNNIDVFENGK 349 Query: 279 KEVFVEEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + E +D+++ + + F+Q PG N++ K F + + Y+HDTP F+ VR Sbjct: 350 RIEDPETIDFSAGDAGSRYTFKQRPGNDNSLGKIKFLFKNDESVYLHDTPAKAAFDLPVR 409 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT--TPVKLATEVPVHFVYISA 395 + GCVRV +L L D + I++ +++++ + L+ +VPV+ Y +A Sbjct: 410 AVSHGCVRVEKPSELAKALFGDGQKY--QTIQKEMQSKQPVAKDISLSPQVPVYLTYFTA 467 Query: 396 WSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W + +QFR DIYGLD V + Sbjct: 468 WKDEQGNMQFRKDIYGLDIVLDSYLQR 494 >gi|170717815|ref|YP_001784877.1| hypothetical protein HSM_1557 [Haemophilus somnus 2336] gi|168825944|gb|ACA31315.1| conserved hypothetical protein [Haemophilus somnus 2336] Length = 475 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 73/254 (28%), Positives = 134/254 (52%), Gaps = 7/254 (2%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + + + +L +N R++ + + G + VNIP+ L +G++ L S VIVG Sbjct: 212 KLIPQDDKSILYKLAINAQRLRIIPDFNNG---IFVNIPSYQLNYYRDGELVLNSKVIVG 268 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + R+TP+++S+++ I+ NP W+ +I +D++ ++ DP Y+ N+ + D KG+ + Sbjct: 269 KKARKTPVMYSKLSNIVVNPPWIPTPRLINEDIVPKIKLDPDYVARNSYTISDSKGQVID 328 Query: 283 VEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 ++WN+ + RQ PG +A+ + K S + Y+HDTP LF+ R +S Sbjct: 329 PSSINWNTIGTNFPYRIRQAPG-GSALGNYKFNMPSSDAIYLHDTPNRGLFSKKNRALSS 387 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV L LL + W+ + V+ ++K T + ++ PV+ Y++ W D Sbjct: 388 GCVRVEKSDQLATILLTEA-GWTEERKQNVLNSKKNTSENIRSDNPVYLYYVTTWVEND- 445 Query: 402 IIQFRDDIYGLDNV 415 +++ DIY D V Sbjct: 446 VVKTLPDIYEYDQV 459 >gi|89076172|ref|ZP_01162529.1| hypothetical amidase [Photobacterium sp. SKA34] gi|89048122|gb|EAR53707.1| hypothetical amidase [Photobacterium sp. SKA34] Length = 569 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 80/317 (25%), Positives = 137/317 (43%), Gaps = 13/317 (4%) Query: 118 LIISGDLDPS------KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L G L + + A++ F+ +GL G++ + + P Sbjct: 231 LWNLGYLTQPQYQQIVAQAKITNSGVINQAIQAFEGNYGLKMDGIIGPDVMRQLTRPYSS 290 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R +NL R + + G + ++VNIP + +N K S +I G R T + Sbjct: 291 LARIAALNLQRERFAQLEGDGPQ-IIVNIPDYKMTLYDNQKPIFESKIIDGIPKRPTNLF 349 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWN 289 S IN ++ NPYW +P +I ++ + + +P +L +N + +I+ V +DW Sbjct: 350 QSYINTVVINPYWYVPETIKVQNTIPSAKANPNFLANNRMDVINSWSDRSVVPPSSIDWA 409 Query: 290 SPEPPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI--LFNNVVRFETSGCVR 345 + P F FRQDPG NA+ + YMHD + LF R +SGC+R Sbjct: 410 TVNPKTFSHEFRQDPGPENALGRVAFLMPDSFSVYMHDESQSEYPLFKRRHRDLSSGCMR 469 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V+ + +L + + +++ T K + L T V + Y++AW ++ + Sbjct: 470 VQQPRKMATLILSYQNMPTLPSVNDMINTNKHREIGLNTHVNLDVAYLTAWVTQNGQLAM 529 Query: 406 RDDIYGLDNVHVGIIPL 422 R DIYG DN +I Sbjct: 530 RPDIYGYDNPGAKLIQN 546 >gi|319957191|ref|YP_004168454.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319419595|gb|ADV46705.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 423 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 77/269 (28%), Positives = 125/269 (46%), Gaps = 17/269 (6%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIPAASLEAVENGKVGLRSTVI 220 + R R+++++L R K + Y LVNIP + ENG++ S V+ Sbjct: 152 WHGGGLSEAQR-RKVRLSLERSKLMDPDPTHWQTYFLVNIPEFRVRFFENGRLAFVSDVV 210 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE---K 277 VG+ QTPI + + ++ NP W +P +I + + + L +DP Y K + ++ Sbjct: 211 VGKKSWQTPIFSAAMKYVVLNPTWNVPDNIARAEEIPHLLRDPNYFKHKRMIVLRSYDLD 270 Query: 278 GKEVFVEEVDWNSPEPP-------NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 V V W P + Q P K NA+ K F + N+ YMHDTP Sbjct: 271 TTPVNPRSVPWRKYLRPEWKKKDLPYKLIQLPAKGNALGRVKFLFPNGNSVYMHDTPAKS 330 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKD---TPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LF +R + GC+R+ I++ +L + + W+ +EE +K+ K V L +P Sbjct: 331 LFKRKIRAYSHGCIRLARPIEMLRYLAQHGYLSKDWT--QVEEELKSWKRHNVSLKEPIP 388 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 VH Y +A+ + +QF DIYG D + Sbjct: 389 VHVGYFTAYVSQGGGVQFFPDIYGYDQIM 417 >gi|296445064|ref|ZP_06887025.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296257485|gb|EFH04551.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 518 Score = 243 bits (619), Expect = 7e-62, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 20/249 (8%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++ N+ R + + + +G + VNIP L + +G+V R+ VIVG+ TP+ + Sbjct: 288 AEIIANMERWRWMP-RDLGENRIEVNIPDFELAVIRDGEVTHRARVIVGKEGTPTPVFSN 346 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + I+ NPYW +P SI+ K+M+ D Q + ++ G Sbjct: 347 AMQFIIVNPYWNVPPSILNKEMLPKFGGDLQAIAARGYEVVYRNGHA------------- 393 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 RQ PG+ NA+ K F + + Y+HDTP LF + R + GCVRV Sbjct: 394 ---RVRQRPGEGNALGRIKFMFPNDFSVYLHDTPSRALFASTHRAFSHGCVRVDQPFRFA 450 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +L W ++ ++ + + LA +P+H Y +A+ + +Q R D+YG Sbjct: 451 EAVLG--SGWREERVKRLI-GDQERYINLARPLPIHIEYFTAYVDESGRLQLRGDLYGYS 507 Query: 414 NVHVGIIPL 422 + L Sbjct: 508 AKVRAALGL 516 >gi|255623270|ref|XP_002540350.1| conserved hypothetical protein [Ricinus communis] gi|223496506|gb|EEF22033.1| conserved hypothetical protein [Ricinus communis] Length = 249 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 19/266 (7%) Query: 80 KAIAFYQDILSRGGWPELPIRP-LHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 K + Y+D+ ++GGW +P P L LG+ + +L RL I D + + FD Sbjct: 1 KGLVVYRDLAAKGGWALIPEGPPLKLGDKGDPRITQLEARLAIE-DPTIAVDKAPVFDEA 59 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 ++ A+ Q R GL+P G++ TL A+NVPV LRI Q+ N+ R + L E+ R + Sbjct: 60 LQQALMRAQKRFGLNPDGVLGKGTLAALNVPVQLRIDQIVANMERWRWLPEELPADR-IQ 118 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNI AA + + L + GR +TP+L S+I+ I+ NP W +P SI K++ Sbjct: 119 VNIAAAVMSVFHHDAPTLTMRAVTGRPGDETPMLQSQIHSIVLNPPWNVPSSIATKELWP 178 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 R +P YL N+ +I +G +Q G A+ K +F + Sbjct: 179 KERANPGYLARNDFIVIPTEG---------------GGTRLQQKAGDKAALGLVKFDFNN 223 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGC 343 Y+HDTP F + R + GC Sbjct: 224 PYGVYLHDTPSRAKFASYSRLASHGC 249 >gi|300024880|ref|YP_003757491.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526701|gb|ADJ25170.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 557 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 130/272 (47%), Gaps = 11/272 (4%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L +G + A P R+R N+ + + MG YVL NIP ++ Sbjct: 238 LPANGNL------AKLSPAAKRLR---ANMEMWRWMWP-DMGDFYVLNNIPEFMQYVYKD 287 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G++ + ++ G VD+++ I + ++ P W +P SI+ ++ L + ++ Sbjct: 288 GEIIRSAKIVAGEVDKKSTIFSRPLKYVVLRPAWRVPESIMVNELWPSLIRGGGLMRQYG 347 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + + + G+ V + DW+S + NFI Q PG + + K F S++ +MHDTP+ Sbjct: 348 LQLQTKDGRRVDWRQYDWSSTDIRNFIVLQPPGPKSVLGRVKFSFPSQHTIFMHDTPDKW 407 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK-TTPVKLATEVPVH 389 +F R + GC+RV+N + L +LK+ W I E+ ++ V ++ E+P+H Sbjct: 408 MFRPAQRTLSHGCLRVQNPMQLAEMVLKEDKGWDAAKIAELDRSGPLNNEVPISKEIPIH 467 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 VY +AW D ++ +D+YG + + Sbjct: 468 LVYFTAWVTDDGKLKTFNDVYGHEKRVTLALD 499 >gi|256423860|ref|YP_003124513.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256038768|gb|ACU62312.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 478 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 83/346 (23%), Positives = 154/346 (44%), Gaps = 9/346 (2%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S + IAFY D L R + + + + S L ++L G LD Sbjct: 136 SAPQYNALKSMIAFYNDRLQRQDYHPV---KITSETADSSNHPLIDKLYQLGFLD--APD 190 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 A + + ++ + G + +E +NV ++ R+ +L+ + + L + Sbjct: 191 YTAHEDTLRIKIRAAEYMFEFLEDGALRQGVIEELNVSLEKRLSELKHAINTFRWLNCLR 250 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V+V+IPAA L L S VIVG+ + L SRI+ ++ PYW +P +I Sbjct: 251 KYQYVVVVDIPAAELFVYLGDSTMLNSRVIVGKAKTPSSPLASRIDEVILFPYWTVPHNI 310 Query: 251 IQKDMMALLRQDPQ-YLKDNNIHMIDEKGKEVFVEEVDWNSPE--PPNFIFRQDPGKINA 307 K+++ ++ P YL+ N ++D+ G+ + + ++WN+ + RQ G N+ Sbjct: 311 AVKELLPGIKGAPSIYLEAGNYQVLDKSGRILDPQSINWNTLNKHNFPYTLRQMFGCDNS 370 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL-KDTPTWSRY 366 + K+ F++ +TY+HDTP F R+ + GC+RV + I L L+ + P Sbjct: 371 LGIIKLNFFNPYSTYLHDTPARSYFMFNSRYFSHGCIRVEDAIPLAKLLVPAEAPRIDSL 430 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 + + + +PV +Y AW + ++F +D+Y Sbjct: 431 SRMKTPPAGSPITIPMKPGIPVIILYEVAWPDANGKVRFFEDVYEK 476 >gi|237721416|ref|ZP_04551897.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449212|gb|EEO55003.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 518 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 19/273 (6%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILH 232 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L Sbjct: 246 DRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLS 305 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW--NS 290 SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W + Sbjct: 306 SRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYA 365 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + +QD N++ F + ++ Y+HDTP F R + GCVR++ + Sbjct: 366 GSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKAL 425 Query: 351 DLDVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYIS 394 D +LLK+ I + R+ L +P+ Y + Sbjct: 426 DFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQT 485 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + D+ +++ +DIY D + + P Sbjct: 486 VYLSADNNLRYCEDIYKYDPSLLEAMNNLNLKP 518 >gi|293370854|ref|ZP_06617399.1| conserved domain protein [Bacteroides ovatus SD CMC 3f] gi|292634070|gb|EFF52614.1| conserved domain protein [Bacteroides ovatus SD CMC 3f] Length = 513 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 19/273 (6%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILH 232 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L Sbjct: 241 DRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLS 300 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW--NS 290 SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W + Sbjct: 301 SRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGFQVDPHSIKWAKYA 360 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + +QD N++ F + ++ Y+HDTP F R + GCVR++ + Sbjct: 361 GSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKAL 420 Query: 351 DLDVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYIS 394 D +LLK+ I + R+ L +P+ Y + Sbjct: 421 DFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQT 480 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + D+ +++ +DIY D + + P Sbjct: 481 VYLSADNNLRYCEDIYKYDPSLLEAMNNLNLKP 513 >gi|260171549|ref|ZP_05757961.1| ErfK/YbiS/YcfS/YnhG family protein [Bacteroides sp. D2] Length = 518 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 19/273 (6%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILH 232 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L Sbjct: 246 DRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLS 305 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW--NS 290 SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W + Sbjct: 306 SRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYA 365 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + +QD N++ F + ++ Y+HDTP F R + GCVR++ + Sbjct: 366 GSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKAL 425 Query: 351 DLDVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYIS 394 D +LLK+ I + R+ L +P+ Y + Sbjct: 426 DFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQT 485 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + D+ +++ +DIY D + + P Sbjct: 486 VYLSTDNNLRYCEDIYKYDPSLLEAMNNLNLKP 518 >gi|160887148|ref|ZP_02068151.1| hypothetical protein BACOVA_05164 [Bacteroides ovatus ATCC 8483] gi|156107559|gb|EDO09304.1| hypothetical protein BACOVA_05164 [Bacteroides ovatus ATCC 8483] Length = 513 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 19/273 (6%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILH 232 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L Sbjct: 241 DRLLVNMERARWQYALDKGQKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLS 300 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW--NS 290 SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W + Sbjct: 301 SRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYA 360 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + +QD N++ F + ++ Y+HDTP F R + GCVR++ + Sbjct: 361 GSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKAL 420 Query: 351 DLDVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYIS 394 D +LLK+ I + R+ L +P+ Y + Sbjct: 421 DFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQT 480 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + D+ +++ +DIY D + + P Sbjct: 481 VYLSADNNLRYCEDIYKYDPSLLEAMNNLNLKP 513 >gi|315919863|ref|ZP_07916103.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693738|gb|EFS30573.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 513 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 19/273 (6%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILH 232 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L Sbjct: 241 DRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLS 300 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW--NS 290 SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W + Sbjct: 301 SRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYA 360 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + +QD N++ F + ++ Y+HDTP F R + GCVR++ + Sbjct: 361 GSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKAL 420 Query: 351 DLDVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYIS 394 D +LLK+ I + R+ L +P+ Y + Sbjct: 421 DFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQT 480 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + D+ +++ +DIY D + + P Sbjct: 481 VYLSTDNNLRYCEDIYKYDPSLLEAMNNLNLKP 513 >gi|299148640|ref|ZP_07041702.1| putative periplasmic protein [Bacteroides sp. 3_1_23] gi|298513401|gb|EFI37288.1| putative periplasmic protein [Bacteroides sp. 3_1_23] Length = 513 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 19/273 (6%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILH 232 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L Sbjct: 241 DRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLS 300 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW--NS 290 SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W + Sbjct: 301 SRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYA 360 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + +QD N++ F + ++ Y+HDTP F R + GCVR++ + Sbjct: 361 GSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKAL 420 Query: 351 DLDVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYIS 394 D +LLK+ I + R+ L +P+ Y + Sbjct: 421 DFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQT 480 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + D+ +++ +DIY D + + P Sbjct: 481 VYLSTDNNLRYCEDIYKYDPSLLEAMNNLNLKP 513 >gi|152992423|ref|YP_001358144.1| hypothetical protein SUN_0829 [Sulfurovum sp. NBC37-1] gi|151424284|dbj|BAF71787.1| hypothetical protein [Sulfurovum sp. NBC37-1] Length = 405 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 80/265 (30%), Positives = 134/265 (50%), Gaps = 11/265 (4%) Query: 162 LEAMNVPVD---LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 +A+ +R++++++ RIK L++ +G YVLVNIP + +EN K + Sbjct: 138 YKALQRTPGASPQALRKVRMSIERIK-LMKPGLGKTYVLVNIPEFRVRVIENDKTSIAMG 196 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM---ID 275 VI G+ D QTPI + I+ NP W +P SI + +++ L +DP YLK + + M + Sbjct: 197 VITGKKDHQTPIFSENLQYIVLNPTWNVPDSIARNEVIPKLLKDPGYLKKHRLVMRRDYN 256 Query: 276 EKGKEVFVEEVDWNSPEPP----NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + V+ + + F F + P NA+ K F + ++ YMHDTP L Sbjct: 257 LDSPALSPGSVNLRAYKGGKGDVPFKFIEVPSDKNALGRVKFIFPNHHSVYMHDTPTKYL 316 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F VR + GCVR++N + +L + +S E + KT +K+ +PVH Sbjct: 317 FKRNVRAYSHGCVRLQNPKLMLKYLTEHYTNYSFEEAMEKYNSYKTQYMKIIKPLPVHTA 376 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVH 416 Y++A+ +D ++ DIYGLD + Sbjct: 377 YLTAYVEEDGTLKVFPDIYGLDAMQ 401 >gi|323137795|ref|ZP_08072871.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322397092|gb|EFX99617.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 495 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 79/406 (19%), Positives = 130/406 (32%), Gaps = 77/406 (18%) Query: 19 ILPMGLSLVEKPIHASVLDEII-NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 I+ + + + +I + ++ D D + P Sbjct: 161 IVDYAAQASGARVDPARISRLIGARPRLASASEALDAVTLAGADLADFNPP---HAGYRA 217 Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 +A + I G R L G Sbjct: 218 LRDKLAELRTIRENSG---------------------RVALASRG--------------- 241 Query: 138 VESAVKLFQMRHGLDPSGMVDSS-TLEAMNVPVDLRIR-QLQVNLMRIKKLLEQKMGLRY 195 + + ++ RI ++ N+ R + + +G Sbjct: 242 -----------------NDIGPQNSFASLTQGEAKRIEAEIIANMERWRWEP-RDLGATR 283 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNIP L +G R+ V+VG+ TP+ + ++ NP W +P+SII K+M Sbjct: 284 IEVNIPQFELALTRDGVKTHRTRVVVGKTSTPTPVFSDTMRYVVINPSWSVPQSIITKEM 343 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 D YL + G+ RQ PG+ NA+ K F Sbjct: 344 AGKHGGDLSYLAARGFKVSYSNGRA----------------SVRQPPGEKNALGRVKFVF 387 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y+HDTP LF R + GCVRV L +L W+ + +V Sbjct: 388 PNEFSVYLHDTPSRSLFATARRAYSHGCVRVDQPFALAEAVLTADAGWTEKRLRGMV-GA 446 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + LA +PVH Y +A D ++ DDIYG + Sbjct: 447 SERRIDLARPMPVHIEYFTATVDADGQLRLFDDIYGYSARVREALA 492 >gi|295086942|emb|CBK68465.1| Uncharacterized protein conserved in bacteria [Bacteroides xylanisolvens XB1A] Length = 513 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSR 234 L VN+ R + G +YV+ N+ A L+A+ E L + VG V +TP+L SR Sbjct: 243 LLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSR 302 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W Sbjct: 303 IYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGK 362 Query: 295 --NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 363 GVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDF 422 Query: 353 DVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYISAW 396 +LLK+ I + R+ L +P+ Y + + Sbjct: 423 AFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVY 482 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 D+ +++ +DIY D + + P Sbjct: 483 LSADNNLRYCEDIYKYDPSLLEAMNNLNLKP 513 >gi|298481479|ref|ZP_06999671.1| periplasmic protein [Bacteroides sp. D22] gi|298272343|gb|EFI13912.1| periplasmic protein [Bacteroides sp. D22] Length = 513 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSR 234 L VN+ R + G +YV+ N+ A L+A+ E L + VG V +TP+L SR Sbjct: 243 LLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSR 302 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W Sbjct: 303 IYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGK 362 Query: 295 --NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 363 GVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDF 422 Query: 353 DVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYISAW 396 +LLK+ I + R+ L +P+ Y + + Sbjct: 423 AFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVY 482 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 D+ +++ +DIY D + + P Sbjct: 483 LSADNNLRYCEDIYKYDPSLLEAMNNLNLKP 513 >gi|153807673|ref|ZP_01960341.1| hypothetical protein BACCAC_01955 [Bacteroides caccae ATCC 43185] gi|149130035|gb|EDM21247.1| hypothetical protein BACCAC_01955 [Bacteroides caccae ATCC 43185] Length = 514 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 19/271 (7%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSR 234 L VN+ R + + G +YV+ N A L+AV E L + VG V +TP+L S+ Sbjct: 244 LLVNMERARWQYALEKGKKYVVANTAAFMLQAVNEETDSILEMRICVGSVKNRTPLLSSK 303 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 304 IYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGTQVDPHSIKWAKYAGK 363 Query: 295 --NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +QD N++ F + + Y+HDTP F+ R + GCVR++ +D Sbjct: 364 GVPYTVKQDNKAGNSLGRIIFRFPNPYSVYLHDTPSKWAFSRKNRAVSHGCVRLQKALDF 423 Query: 353 DVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYISAW 396 +LLK+ I + R+ L +P+ Y + + Sbjct: 424 AFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQTVY 483 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 D+ +++ +DIY D + + P Sbjct: 484 LSADNNMRYCEDIYNYDPSLLEAMKSLNLKP 514 >gi|326798188|ref|YP_004316007.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] gi|326548952|gb|ADZ77337.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] Length = 487 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 80/326 (24%), Positives = 147/326 (45%), Gaps = 16/326 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDS 159 L G ++ R + S+ SV+FD + +K + + SG + Sbjct: 171 ALEYGMTNPRKVLPRY------YIPVSRPDSVSFDRVLSVENLKHY-LDSIQPKSGAYRA 223 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 +N + L N+ R++ + + VNIPA L + + + V Sbjct: 224 MQKALINENHGAKKIALIANMERLRWKYKMDSTHL-IYVNIPAYQLYIIRDRSTKGQMKV 282 Query: 220 IVGRVD-RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 +VG+ D +TP+L S+I+ + NP W IP SI +K+++ + D YL ++ + + Sbjct: 283 VVGKADGHETPMLASKIHSVQVNPIWNIPTSIAKKEILVQAKADKYYLANHGMDVYRRGV 342 Query: 279 KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 K + +DW+ N F+Q PG N++ K F + ++ Y+HDTP +F+ + Sbjct: 343 KIANPDTIDWSVYNEENLPYSFKQQPGNTNSLGLIKFLFKNGSSVYLHDTPAKAVFSRSM 402 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT--TPVKLATEVPVHFVYIS 394 R + GCVRV +DL L + + I+E + + + + L +VPV Y++ Sbjct: 403 RAASHGCVRVEKPLDLARALFGEGEKYDL--IKEEMSSEEPVAKTIGLKPQVPVVLDYVT 460 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGII 420 S ++F D+Y LD++ + Sbjct: 461 CKMDSSSTLKFYPDVYKLDSLLYRSL 486 >gi|294646674|ref|ZP_06724299.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|294807105|ref|ZP_06765923.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292637962|gb|EFF56355.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|294445671|gb|EFG14320.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 521 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSR 234 L VN+ R + G +YV+ N+ A L+A+ E L + VG V +TP+L SR Sbjct: 251 LLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSR 310 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W Sbjct: 311 IYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGK 370 Query: 295 --NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 371 GVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDF 430 Query: 353 DVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYISAW 396 +LLK+ I + R+ L +P+ Y + + Sbjct: 431 AFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVY 490 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 D+ +++ +D Y D+ + + P Sbjct: 491 LSADNNLRYCEDTYKYDSSLLEAMNNLNLKP 521 >gi|237715634|ref|ZP_04546115.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229444343|gb|EEO50134.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 518 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSR 234 L VN+ R + G +YV+ N+ A L+A+ E L + VG V +TP+L SR Sbjct: 248 LLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSR 307 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W Sbjct: 308 IYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGK 367 Query: 295 --NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 368 GVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDF 427 Query: 353 DVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYISAW 396 +LLK+ I + R+ L +P+ Y + + Sbjct: 428 AFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVY 487 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 D+ +++ +D Y D+ + + P Sbjct: 488 LSADNNLRYCEDTYKYDSSLLEAMNNLNLKP 518 >gi|262408643|ref|ZP_06085189.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262353508|gb|EEZ02602.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 513 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 19/271 (7%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSR 234 L VN+ R + G +YV+ N+ A L+A+ E L + VG V +TP+L SR Sbjct: 243 LLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSR 302 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W Sbjct: 303 IYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGK 362 Query: 295 --NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 363 GVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDF 422 Query: 353 DVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYISAW 396 +LLK+ I + R+ L +P+ Y + + Sbjct: 423 AFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVY 482 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 D+ +++ +D Y D+ + + P Sbjct: 483 LSADNNLRYCEDTYKYDSSLLEAMNNLNLKP 513 >gi|300778249|ref|ZP_07088107.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300503759|gb|EFK34899.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 468 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 7/250 (2%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I+++ +N+ R++ + Y+LVNIPA SL+ V+ K L VIVG+ +P Sbjct: 215 EAEIKKVAINMERLRWM--GISSDAYLLVNIPAYSLDFVQKDKT-LHYKVIVGKPSTPSP 271 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +L SR++ P W +P++I K+M+ + ++ QYL++++ + D GK V V Sbjct: 272 VLKSRVDYFTTAPDWKVPQNIFIKEMLPKIIKNSQYLEEHHYSLYDRSGKIVPVTSAKLK 331 Query: 290 SPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + RQ G NA+ + F + Y+HDT + LF R + GC+RV Sbjct: 332 QAYRKPYQYSIRQSSGCDNALGAVVFRFSNSYGVYLHDTSQKQLFEKTQRALSHGCIRVE 391 Query: 348 NIIDLDVWLLKDTPTWSR-YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 N DL LLK T ++ + + L VP+ Y++ K+ + F Sbjct: 392 NAGDLAAQLLKHDGTEDEIPLMKSFMDRYERKDFVLKQPVPIMITYLTCLV-KNGKMVFY 450 Query: 407 DDIYGLDNVH 416 +DIY LD V Sbjct: 451 NDIYNLDPVL 460 >gi|312115661|ref|YP_004013257.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220790|gb|ADP72158.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 569 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 122/254 (48%), Gaps = 4/254 (1%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 ++L N+ + + + +G YV NIP + V+NG+V + ++ G++D+QTP Sbjct: 256 SAEAKRLLANMEQWRWMPA-DLGDLYVWNNIPEYTQRVVKNGEVVRKERIVTGQLDKQTP 314 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + + +I F P W++P SI ++++ L++ +++ + + D+ G+ V ++W Sbjct: 315 VFTRTLKKITFKPTWIVPESIKVREILPSLQRGGGMMREWQLELRDKDGQTVDWRRINWY 374 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT--PEPILFNNVVRFETSGCVRVR 347 + F Q G + M K F S++ +MHD P+ +FN R + GC+RV+ Sbjct: 375 RTDIRIFNVVQPNGAKSVMGKVKFSFPSQHTVFMHDAYPPDKWMFNKARRTYSHGCMRVQ 434 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKT-TPVKLATEVPVHFVYISAWSPKDSIIQFR 406 N I L LLK+ + + + V+T + +P+H Y +A D + Sbjct: 435 NPIGLAEILLKEDKGFEAAQVRDAVRTGGNDNEFDIERRIPIHMTYFTALVGDDGKLHTF 494 Query: 407 DDIYGLDNVHVGII 420 D+YG + + Sbjct: 495 PDVYGHERRITLAL 508 >gi|260642730|ref|ZP_05859514.1| putative periplasmic protein [Bacteroides finegoldii DSM 17565] gi|260620827|gb|EEX43698.1| putative periplasmic protein [Bacteroides finegoldii DSM 17565] Length = 512 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 19/274 (6%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPIL 231 +L +NL R + G +YV+ N+ A L+AV E L + VG V +TP+L Sbjct: 239 WDRLLLNLERARWQYALDKGKKYVVANVAAFMLQAVNEETDSILEMRICVGSVRNKTPLL 298 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 299 SSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGTQVDPHSIKWAKY 358 Query: 292 EPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + +QD N++ F + + Y+HDTP F R + GCVR++ Sbjct: 359 AGKGVPYTVKQDNKTGNSLGRIIFRFPNPYSVYLHDTPSRWAFMRKNRAVSHGCVRLQKA 418 Query: 350 IDLDVWLLKDTPTWSRYHIEEVV----------------KTRKTTPVKLATEVPVHFVYI 393 +D +LL++ I + R+ L VP+ Y Sbjct: 419 LDFAFFLLEEPDELLEDRIRIAMDLKPISEEGKKLPISAAYRELKHYSLEKYVPLFIDYQ 478 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + + D+ + + DDIY D + + + P Sbjct: 479 TVYLSADNNLMYCDDIYKYDPSLLKAMTDLDLKP 512 >gi|323136049|ref|ZP_08071132.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322399140|gb|EFY01659.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 537 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 81/407 (19%), Positives = 129/407 (31%), Gaps = 73/407 (17%) Query: 21 PMGLSLVEKPIHASVLDEIINE----SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L I L +I + R + + P Sbjct: 197 AYALQARGGRIQPGRLSRLIGAKTTLPDPAQAVAEVAAAGYRASETLQAFNPPH--YGYQ 254 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLG-NSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 Q + +A + G + G + L+ R Sbjct: 255 QLREKLAELHSQRAAGLAGAERVASAEEGLQTDADPPPLKSR------------------ 296 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A ++ N+ R + L + +G Sbjct: 297 ----------------------KRRAASAGGGSTSALEAEIVANMERWRWLP-RDLGDER 333 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNIP L V G V R+ VIVG+ TPI + I+ NP W +P+SIIQK+ Sbjct: 334 IEVNIPDFELAVVRGGMVTHRTRVIVGKEQTPTPIFSDEMVEIIVNPSWYVPQSIIQKEW 393 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + + G+ V RQ PG+ NA+ K F Sbjct: 394 HGGVGA--------GYQVSYRNGQMV----------------VRQPPGEKNALGRIKFVF 429 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + YMHDTP LF R + GC+RV + L +L WS +++++ Sbjct: 430 PNDFAVYMHDTPSRGLFAASHRAFSHGCMRVDDPFALAGAVLGPGSGWSEARVKKLI-GP 488 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + L+ +PVH Y +A+ + + R D+YG + L Sbjct: 489 SERYINLSKPLPVHIQYFTAYVDEGGRLVQRPDLYGYSARVRKALGL 535 >gi|262361436|gb|ACY58157.1| hypothetical protein YPD4_1249 [Yersinia pestis D106004] Length = 205 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 62/190 (32%), Positives = 94/190 (49%), Gaps = 6/190 (3%) Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVD 287 + S +N ++ NP W +P S++++D++ R D Y + N ++ + +D Sbjct: 1 MSSALNNVVVNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMID 60 Query: 288 WN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W+ SP + RQ PG N++ K S + Y+HDTP LF +R +SGCVR Sbjct: 61 WSIISPNNFPYRLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVR 120 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V DL LL+D W+ + VK TT V + VPV Y++AW +D QF Sbjct: 121 VNKASDLANMLLQDA-GWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQF 179 Query: 406 RDDIYGLDNV 415 R DIY D + Sbjct: 180 RTDIYNYDKM 189 >gi|262040976|ref|ZP_06014198.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041670|gb|EEW42719.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 466 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 5/184 (2%) Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSP 291 +N ++ NP W +P ++ +KD++ +R +P YL+ + ++ + VDW++ Sbjct: 266 ALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTI 325 Query: 292 EPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 N FR Q PG N++ K S + Y+HDTP LF VR +SGCVRV Sbjct: 326 TENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKA 385 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +L LL+D W+ I + +K T V + +PV+ Y++A+ D Q+R DI Sbjct: 386 SELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDI 444 Query: 410 YGLD 413 Y D Sbjct: 445 YNYD 448 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 6/100 (6%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + S++N + + I P + Sbjct: 172 YLHFISGIPTQGTRWLYSSTPYKMATPPLSVINQWQLALDNGSLPAFIAGLAPRHPQ--Y 229 Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRL 114 +++ + WP++ L G S + L Sbjct: 230 EAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDIGAL 267 >gi|332880541|ref|ZP_08448215.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681529|gb|EGJ54452.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 508 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 130/340 (38%), Gaps = 34/340 (10%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLF-QMRHGLDPSGMVDSSTLEAMNVPVDLR-- 172 RL + D +D ESA + F L G + R Sbjct: 169 NRLEQT-DTTQKAPFRRLYDIETESADQEFVHKALSLLKDGNFTDFFRDIQPDNPLYRQL 227 Query: 173 ------------IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTV 219 R+ VN+ R + +YV VN+ AA+L AV+ K L + Sbjct: 228 TDHYLQTQNPETRRKAIVNIERSRWRTPFAAHDKYVWVNLAAATLYAVDENKPEYLDMKI 287 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KG 278 +G +TP+L SRI R+ NPYW IP SI++K++ D Y N + ++ G Sbjct: 288 CIGSPKNKTPMLQSRIERVDMNPYWNIPYSIVKKEIAPRHAGDEAYFSRNRYRIFNKETG 347 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 +E+ V + + RQD G+ N++ F + + Y+HDT F R Sbjct: 348 EELPPAAVTSDMLTSGRYRVRQDNGEGNSLGRLIFRFPNNFSIYLHDTNNRQAFKRTNRA 407 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV-------------KTRKTTPV---KL 382 + GC+R+ ++L V+LL + + E + K + V + Sbjct: 408 ISHGCIRIEKPLELAVFLLNSPEEKTVNKLREAIGLPPLNSSVPIEKKEGEQLKVGIQRF 467 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +PV Y + + D + D YG D + + + Sbjct: 468 DPSIPVVIDYYTLYPKPDGGWEESPDPYGYDEILLKKLEA 507 >gi|289804603|ref|ZP_06535232.1| hypothetical protein Salmonellaentericaenterica_09007 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 443 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 85/347 (24%), Positives = 139/347 (40%), Gaps = 53/347 (15%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 103 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 160 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-------- 126 A A+ + WP+L L G S V LRE L +G LD Sbjct: 161 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG 218 Query: 127 ---------------------------------SKGLSVAFDAYVESAVKLFQMRHGLDP 153 + A+D + AVK FQ GL Sbjct: 219 DNTSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGA 278 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T +N+ R L +N+ R++ L + ++VNIPA SL +NG Sbjct: 279 DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQ 336 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + + Sbjct: 337 VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTV 396 Query: 274 IDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFY 316 + + + +VDW + P N FR Q PG N++ K Sbjct: 397 MRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMP 443 >gi|190149392|ref|YP_001967917.1| hypothetical protein APP7_0123 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914523|gb|ACE60775.1| Uncharacterized protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 213 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 5/198 (2%) Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 +IVGR DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG Sbjct: 1 MIVGRDDRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKG 60 Query: 279 KEVFVEEVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 ++ V+W + + RQ G +A+ K S + Y+HDTP LF Sbjct: 61 NKINPRSVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKT 120 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R +SGCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++A Sbjct: 121 DRALSSGCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTA 179 Query: 396 WSPKDSIIQFRDDIYGLD 413 W ++ + DIY D Sbjct: 180 WV-ENGKVYTLPDIYKFD 196 >gi|255533072|ref|YP_003093444.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] gi|255346056|gb|ACU05382.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] Length = 512 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 76/296 (25%), Positives = 120/296 (40%), Gaps = 51/296 (17%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--------- 224 + + VN+ R++ L +G +V VNIP +L V VG Sbjct: 215 KTVMVNMERLRWKLP-DLGEEHVEVNIPDFTLTWFSGQDTLSHMKVCVGGAREKDYAEKI 273 Query: 225 --------------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 + +TPIL+S++N I NP W IP SI + ++ +DP YL +NN Sbjct: 274 KLYLKSGNLDDKPKNHETPILYSKLNSIQVNPIWNIPVSIARSEIYWQAIRDPYYLSNNN 333 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 I + + + + WN F +Q G+ NA+ K F + ++ Y+HDT Sbjct: 334 IKVYYKGQLVTDPDTIQWNKYPREKLPFQFKQGSGEGNALGKFKFIFDNGSSIYLHDTNN 393 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE---------------EVVK 373 F R + GCVRV ++ L+KD + + +E + + Sbjct: 394 KSAFARNNRAISHGCVRVEKPLEFAEMLVKDKYQYDQLRMEVNLPPVDTTKMELYRKKLA 453 Query: 374 TR---------KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + K VP+ YI+AWS + IQFR D+YGLD + Sbjct: 454 KKADTLNIFQLKPKWFGTKKPVPLIINYITAWSQ-NGTIQFRPDVYGLDETLYAAM 508 >gi|330996788|ref|ZP_08320660.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841] gi|329572510|gb|EGG54161.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841] Length = 508 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 128/340 (37%), Gaps = 34/340 (10%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLF-QMRHGLDPSGMVDSSTLEAMNVPV----- 169 RL + D +D ESA + F + G + Sbjct: 169 NRLEQT-DTTKKAPFRRLYDTETESANQEFIHKALSILKDGNFTDFFRDIQPDNPLYYQL 227 Query: 170 ---------DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTV 219 R+ +N+ R + + +YV VN+ AA L AV+ K L + Sbjct: 228 TNLCLQTQNPETRRKAIINIERSRWRTPRAAHDKYVWVNLAAAKLYAVDEKKPEYLDMKI 287 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KG 278 +G +TP+L SRI R+ NPYW IP SI++K++ + Y N + + G Sbjct: 288 CIGSPKSKTPMLQSRIERVDMNPYWNIPYSIVKKEIAPRHAGNEAYFSRNRYRIFSKETG 347 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 +E+ V + + RQD G+ N++ F + + Y+HDT F R Sbjct: 348 EELPPAAVTADMLTSGRYRVRQDNGEGNSLGRLIFRFPNNFSIYLHDTNNKQAFKRTNRA 407 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV-------------KTRKTTPV---KL 382 + GC+R+ ++L V+LL + + E + K + V + Sbjct: 408 ISHGCIRIEKPLELAVFLLDTPEEKTVNRLREAIGLPPLNSSIPIEKKEGEPLKVGIQRF 467 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +PV Y + + D + D YG D + + + Sbjct: 468 DPSIPVVIDYYTLYPKPDGGWEESPDPYGYDEILLKKLEA 507 >gi|85374905|ref|YP_458967.1| hypothetical protein ELI_10390 [Erythrobacter litoralis HTCC2594] gi|84787988|gb|ABC64170.1| hypothetical protein ELI_10390 [Erythrobacter litoralis HTCC2594] Length = 473 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 18/257 (7%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ-T 228 R + ++ N+ R + L + +G +Y++ N+P L N K+ IVG+ R T Sbjct: 209 SERFKLIRANMDRWRWLP-RDLGGQYLMTNVPEYQLRLTVNDKIVRTYKTIVGKPGRTAT 267 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 P L + ++ NP W +P+SI++ + + A + +P + + V Sbjct: 268 PQLAEVVEGVILNPTWTVPQSIVKGEGLGAKVLNNPGWARAKGYKATKGANGWVT----- 322 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 Q PG N++ K++ +R+ ++HDTP LF R + GC+R Sbjct: 323 ----------VVQQPGPTNSLGRMKLDMPNRHAIFLHDTPSRNLFGTSNRALSHGCIRTE 372 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 +L + L + E++ + + T V ++PV+ Y + + D + Sbjct: 373 RATELALTLSILQAGLTADEGVELLNSGEYTRVGFEKKMPVYITYFTMATDIDGKLSTFK 432 Query: 408 DIYGLDNVHVGIIPLPE 424 D+YG D+ P Sbjct: 433 DLYGRDDAVKAAFDAPR 449 >gi|284036319|ref|YP_003386249.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] gi|283815612|gb|ADB37450.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] Length = 403 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 9/258 (3%) Query: 159 SSTLEAMNVPVD--LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN-GKVGL 215 +A + +R ++ L + + ++VLVNIPA L + GK L Sbjct: 145 KRLRKASHTNPAMADSLRLIRQTLNFYRYINRFD-PDQFVLVNIPAGELNVFDRTGKRLL 203 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 VI G+ D+ TP + + I I+ PYW +P++I +M+ +++D Y+ + N+ ++D Sbjct: 204 PMQVISGKPDKMTPCMVTYIQDIVMYPYWNVPQNIALDEMLPRMKRDLSYIYNQNLQILD 263 Query: 276 EKGKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 K KEV EE+DW S + RQ G N++ K + Y+HDT LF Sbjct: 264 AKNKEVDPEEIDWESLSETNFPYRVRQASGCENSLGLLKFNLANPLAIYLHDTNSRDLFK 323 Query: 334 NVV-RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 + + + GCVRV+ ++L +L T+ + + + +K + + PV Y Sbjct: 324 STKDHWRSHGCVRVQKPVELANLIL-GAKTFDADFMNKCLIDQKPKTLP-TKKFPVFITY 381 Query: 393 ISAWSPKDSIIQFRDDIY 410 A + F +D+Y Sbjct: 382 NIADVDAAGKLHFYNDVY 399 >gi|85709388|ref|ZP_01040453.1| hypothetical protein NAP1_10923 [Erythrobacter sp. NAP1] gi|85688098|gb|EAQ28102.1| hypothetical protein NAP1_10923 [Erythrobacter sp. NAP1] Length = 460 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 113/271 (41%), Gaps = 21/271 (7%) Query: 159 SSTLEAMNVPVDLRIRQ---LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + E + V + +Q N+ R + L + +G +Y++ N+P L ++ Sbjct: 183 ARLREELAVTPAEEAEKRKLIQANMDRWRWL-ARDLGTQYLITNVPEYQLRLTVRDRIIS 241 Query: 216 RSTVIVGRVDRQ-TPILHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHM 273 +VG+ R TP L + ++FNP W +P+SI++ + + + +P + + N Sbjct: 242 TYRTVVGKPGRTATPQLAEMVEGVVFNPTWTVPQSIVKGEGLGERVLGNPGWARANGYTA 301 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + Q PG N++ K+E + + + HDTP LF Sbjct: 302 TRGSNGWIT---------------VVQQPGPGNSLGRMKLEMPNPHAIFFHDTPSRHLFA 346 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 N R + GC+R ++L + + +R E+ + K T V + ++P + Y Sbjct: 347 NANRALSHGCIRTERALELAITMAILGKGATRDEAVEIATSGKYTKVMIEKQLPAYITYF 406 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 + + ++ DDIYG D + + P Sbjct: 407 TMGVDIEGELRTFDDIYGRDAPVLASLDKPR 437 >gi|296283068|ref|ZP_06861066.1| hypothetical protein CbatJ_05580 [Citromicrobium bathyomarinum JL354] Length = 468 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 107/264 (40%), Gaps = 18/264 (6%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A P R + +Q N+ R + L + +G +Y++ N+P L N K+ IVG+ Sbjct: 199 AKAKPGSKRYKLIQANMDRWRWLP-RDLGHQYLITNVPEYQLRLTVNDKIMRTYRTIVGK 257 Query: 224 VDRQ-TPILHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEV 281 R TP L + ++ NP W +P+SI++ + + + +P + + Sbjct: 258 PGRTATPQLAESVEGVILNPNWTVPQSIVKGEGLGERVLGNPSWAASKGYKATRGANGYI 317 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 Q PG NA+ K++ +R+ + HDTP LF+ R + Sbjct: 318 S---------------VVQGPGPGNALGRMKLDMPNRHAIFFHDTPSRGLFSQADRALSH 362 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GC+R +L + L + E + + + T V+ +++P + Y + + D Sbjct: 363 GCIRTERATELALTLAILQAGLTADEGVEKLASGEYTRVEFNSKMPAYITYFTMGTTIDG 422 Query: 402 IIQFRDDIYGLDNVHVGIIPLPED 425 + DIY D + P Sbjct: 423 EMATFKDIYDRDAPVLAAFEAPRK 446 >gi|149275869|ref|ZP_01882014.1| hypothetical protein PBAL39_21400 [Pedobacter sp. BAL39] gi|149233297|gb|EDM38671.1| hypothetical protein PBAL39_21400 [Pedobacter sp. BAL39] Length = 532 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 79/335 (23%), Positives = 131/335 (39%), Gaps = 51/335 (15%) Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + ++ Q G + + + L+A + R + +N+ R++ L MG YV Sbjct: 198 DLAKLLRDIQPSSGQYLALQKELAALKAGGLGSSASARTILINMERLRWKLP-DMGNEYV 256 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRV-----------------------DRQTPILHS 233 VNIP SL V VG + +TPIL+S Sbjct: 257 EVNIPDFSLTWFNKQDTVSHMKVCVGGAREANYKEKIATYLKTKSLDDKPKNHETPILYS 316 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 ++N I NP W IP SI + ++ + R+DP YL +NNI++ + + + WN Sbjct: 317 KLNSIQVNPIWNIPVSIARSEIYWMARKDPFYLSNNNINVYYKGKLVNDPDTIQWNKYPR 376 Query: 294 PNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 F +Q G NA+ K F + ++ Y+HDT F R + GCVRV ++ Sbjct: 377 EKLPFQFKQGSGGGNALGKFKFIFDNGSSIYLHDTNNKTAFGRANRAISHGCVRVERPLE 436 Query: 352 LDVWLLKDTPTWSRYHIE---------------EVVKTR---------KTTPVKLATEVP 387 L+ + + +E + + + K VP Sbjct: 437 FAEKLVGSKYQYDQLRMEVNLPPLDTTKMNVYRKKLAQKADTLNAFQLKPKWFGTKKPVP 496 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + Y++AWS + I+FR D+Y LD + Sbjct: 497 LIINYVTAWSQ-NGKIEFRPDVYRLDETLWTAMQK 530 >gi|288928347|ref|ZP_06422194.1| lipoprotein [Prevotella sp. oral taxon 317 str. F0108] gi|288331181|gb|EFC69765.1| lipoprotein [Prevotella sp. oral taxon 317 str. F0108] Length = 460 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 73/310 (23%), Positives = 134/310 (43%), Gaps = 27/310 (8%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM- 191 ++ V+ ++ Q ++ L + + ++ RIR L N+ R + Sbjct: 153 VYNDSVDIFLRQAQPQNAL---YALLIKHFKGKDLSETDRIRLL-CNVERSRWRQTDYPQ 208 Query: 192 -GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +YVLVN+P+ L+A+E V L + G +D +TP+L+S I R+ NP W+IPRSI Sbjct: 209 NHRKYVLVNVPSYHLDAIEGDSV-LTMRMACGTLDTKTPLLNSHIMRMDVNPQWIIPRSI 267 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I+K+++ +P Y + + +++ G+ V V P++ Q+ G+ N++ Sbjct: 268 IKKEVVGH-AGNPDYFERHRYFILNRPSGRRVDPANVSAGMLLNPDYFVIQEGGEGNSLG 326 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 F + + ++HDT F+ R + GC+RV+ +L V+LL I Sbjct: 327 RVVFRFNNNFSIFIHDTSSKWAFDRGSRSVSHGCIRVQKPFELAVFLLGKKDKTLIDKIN 386 Query: 370 EVV-------KTRKTTP-----------VKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 + K + VK+ VP+ Y + + + D+YG Sbjct: 387 YSMQADLSKPKEGEEKRTRVDYRRLVNSVKVNPNVPLFITYYTLYPDVKGKMHTYADVYG 446 Query: 412 LDNVHVGIIP 421 D V + Sbjct: 447 YDKVLYRYLR 456 >gi|260912258|ref|ZP_05918809.1| peptidoglycan binding protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633559|gb|EEX51698.1| peptidoglycan binding protein [Prevotella sp. oral taxon 472 str. F0295] Length = 549 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 137/322 (42%), Gaps = 29/322 (9%) Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 G L ++ V ++ Q ++ L + + ++ R+R L N+ Sbjct: 233 GFYP--TALRKIYNDSVAIFLRESQPQNALYAQLV---KHFKGKSLSAADRVRLL-CNIE 286 Query: 182 RIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + + +YVLVN+P+ L+A+E V L + G +D +TP+L+S I R+ Sbjct: 287 RSRWRQDDYPQNHRKYVLVNVPSFHLDAIEGDSV-LTMRMACGTLDTKTPLLNSHIMRMD 345 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFIF 298 NP W+IPRSII+K+++A + Y + +++ G+ V V P++ Sbjct: 346 VNPQWIIPRSIIKKEVIAH-AGNTDYFDRHRYFILNRSTGRRVDPCSVSAGMLLTPDYFV 404 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q+ G+ N++ F + + ++HDT F R + GC+RV+ +L V+LLK Sbjct: 405 VQEGGEGNSLGRIVFRFNNNFSIFIHDTSSKWAFERGNRGVSHGCIRVQKPFELAVFLLK 464 Query: 359 DTPTWSRYHIEEVV-------KTRKT-----------TPVKLATEVPVHFVYISAWSPKD 400 D I + K + VK+ VP+ Y + + Sbjct: 465 DKDKSLIDKITYSMQADLSKPKDGEEPKPRVDYRRLVNSVKVNPNVPLFITYYTLYPDMA 524 Query: 401 SIIQFRDDIYGLDNVHVGIIPL 422 IQ D+YG D V + Sbjct: 525 GRIQTYADVYGYDQVLYRYLRN 546 >gi|163759199|ref|ZP_02166285.1| hypothetical protein HPDFL43_05525 [Hoeflea phototrophica DFL-43] gi|162283603|gb|EDQ33888.1| hypothetical protein HPDFL43_05525 [Hoeflea phototrophica DFL-43] Length = 250 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 109/233 (46%), Positives = 154/233 (66%), Gaps = 2/233 (0%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAF 84 S S ++ IIN +D+FD +R + PI S +TI E+A+ Sbjct: 18 SAAGAAKAQSTIEAIINSPRRGSWDDQFDAKSSRSVAKTATRYPISSADTIGFVERAVFD 77 Query: 85 YQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 YQDI++RGGWP +P + L +G S V+ LR+RLI SGDL + GLS AFD+YV+ AVK Sbjct: 78 YQDIIARGGWPFVPATKKLRMGVSEPEVRLLRQRLIASGDLSANTGLSNAFDSYVDGAVK 137 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ RHGL P G++ + + +A+NV D+R+ QL+ NL+R++ + +G RYV+VNIPAA Sbjct: 138 KFQARHGLPPDGILGNYSYQALNVSADVRLGQLETNLVRLRSMSGF-LGDRYVMVNIPAA 196 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +EAVENG+V LR T IVG++DRQTPIL+S+I+ I+ NPYW PR +KD++ Sbjct: 197 QIEAVENGRVVLRHTAIVGKIDRQTPILNSKIHEIILNPYWTSPRLDHRKDIV 249 >gi|145637696|ref|ZP_01793349.1| hypothetical protein CGSHiHH_01956 [Haemophilus influenzae PittHH] gi|145269098|gb|EDK09048.1| hypothetical protein CGSHiHH_01956 [Haemophilus influenzae PittHH] Length = 461 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 6/218 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSEQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 L LLK+ W+ V+ ++K T + ++ PV Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKNTSAPIRSDNPVF 448 >gi|326388316|ref|ZP_08209912.1| hypothetical protein Y88_3197 [Novosphingobium nitrogenifigens DSM 19370] gi|326207048|gb|EGD57869.1| hypothetical protein Y88_3197 [Novosphingobium nitrogenifigens DSM 19370] Length = 386 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 23/244 (9%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R L N+ R + L Q +G YVLVN A + +G+ V+VG+ TP Sbjct: 152 ARRATLATNMDRWRWLP-QSLGADYVLVNAAAFEVRLWRHGQQVGTWPVVVGKTKSPTPT 210 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 ++++ + FNP+W IP +I+++ + ++R+ P + Sbjct: 211 FSAQVSGVTFNPWWDIPPAIVRESIGGMMRRHPALARQRGYI------------------ 252 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 +RQ PG NA+ K+ + N Y+HDTPE LF R + GC+RV + I Sbjct: 253 --HTGASYRQKPGPANALGQMKLVMPNPFNVYLHDTPEKKLFARDTRAFSHGCIRVSDAI 310 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L++D S ++ ++ T +TT V L +PV+ Y +A + D + DIY Sbjct: 311 GFATTLVQDVK--SADEVKAIIATGRTTTVDLPMHLPVYVTYFTATTRSDGTLAILPDIY 368 Query: 411 GLDN 414 D Sbjct: 369 KRDG 372 >gi|149185534|ref|ZP_01863850.1| hypothetical protein ED21_20954 [Erythrobacter sp. SD-21] gi|148830754|gb|EDL49189.1| hypothetical protein ED21_20954 [Erythrobacter sp. SD-21] Length = 475 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 113/271 (41%), Gaps = 25/271 (9%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 RI+ ++ N+ R + L Q +G +Y++ N+P L NG++ IVG+ Sbjct: 201 ATATDPARIKLIRANMDRWRWLP-QDLGRQYLVTNVPEYMLRLTVNGRIIKSYRTIVGKP 259 Query: 225 DRQ-TPILHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEVF 282 R TP L + ++FNP W +P+SI+ + + + +P + ++ + Sbjct: 260 GRTATPQLAEMVEAVIFNPTWTVPQSIVVGEGLGNKVLNNPGWARNAGYKATKGANGWIT 319 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 Q PG N++ K++ + + ++HDTP LFN R + G Sbjct: 320 ---------------VVQQPGPTNSLGLMKLDMPNEHAIFLHDTPSRHLFNQDARALSHG 364 Query: 343 CVRVRNIIDLD---VWLLKDTPTWSRYHIEEVVK----TRKTTPVKLATEVPVHFVYISA 395 C+RV+ +L L + I+E V + + T ++ + PV+ Y + Sbjct: 365 CIRVKGARELAMTMSMLGNASNRADIPAIQEEVSEITMSGEYTRYEMKKQWPVYITYFTM 424 Query: 396 WSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 + + ++ DIY D + + P Sbjct: 425 ATDVNGEMKTFRDIYDRDKPVLAALDAPRQE 455 >gi|288801197|ref|ZP_06406652.1| peptidoglycan-binding domain 1 [Prevotella sp. oral taxon 299 str. F0039] gi|288331808|gb|EFC70291.1| peptidoglycan-binding domain 1 [Prevotella sp. oral taxon 299 str. F0039] Length = 460 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 83/379 (21%), Positives = 159/379 (41%), Gaps = 46/379 (12%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR--ERLIISGDLDPSKGLSVA 133 KA+ Y I R G+ P L+ +++ + ++ +RL ++ + Sbjct: 89 YSLTKALFRY-AIGERFGYVT-PSYILNRLDTAETKNGVKNYQRL----YDIHTESVDTL 142 Query: 134 FDAYVESAVKL------FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV--NLMRIKK 185 F + ++V FQ L + + + + + RI +++V N+ R + Sbjct: 143 FVNQLVASVTNDSLQSFFQK---LKTNRSLFKN-FQFLLRKTSTRISKMKVLVNMERCRW 198 Query: 186 LLEQKMG--LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 +YVLVN+P+ L+AV+ V V G + +TP+L+S I R+ NP Sbjct: 199 RHNDYPELHKKYVLVNVPSFYLQAVDEDSV-FSMRVACGALSTKTPLLNSTIERMDINPQ 257 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W+IP SI++K +++ L + Y ++ + GKE+ + EV + + Q Sbjct: 258 WIIPLSIVKKQIISQL-GNRHYFDSHSYFIRHVATGKEIDISEVTPDMLLSGAYKVVQRG 316 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ F + + Y+HDT F+ R + GC+RV ++L ++LL+D Sbjct: 317 GEGNALGRIVFRFPNNFSVYLHDTSSREAFSRFDRGVSHGCIRVEKPLELAIFLLQDKEE 376 Query: 363 WSRYH--------------------IEEVVKTRKTTPVK-LATEVPVHFVYISAWSPKDS 401 +E + ++ K L VP+ Y + + + Sbjct: 377 ALIDKLIYSTTVDMKTDSRNNEKDCLENKIDRKRLINSKSLKPSVPLFITYYTLYPDEKG 436 Query: 402 IIQFRDDIYGLDNVHVGII 420 +++ D+YG D V + Sbjct: 437 VMRDYPDVYGYDKVIARYL 455 >gi|145641085|ref|ZP_01796666.1| hypothetical protein CGSHiR3021_08446 [Haemophilus influenzae R3021] gi|145274246|gb|EDK14111.1| hypothetical protein CGSHiR3021_08446 [Haemophilus influenzae 22.4-21] Length = 288 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 6/218 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 63 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 119 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 120 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 179 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 180 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSDQ 238 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 L LLK+ W+ V+ ++KTT + ++ PV Sbjct: 239 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVF 275 >gi|218461005|ref|ZP_03501096.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Kim 5] Length = 245 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 91/212 (42%), Positives = 136/212 (64%), Gaps = 4/212 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD ++N +D+FD +R I S+ PI+ +++A ++AI YQ I + Sbjct: 35 QSALDGLLNAPRRGNWDDQFDAKAASRTATAIVSNTPILGPQSVASAQQAIMQYQQIAAA 94 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG S +VQ LR+RL I+GDL GLS AFD+YV+ AVK FQ RH Sbjct: 95 GGWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGLSSAFDSYVDGAVKRFQARH 154 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL N++R++ + +G R+++VNIPAA +EAVE Sbjct: 155 GLPADGVLGEFTLKAMNIPADVRLQQLNTNIVRLQTFP-EDLGRRHLMVNIPAAYVEAVE 213 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 +G V R T +VGR+ R T +++S+I ++ N Sbjct: 214 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILN 245 >gi|261880240|ref|ZP_06006667.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333074|gb|EFA43860.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 458 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 116/276 (42%), Gaps = 31/276 (11%) Query: 176 LQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 + VN+ R + ++ +YVLVNIP+ L AV+ KV L + G +TP++ S Sbjct: 183 ILVNMERCRWRMQDNPQRHEKYVLVNIPSFHLRAVDGDKV-LTMRIAFGSNKNKTPLIVS 241 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPE 292 I R+ NP WV+P+SI++K ++ L + Y N + + G+ V V V E Sbjct: 242 AIKRMDVNPQWVMPKSIVRKSVVPQL-GNINYFTQNRYFIRNRQTGEHVDVSSVSPEMLE 300 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 ++ Q G+ NAM F + + Y+HDT +F+ VR + GC+RV +L Sbjct: 301 SGDYFVIQRGGEGNAMGRIVFRFDNNLSIYLHDTSSRTIFDRSVRNVSHGCIRVEKPFEL 360 Query: 353 DVWLLKDTPTWSRYHIEEVVK--------TRKTTP------------------VKLATEV 386 ++L I + ++ V + V Sbjct: 361 SKFVLAKKDDKLVDRINYSMHADVSPVNMKKEEMTERMMLVADTLDRSRLIGSVNIKPMV 420 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 P+ +Y + + I+ D+YG D++ + Sbjct: 421 PIFILYYTMYPDASGKIETFSDVYGYDSLIYQQLRN 456 >gi|299140698|ref|ZP_07033836.1| periplasmic protein [Prevotella oris C735] gi|298577664|gb|EFI49532.1| periplasmic protein [Prevotella oris C735] Length = 472 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 72/276 (26%), Positives = 126/276 (45%), Gaps = 33/276 (11%) Query: 176 LQVNLMRIKKLLEQKMG--LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 + N+ R + + G +YVLVNIP+ L AV NG+ L + G + +TP+L S Sbjct: 193 ILCNMERCRWRYYDEPGKHEKYVLVNIPSFHLRAV-NGREVLEMKIGCGTTETKTPLLTS 251 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPE 292 RI R+ NP WVIPRSI +K++ D QY + + D G++V + + + Sbjct: 252 RIMRMDINPQWVIPRSITEKNIANHF-GDRQYFDSHRYFVRDRKTGQKVPFDRITQDMFH 310 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +++ Q G N++ F + + ++HDT +F+ R + GC+RV DL Sbjct: 311 SKDYLVIQKGGIGNSLGRIIFRFNNSFSVFLHDTNRHNVFSQENRGVSHGCIRVERPFDL 370 Query: 353 DVWLLKDTP----------------TWS---RYHIEEVVKTRKTTP---------VKLAT 384 V+LLKD S ++++K +K +K+ Sbjct: 371 AVFLLKDKNESLIRKLHYSMTAEIGGESTVLPEEEKKMIKKQKPDTLQRSMLISSLKVEP 430 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++P+ Y + + + +Q+ D+YG D V ++ Sbjct: 431 QIPIFITYFTIYPDVNGKLQYFSDVYGYDKVIFDVL 466 >gi|317502835|ref|ZP_07960937.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315666050|gb|EFV05615.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 509 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 124/294 (42%), Gaps = 34/294 (11%) Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQ--KMGLRYVLVNIPAASLEAVENGKVGLRS 217 +L A+ + R R + N+ R + + + +YVLVNIP+ L V V Sbjct: 215 QSLLAITRDKNER-RTILCNMDRCRWRYKDTPDLHEKYVLVNIPSFHLRMVNRDDV-REM 272 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-DE 276 + G D +TP+L SRI R+ NP W++PRSII+K ++ D Y ++ + + Sbjct: 273 KIGCGSKDTKTPLLTSRIIRMDVNPQWIVPRSIIKKSIVNHC-GDRHYFDSHHFFVRHRK 331 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 GK++ +++ +++ Q G N++ F + + ++HDT + +F+ Sbjct: 332 TGKKIPFDQITREMLLSKDYLVIQTGGLGNSLGRIIFRFPNGFSVFLHDTNQQNIFSQTD 391 Query: 337 RFETSGCVRVRNIIDLDVWLLKD-------------TPTWSRYHIEEVVKTRKT------ 377 R + GCVRV DL V+LLKD T + + K Sbjct: 392 RDVSHGCVRVERPFDLAVFLLKDKEASIIRKLHYSMTAKIGEEGVNSSEEEHKNMEKTRP 451 Query: 378 ---------TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + +VP++ Y + + +Q D+YG D V + Sbjct: 452 DTLKKSLILRSLSVEPQVPIYLTYFTIYPDGKGKLQHFADVYGFDKVIFKSLRN 505 >gi|315608208|ref|ZP_07883200.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250177|gb|EFU30174.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 514 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 26/273 (9%) Query: 174 RQLQVNLMRIKKLLEQKMGLR--YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 ++ N+ R + L+ YVLVNIP+ L AV+ V L V G + +TP+L Sbjct: 242 AKILCNIERCRWRLKDYPQRYKKYVLVNIPSFKLCAVDGDSV-LEMRVGCGTFETKTPLL 300 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNS 290 +S+I R+ NP W+IPRSI++K ++ + D Y + + + G+E+ +++ Sbjct: 301 YSQIKRMDINPQWIIPRSIVKKSIIKHV-GDKNYFESRGYLIKNIHTGEEIDLDKASLGM 359 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 E F Q GK N++ F + + Y+HDTP F+ R + GC+RV+ Sbjct: 360 LENREFAVIQRGGKGNSLGRIVFRFDNDFSVYLHDTPSRDFFSREDRGVSHGCIRVQKPF 419 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKT-------RKTTPVKLAT--------------EVPVH 389 +L ++L + I ++ K + + T +VP+ Sbjct: 420 ELAKFILGNANDELIRKIAYSIQADISIHRDDKNKSLPIDTLNRKLLIRTCYVKPKVPLF 479 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +Y + + K+ ++ F DD+YG D V + Sbjct: 480 IIYFTIYPDKNGVLTFYDDVYGYDQVIYRQLKN 512 >gi|288925831|ref|ZP_06419762.1| putative periplasmic protein [Prevotella buccae D17] gi|288337486|gb|EFC75841.1| putative periplasmic protein [Prevotella buccae D17] Length = 505 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 26/273 (9%) Query: 174 RQLQVNLMRIKKLLEQKMGLR--YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 ++ N+ R + L+ YVLVNIP+ L AV+ V L V G + +TP+L Sbjct: 233 AKILCNIERCRWRLKDYPQRYKKYVLVNIPSFKLCAVDGDSV-LEMRVGCGTFETKTPLL 291 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNS 290 +S+I R+ NP W+IPRSI++K ++ + D Y + + + G+E+ +++ Sbjct: 292 YSQIKRMDINPQWIIPRSIVKKSIIKHV-GDKNYFESRGYLIKNIHTGEEIDLDKASLGM 350 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 E F Q GK N++ F + + Y+HDTP F+ R + GC+RV+ Sbjct: 351 LENREFAVIQRGGKGNSLGRIVFRFDNDFSVYLHDTPSRDFFSREDRGVSHGCIRVQKPF 410 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKT-------RKTTPVKLAT--------------EVPVH 389 +L ++L + I ++ K + + T +VP+ Sbjct: 411 ELAKFILGNANDELIRKIAYSIQADISIHRDDKNKSLPIDTLNRKLLIRTCYVMPKVPLF 470 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +Y + + K+ ++ F DD+YG D V + Sbjct: 471 IIYFTIYPDKNGVLTFYDDVYGYDQVIYRQLKN 503 >gi|284038422|ref|YP_003388352.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] gi|283817715|gb|ADB39553.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] Length = 378 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 10/254 (3%) Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVD 225 + L I Q+Q L + L + + ++VNIP+A+L ++ GK L S V+VG+ D Sbjct: 122 MSDSLTIEQVQETLNTYRWLNRFR-NSKRIVVNIPSATLRVIDRQGKTLLNSRVVVGKAD 180 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY-LKDNNIHMIDEKGKEVFVE 284 TP+ + I ++ PYW +PRSI+ K+M+ ++++P L N+ +ID KG+ V + Sbjct: 181 TPTPLFTAFIPSLVMYPYWNVPRSIMVKEMLPRIQKNPALVLSFLNLDVIDAKGQVVDPK 240 Query: 285 EVDWN------SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V+W+ + RQ G NA+ K S + Y+HDT F + R Sbjct: 241 TVNWSVSASAVYNGSFPYRLRQATGCANALGVLKFNVNSPYDVYLHDTNARHAFASENRQ 300 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GC+RV +L LL T +S ++ K V+L VPV Y Sbjct: 301 LSHGCIRVEKPAELANLLLGYT-RFSDDYLTSCPKNASPKTVQLPVSVPVITTYNVLDID 359 Query: 399 KDSIIQFRDDIYGL 412 IQ D+YG Sbjct: 360 AAGAIQVYPDVYGK 373 >gi|281425838|ref|ZP_06256751.1| putative cell wall degradation protein [Prevotella oris F0302] gi|281400099|gb|EFB30930.1| putative cell wall degradation protein [Prevotella oris F0302] Length = 472 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 33/276 (11%) Query: 176 LQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 + N+ R + + +YVLVNIP+ L AV NG+ L + G + +TP+L S Sbjct: 193 ILCNMERCRWRYYDEPSKHEKYVLVNIPSFHLRAV-NGREVLEMKIGCGTTETKTPLLTS 251 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPE 292 RI R+ NP WVIPRSI +K++ D QY + + D G++V + + + Sbjct: 252 RIMRMDINPQWVIPRSITEKNIANHF-GDRQYFDSHRYFVRDRKTGQKVPFDRITQDMFH 310 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +++ Q G N++ F + + ++HDT +F+ R + GC+RV +L Sbjct: 311 SKDYLVIQKGGIGNSLGRIIFRFNNSFSVFLHDTNRHNVFSQENRRVSHGCIRVERPFEL 370 Query: 353 DVWLLKDTP----------------TWS---RYHIEEVVKTRKTTP---------VKLAT 384 V+LLKD S ++++K +K +K+ Sbjct: 371 AVFLLKDKNESLIRKLHYSMTAEIGGESTVLPEEEKKMIKKQKPDTLQRSMLISSLKVEP 430 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++P+ Y + + + +Q+ D+YG D V ++ Sbjct: 431 QIPIFITYFTIYPDVNGKLQYFSDVYGYDKVIFDVL 466 >gi|103486925|ref|YP_616486.1| hypothetical protein Sala_1440 [Sphingopyxis alaskensis RB2256] gi|98977002|gb|ABF53153.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 409 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 17/251 (6%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + ++VN+ R + + + +G RYV+ N+P V G V +VG+ TP L+ Sbjct: 142 AQAIRVNMERWRWMP-RDLGERYVVSNVPEYLTRVVHGGTVIATHKAVVGKKSTPTPQLN 200 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 I+ NP W +PRSII + + A + ++P + + Sbjct: 201 PMATGIIVNPNWTLPRSIINEGIGATIARNPAAARAQGYT----------------WTGS 244 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 Q PG NA+ K+E + + Y+HDTP FN R + GC+R + Sbjct: 245 GKTLSVVQKPGPNNALGVMKMEMLNEHAIYLHDTPSKNAFNAAARAFSHGCIRTERALHF 304 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 + S E + + KTT PV+ Y + ++ D+Y Sbjct: 305 SGLMAVMFAGRSPEEFGEAIASGKTTRFGFDQPFPVYVAYWTVVPDGKGGVKKLADLYER 364 Query: 413 DNVHVGIIPLP 423 D V P Sbjct: 365 DAPVVASFARP 375 >gi|255036894|ref|YP_003087515.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] gi|254949650|gb|ACT94350.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] Length = 398 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 69/255 (27%), Positives = 118/255 (46%), Gaps = 4/255 (1%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIPAASLEAVEN-GKVGLRSTVI 220 + + L + + Q G R+VLVNI A L A+++ G+ L + Sbjct: 140 RLLKAQKKDSAAYVAQTLNAYRWIHRQIQGSPRFVLVNIRGAYLTAMDSAGQNVLTMRTV 199 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ D TP + + I+ +PYW +P+SI K++ DP+YL N I +I + G+ Sbjct: 200 VGKRDTPTPTIDTYATSIVTHPYWNVPKSIAIKEIFPKAAADPEYLSRNRIQVIGKDGQA 259 Query: 281 VFVEEVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + +E+DW + FRQ+ G+ N++ K+E + Y+HDT LF + R+ Sbjct: 260 IDPQELDWGDLTAEKFPYRFRQETGEDNSLGLLKVEIKNPLAIYLHDTNARYLFKSGQRW 319 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVRV+ DL ++ S + E + KL +PV +Y+ A Sbjct: 320 RSHGCVRVQYPTDLANYMAGSKLLDSDFMTEPDSVSHPPKWHKLQVRIPVFLLYLPADCN 379 Query: 399 KDSIIQFRDDIYGLD 413 + + D+Y + Sbjct: 380 PKGDLMYFPDVYKRE 394 >gi|307946680|ref|ZP_07662015.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770344|gb|EFO29570.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 429 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 10/292 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINE-SYHSIVNDRFDNF--LARVDMGIDSDIPIISKETI 75 L + + + +++ +N D F + +DS + + Sbjct: 141 FLRYATHVSSGRVQPNKINKALNIFPDRPKAKDLFHALETTSNFSAFLDSL--PLQTASY 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + + Y++ + GG+ +P L V L+ERL+ L + + Sbjct: 199 LRLQIRLGEYREKAANGGFTSIPKGEVLKPEMIDPRVPTLKERLVQEDFLLAEQHSGSTY 258 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 + + AVK FQ HGL+ G++ STLEA+NV ++ R+ Q+++N+ R + + +G Sbjct: 259 NGALVEAVKNFQSYHGLEVDGIIGKSTLEALNVSINDRLIQMELNMERRRWMP-DNLGDT 317 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 YV VN+ +L+ V NGK + VIVG+ TP+ + + NPYW +P SI ++ Sbjct: 318 YVFVNLADQALKVVRNGKTWHTTPVIVGKPYHATPVFSDVMTYVEVNPYWNVPYSISTRE 377 Query: 255 MMALLRQDPQYL-KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 + L+ + L + + + + KG VF ++ S F PG Sbjct: 378 YLPKLQANANALSEKKHAGISERKGSCVFKRQL--VSLFTAKLPFPAAPGPG 427 >gi|197105408|ref|YP_002130785.1| hypothetical protein PHZ_c1945 [Phenylobacterium zucineum HLK1] gi|196478828|gb|ACG78356.1| hypothetical protein PHZ_c1945 [Phenylobacterium zucineum HLK1] Length = 483 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 33/300 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + ++ + + +A+ + R G G+ + A N+ R + Sbjct: 202 AAARMNPVY-EELRAALAEHRARSG----GVATERLILA--------------NMDRARG 242 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L +G R++LVN +A L E+G+ R VIVGR TP + I F PYW Sbjct: 243 LPRA-LGPRFILVNAASAELRVYEDGEEVDRMPVIVGRPSAATPPMAGVIRYARFRPYWN 301 Query: 246 IPRSIIQKDMMAL-LRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPN--FIFR 299 +P +++++ LR+ P +L + + + + E+DW + R Sbjct: 302 LPEGMVREEFAPRVLREGPGFLAAAGFEALSDWSPQARVLDPAEIDWRAVARGERSLRLR 361 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N + + K+ + Y+HDTP+ F R ++GC+R+ + L LL+ Sbjct: 362 QSPGPGNILGNVKLMLPNHLGIYLHDTPDKASFRRSRRTLSAGCIRLADADRLTRRLLEW 421 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 V L VPV+ +Y++A + + D+YG D+ + Sbjct: 422 EEGERPPE-------GLNQRVDLPRGVPVYILYLTAERGEGGEVLRHPDLYGRDSQVIAA 474 >gi|145629244|ref|ZP_01785043.1| hypothetical protein CGSHi22121_10590 [Haemophilus influenzae 22.1-21] gi|144978747|gb|EDJ88470.1| hypothetical protein CGSHi22121_10590 [Haemophilus influenzae 22.1-21] Length = 459 Score = 206 bits (524), Expect = 7e-51, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 6/206 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 234 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 290 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 291 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 350 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 351 NKFPYRVRQAAG-DSALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 409 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKT 377 L LLK+ W+ V+ ++K Sbjct: 410 LASILLKEA-GWTETRKNTVLASKKP 434 >gi|300727069|ref|ZP_07060488.1| putative cell wall degradation protein [Prevotella bryantii B14] gi|299775613|gb|EFI72204.1| putative cell wall degradation protein [Prevotella bryantii B14] Length = 507 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 14/272 (5%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTV 219 L+ N+ + R R L VN+ R + L +YV+VNIPA SL AV+ KV + V Sbjct: 236 LQKPNITAEQR-RLLLVNMERSRWRLSDYPYLHTKYVIVNIPALSLFAVDGDKVQ-QMKV 293 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKG 278 +VG + +TP+LHS R+ NP W+IP SI+ K +A + Y ++ + + G Sbjct: 294 VVGALKTKTPLLHSNFTRMDINPQWLIPMSIL-KSSVARFAGNTSYFNRHHYFIRNRSTG 352 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 K V +V N++ Q+ G N++ F + + Y+HDT +F R Sbjct: 353 KVVPTNQVTSAMILSGNYVVVQEGGPYNSLGRIIFRFNNDYSIYLHDTNSRGVFQKEDRC 412 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRY-----HIEEVVKTRKTTPV---KLATEVPVHF 390 + GCVRV N DL V++L + + ++ V K + K+ ++PV Sbjct: 413 LSHGCVRVENPFDLAVFMLDNNKSVIGRIKYSMTVDSVTGPDKNKLIHSMKVMQDIPVFI 472 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 VY + + + ++ D+YG D + + Sbjct: 473 VYYTLYPNRQGELEQYQDVYGYDQIIYKHLKN 504 >gi|312886219|ref|ZP_07745834.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311301326|gb|EFQ78380.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 542 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 48/297 (16%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-------- 224 +R +++N+ R++ RY+ VNIPA L+ +EN KV V +G Sbjct: 243 LRTIKLNMERLRWQTPA-KDSRYLWVNIPAFKLQWIENKKVVFDMKVCLGEPKPAGYDTM 301 Query: 225 ---------------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + +T IL SRIN I NP W IP SI Q ++ + ++P YL +N Sbjct: 302 LLRYLKTHSIDDKPVNHETTILCSRINTIQLNPNWNIPSSIAQNEIYYAILRNPAYLSNN 361 Query: 270 NIHMIDEKGKEVFVEEVDWNSPE--PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 NI + + + + W + + F+QD ++NA+ K F + Y+HDTP Sbjct: 362 NIRVYYKDKLVTQPDTIRWGRIQRQKIPYKFKQDASELNALGKFKFIFDNEAGIYLHDTP 421 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE--------------EVVK 373 F + R + GCVRV + + L L+ DT +E ++ Sbjct: 422 NKKAFGSSWRAVSHGCVRVEDPLKLSEALVNDTNMVDNIRMEVGLKPVNLKDTTKYNAIQ 481 Query: 374 TR--------KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + K+ + L ++ + Y + W ++ + F D Y +D V + Sbjct: 482 AKRAVKGFELKSKYIGLKPDMQLFIDYYTCWPDENGKLVFYADAYRMDTVLEKAMGK 538 >gi|294674104|ref|YP_003574720.1| lipoprotein [Prevotella ruminicola 23] gi|294472724|gb|ADE82113.1| putative lipoprotein [Prevotella ruminicola 23] Length = 496 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 74/294 (25%), Positives = 121/294 (41%), Gaps = 27/294 (9%) Query: 152 DPSGMVDSSTLEAMNVPV-DLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIPAASLEAVE 209 P + + L M+ + QL VN+ R + +E R +LVNIPA L A++ Sbjct: 195 APDTYIYKALLREMDKTTNADKRHQLAVNMERCRWQIEHPKDVKRQILVNIPAQQLWAID 254 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 V L + G V +TP+LHS I+ + NP WVIP++I++ +++ D Y N Sbjct: 255 VDSV-LDMRICCGAVPTKTPLLHSAISYMQVNPEWVIPQNIVKTEVVHH-AGDSAYFARN 312 Query: 270 NIHMIDE-KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 +ID+ G + V V N+ Q G N++ + + Y+HDT Sbjct: 313 RYSVIDKESGDTLNVASVGANALLSGKLRISQKGGVGNSLGRIVFRSQNDFSIYLHDTNN 372 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY------HIEEVVKTRKT----- 377 F R + GCVRV+ +L +LL D W+ I V + Sbjct: 373 RSAFQRDRRTLSHGCVRVQKPFELASFLLSDVDEWTLESLRISMDIPPVTDRGREWLHKH 432 Query: 378 ----------TPVKLATEVPVHFVYISAWSPKD-SIIQFRDDIYGLDNVHVGII 420 + + VP++ +Y + + I + D+YG D V + Sbjct: 433 ADAPHPYRLISYHAVKPHVPLYILYYTTFPNPKTGAIDYWPDLYGFDKVISKEL 486 >gi|282879885|ref|ZP_06288612.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306279|gb|EFA98312.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] Length = 491 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 119/271 (43%), Gaps = 29/271 (10%) Query: 179 NLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 NL R + L+ + +YV+VNIPA L A+++ +V +R V VG +TP+L SRI Sbjct: 220 NLERTRWRLKDNLFAQDKYVMVNIPAMELLAIDHEQV-MRMRVGVGTNTTKTPLLSSRIM 278 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPEPPN 295 R+ NP WV+P+SII K + D Y +++ + + G V +V Sbjct: 279 RMDVNPQWVMPKSIIDKSVA-RHAGDSAYFENHRYFIRNRETGNRVDPRQVTSEMLRSGQ 337 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + Q+ GK NAM F + Y+HDT +F+ R + GCVRV +L V+ Sbjct: 338 YFVIQEGGKGNAMGRIVFRFKNNFAVYLHDTSSRGVFDQSNRGVSHGCVRVEKPFELAVF 397 Query: 356 LLKDTPTWSRYHIEEVVK------------------------TRKTTPVKLATEVPVHFV 391 LLKD + ++ ++ V++ VP++ Sbjct: 398 LLKDKDEELIEKMRYSMQADIHSHYQKKLTATSNLPNDTLQESKLINSVRVQPAVPLYIT 457 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + + ++ DIYG D V + Sbjct: 458 YYTLYPNEQHGMREYQDIYGFDAVIYKQLKN 488 >gi|87198452|ref|YP_495709.1| hypothetical protein Saro_0427 [Novosphingobium aromaticivorans DSM 12444] gi|87134133|gb|ABD24875.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM 12444] Length = 499 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 105/257 (40%), Gaps = 18/257 (7%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ-T 228 + ++ N+ R + L + +G +Y+L N+P L K+ VIVG+ + T Sbjct: 239 QKQAALIRANMDRWRWL-ARDLGTQYLLANVPEQVLRLTVRNKIISTYKVIVGKPGKTAT 297 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 P L + ++FNP W +P+SI+ + + A L +P+ + + + Sbjct: 298 PQLAETVEGVIFNPTWTVPQSIVVGEGLGARLVNNPRQAEREGYKVTKAGDGTI------ 351 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 Q PG N++ K++ + + ++HDTP LFN R + GCVRV Sbjct: 352 ---------YVVQQPGDNNSLGRMKLDMPNEHAIFLHDTPNRNLFNLPARALSHGCVRVE 402 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 +L + + + ++ T V + PV+ Y + + +++ Sbjct: 403 RATELAMTMAILGAGMTPDDAVAAHTSKVYTKVPMTKTFPVYLTYFTVARDVNGMLRSFP 462 Query: 408 DIYGLDNVHVGIIPLPE 424 DIY D + P Sbjct: 463 DIYNRDAPVLATFAQPR 479 >gi|148554282|ref|YP_001261864.1| hypothetical protein Swit_1361 [Sphingomonas wittichii RW1] gi|148499472|gb|ABQ67726.1| Uncharacterized protein [Sphingomonas wittichii RW1] Length = 418 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 96/247 (38%), Gaps = 31/247 (12%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L+ NL R + + + +G RY+ VNIP L + NG V+VG TP L Sbjct: 192 LRANLERWRWMP-RDLGDRYIYVNIPGYRLSVINNGIEEASYNVVVGAPRTPTPQLELYA 250 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 I+ NP W +P SI++ + I V Sbjct: 251 QSIVANPGWTVPHSIVKAGGT----------RGKGFRWIRNPDGSVSAW----------- 289 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 Q PG NA+ KI+ + + Y+HDTP +F R + GC+RV NI +L Sbjct: 290 ----QAPGPTNALGRIKIDMPNPHAIYLHDTPNRAVFARENRALSHGCIRVENIEELAAM 345 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L + KT +L VPV+ VY +A + D ++ D YG D Sbjct: 346 LQGGDGLD-----AALADPGKTKVFQLERSVPVYLVYFTAQADPDGTVRPLGDPYGRDKA 400 Query: 416 HVGIIPL 422 + + Sbjct: 401 LLAKLGA 407 >gi|326386118|ref|ZP_08207742.1| hypothetical protein Y88_2010 [Novosphingobium nitrogenifigens DSM 19370] gi|326209343|gb|EGD60136.1| hypothetical protein Y88_2010 [Novosphingobium nitrogenifigens DSM 19370] Length = 505 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 18/256 (7%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ-TP 229 +I ++ N+ R + L + +GL+Y+++N+P L N K+ IVGR + TP Sbjct: 246 KQIAMIRANMDRWRWLG-RDLGLQYLIINVPEQELRLTVNNKIIRTYKAIVGRPGKTATP 304 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMAL-LRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 L ++ ++FNP W +P+SI+ + + L P K + Sbjct: 305 QLAEQVKNVVFNPTWTVPQSIVVGEGLGKDLIAHPAKAKRLGYVATQSADGTIT------ 358 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Q PG NA+ K++ + + Y+HDTP LFN R + GC+R Sbjct: 359 ---------VVQQPGNTNALGRVKLDMPNDHAIYIHDTPNRTLFNQPQRALSHGCIRAER 409 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 +L + + + + K T V +A PV+ Y + + +++ D Sbjct: 410 ATELAMTMAILGADLPPQTAVDYSLSGKYTKVPMAKPFPVYITYFTVARDVNGLMRSFPD 469 Query: 409 IYGLDNVHVGIIPLPE 424 +YG D + P Sbjct: 470 LYGRDAKVIASFAQPR 485 >gi|282877810|ref|ZP_06286623.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281300126|gb|EFA92482.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 361 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 32/277 (11%) Query: 174 RQLQVNLMRIKKLLEQKMG--LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R++ NL R + L+ + G +Y L+N+P+ L A ++ K L + +G +D +TP++ Sbjct: 82 RKVICNLERARWRLDDEPGKHEKYALINLPSMHLMARDHDKT-LSMRIGIGALDTKTPLI 140 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-DEKGKEVFVEEVDWNS 290 SRI R+ NP WV+PRSII+K ++ + Y + + GK + V +V + Sbjct: 141 TSRIVRMDVNPQWVMPRSIIEKSVVPQ-AGNKDYFDARRYFIRERKTGKRMDVTQVSADM 199 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + N+ Q+ GK NAM F ++ Y+HDT +F R + GC+R+ Sbjct: 200 LKSGNYFVIQEGGKGNAMGRIVFRFKNKFAIYLHDTSSKGVFEREDRGVSHGCIRLEKPF 259 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTR------------------KT---------TPVKLA 383 D V+LL D + I ++ +T V++ Sbjct: 260 DFAVFLLNDKDEKTIERIRYSMEADIHSTYMDDNPSSDKKPSMETNKLDRAKLIKSVQVK 319 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 VP+ Y + + +++++ D+YG D+V + Sbjct: 320 PTVPLFITYYTLYPNENNVMTEYPDVYGFDSVIYHQL 356 >gi|281422421|ref|ZP_06253420.1| putative cell wall degradation protein [Prevotella copri DSM 18205] gi|281403484|gb|EFB34164.1| putative cell wall degradation protein [Prevotella copri DSM 18205] Length = 451 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 13/271 (4%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTV 219 L+A + +RI+ L N+ R + +YV+VNIP+ L A+++ + L + Sbjct: 182 LKAGGLGKAMRIKIL-CNMERCRWRQYDNPWQHEKYVVVNIPSFHLLAIDH-QDTLSMRI 239 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKG 278 G +TPIL+S I R+ NP W +PRSI+ DM+ + + Y + N ++ + G Sbjct: 240 GCGASKTKTPILNSHIKRMELNPQWFVPRSIVLHDMIHRV-GNHGYFRARNYYVREVATG 298 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 KEV ++ V + + Q GK NA+ F + + ++HDT +F R Sbjct: 299 KEVDLDRVTRSMLISGAYGIAQRGGKGNALGRIIFRFDNNFSVFLHDTNSKGVFGQEDRG 358 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK-------TTPVKLATEVPVHFV 391 + GC+R+ D V+LL D + I + VK+ +VP+ Sbjct: 359 VSHGCIRIEKPYDFAVFLLADKNEKLKEKIYYSMTADSLANKKLVVNNVKVNPQVPLFIT 418 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + I D+YG D + ++ Sbjct: 419 YYTLYPLAGGRIADYSDVYGFDAIIFDMLRK 449 >gi|240142210|ref|YP_002966720.1| hypothetical protein MexAM1_META2p0532 [Methylobacterium extorquens AM1] gi|240012154|gb|ACS43379.1| Hypothetical protein MexAM1_META2p0532 [Methylobacterium extorquens AM1] Length = 290 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 8/227 (3%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 R V+VN+ L A +G+ L S V+VGR TP L + + + NP W +P + Sbjct: 62 PSSGRLVVVNVAGRFLAAYRDGEPELESRVVVGRDGWHTPDLATSVASVTLNPTWTVPET 121 Query: 250 IIQKD-MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I++ + L DP + + N ++ G+ V + V + E Q PG NA+ Sbjct: 122 ILRDEGWRGELASDPGWAERNGFDVLLG-GRRVAADRVG--TAELLKATLVQRPGADNAL 178 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 KI + + Y+HDT EP F++ + GCVRV ++L W+L S + Sbjct: 179 GRMKIAMRNAGSIYLHDTNEPGGFDDPGHSGSHGCVRVELALELATWVL----GASGPEV 234 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++V T VPV F Y +AW + + DIY D Sbjct: 235 ADLVLGGSTIVRTTPEPVPVVFGYFTAWPDAVGRVAYYPDIYRRDAA 281 >gi|163759200|ref|ZP_02166286.1| hypothetical protein HPDFL43_05530 [Hoeflea phototrophica DFL-43] gi|162283604|gb|EDQ33889.1| hypothetical protein HPDFL43_05530 [Hoeflea phototrophica DFL-43] Length = 125 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 63/125 (50%), Positives = 92/125 (73%) Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 +FRQDPGK NAM+STKI F++ + YMHDTP+ +FN ++RFE+SGCVRV+N+ DL+ WL Sbjct: 1 MFRQDPGKGNAMSSTKINFHNPHAVYMHDTPQQGVFNQLMRFESSGCVRVQNVRDLNTWL 60 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 L+DTP W+R IE + + ++T + L+ VPV+F Y +AW+ +D ++QFRDD+Y D V Sbjct: 61 LRDTPGWNRQAIEATIASGESTEILLSEPVPVYFTYFTAWASEDGVVQFRDDVYQRDGVE 120 Query: 417 VGIIP 421 + Sbjct: 121 ELALR 125 >gi|323345681|ref|ZP_08085904.1| cell wall degradation protein [Prevotella oralis ATCC 33269] gi|323093795|gb|EFZ36373.1| cell wall degradation protein [Prevotella oralis ATCC 33269] Length = 507 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 96/444 (21%), Positives = 161/444 (36%), Gaps = 57/444 (12%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 + SL+ S + + + D + + DI + Sbjct: 78 VDCRADSLLAFLKTVSEMGFSPRKFRAQTIEDDLTHLRSLNVDAAKYDINRLLARLEYNL 137 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 KA Y G + +R+ RL + K +D + Sbjct: 138 TKAYLRYTAGQ-------------RFGFMNP--KRIFNRLDVYEPDSLHKSFRGLYDIPM 182 Query: 139 ESAVKLF--------------QMRHGLDPSGMVDSSTLEAMNV-PVDLRIRQLQVNLMRI 183 E A KLF Q H + P + S L + ++ N+ R Sbjct: 183 ELAGKLFFEAALRKIGNDSVAQFLHEVQPQNPLYVSLLNRLKQCSTQTERIKMLCNMERC 242 Query: 184 KKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + L +YVLVNIP+ L AV+ V L + G ++ +TP+L SRI R+ N Sbjct: 243 RWRLYDYPWRHRKYVLVNIPSFHLRAVDQDSV-LEMKIGCGSLETKTPLLTSRIMRMDLN 301 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-KEVFVEEVDWNSPEPPNFIFRQ 300 P WVIPRSI++K + D Y + ++ + K K + V V + ++ Q Sbjct: 302 PQWVIPRSIVRKSIANH-AGDSAYFASHRYYVRERKTIKRIPVSLVSRSMLNSSDYFVIQ 360 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 + G+ NA+ F + + ++H T P +F R + GCVRV +DL V+LLK+ Sbjct: 361 EGGEGNALGRIIFRFNNNFSVFLHYTSAPGVFEQSSRDVSHGCVRVEKPLDLAVFLLKNK 420 Query: 361 PTWSRYHIEEVV-----------KTRKTTP-----------VKLATEVPVHFVYISAWSP 398 I + + +K+ EVP+ Y + + Sbjct: 421 DEKIIEKIRYSMTVDLGNQRDKGQRGVEFRPPVDKSKLIGSLKVEPEVPLFITYYTLYPD 480 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPL 422 + ++ D+YG D V + Sbjct: 481 RYGQLEEFPDVYGYDRVIYNYLGN 504 >gi|148553414|ref|YP_001260996.1| hypothetical protein Swit_0490 [Sphingomonas wittichii RW1] gi|148498604|gb|ABQ66858.1| Uncharacterized protein [Sphingomonas wittichii RW1] Length = 572 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 15/253 (5%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 +++L++NL R + L R+V+V+ +A L E GK V+VG + Sbjct: 331 RKSPRETVQRLRLNLDRARLLPGPWT--RHVVVDAASARLWYYEGGKQRAMMRVVVGAPE 388 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMIDEKGKEVFV 283 +TP+L + + NPYW +P +IQ+ + + P L+ + + + Sbjct: 389 TETPMLAGMVRYAVLNPYWNVPDYLIQRRLAPKIVAGATPASLRMEVLSDWSASPRRLAG 448 Query: 284 EEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 +EVDW + RQ PG+ NAM K F + Y+HDTP+ L + R ++ Sbjct: 449 DEVDWPAVAAGRKLVRMRQLPGRDNAMGRVKFIFPNDLGIYLHDTPDKGLLSKADRHLSN 508 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GC+R+++ L + + V L +PV+ YI+A + Sbjct: 509 GCIRLQDAPGLYRLMF--------GRPLPAASKQPERDVALPAPIPVYLTYITATPTERG 560 Query: 402 IIQFRDDIYGLDN 414 I F D+YG D Sbjct: 561 -IGFLKDVYGRDE 572 >gi|254501948|ref|ZP_05114099.1| hypothetical protein SADFL11_1986 [Labrenzia alexandrii DFL-11] gi|222438019|gb|EEE44698.1| hypothetical protein SADFL11_1986 [Labrenzia alexandrii DFL-11] Length = 522 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 69/371 (18%), Positives = 123/371 (33%), Gaps = 28/371 (7%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +T + + + GG+ L L G V LR R+ G L Sbjct: 163 DDTYRLLKTHLERLYAVKDDGGFTYLDIQEELSPGAQGDQVPDLRRRMFEDG-LVGEGTG 221 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 FD + AV + R+ L S V + A+N+P++ RI Q+ + RI+ + + Sbjct: 222 GELFDKRLAFAVAQSKHRYVLPVSSEVTPRLIRALNIPIERRIEQVSNAMERIRWIPPE- 280 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + +N E+G+V + DR + I + F+P W +P Sbjct: 281 FSRVKLFINKGENQFVFSESGRVVMEGQAFANCPDRNHANTATAIEAVTFHPTWQVPLEF 340 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP-------NFIFRQDPG 303 + +++ L+ DP ++ ++ KG +V + + W P F Sbjct: 341 LGNELLPRLKDDPTEVEGVGYYL-RRKGADVPLSSLPWGQATPRAINRFKDEFNLYLPAS 399 Query: 304 KINAMASTKIEFYSRNNT---YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL-LKD 359 N + S ++ PE +F N N + L L + Sbjct: 400 DENPLGSYAFRLRQEQKLALFHLDSAPEDGVFCNPYLPA--------NAFGIVDGLALLE 451 Query: 360 TPTWSR----YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 R IE + T + + + S W I+F D Y D+ Sbjct: 452 QVIEPRVFPAEGIENRLARGDTITFPARSGLMAVATHQSVWLQYQGAIRFGHDPYLEDSR 511 Query: 416 HVGIIP-LPED 425 + P+ Sbjct: 512 LTAALSGRPKP 522 >gi|218680582|ref|ZP_03528479.1| Peptidoglycan-binding domain 1 protein [Rhizobium etli CIAT 894] Length = 150 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 84/133 (63%), Positives = 103/133 (77%), Gaps = 1/133 (0%) Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 E +DWN E PN +FRQDPGK NAMASTKI FY++N YMHDTP+ LFN ++RFE+S Sbjct: 2 PPETIDWNG-EAPNLMFRQDPGKTNAMASTKINFYNKNGEYMHDTPQQGLFNKLMRFESS 60 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV+N+ DL WLL++TP W+R +E+V+ T TPVKLATEVPV+FVYISAW D Sbjct: 61 GCVRVQNVRDLSNWLLRETPGWNRQQMEQVIATGVNTPVKLATEVPVYFVYISAWGMPDG 120 Query: 402 IIQFRDDIYGLDN 414 I+QFRDDIY +D Sbjct: 121 IVQFRDDIYQMDG 133 >gi|204789654|gb|ACI02035.1| hypothetical protein [uncultured bacterium] Length = 397 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 108/259 (41%), Gaps = 32/259 (12%) Query: 132 VAFDAYVESAVKLF------QMRHGLDPSGMVDSST-LEAMNVPVDLRIR---------- 174 FD ++ A F Q+R +D G + L A V + Sbjct: 139 GLFDVKMQHASDAFFHLALQQLRSKVDVDGEETEKSRLAAFLKDVQPKSPFYYTLQEKLK 198 Query: 175 ----------QLQVNLMRIKKLLEQKMGL--RYVLVNIPAASLEAVENGKVGLRSTVIVG 222 ++ VN+ R + +YVLVNIP+ L A++ + L + G Sbjct: 199 SEGLDRNQRMKILVNMERCRWREADSPARHKKYVLVNIPSFHLYAIDE-QDTLAMKIGCG 257 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEV 281 +TPIL+S I R+ NP W +PRSI+ KDM+ +P Y N ++ D G+EV Sbjct: 258 STKTKTPILNSYIKRMDLNPKWFVPRSIMVKDMVHH-AGNPAYFNARNYYISDRSTGEEV 316 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 +V + Q GK N++ F + + Y+HDT +F+ R + Sbjct: 317 NPAQVTRTMLLSGKYGVVQRGGKGNSLGRIIFRFDNNFSVYLHDTSSQAVFSREDRDVSH 376 Query: 342 GCVRVRNIIDLDVWLLKDT 360 GC+RV +L +LL + Sbjct: 377 GCIRVEKPFELAKFLLHEK 395 >gi|218515096|ref|ZP_03511936.1| hypothetical protein Retl8_16076 [Rhizobium etli 8C-3] Length = 152 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 G V VDW N RQ P NA+ KI F + + YMHDTP F + Sbjct: 3 NGHAVASSSVDWYGST-DNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDM 61 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R + GCVR+ N + +L T + + + + + V++ ++PV+ Y +AW Sbjct: 62 RALSHGCVRLSNPRAMAAAVLGTTVDD----VAKQIASGQNHAVRVPQKIPVYVSYFTAW 117 Query: 397 SPKDSIIQFRDDIYGLDN 414 K+ ++++ DD+YG D Sbjct: 118 PNKEGVVEYFDDVYGRDA 135 >gi|218458505|ref|ZP_03498596.1| hypothetical protein RetlK5_03208 [Rhizobium etli Kim 5] Length = 239 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 19/244 (7%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRL 114 I S P + + +A + G ++ L G+SS + + Sbjct: 1 DTGAYIASRSPDSPQ--FEALKAELAKLRA-ADGGNEGQIVVSLSGLLRPGDSSPEIANI 57 Query: 115 RERLIISGDLDPSKGLSVA---------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + G + + + + V+ FQ GL G++ +T+ AM Sbjct: 58 VKAVQKHGSETLRTDHAATFAAYAGGSDYSPEIVALVEDFQKERGLKADGVIGQATVRAM 117 Query: 166 NV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +I +L+V + + + L + +G RYV++N PA ++GK L V+VG Sbjct: 118 TGGDTNASKIDKLEVAMEQARWLP-EDLGSRYVMINQPAYMAYYHDDGKEQLSMRVVVGG 176 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + QT + I + FNP+W +P+SII +M+ LR DP YL + G V Sbjct: 177 KNNQTYFFNDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-RVNGHAVAS 235 Query: 284 EEVD 287 VD Sbjct: 236 SSVD 239 >gi|257453413|ref|ZP_05618708.1| ErfK/YbiS/YcfS/YnhG [Enhydrobacter aerosaccus SK60] gi|257449165|gb|EEV24113.1| ErfK/YbiS/YcfS/YnhG [Enhydrobacter aerosaccus SK60] Length = 495 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 88/334 (26%), Gaps = 50/334 (14%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKA----------IAFYQDILSRGGWPELPIRPL 102 + + P T+ + A ++ Y +++ W Sbjct: 163 AGASSEEVNNTTTAAPTFDPTTVGNNKTATTPASFSTLNLSDYAQLVNSADW-------- 214 Query: 103 HLGNSSVSVQRLRERLIISGDL--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G + S L+ L D + + + A+K FQ HGL G + + Sbjct: 215 KPGQNVNSATTLK--LQALLDWNHASPGPIDGGWGMNAKKALKNFQAMHGLPQDGRMSAE 272 Query: 161 TLEAMNVPV---DLRIRQLQVNLMRIKKLL-EQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + +N + + + IK G + E Sbjct: 273 VWKLLNEKIPANQPVLVGYTLTQEDIKGPYQPTPSGSEAKSKMKGLYYQDVQEMLAERFH 332 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-- 274 + + +FNP P + ++A + Y + + + Sbjct: 333 MDIRYLKKLNSDKKFTVGETITVFNPG--APLNEKITRLVAKKADNILYAYNGDRLIATY 390 Query: 275 ------------DEKGKEVFVEEVDWNSPEPP----NFIFRQDPGKINAMASTKIEFYSR 318 V + W +F PG + + + Sbjct: 391 PTTVGSSDTPSPTGTFSIVNRVKNPWYRASSGEGKDKKVFMLPPGPKSPVGVVWMGLSKP 450 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +H +P P + R + GCVR+ N L Sbjct: 451 -SYGIHGSPVPEGIS---RQASHGCVRLTNWDVL 480 >gi|262371387|ref|ZP_06064705.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter johnsonii SH046] gi|262313724|gb|EEY94773.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter johnsonii SH046] Length = 345 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 78/271 (28%), Gaps = 32/271 (11%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVD 170 +L+ L S + A+ FQ+ GL G++D++T +N V Sbjct: 71 AKLQVLLSR--HYSSSGAIDGILGLNTVKAISAFQIMKGLSGDGVLDANTWRLLNEVTTQ 128 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQT 228 + + +K Q + + Y + E + + Sbjct: 129 PTFIEYTITTQDLKGPYAQSIPVDYAEQSKMKGLYYTRVTEMLGEKFHMDELFLKKINSG 188 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEE 285 + +I+ + + +Q + + L N + G E Sbjct: 189 ANFNKVGEKIIVANVINVLPNNVQSIIAHKGSKQLYLLNRQNKIIASFPATIGSEDNPSP 248 Query: 286 VDWNS-----------PEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 ++ P NF PG N + + I + +H TP Sbjct: 249 TGTHAIGSIVFNPHYSYNPKNFIQGKNLKPLSLPPGPNNPVGNIWIGLSRP-SFGIHGTP 307 Query: 328 EPILFNNVVRFETSGCVRVRNIID--LDVWL 356 P L + + GC+R+ N L L Sbjct: 308 NPALISKT---ASHGCIRLTNWDANNLAKVL 335 >gi|262372118|ref|ZP_06065397.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter junii SH205] gi|262312143|gb|EEY93228.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter junii SH205] Length = 402 Score = 146 bits (368), Expect = 8e-33, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 72/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI-RQLQVNLMRI 183 + + A+ FQ +GL P+G + T +A+ + + + Sbjct: 139 ASPGAIDGSNGKNTLKAIASFQQMNGLTPTGELTKETWDALVAKQTKPAYVEYTITEADL 198 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K + + Y L E + T +I+ Sbjct: 199 KGPYAESIPSDYALQAKMKGLYYTRVTEMLGEKFHMDENFLKKINPTATFKKAGEKIIVA 258 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V + Sbjct: 259 NVRNDLPEDIHLIVAHKGARQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVAKNP 318 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 319 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPSPSLISKT---AS 374 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 375 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 400 >gi|255318424|ref|ZP_05359657.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter radioresistens SK82] gi|262378654|ref|ZP_06071811.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255304416|gb|EET83600.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter radioresistens SK82] gi|262299939|gb|EEY87851.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 418 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 70/281 (24%), Gaps = 43/281 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD--LRIRQLQVNLMR 182 + A+ FQ +GL P+G++ T +A+ + + Sbjct: 154 ASPGAIDGMSGKNTLKAIASFQQMNGLKPTGVLTKETWDALVAKTAGKPAFVEYTITEDD 213 Query: 183 IKKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +K + Y L + E + +I+ Sbjct: 214 LKGPYASSIPSDYALQAKMKGLYYVRVSEMLGEKFHMDEDFLKKLNPKATFKKAGEKIIV 273 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEV 286 I + + N + K V Sbjct: 274 ANVRNDLPEDIHLIVAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPAGTYKVTGVAPN 333 Query: 287 DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 W S P NF PG + + I + + +H TP P L + Sbjct: 334 PWYSYSPSNFVQGNNKKPLSLPPGPNGPVGNIWIGLS-KKSFGIHGTPNPSLISKT---A 389 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 + GC+R+ N W + + V++ T Sbjct: 390 SHGCIRLTN--------------WDANDLGKKVRSGVTVKF 416 >gi|254489086|ref|ZP_05102290.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] gi|214042094|gb|EEB82733.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] Length = 236 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 83/245 (33%), Gaps = 44/245 (17%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 P + L RI + + +LVNIPA L A + G LRS +IVG + Sbjct: 33 PATTSTDVFKTQLDRIGVSYQVPREGKAILVNIPAFELIAFDRGVPVLRSRIIVGTPWHR 92 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 TP L + ++ + F P W S+I +Y Sbjct: 93 TPRLTTYVSAVRFRPTWRPTPSMIA---------SGEYADR------------------- 124 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 PG+ N + I Y+HDT F+ R + GCVRV+ Sbjct: 125 -----------VWPPGRNNPLGLVAIRLQPGLLVYLHDTNHREKFDQEYRALSHGCVRVQ 173 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 L ++L + + R+T V +PV Y + + I Sbjct: 174 QWDRLVAFVL----GIDLAEVHRLANGRETFDVPAP-PIPVTLGYFTRFPNAAGQIVDHP 228 Query: 408 DIYGL 412 DIY L Sbjct: 229 DIYRL 233 >gi|169632913|ref|YP_001706649.1| hypothetical protein ABSDF1149 [Acinetobacter baumannii SDF] gi|169151705|emb|CAP00498.1| conserved hypothetical protein; putative exported protein [Acinetobacter baumannii] Length = 418 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + + Sbjct: 155 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQNKPAFIEYTITDADL 214 Query: 184 KKLLEQKMGLRY--VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y + E + T +I+ Sbjct: 215 KGPYAQSIPSDYALQVKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKIIVP 274 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 275 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTETPSPTGTYKVVGVARNP 334 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 335 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKTT---S 390 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 391 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 416 >gi|325122922|gb|ADY82445.1| ATP synthase [Acinetobacter calcoaceticus PHEA-2] Length = 412 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ ++ + Sbjct: 149 ASPGAIDGMSGKNTLKAISSFQQMNGLSPTGELTKETWDALVAKQTKPAFIEYTISDADL 208 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K + + Y L E + T +I+ Sbjct: 209 KGPYAESIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKAGEKIIVP 268 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 269 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 328 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 329 WYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 384 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 385 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 410 >gi|323518861|gb|ADX93242.1| hypothetical protein ABTW07_2818 [Acinetobacter baumannii TCDC-AB0715] Length = 415 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 70/281 (24%), Gaps = 42/281 (14%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + + Sbjct: 152 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQNKPAFIEYTITDADL 211 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y L E + T +I+ Sbjct: 212 KGPYAQSIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKIIVP 271 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 272 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 331 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 332 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 387 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 GC+R+ N W + V++ T Sbjct: 388 HGCIRLTN--------------WDANDLGNKVRSGVTVKFS 414 >gi|293609704|ref|ZP_06692006.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828156|gb|EFF86519.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 415 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ ++ + Sbjct: 152 ASPGAIDGMSGKNTLKAISSFQQMNGLSPTGELTKETWDALVAKQTKPAFIEYTISDADL 211 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K + + Y L E + T +I+ Sbjct: 212 KGPYAESIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKAGEKIIVP 271 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 272 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 331 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 332 WYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 387 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 388 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 413 >gi|299769283|ref|YP_003731309.1| hypothetical protein AOLE_05195 [Acinetobacter sp. DR1] gi|298699371|gb|ADI89936.1| hypothetical protein AOLE_05195 [Acinetobacter sp. DR1] Length = 412 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ ++ + Sbjct: 149 ASPGAIDGMSGKNTLKAISSFQQMNGLSPTGDLTKETWDALVAKQTKPAFIEYTISDADL 208 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K + + Y L E + T +I+ Sbjct: 209 KGPYAESIPSDYALQAKMKGLYYTRVTEMLGEKFHIDEAFLKKINPTATFKKAGEKIIVP 268 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 269 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPAGTYKVVGVARNP 328 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 329 WYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 384 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 385 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 410 >gi|184158889|ref|YP_001847228.1| hypothetical protein ACICU_02569 [Acinetobacter baumannii ACICU] gi|213158089|ref|YP_002320140.1| ErfK/YbiS/YcfS/YnhG family [Acinetobacter baumannii AB0057] gi|215482781|ref|YP_002324982.1| hypothetical protein ABBFA_001071 [Acinetobacter baumannii AB307-0294] gi|239502499|ref|ZP_04661809.1| hypothetical protein AbauAB_09314 [Acinetobacter baumannii AB900] gi|301347442|ref|ZP_07228183.1| hypothetical protein AbauAB0_14373 [Acinetobacter baumannii AB056] gi|301596121|ref|ZP_07241129.1| hypothetical protein AbauAB059_09914 [Acinetobacter baumannii AB059] gi|332854140|ref|ZP_08435198.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013150] gi|332867906|ref|ZP_08437908.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013113] gi|332875748|ref|ZP_08443548.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6014059] gi|183210483|gb|ACC57881.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|193077900|gb|ABO12790.2| hypothetical protein A1S_2371 [Acinetobacter baumannii ATCC 17978] gi|213057249|gb|ACJ42151.1| ErfK/YbiS/YcfS/YnhG family [Acinetobacter baumannii AB0057] gi|213988538|gb|ACJ58837.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294] gi|322508867|gb|ADX04321.1| putative exported protein [Acinetobacter baumannii 1656-2] gi|332728196|gb|EGJ59582.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013150] gi|332733679|gb|EGJ64837.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013113] gi|332736072|gb|EGJ67099.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6014059] Length = 415 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + + Sbjct: 152 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQNKPAFIEYTITDADL 211 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y L E + T +I+ Sbjct: 212 KGPYAQSIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKIIVP 271 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 272 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 331 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 332 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 387 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 388 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 413 >gi|260556712|ref|ZP_05828930.1| ErfK/YbiS/YcfS/YnhG family [Acinetobacter baumannii ATCC 19606] gi|260409971|gb|EEX03271.1| ErfK/YbiS/YcfS/YnhG family [Acinetobacter baumannii ATCC 19606] Length = 418 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + + Sbjct: 155 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQNKPAFIEYTITDADL 214 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y L E + T +I+ Sbjct: 215 KGPYAQSIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKIIVP 274 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 275 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 334 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 335 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 390 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 391 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 416 >gi|169795243|ref|YP_001713036.1| hypothetical protein ABAYE1105 [Acinetobacter baumannii AYE] gi|169148170|emb|CAM86033.1| conserved hypothetical protein; putative exported protein [Acinetobacter baumannii AYE] Length = 418 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + + Sbjct: 155 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQNKPAFIEYTITDADL 214 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y L E + T +I+ Sbjct: 215 KGPYAQSIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKIIVP 274 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 275 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 334 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 335 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 390 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 391 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 416 >gi|35210436|dbj|BAC87914.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 415 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + + Sbjct: 152 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQNKPAFIEYTITDADL 211 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y L E + T +I+ Sbjct: 212 KGPYAQSIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKIIVP 271 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 272 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 331 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 332 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 387 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 388 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 413 >gi|301511179|ref|ZP_07236416.1| hypothetical protein AbauAB05_06353 [Acinetobacter baumannii AB058] Length = 415 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + + Sbjct: 152 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQNKPAFIEYTITDADL 211 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y L E + T +I+ Sbjct: 212 KGPYAQSIPSDYALQAKMKGLYYTRVSEMLGEKFHIDETFLKKINPTATFKKVGEKIIVP 271 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 272 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 331 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 332 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 387 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 388 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 413 >gi|262278335|ref|ZP_06056120.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258686|gb|EEY77419.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 416 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 40/280 (14%), Positives = 69/280 (24%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL +G + T +A+ ++ + Sbjct: 153 ASPGAIDGMSGKNTLKAISSFQQMNGLSATGELTKETWDALVAKQTKPAFIEYTISDADL 212 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y L E + T +I+ Sbjct: 213 KGPYAQSIPSDYALQAKMKGLYYTRISEMLGEKFHIDEAFLKKINPTATFKKAGEKIIVP 272 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 273 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPAGTYKVVGVARNP 332 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 333 WYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 388 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 389 HGCIRLTN--------------WDANDLGSKVRSGVTVKF 414 >gi|126642408|ref|YP_001085392.1| hypothetical protein A1S_2371 [Acinetobacter baumannii ATCC 17978] Length = 396 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 70/280 (25%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + + Sbjct: 133 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQNKPAFIEYTITDADL 192 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K Q + Y L E + T +I+ Sbjct: 193 KGPYAQSIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKIIVP 252 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 253 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 312 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 313 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 368 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 369 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 394 >gi|50085556|ref|YP_047066.1| putative signal peptide [Acinetobacter sp. ADP1] gi|49531532|emb|CAG69244.1| conserved hypothetical protein; putative signal peptide [Acinetobacter sp. ADP1] Length = 462 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 67/280 (23%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI-RQLQVNLMRI 183 + A+ FQ +GL P+G + T A+ + + + + Sbjct: 199 ASPGAIDGTSGMNTLKAISSFQQINGLKPTGELTQETWSALVAKQNKPAYVEYTLTEDDL 258 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K + Y + E + +I+ Sbjct: 259 KGPYAPSIPHDYAQQAKMKGLYYVRVTEMLGEKFHMDEDFLKKLNPKASFKKAGEKIIVA 318 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 319 NVRNDLPEDIHLIIAHKGARQLYLFNSRNQMIASFPATIGSSDTPSPTGTYKVVGVARNP 378 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P + + Sbjct: 379 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSAISKT---AS 434 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 435 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 460 >gi|260549740|ref|ZP_05823957.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. RUH2624] gi|260407257|gb|EEX00733.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. RUH2624] Length = 418 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 68/280 (24%), Gaps = 42/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRI 183 + A+ FQ +GL P+G + T +A+ + + Sbjct: 155 ASPGAIDGMSGKNTLKAIASFQQMNGLSPTGELTKETWDALVAKQTKPAFIEYTITDADL 214 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K + + Y L E + +I+ Sbjct: 215 KGPYAESIPSDYALQAKMKGLYYTRVSEMLGEKFHIDEGFLKKLNPKATFKKVGEKIIVP 274 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V V Sbjct: 275 NVRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVARNP 334 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P L + + Sbjct: 335 WYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGLS-KKSFGIHGTPNPSLISKT---AS 390 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + V++ T Sbjct: 391 HGCIRLTN--------------WDANDLGNKVRSGVTVKF 416 >gi|262369492|ref|ZP_06062820.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315560|gb|EEY96599.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 416 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 67/281 (23%), Gaps = 43/281 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR--QLQVNLMR 182 + A+ FQ GL +G + T +A+ + + + Sbjct: 152 ASPGAIDGMSGKNTLKAIASFQQMSGLKATGTLTKETWDALLASQGSKPAFIEYTITEAD 211 Query: 183 IKKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +K + Y L E + I +I+ Sbjct: 212 LKGPYAASIPRDYALQAKMKGLYYTRVTEMLGEKFHMDEDFLQKLNPKAIFKKAGEKIIV 271 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM--------------IDEKGKEVFVEEV 286 I + + N + K V Sbjct: 272 ANIRNEVPEDIHLIVAHKGAKQLYLFNSRNQMIGSFPATIGSSDTPSPTGTYKVTGVAPN 331 Query: 287 DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 W S P NF PG + + I + + +H TP P + Sbjct: 332 PWYSYSPSNFVQGKNLKPLSLPPGPNGPVGNIWIGLS-KKSFGIHGTPNPSAISKT---A 387 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 + GC+R+ N W + + VK+ T Sbjct: 388 SHGCIRLTN--------------WDANDLGKKVKSGVTVKF 414 >gi|226952587|ref|ZP_03823051.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. ATCC 27244] gi|294649883|ref|ZP_06727283.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|226836667|gb|EEH69050.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. ATCC 27244] gi|292824257|gb|EFF83060.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 412 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 35/250 (14%), Positives = 65/250 (26%), Gaps = 28/250 (11%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI-RQLQVNLMRI 183 + + A+ FQ +GL P+G + T +A+ + + + Sbjct: 149 ASPGAIDGSNGQNTLKAIASFQQMNGLTPTGQLTKETWDALVAKQTKPAYVEYTITEADL 208 Query: 184 KKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 K + + Y L E R + +I+ Sbjct: 209 KGPYAESIPTDYALQAKMKGLYYTRVTEMLGEKFHMDERFLRQLNPRANFNKVGEKIVVA 268 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVD 287 I + + N + K V + Sbjct: 269 NVRNDLPEDIHLIVAHKGAKQLYLFNSRNQMIASFPATIGSTSTPSPTGTYKVTGVAKNP 328 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I + + +H TP P + + + Sbjct: 329 WYSYSPSNFVQGKNLKPLSLPPGPNGPVGNIWIGLS-KKSFGIHGTPNPSMISKN---AS 384 Query: 341 SGCVRVRNII 350 GC+R+ N Sbjct: 385 HGCIRLTNWD 394 >gi|262375967|ref|ZP_06069198.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] gi|262309061|gb|EEY90193.1| conserved hypothetical protein [Acinetobacter lwoffii SH145] Length = 410 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 34/281 (12%), Positives = 68/281 (24%), Gaps = 43/281 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--NVPVDLRIRQLQVNLMR 182 + A+ FQ +G+ P+G++ T + + + + Sbjct: 146 ASPGAIDGTSGKNTLKAIASFQQMNGIKPTGVLTQETWDKLVARQGSKPTFVEYTITEKD 205 Query: 183 IKKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + + Y L E + + +++ Sbjct: 206 LAGPFAKSIPSDYALQAKMKGLYYTSVSEMLSEKFHMDENFLKKLNPNANFNKVGEKLLV 265 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEV 286 + I + + N + K V Sbjct: 266 SNVRNDLPEGIHLIVAHKGAKQLYLFNSKNQMIASFPATIGSADTPSPTGTYKVTGVAPN 325 Query: 287 DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 W S P NF PG + + I + + +H TP P + Sbjct: 326 PWYSYSPSNFVQGKNLKPLSLPPGPNGPVGNIWIGLS-KKSFGIHGTPNPSSISKT---A 381 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 + GC+R+ N W + VK+ T Sbjct: 382 SHGCIRLTN--------------WDANDLGRKVKSGVTVRF 408 >gi|148652734|ref|YP_001279827.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] gi|148571818|gb|ABQ93877.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] Length = 432 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 66/250 (26%), Gaps = 28/250 (11%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV---PVDLRIRQLQVNLM 181 + + A+ FQ GL +G +D++T + P + Q + Sbjct: 174 ASPGPIDGGWGMNSTKALANFQTMRGLPSTGKMDTATWNELTKKINPKQPVLVQYTLTKE 233 Query: 182 RIKK-LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 L G + E V + + Sbjct: 234 DANTPLAPTPSGSEAKSKMKGLYYQDIKEMLGERFHMDVRYLEKLNKGKRFVEGETITVI 293 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI--------------DEKGKEVFVEEV 286 N P ++A Y + N + K V ++ Sbjct: 294 NVG--DPLKAKINRVIANKADKTLYAYNGNQLVATYPTTVGSTSTPSPTGTFKIVNKVKM 351 Query: 287 DWNSPEPPNFIFRQ----DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 W N +Q PG N + + + +H +P P + R ++G Sbjct: 352 PWYKSTVKNGDKKQVFMLPPGPNNPVGVVWMGLSKP-SYGIHGSPVPEGIS---RQASAG 407 Query: 343 CVRVRNIIDL 352 CVR+ N L Sbjct: 408 CVRLTNWDVL 417 >gi|116621255|ref|YP_823411.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Solibacter usitatus Ellin6076] gi|116224417|gb|ABJ83126.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Solibacter usitatus Ellin6076] Length = 317 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 86/290 (29%), Gaps = 33/290 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G V R + L + + +F ++ AV FQ + SG V Sbjct: 30 AQGDLAQGAKGAGVVRAQILLARAHF--SCGEIDGSFGTNLQKAVMAFQNDRKIPASGTV 87 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVGLR 216 D++T A+N + ++ + +PA E Sbjct: 88 DAATWGALNSDAAPALIPYTISDQDVAGPFVPVPADMKQQAKMPALGYASPQELLGEKFH 147 Query: 217 STVIVGRVDRQTPILHSRINRI-MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 S+ + + L ++ + N + P + + Y + + Sbjct: 148 SSPQLLQALNPGADLAKPGQQLNVPNVVVMTPPQAARVVVSKSESSVRAYDEGGKLLAFY 207 Query: 276 EK--GKEVFVEEVD--------------------WNSPEPPNFIFRQDPGKINAMASTKI 313 G E + W++ + + PG N + I Sbjct: 208 SATIGSEHDPLPIGEWKIKGVGRNPKFHYNAELFWDAKDRND-RETLPPGPNNPVGLVWI 266 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + + +H TPEP + + GC+R+ N ++L + TP Sbjct: 267 DLSKEH-YGIHGTPEPGKIGHTE---SHGCIRLTNWDALELAAMVRPGTP 312 >gi|116251611|ref|YP_767449.1| ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256259|emb|CAK07340.1| putative exported ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 337 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 80/288 (27%), Gaps = 33/288 (11%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G+ ++ RL+ L +G + V+ AV F+ + L G Sbjct: 39 SIGTEKPAPGDPDPAIVRLQVLLDRAG--SSPGVIDGLSGENVDKAVAGFEAMNNLPVDG 96 Query: 156 MVDSSTLEAMNVPV---DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENG 211 +D + + V+ L+++ + + E Sbjct: 97 RLDPEVASRLEGNAPIVAPIVESYVVSAEDAAGLVDKIPEDYGEKAKMQSLGYTSVAEKL 156 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + + + NP + + + Q Y D ++ Sbjct: 157 SERFHMGIDLVHALNPASQFAPGDTVWVVNPGPPRGGKVKRIEADRKTGQVLAYAADGSL 216 Query: 272 HMIDEK--GKEVFVEEVDWNSPEP----------PNFIFRQ---------DPGKINAMAS 310 + G E + + P F+Q G + + Sbjct: 217 LAVYPATIGSEDNPAPSGKHKVKGVARMPVYRYDPKRNFKQGKNDKVLTIPKGPNGPVGT 276 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 I+ +H TPEP L + V + GCVR+ N +L + Sbjct: 277 VWIDLTEP-TYGIHGTPEPKLIDKVG---SHGCVRLTNWDAEELAAMV 320 >gi|254522184|ref|ZP_05134239.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas sp. SKA14] gi|219719775|gb|EED38300.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas sp. SKA14] Length = 319 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 76/273 (27%), Gaps = 34/273 (12%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYV----ESAVKLFQMRHGLDPSGMVDSSTLE 163 + R L LD + D V AV FQ HGL +G +D +T + Sbjct: 37 GPDIAA-RSPLHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLTVTGELDEATWK 95 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A+ + + + + + G E+ ++ + Sbjct: 96 ALQADANAPLASYTLTAEDVAGPFQPVPKGPAAQAKLKALGYGSVEESLGERFHASPELL 155 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGK 279 +V L NRI P K ++ Q L + G Sbjct: 156 KVLNPGVDLGKAGNRIQVPNIAPAPLPKAAKVVVDKSDSTLQLLDAQGKVIAQVPVSSGS 215 Query: 280 EVFVEEVD--------------------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + + W++ + PG N + I+ + Sbjct: 216 QHDPLPIGEWKILGVYRDPPFHYNPKLFWDARKGEK-KATLPPGPNNPVGRVWIDLSKPH 274 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +H TPEP + GCVR+ N L Sbjct: 275 -YGLHGTPEPGHVGKTE---SHGCVRMTNWDAL 303 >gi|332978420|gb|EGK15137.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. 1501(2011)] Length = 435 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 66/250 (26%), Gaps = 28/250 (11%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV---PVDLRIRQLQVNLM 181 + + A+ FQ GL +G +D++T A+ P + Q + Sbjct: 177 ASPGPIDGGWGMNSTKALSNFQTMKGLPSTGKMDTATWNALTKNIDPNQPVLVQYTLTKE 236 Query: 182 RIKKLLEQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + G E V + + Sbjct: 237 DVNTNFQDTPSGSEAKSKMKGLYYQNIKEMLGERFHMDVRYLEKLNKGKSFTEGETLTVI 296 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI--------------DEKGKEVFVEEV 286 N P ++A Y + + + K V ++ Sbjct: 297 NVG--EPLKEKINRVIADKATKTLYAYNGDKLVATYPTTVGSTSTPSPSGTFKIVNKVKM 354 Query: 287 DWNSPEPPNFIFRQ----DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 W N Q PG N + + + +H +P P + R ++G Sbjct: 355 PWYKSTVKNGDKSQVFMLPPGPNNPVGVVWMGLSKP-SYGIHGSPVPEGIS---RQASAG 410 Query: 343 CVRVRNIIDL 352 CVR+ N L Sbjct: 411 CVRLTNWDVL 420 >gi|150377011|ref|YP_001313607.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150031558|gb|ABR63674.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 327 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 74/273 (27%), Gaps = 31/273 (11%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ L+ L +G + + V A+ F+ L G +D + ++ Sbjct: 52 DPAIVHLQVLLDRAG--SSPGVIDGYYGENVTKAIAGFEAMQKLPTDGKLDPEVVSRLSE 109 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVGRVDR 226 I+ + K L+ + E V + + Sbjct: 110 D-KPAIQSYVITEEDTKDLVSDIPNDYSEQAEMDNLGYKSVEERLSERFHMDVDLLKTLN 168 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--EKGKEVFVE 284 + + P + + ++ Q + +D + G E Sbjct: 169 PNSSFDTGETVWVAMPGAPKEGVVKRIEVRKRSGQVLAFAEDGAPIAVYPASIGSEASPS 228 Query: 285 EVDWNSPEP-------------------PNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 + + N G N + + I+ +H Sbjct: 229 PSGRHKVKGVARMPPYVYDPEVNFQQADNNKPLTLPKGPNNPVGTVWIDLTKP-TYGIHG 287 Query: 326 TPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 TPEP L + ++ GCVR+ N +L + Sbjct: 288 TPEPSLIDK---AQSHGCVRLTNWDAEELAEMV 317 >gi|312890410|ref|ZP_07749947.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311297180|gb|EFQ74312.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 436 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 31/206 (15%) Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T A + + R + VNL R++ + +YVLVNIP L ++NGK L V Sbjct: 234 GTTAAPGMSAEETQRAILVNLERLRWK-NKPSESKYVLVNIPDYQLNFMDNGKSILNMKV 292 Query: 220 IVGR----------------------VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VG R+TP L+S I NP W IP+SI K+++ Sbjct: 293 CVGEGRNKDHSHNLVEYDDSYQIDRPFSRETPQLNSMIYVAEVNPVWNIPQSIASKEIIV 352 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN---FIFRQDPGKINAMASTKIE 314 +DP YL + NI + + E + W + + F+Q PG N++ K Sbjct: 353 EAAKDPYYLSNKNIVVYKGGQEVEDPETIKWATLSENEKASYSFKQKPGDDNSLGKIKFL 412 Query: 315 FYSRNNTYMHDT---PEPILFNNVVR 337 F + N Y+ T P L N R Sbjct: 413 FKNSTNVYL--TILRPSRHLLNRCGR 436 >gi|13488433|ref|NP_109440.1| hypothetical protein mll9583 [Mesorhizobium loti MAFF303099] gi|14028187|dbj|BAB54779.1| mll9583 [Mesorhizobium loti MAFF303099] Length = 376 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 78/278 (28%), Gaps = 31/278 (11%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S S+ RL+ L +G + + A+ F+M GL G + + A++ Sbjct: 102 SPSIVRLQVLLDRAG--ASPGVIDGLDGGNLRHAIAAFEMMRGLPVDGRIGPQVIAAIDA 159 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PAASLEAVENGKVGLRSTVIVGRVDR 226 I V + ++ + + E + Sbjct: 160 D-KQVIGSYVVTADDLSTVVGAIPKDYARMAEMKYLGYARPSEAVAERFHMDEDFLKALN 218 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI--DEKGKEVFVE 284 + + ++ ++ Q Y +D ++ G E Sbjct: 219 PGATFAEGETISVADLSSGKRGKAVRVEVDKAEGQVRAYAEDGSLLAAFPATIGSEENPS 278 Query: 285 EVDWNSPEP----------PNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHD 325 ++ P F+Q PG + + I+ + +H Sbjct: 279 PSGMHTVRAVVSNPSYTYNPKLNFKQGNNDKVLTLPPGPNGPVGTVWIDLSEP-SFGIHG 337 Query: 326 TPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 TPEP + + GCVR+ N +L L P Sbjct: 338 TPEPARIDKTG---SHGCVRLTNWDAGELGKLLSPGVP 372 >gi|16264761|ref|NP_437553.1| hypothetical protein SM_b21573 [Sinorhizobium meliloti 1021] gi|15140899|emb|CAC49413.1| hypothetical exported protein [Sinorhizobium meliloti 1021] Length = 327 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 80/284 (28%), Gaps = 34/284 (11%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 ++ L+ L +G + + V AV ++ L G +D + Sbjct: 54 AIVHLQILLDRAG--SSPGVIDGYYGENVTKAVAGYEAMQRLPVDGKLDPEVFSRLPQD- 110 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP-AASLEAVENGKVGLRSTVIVGRVDRQT 228 I+ + K L+++ + E + + + Sbjct: 111 QPVIQSYAITEEDAKDLVDEIPDDYSKQAKMDHLGYTSVEERLSERFHMDLDLLKALNPG 170 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEV 286 + P + + ++ Q + +D + G E Sbjct: 171 SSFAVGETVWVAKPGAAKEGEVKRIEVRKRAGQVLAFAEDGSPLAAYPASIGSEGSPSPT 230 Query: 287 DWNSPEP----------PNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTP 327 + + P+ F+Q G N + + I+ +H TP Sbjct: 231 GTHKVKGVARMPPYEYDPDVNFKQGDNDEALTLPKGPNNPVGTVWIDLTEP-TYGIHGTP 289 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIE 369 EP L + ++ GCVR+ N +L + P I+ Sbjct: 290 EPSLIDK---AQSHGCVRLTNWDAEELAAMV---KPGVVAEFID 327 >gi|307313300|ref|ZP_07592924.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307320767|ref|ZP_07600178.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306893585|gb|EFN24360.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306899313|gb|EFN29948.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 327 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 80/284 (28%), Gaps = 34/284 (11%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 ++ L+ L +G + + V AV ++ L G +D + Sbjct: 54 AIVHLQILLDRAG--SSPGVIDGYYGENVTKAVAGYEAMQRLPVDGKLDPEVFSRLPQD- 110 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP-AASLEAVENGKVGLRSTVIVGRVDRQT 228 I+ + K L+++ + E + + + Sbjct: 111 QPVIQSYAITEEDAKDLVDEIPDDYSKQAKMDHLGYTSVEERLSERFHMDLDLLKALNPG 170 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEV 286 + P + + ++ Q + +D + G E Sbjct: 171 SSFAVGETVWVAKPGAAKEGEVKRIEVRKRAGQVLAFAEDGSPLAAYPASIGSEGSPSPT 230 Query: 287 DWNSPEP----------PNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTP 327 + + P+ F+Q G N + + I+ +H TP Sbjct: 231 GTHKVKGVARMPPYEYDPDVNFKQGDNDEALTLPKGPNNPVGTVWIDLTEP-TYGIHGTP 289 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIE 369 EP L + ++ GCVR+ N +L + P I+ Sbjct: 290 EPSLIDK---AQSHGCVRLTNWDAEELAAMV---KPGVVAEFID 327 >gi|289808938|ref|ZP_06539567.1| hypothetical protein Salmonellaentericaenterica_32767 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 108 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 MHDTP LF R +SGCVRV +L LL+D W+ I +K T V + Sbjct: 1 MHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNI 59 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +PV+ Y++A+ D +Q+R DIY D Sbjct: 60 RQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 90 >gi|86357371|ref|YP_469263.1| hypothetical protein RHE_CH01741 [Rhizobium etli CFN 42] gi|86281473|gb|ABC90536.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 330 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 85/305 (27%), Gaps = 34/305 (11%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ L + ++ RL+ L +G + V+ AV F+ + L G Sbjct: 36 DIGKGKLQPADPDPAIVRLQVLLDRAG--SSPGVIDGLSGENVDKAVAGFEAMNKLPVDG 93 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVG 214 D + I V+ L+++ + + E Sbjct: 94 RPDPDVASRLEDN-SPIIESYVVSPEDATGLVDRIPEDYGEKAKMQSLGYTSVAEKLSER 152 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 + + + NP + + Q Y +D ++ + Sbjct: 153 FHMDLDLLNALNPGSHFAPGDKVWVVNPGPPRQGKVKSIEADKKTGQVLAYGEDASLLAV 212 Query: 275 DEK--GKEVFVEEVDWNSPEP----------PNFIFRQ---------DPGKINAMASTKI 313 G E + + P F+Q G + + I Sbjct: 213 YPATIGSEDNPAPSGKHKVKGVSRMPVYRYDPKRNFKQGKNNKVLTIPKGPNGPVGTVWI 272 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEV 371 + +H TPEP L + V + GCVR+ N +L + P + Sbjct: 273 DLTEP-TYGIHGTPEPKLIDKVG---SHGCVRLTNWDAEELAGMV---KPGVPVEFVNRS 325 Query: 372 VKTRK 376 + RK Sbjct: 326 LADRK 330 >gi|241204240|ref|YP_002975336.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858130|gb|ACS55797.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 334 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 78/285 (27%), Gaps = 33/285 (11%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + ++ RL+ L +G + V+ AV F+ + L G +D Sbjct: 39 AGKPKPADPDPAIVRLQVLLDRAG--SSPGVIDGLSGENVDKAVAGFEAMNNLPVDGRLD 96 Query: 159 SSTLEAMNVPV---DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVG 214 + + V+ ++++ + + E Sbjct: 97 PEVASRLEGNAAIVAPIVESYVVSAEDAAGVVDKIPEDYGEKAKMQSLGYTSVAEKLSER 156 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 + + + +P + + + Q Y D ++ + Sbjct: 157 FHMGIDLVHALNLASQFAPGDTVWVVDPGSPRQGKVKKIEADRKTGQVLAYAADGSLLAV 216 Query: 275 DEK--GKEVFVEEVDWNSPEP----------PNFIFRQ---------DPGKINAMASTKI 313 G E + + P F+Q G + + I Sbjct: 217 YPATIGSEDNPAPSGKHKVKGVARMPVYRYDPKRNFKQGKNDKVLTIPKGPNGPVGTVWI 276 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + +H TPEP L + V + GCVR+ N +L + Sbjct: 277 DLTEP-TYGIHGTPEPKLIDKVG---SHGCVRLTNWDAEELAAMV 317 >gi|327193093|gb|EGE60003.1| hypothetical protein RHECNPAF_174007 [Rhizobium etli CNPAF512] Length = 371 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 83/295 (28%), Gaps = 34/295 (11%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + ++ RL+ L +G + V+ AV +Q + L G D + + Sbjct: 87 DPDPAIVRLQVLLDRAG--SSPGVIDGLSGENVDKAVAGYQAMNKLPVDGRPDPDLVSRL 144 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PAASLEAVENGKVGLRSTVIVGRV 224 + V+ L+++ + E + + + Sbjct: 145 E-DHSPIVATYVVSPEDATGLVDRIPEDYGEKAKMQMLGYTSVAEKLSERFHMDLDLLKA 203 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVF 282 + + +P + + + Q Y +D ++ + G + Sbjct: 204 LNPASQFAAGDTVWVVDPGPPREGKVKRIEADRKTGQVLAYGEDGSVLAVYPATIGSKDN 263 Query: 283 VEEVDWNSPEP----------PNFIFRQ---------DPGKINAMASTKIEFYSRNNTYM 323 + + P F+Q G + + I+ + Sbjct: 264 PSPSGKHKVKGVARMPVYRYDPRLNFKQGKNDKVLTIPKGPNGPVGTVWIDLTEP-TYGI 322 Query: 324 HDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 H TPEP L + V + GCVR+ N +L + P + K Sbjct: 323 HGTPEPKLIDKVG---SHGCVRLTNWDAEELAGMV---KPGVPVEFVNRSPAAPK 371 >gi|304392968|ref|ZP_07374899.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] gi|303294966|gb|EFL89335.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] Length = 319 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 35/304 (11%), Positives = 78/304 (25%), Gaps = 45/304 (14%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +PL + ++ RL+ L +G + +A+ ++ G++ G +D Sbjct: 31 SKPLESKDK-AAMIRLQTLLDRAG--SSPGVIDGLMGKSTSAAIAAYEAMQGMNVDGEMD 87 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLR 216 +AM+ D + + +Y + E Sbjct: 88 DEVWQAMSKDADATAQTYTITEDDAAMEPTPPTPEKYTEMAKMDKLGYHTHSEMLAEKFH 147 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID- 275 + + I+ + I K + + + L + Sbjct: 148 MDEDLLKELNPDADFTKAGTEIIVTVPGKVLDVTIAKIEVLKSSGELRALNAEGKLVFAA 207 Query: 276 ----EKGKEVFVE-----------------EVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + ++ + G + + I+ Sbjct: 208 PASVGSDETPSPSGSMKVRAVAANPTYSYDPKNFGDDAGTDEKLTIPAGANGPVGTMWID 267 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 +H TP P N R + GCVR+ N W + +++ Sbjct: 268 LDKP-TYGIHGTPYPADIN---RTASHGCVRLTN--------------WDATRLAKMLTA 309 Query: 375 RKTT 378 +TT Sbjct: 310 GETT 313 >gi|332968505|gb|EGK07568.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. 1501(2011)] Length = 369 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 84/243 (34%), Gaps = 33/243 (13%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL---MRIK 184 + F V A++ FQ ++GL +G +DS T + + + + VN Sbjct: 127 GAVDGRFGENVVKALQAFQEKNGLQVTGDIDSETWNKLTEDSTINEQPVLVNYTLTDEDV 186 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ G ++ V A + + + +++NP Sbjct: 187 TLISNPKGQQFESVLEAVAE---------KFHMSQGLLLRLNADTSFEAGNTIVVYNP-- 235 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMI---------------DEKGKEVFVEEVDWN 289 P +I ++A+ ++ Y D N ++ + + K + + Sbjct: 236 YQPNAIPVHRVVAVKSKNLLYAYDENDTLVASYPTTMGSVYKPSPNGEYKVLSRIKDPTY 295 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + + N PG N + I ++ + +H +P P + +SGCVR+ N Sbjct: 296 NKDFKNPKTALPPGPNNPVGRVWIGI-NKRSYGIHGSPNPERISRQN---SSGCVRLTNW 351 Query: 350 IDL 352 L Sbjct: 352 DAL 354 >gi|46204583|ref|ZP_00209472.1| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 259 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 +P + +T +T +A YQ GGW LP G+S ++ LR L ++GDL Sbjct: 127 LPTFTAQTFVETMRAAERYQVYAEAGGWKTLPADFAPKPGDSHPAIPSLRHHLTLTGDLP 186 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S +D + +AVK FQ RHGL +G+ TL A+NVP ++R RQL+ + R+ Sbjct: 187 ADAPPSDRYDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPAEVRQRQLRASAQRLMG 246 Query: 186 LLEQKMGLRYVLVN 199 G RYV VN Sbjct: 247 -SSFAFGERYVTVN 259 >gi|93006394|ref|YP_580831.1| ErfK/YbiS/YcfS/YnhG [Psychrobacter cryohalolentis K5] gi|92394072|gb|ABE75347.1| ErfK/YbiS/YcfS/YnhG [Psychrobacter cryohalolentis K5] Length = 391 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 25/246 (10%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--- 184 + + A++ FQM +GL + ++ T +A+ L + + VN Sbjct: 137 GAVDGYWGKNSRKAMQAFQMANGLAVTDTLNIETWQALTKNDKLMAQPVLVNYQLTDADI 196 Query: 185 --KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 K G +E + + ++N Sbjct: 197 NIKTTVIPAGAEAKSKLEGMYYETVIEGLAEKFHISESYLKALNPNAKFALGETITVYN- 255 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPE----PPN 295 + + + + D I + G ++ PN Sbjct: 256 PGNPNIKPVSRVVADKATETLYAYDDKGILVASYPTTVGSTATPSPTGTHTVAVKVHEPN 315 Query: 296 FIF--------RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + + PG N + S I + +H +P+P + R ++GC+R+ Sbjct: 316 YTYTAENGSKSILPPGPNNPVGSVWIGLSKP-SYGIHGSPDPARIS---RQASAGCIRLT 371 Query: 348 NIIDLD 353 N L Sbjct: 372 NWDALA 377 >gi|227818557|ref|YP_002822528.1| exported ErfK/YbiS/YhnG family protein [Sinorhizobium fredii NGR234] gi|227337556|gb|ACP21775.1| putative exported ErfK/YbiS/YhnG family protein [Sinorhizobium fredii NGR234] Length = 327 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 78/272 (28%), Gaps = 31/272 (11%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ RL+ L +G + + V AV F+ GL G D E ++ Sbjct: 53 PAIVRLQVLLDRAG--ASPGVIDGYYGENVTKAVAGFEAMQGLPVDGKPDPEVTERLSGG 110 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP-AASLEAVENGKVGLRSTVIVGRVDRQ 227 I ++ K L++ + E + + + Sbjct: 111 -KPVIEPYVISEDDAKGLVDSIPEDYAEQAEMEHLGYTSVEEKLSERFHMDIDLLKALNP 169 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEE 285 + P ++ + + Q + +D ++ + G E Sbjct: 170 GSAFAVGATVSVAMPGTAKEGTVKRIEARRRAGQVLAFAEDGSVLAVYPATIGSEESPSP 229 Query: 286 VDWNSPEP----------PNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDT 326 + + P F+Q G + S I+ +H T Sbjct: 230 SGTHKVKGVARMPVYVYNPKVNFQQGDNSEVLELPKGPNGPVGSVWIDLTEP-TYGIHGT 288 Query: 327 PEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 PEP L + + GC+R+ N +L + Sbjct: 289 PEPSLVDK---AGSHGCIRLTNWDAEELAAMV 317 >gi|148653993|ref|YP_001281086.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] gi|148573077|gb|ABQ95136.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] Length = 399 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 33/243 (13%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM---RIK 184 + F V A+K+FQ + + P+G +D T + L + + VN Sbjct: 157 GAVDGRFGENVIKALKVFQEKQAMKPTGQLDPETWAKLTEDPALMSQPVLVNYTLTPEDV 216 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L++ G ++ V A + + L + +++NP Sbjct: 217 TLIKNPKGQQFTTVTEAVAE---------KFHMSQGLLWRLNPDTPLEAGNTIVVYNP-- 265 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMI---------------DEKGKEVFVEEVDWN 289 P ++A+ ++ Y ++ ++ D K + + Sbjct: 266 YQPNEQEVHRVVAVKAKNLLYAYNDKDELVASYPTTMGSVYKPSPDGDYKVLSRIKDPSY 325 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + + N PG N + I ++ + +H +P P + +SGCVR+ N Sbjct: 326 NKDFKNPNTVLPPGPNNPVGRVWIGI-NKRSYGIHGSPNPEKISRQN---SSGCVRLTNW 381 Query: 350 IDL 352 L Sbjct: 382 DAL 384 >gi|190575450|ref|YP_001973295.1| putative peptidoglycan-binding ErfK/YbiS/YcfS/YnhG protein [Stenotrophomonas maltophilia K279a] gi|190013372|emb|CAQ47006.1| putative peptidoglycan binding ErfK/YbiS/YcfS/YnhG protein [Stenotrophomonas maltophilia K279a] Length = 320 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 75/273 (27%), Gaps = 34/273 (12%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYV----ESAVKLFQMRHGLDPSGMVDSSTLE 163 R L LD + D V AV FQ HGL +G +D +T + Sbjct: 38 GPDTAA-RSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLTVTGELDDATWQ 96 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVG 222 A+ + + + + + + VE ++ + Sbjct: 97 ALQADKVTPLASYTLTSEDVAGPFQAVPKGPAAQAKLKSLGFNNVEESLGERFHASPELL 156 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGK 279 ++ L NRI P K ++ Q L + G Sbjct: 157 KLLNPGVDLSKAGNRIQVPNIAPSPLPKAAKVVVDKSDSSLQLLDAQGKVIAQVPVSSGS 216 Query: 280 EVFVEEVD--------------------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + + W++ + PG N + I+ + Sbjct: 217 QHDPLPIGEWKILGVYRDPPFHYNPKLFWDARKGEK-KATLPPGPNNPVGRVWIDLSKPH 275 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +H TPEP + GCVR+ N L Sbjct: 276 -YGLHGTPEPGHVGKTE---SHGCVRMTNWDAL 304 >gi|296284202|ref|ZP_06862200.1| ErfK/YbiS/YcfS/YnhG family protein [Citromicrobium bathyomarinum JL354] Length = 359 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 78/283 (27%), Gaps = 31/283 (10%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+ + + ++ L + + +SA++ F+ HG+ G VD L+ Sbjct: 79 LGDRTPEMIAVQVMLDHT--AHAPGVIDGFGGGNTDSAIRYFREAHGMSADGGVDDKLLQ 136 Query: 164 A-MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PAASLEAVENGKVGLRSTVIV 221 A + R V K ++ + + +E Sbjct: 137 ALFDETSGDIFRTYTVTEKDAKGPFKKLPEDFADMAEMDALGYETPLEMLAERFHMDAEF 196 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIP-RSIIQKDMMALLRQDPQYLKDNNIHMID---EK 277 + +++ + I K + D + Sbjct: 197 LQALNPDADFGKAGTKLVIVSHGNEKVAGDIAKLEVRKGEGRLVAFDDAGEIVASFPASI 256 Query: 278 GKEVFVEEVDWNSPE-----------------PPNFIFRQDPGKINAMASTKIEFYSRNN 320 G F S P+ F PG N + T I+ ++ Sbjct: 257 GSVEFPSPSGSMSVNTVAPEPNYTFDGDKQEWGPDGTFILPPGPNNPVGGTWIDLT-KDG 315 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTP 361 +H TP+P + GCVR+ N L + K T Sbjct: 316 YGIHGTPDPDFIAKGK---SHGCVRLTNWNAAALAKVIEKGTK 355 >gi|84622730|ref|YP_450102.1| hypothetical protein XOO_1073 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366670|dbj|BAE67828.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 330 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 64/249 (25%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 68 SPGQIDGERGSNQKRAVSGFQAAHKIKVTGELDDATWQALQADTTPALVQYTLTDADVAG 127 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 128 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIQVPNID 187 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 P + K ++ + + G + + Sbjct: 188 GAPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKILGVARNPVF 247 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + PG N + I+ + +H TPEP + Sbjct: 248 KYNPTLFWDAKKGEQKATLPPGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 303 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 304 GCVRLTNWD 312 >gi|58425396|gb|AAW74433.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 365 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 64/249 (25%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 103 SPGQIDGERGSNQKRAVSGFQAAHKIKVTGELDDATWQALQADTTPALVQYTLTDADVAG 162 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 163 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIQVPNID 222 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 P + K ++ + + G + + Sbjct: 223 GAPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIRRWKILGVARNPVF 282 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + PG N + I+ + +H TPEP + Sbjct: 283 KYNPTLFWDAKKGEQKATLPPGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 338 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 339 GCVRLTNWD 347 >gi|188578233|ref|YP_001915162.1| ErfK/YbiS/YcfS/YnhG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522685|gb|ACD60630.1| ErfK/YbiS/YcfS/YnhG [Xanthomonas oryzae pv. oryzae PXO99A] Length = 271 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 64/249 (25%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 9 SPGQIDGERGSNQKRAVSGFQAAHKIKVTGELDDATWQALQADTTPALVQYTLTDADVAG 68 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 69 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIQVPNID 128 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 P + K ++ + + G + + Sbjct: 129 GAPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKILGVARNPVF 188 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + PG N + I+ + +H TPEP + Sbjct: 189 KYNPTLFWDAKKGEQKATLPPGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 244 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 245 GCVRLTNWD 253 >gi|325924016|ref|ZP_08185599.1| hypothetical protein XGA_4655 [Xanthomonas gardneri ATCC 19865] gi|325545510|gb|EGD16781.1| hypothetical protein XGA_4655 [Xanthomonas gardneri ATCC 19865] Length = 283 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 67/249 (26%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 21 SPGQIDGERGSNQKRAVSGFQAAHNIKVTGELDDATWQALQADATPALVQYTLTAADVAG 80 Query: 186 LLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 + +P+ E + + R L I + N Sbjct: 81 PFQPIPKGPAEQAKLPSLGYTSVDEALGERFHADPELLRQLNPGVDLSKAGGVIQVPNID 140 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + + G + + Sbjct: 141 GVPPLAKPAKLVVDKSESTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKVLGVARDPVF 200 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + + G N + I+ + +H TPEP + Sbjct: 201 KYNPKLFWDAKKGDQKATLPSGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 256 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 257 GCVRLTNWD 265 >gi|148653730|ref|YP_001280823.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] gi|148572814|gb|ABQ94873.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] Length = 417 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 65/250 (26%), Gaps = 29/250 (11%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV------PVDLRIRQLQVNLM 181 + + + A++ FQ GL + +D T EA+ + + + L Sbjct: 159 GAVDGYWGKNTQKAMQAFQQAQGLPVTDTLDQKTWEALLKGSGQNDNLGQKPVLISYTLK 218 Query: 182 RIKK---LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 G+ E +V + + Sbjct: 219 DSDVNIKTTTIPAGVEAKSKLEGLYYESIPEALGEKFHMSVSYLKQLNPNAKFVTGETLT 278 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSP---- 291 ++N I + + +Q +N + G + Sbjct: 279 VYN-PGRANTKAISRVVADKNQQTLYAYDKDNKLVASYPTTVGSTATPSPTGTHKVKVKV 337 Query: 292 --------EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 + PG N + I + +H +P+P + R ++GC Sbjct: 338 SDPNYTHTDADGKQTVLPPGPNNPVGRVWIGLDKP-SYGIHGSPDPERIS---RQASAGC 393 Query: 344 VRVRNIIDLD 353 +R+ N + Sbjct: 394 IRLTNWDAMA 403 >gi|294625916|ref|ZP_06704529.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599768|gb|EFF43892.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 335 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 65/252 (25%), Gaps = 28/252 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 73 SPGQIDGERGSNQKRAVSGFQAAHNIKATGELDDATWQALQADTTPALVQYTLTDADVAG 132 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 133 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIQVPNID 192 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + + G + + Sbjct: 193 GVPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKILGISRDPVF 252 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + G N + I+ + +H TPEP + Sbjct: 253 KYNPKLFWDAKKGEQKATLPAGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 308 Query: 342 GCVRVRNIIDLD 353 GCVR+ N + Sbjct: 309 GCVRLTNWDVVA 320 >gi|190891428|ref|YP_001977970.1| hypothetical protein RHECIAT_CH0001822 [Rhizobium etli CIAT 652] gi|190696707|gb|ACE90792.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 330 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 38/295 (12%), Positives = 82/295 (27%), Gaps = 34/295 (11%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + ++ RL+ L +G + V+ AV +Q + L D + + Sbjct: 46 DPDPAIVRLQVLLDRAG--SSPGVIDGLSGENVDKAVAGYQAMNKLPVDSRPDPDLVSRL 103 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PAASLEAVENGKVGLRSTVIVGRV 224 + V+ L+++ + E + + + Sbjct: 104 EDN-SPIVATYVVSPEDATGLVDRIPEDYGEKAKMQMLGYTSVAEKLSERFHMDLDLLKA 162 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVF 282 + + +P + + + Q Y +D ++ + G + Sbjct: 163 LNPASQFAAGDTVWVVDPGPPREGKVKRIEADRKTGQVLAYGEDGSVLAVYPATIGSKDN 222 Query: 283 VEEVDWNSPEP----------PNFIFRQ---------DPGKINAMASTKIEFYSRNNTYM 323 + + P F+Q G + + I+ + Sbjct: 223 PSPSGKHKVKGVARMPVYRYDPRLNFKQGKNDKVLTIPKGPNGPVGTVWIDLTEP-TYGI 281 Query: 324 HDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 H TPEP L + V + GCVR+ N +L + P + K Sbjct: 282 HGTPEPKLIDKVG---SHGCVRLTNWDAEELAGMV---KPGVPVDFVNRSPAAPK 330 >gi|31790351|gb|AAP58608.1| hypothetical protein [uncultured Acidobacteria bacterium] Length = 335 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 80/253 (31%), Gaps = 45/253 (17%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +A + R +L + + + + +N+P L +NGK + VG Sbjct: 58 QATDTNESERSDKLTGGHIETAEFAPDQ-PDIRLTLNVPTFRLTLWQNGKEVKSYYIGVG 116 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + I I++NP W+ P S ++M K V Sbjct: 117 MKEHPLDIGAREAREIIWNPAWIPPPSDWVREM-----------------------KGVS 153 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 EV + N + KI ++ +H + + G Sbjct: 154 PGEV------------IKASDPRNPLGKLKI--PLGDSYLIH--QARGWSDVGNL-VSHG 196 Query: 343 CVRVRNII--DLDV-WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 CVR+ DL + + S IE + KT V+ + + V Y + + Sbjct: 197 CVRMPRPELYDLADKIVAARSLPVSSKRIEAAKHSFKTLVVRFDSPLSVDINYDTM-VIE 255 Query: 400 DSIIQFRDDIYGL 412 D + D+YG Sbjct: 256 DGTLHLYPDVYGR 268 >gi|77748712|ref|NP_643674.2| hypothetical protein XAC3367 [Xanthomonas axonopodis pv. citri str. 306] Length = 328 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 65/252 (25%), Gaps = 28/252 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 66 SPGQIDGERGSNQKRAVSGFQAAHNIKATGELDDATWQALQADTTPVLVQYTLTDADVAG 125 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 126 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIEVPNID 185 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + + G + + Sbjct: 186 GVPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKILGISRDPVF 245 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + G N + I+ + +H TPEP + Sbjct: 246 KYNPKLFWDAKKGEQKATLPAGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 301 Query: 342 GCVRVRNIIDLD 353 GCVR+ N + Sbjct: 302 GCVRLTNWDVVA 313 >gi|122879074|ref|YP_199818.6| hypothetical protein XOO1179 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 330 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 64/249 (25%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 68 SPGQIDGERGSNQKRAVSGFQAAHKIKVTGELDDATWQALQADTTPALVQYTLTDADVAG 127 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 128 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIQVPNID 187 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 P + K ++ + + G + + Sbjct: 188 GAPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIRRWKILGVARNPVF 247 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + PG N + I+ + +H TPEP + Sbjct: 248 KYNPTLFWDAKKGEQKATLPPGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 303 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 304 GCVRLTNWD 312 >gi|332970006|gb|EGK09005.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. 1501(2011)] Length = 455 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 63/249 (25%), Gaps = 24/249 (9%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP---VDLRIRQLQVNL 180 + + + A++ FQ GL + +D T EA+ + + Sbjct: 198 YHGVGAVDGWWGKNTQKAMQAFQQAKGLPVTNELDQKTWEALKSGEFATKPVLISYTLTD 257 Query: 181 MRIKK-LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + + G E + + + + Sbjct: 258 SDVNIKTTKIPEGAEAKSKLEGMYYESVAEAMAEKFHMDISYLKQLNPNASFKAGETLTV 317 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSP----- 291 +N ++ + + + Q + + G + Sbjct: 318 YN-PGRANKTTVTRVVADKNSQTLYAYDKQDKLVASYPTTVGSTATPSPTGTHKVQTKVS 376 Query: 292 -------EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 + PG N + I + +H +P+P + R ++GC+ Sbjct: 377 DPNYTHTDGDGKQTIIPPGPNNPVGRVWIGLSKP-SYGIHGSPDPERIS---RQASAGCI 432 Query: 345 RVRNIIDLD 353 R+ N L Sbjct: 433 RLTNWDALA 441 >gi|312885582|ref|ZP_07745218.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603] gi|311301894|gb|EFQ78927.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603] Length = 468 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 101/257 (39%), Gaps = 15/257 (5%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +R++ VN+ R++ + G Y+ +NIP+ +L+ G + V VG+ + Sbjct: 211 PEASLRRVAVNMERLRWMPVN--GRTYIQINIPSLTLKLHR-GDTDISYRVAVGKRETPA 267 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EV 286 + + I+ P +P + + + + ++++ + D GK + + Sbjct: 268 LMASGALTSIVVGPP--VPDN---RRWLPPSISNISSVEEHGFQVYDRNGKWIDPTVANI 322 Query: 287 DWNSPEPPNFIFRQDP--GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 P + P G + ++ +L+ ++G + Sbjct: 323 KMARQNPAKYKLISAPAVGPGKGSGIL-FKMNGIAGVHLLGCTGGLLYKPRQPATSNGTI 381 Query: 345 RVRNIIDLDVWLLKDTPT-WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 ++ +L LLK + S + V+ ++ + + +PV+ Y++ KD ++ Sbjct: 382 QLVQAENLADALLKGDNSLHSAEQLHRVIARKERSNYRFKKPMPVYITYLTCAV-KDGLL 440 Query: 404 QFRDDIYGLDNVHVGII 420 + +D+Y D+ ++ Sbjct: 441 ETYEDVYHKDDHLASVM 457 >gi|93006461|ref|YP_580898.1| ErfK/YbiS/YcfS/YnhG [Psychrobacter cryohalolentis K5] gi|92394139|gb|ABE75414.1| ErfK/YbiS/YcfS/YnhG [Psychrobacter cryohalolentis K5] Length = 474 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 31/250 (12%), Positives = 67/250 (26%), Gaps = 28/250 (11%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV---DLRIRQLQVNLM 181 + + + A+ FQ GL +G +D T +A+N + + + Sbjct: 216 ASPGAIDGGWGMNSKKALINFQTMQGLPANGKMDQKTWDALNKNIPANKPVLVTYTITED 275 Query: 182 RIKKLLEQKMGL-RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + E V + + Sbjct: 276 DVNTNFATMPADSEAKSKMKGLYYQDIKEMFGERFHMDVRYLDKLNKNKQYKVGETITVL 335 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEV 286 N P ++A Y +++ + K V ++ Sbjct: 336 NTR--APLKQRINRVVANKADKTLYAYNDDKLVATYPTTVGSDSTPSPQGTFKIVNKVKM 393 Query: 287 DWNSPEPPNFIFRQ----DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 W ++ PG + + + + +H +P+P + R ++G Sbjct: 394 PWYKATVGEGADKKVHMLPPGPNSPVGVVWMGLSKP-SYGLHGSPKPEGIS---RQASAG 449 Query: 343 CVRVRNIIDL 352 CVR+ N L Sbjct: 450 CVRLTNWDVL 459 >gi|71066012|ref|YP_264739.1| ErfK/YbiS/YcfS/YnhG protein family protein [Psychrobacter arcticus 273-4] gi|71038997|gb|AAZ19305.1| possible ErfK/YbiS/YcfS/YnhG protein family [Psychrobacter arcticus 273-4] Length = 473 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 67/250 (26%), Gaps = 28/250 (11%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV---DLRIRQLQVNLM 181 + + + A+ FQ GL +G +D T A+N + + + Sbjct: 215 ASPGAIDGGWGMNSKKALINFQTMQGLPANGKMDQKTWNALNKNITANKPVLVTYTITED 274 Query: 182 RIKKLLEQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + G + E V + + Sbjct: 275 DVNTNFATMPTGSEAKSKMKGLYYQDIKEMFGERFHMDVRYLDKLNKNKQYKVGETITVL 334 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEV 286 N P ++A Y +++ + K V ++ Sbjct: 335 NTR--APLKQRINRVVANKADKTLYAYNDDKLVATYPTTVGSDSTPSPQGTFKIVNKVKM 392 Query: 287 DWNSPEPPNFIFRQ----DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 W ++ PG + + + + +H +P+P + R ++G Sbjct: 393 PWYKATVGEGTDKKVHMLPPGPNSPVGVVWMGLSKP-SYGLHGSPKPEGIS---RQASAG 448 Query: 343 CVRVRNIIDL 352 CVR+ N L Sbjct: 449 CVRLTNWDVL 458 >gi|325927923|ref|ZP_08189147.1| hypothetical protein XPE_3188 [Xanthomonas perforans 91-118] gi|325541763|gb|EGD13281.1| hypothetical protein XPE_3188 [Xanthomonas perforans 91-118] Length = 309 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 65/249 (26%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 47 SPGQIDGERGSNQKRAVSGFQAAHNIKATGELDDATWQALQADTTPALVQYTLTDADVAG 106 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + L + I + N Sbjct: 107 PFKPIPKGPAEQAKLTALGYASVDEALGERFHADPALLAQLNPGVDLSKAGSVIQVPNID 166 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + L + G + + Sbjct: 167 GVPPLAKPAKLVVDKSDSTLRLLDADGKVYAQFPVSSGSKHDPLPIGRWKILGISRDPVF 226 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + + G N + I+ + +H TPEP + Sbjct: 227 KYNPKLFWDAKKGDQKATLPAGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 282 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 283 GCVRLTNWD 291 >gi|294665945|ref|ZP_06731210.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604300|gb|EFF47686.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 335 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 33/252 (13%), Positives = 65/252 (25%), Gaps = 28/252 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 73 SPGQIDGERGSNQKRAVSGFQAAHNIKATGELDDATWQALQADTTPALVQYTLTDADVAG 132 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 133 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIQVPNID 192 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + + G + + Sbjct: 193 GVPPLAKPAKLVVDRSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKILGISRDPVF 252 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + G N + I+ + +H TPEP + Sbjct: 253 KYNPKLFWDAKKGEQKATLPAGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 308 Query: 342 GCVRVRNIIDLD 353 GCVR+ N + Sbjct: 309 GCVRLTNWDVVA 320 >gi|89071145|ref|ZP_01158340.1| hypothetical protein OG2516_12809 [Oceanicola granulosus HTCC2516] gi|89043302|gb|EAR49526.1| hypothetical protein OG2516_12809 [Oceanicola granulosus HTCC2516] Length = 327 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 75/267 (28%), Gaps = 34/267 (12%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAY----VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L +L + LD + D ESA++ F+ R G G +D+ +A+ Sbjct: 52 ALTAKLQVL--LDRAAISPGVIDGRKGGMTESALRAFERREGFPEDGALDADVWQALQSD 109 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP-AASLEAVENGKVGLRSTVIVGRVDRQ 227 + +++ L + A E V + Sbjct: 110 GPALTASYTITEQDHANIVDSLPEDYARLAEMDWLGYTSAAEKIAEDFHMDVDFLQAMNP 169 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN----NIHMIDEKGKEVFV 283 + P + + ++ + Y N + + Sbjct: 170 ASSFAVGDEITVMQPAGRQEGEVARIEIDKPNSRLVAYDGSGAVLVNYPVAVGSDQTPSP 229 Query: 284 E--------EVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDT 326 V+ P+ F+Q PG + I+ +H T Sbjct: 230 SGTHEVVAVAVEPTYSYLPDTNFQQGDNDEPLTLPPGPNGPVGLVWIDLSKP-TYGLHGT 288 Query: 327 PEP-ILFNNVVRFETSGCVRVRNIIDL 352 P+P LFN ++ GCVR+ N L Sbjct: 289 PDPASLFN----AQSHGCVRMTNWDAL 311 >gi|21232639|ref|NP_638556.1| hypothetical protein XCC3210 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767252|ref|YP_242014.1| hypothetical protein XC_0920 [Xanthomonas campestris pv. campestris str. 8004] gi|188990367|ref|YP_001902377.1| conserved exported protein [Xanthomonas campestris pv. campestris str. B100] gi|21114444|gb|AAM42480.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572584|gb|AAY47994.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732127|emb|CAP50319.1| conserved exported protein [Xanthomonas campestris pv. campestris] Length = 324 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 67/249 (26%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + A+ FQ H + +G +D +T +A+ + Q + + Sbjct: 62 SPGQIDGQRGSNQKRAISGFQAAHRIKVTGELDDATWQALQADTTPALVQYTLTDADVAG 121 Query: 186 LLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + +PA + E + + R L + I Sbjct: 122 PFQPIPDRPAEQAKLPALGYVSIEEALGERFHADPDLLRQLNPGVDLSKAGSVIQAPNVD 181 Query: 245 VIPR-SIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 +P S K ++ + G + + Sbjct: 182 GVPALSKPAKLVIDKSDSTLRLFDAQGKVYAQFPVSSGSKHDPLPIGRWKILGISRDPKF 241 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + +P PG N + I+ + +H TPEP + Sbjct: 242 HYNPKLFWDAKPGEGKATLPPGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 297 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 298 GCVRLTNWD 306 >gi|194366782|ref|YP_002029392.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas maltophilia R551-3] gi|194349586|gb|ACF52709.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 70/271 (25%), Gaps = 34/271 (12%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYV----ESAVKLFQMRHGLDPSGMVDSSTLE 163 V R L LD + D V AV FQ HGL +G VD T + Sbjct: 36 GPDVGP-RSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLTVTGEVDDPTWK 94 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A+ + + + + G E ++ + Sbjct: 95 ALQADTVEPLASYTLTSEDVAGPFQAIPKGPAAQARLKSLGFSSVEEALGERFHASPELL 154 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGK 279 + L +RI K ++ Q L + G Sbjct: 155 KALNPGIDLAKAGSRIQVPNIAPAALPKAAKIVVDKSDSTLQLLDAQGKLIAQVPVSSGS 214 Query: 280 EVFVEEVD--------------------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + + W++ + PG N + I+ + Sbjct: 215 QHDPLPIGEWKILGVYRDPPFHYNPKLFWDARKGEK-KATLPPGPNNPVGRVWIDLSKPH 273 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 +H TPEP + GCVR+ N Sbjct: 274 -YGLHGTPEPGHVGKTE---SHGCVRMTNWD 300 >gi|78049042|ref|YP_365217.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037472|emb|CAJ25217.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 335 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 65/249 (26%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 73 SPGQIDGERGSNQKRAVSGFQAAHNIKATGELDDATWQALQADTTPALVQYTLTDADVAG 132 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + L + I + N Sbjct: 133 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLAQLNPGVDLSKAGSVIQVPNID 192 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + L + G + + Sbjct: 193 GVPPLAKPAKLVVDKSDSTLRLLDADGKVYAQFPVSSGSKHDPLPIGRWKILGISRDPVF 252 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + + G N + I+ + +H TPEP + Sbjct: 253 KYNPKLFWDAKKGDQKATLPAGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 308 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 309 GCVRLTNWD 317 >gi|325916883|ref|ZP_08179131.1| hypothetical protein XVE_3111 [Xanthomonas vesicatoria ATCC 35937] gi|325536928|gb|EGD08676.1| hypothetical protein XVE_3111 [Xanthomonas vesicatoria ATCC 35937] Length = 271 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 68/249 (27%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + +G +D +T +A+ + Q + + Sbjct: 9 SPGQIDGERGSNQKRAVSGFQAAHNIKVTGELDDATWQALQADSTPALVQYTLTDADVAG 68 Query: 186 LLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPY 243 + +P+ E+ + + R + + + N Sbjct: 69 PFQPIPKGPAEQAKLPSLGYTSVDESLGERFHADPALLRQLNPGVDLGKAGGVIQVPNVD 128 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + + G + + Sbjct: 129 GVAPLAKPAKLVVDKSESTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKILGISRDPVF 188 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + + G N + I+ + +H TPEP + Sbjct: 189 KYNPKLFWDAKKGDQKATLPSGPNNPVGRVWIDLSKPH-YGLHGTPEPGHVGKTE---SH 244 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 245 GCVRLTNWD 253 >gi|209549005|ref|YP_002280922.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534761|gb|ACI54696.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 332 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 84/296 (28%), Gaps = 34/296 (11%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + ++ RL+ L +G + V AV F+ + L G D + + Sbjct: 46 DPDPAIVRLQVLLDRAG--ASPGVIDGLTGENVNKAVAGFEAMNKLPIDGRPDPDVVSRL 103 Query: 166 NVPVDLRI-RQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVGR 223 + I V+ K L+++ + + E + + Sbjct: 104 EEGAQIPIVESYVVSADDAKDLVDRIPEDYGEKAKMQSLGYTSVAEKLSERFHMGIDLLN 163 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEV 281 + NP + + + Q Y +D + + G E Sbjct: 164 ALNPASQFAPGDTVWVVNPGPPRKGKVKRIEADRKTGQVLAYAEDGALLAVYPATIGSED 223 Query: 282 FVEEVDWNSPEP----------PNFIFRQ---------DPGKINAMASTKIEFYSRNNTY 322 + + P F+Q G + + I+ Sbjct: 224 NPAPSGKHKVKGVARMPVYRYDPKRNFKQGKNDKVLTIPKGPNGPVGTVWIDLTEP-TYG 282 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 +H TPEP L + V + GCVR+ N + +L + P ++ K Sbjct: 283 IHGTPEPKLIDKVG---SHGCVRLTNWDVEELAGMV---KPGVLVDFVDRSSAAPK 332 >gi|307946679|ref|ZP_07662014.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770343|gb|EFO29569.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 97 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 +FN R + GC+RV DL LL +S+ +E++ +K T +KL + VH Sbjct: 1 MFNRAQRDFSHGCIRVAKPFDLGDVLLSP-EGYSKGKLEKIRDGQKRTVIKLNKPLKVHL 59 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 Y++AW KD FR DIY D V + + Sbjct: 60 TYLTAWMNKDGSTHFRRDIYSRDAVLLKALR 90 >gi|289667983|ref|ZP_06489058.1| hypothetical protein XcampmN_05628 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 335 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 65/249 (26%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + SG +D +T +A+ + Q + + Sbjct: 73 SPGQIDGERGSNQKRAVSGFQAAHNIKVSGELDDATWQALQADTTPALVQYTLTDADVAG 132 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 133 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIQVPNID 192 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + + G + + Sbjct: 193 GVPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKILGVARDPVF 252 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + + G + + I+ + +H TPEP + Sbjct: 253 KYNPKLFWDAKKGDQKATLPAGPNSPVGRVWIDLSKPH-YGLHGTPEPGHVGKTQ---SH 308 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 309 GCVRLTNWD 317 >gi|289662184|ref|ZP_06483765.1| hypothetical protein XcampvN_03553 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 293 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 65/249 (26%), Gaps = 28/249 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AV FQ H + SG +D +T +A+ + Q + + Sbjct: 31 SPGQIDGERGSNQKRAVSGFQAAHNIKVSGELDDATWQALQADTTPALVQYTLTDADVAG 90 Query: 186 LL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPY 243 G E + + R L + I + N Sbjct: 91 PFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSKAGSVIQVPNID 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD------------- 287 V P + K ++ + + G + + Sbjct: 151 GVPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIGRWKILGVARDPVF 210 Query: 288 ------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + + G + + I+ + +H TPEP + Sbjct: 211 KYNPKLFWDAKKGDQKATLPAGPNSPVGRVWIDLSKPH-YGLHGTPEPGHVGKTQ---SH 266 Query: 342 GCVRVRNII 350 GCVR+ N Sbjct: 267 GCVRLTNWD 275 >gi|260467449|ref|ZP_05813619.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259028785|gb|EEW30091.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 334 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 74/275 (26%), Gaps = 34/275 (12%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + AV +Q +GL G + T + + R + L Sbjct: 59 SPGLIDGRLSENFAKAVGAYQTANGLQADGKLTRETWDKLIA-ASARPALIAYELAPKDV 117 Query: 186 LLEQKMGLRYVLVNIPA----ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR-IMF 240 + + + + A+E + + ++ ++ Sbjct: 118 RGPFTKRIPARMEKMASLRRLGYRNAMERLAERFHVSEKLLKMLNPGATFRKAGTMLMVP 177 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM-------------IDEKGKEVFVEEVD 287 + P + I + + + L + + EV + Sbjct: 178 DVGRGDPPAAIAGVEVDKGARVVRVLDASGKWLAVYPASIGSDEKPAPSGTAEVRRVVHN 237 Query: 288 WNSPEPPNF---------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 P F F G N + S I+ + +H TPEP Sbjct: 238 PTYHYDPKFAFKGIRTKRPFTIAAGPNNPVGSVWIDLSIE-SYGIHGTPEPGKIGTT--- 293 Query: 339 ETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEV 371 + GC+R+ N DL + + T + + +V Sbjct: 294 FSHGCIRLTNWDAEDLASMVQEGTTVNFKDEMADV 328 >gi|197106602|ref|YP_002131979.1| hypothetical protein PHZ_c3141 [Phenylobacterium zucineum HLK1] gi|196480022|gb|ACG79550.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 358 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 66/253 (26%), Gaps = 35/253 (13%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + A + +AV F+ GL G +D+ + + + + Sbjct: 86 SPGVIDGADGENLMNAVAAFERARGLPEDGRLDAEVWALLVRDTRPVVTDYVITEADVAG 145 Query: 186 LLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 +++ Y + E + RI+ Sbjct: 146 PFTEEIPSDYEEMAELDALGFTSPREALAEKFHMDESLLAALNPGADFSVAGTRIVVAAP 205 Query: 244 W--VIPRSIIQKDMMALLRQDPQYLKDN------------------------NIHMIDEK 277 +P + ++ Q Y D N+ D Sbjct: 206 GPETLPAPVTLVEVDKSRNQVRAYGADGALLASYPATVGSSDMPTPDGEWAVNLVAYDPH 265 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 +++++ + PG N + + I+ + +H PEP L Sbjct: 266 WN-YDPDKLNFGDKSAGKLDIK--PGPNNPVGAVWIDLT-KETYGIHGAPEPRLVGKT-- 319 Query: 338 FETSGCVRVRNII 350 + GCVR+ N Sbjct: 320 -ASHGCVRLTNWD 331 >gi|121606471|ref|YP_983800.1| ErfK/YbiS/YcfS/YnhG family protein [Polaromonas naphthalenivorans CJ2] gi|120595440|gb|ABM38879.1| ErfK/YbiS/YcfS/YnhG family protein [Polaromonas naphthalenivorans CJ2] Length = 344 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 71/276 (25%), Gaps = 30/276 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G +V LR ++++ + AF A + V FQ +G +G +D Sbjct: 59 VLAQGARGEAV--LRAQILLDHAWFSPGEIDGAFGANMRRMVAAFQTANGQKSTGRIDGE 116 Query: 161 TLEAMNVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRST 218 T +A+ + + + + + + +E + Sbjct: 117 TWKALAGDAPAPVLSEYTITAEDAAGPYARLPADMMKRAQLKSLGYETLLEALGEKFHCS 176 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--- 275 R + + I+ P + + L + Sbjct: 177 PKWLRDANRGHTFKAGDKIIVPAPGSDKAPAGAASIRIDKSEHVLYLLDKAERPVAAFPI 236 Query: 276 EKGKEVFVEEVDWNSPEPP-------------------NFIFRQDPGKINAMASTKIEFY 316 G + + + G N + + Sbjct: 237 SMGGASDPLPIGRMEIKNAAKDPVFTFNPALLKGTKKTDTKAIIPAGPNNPVGVYWLGLS 296 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +H TPEP + ++GC+ + N L Sbjct: 297 KAHW-GIHGTPEPERVGSSE---SNGCIHLTNWDVL 328 >gi|119384838|ref|YP_915894.1| ErfK/YbiS/YcfS/YnhG family protein [Paracoccus denitrificans PD1222] gi|119374605|gb|ABL70198.1| ErfK/YbiS/YcfS/YnhG family protein [Paracoccus denitrificans PD1222] Length = 493 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 66/243 (27%), Gaps = 29/243 (11%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRIKKLLEQKMGLRYVL 197 ESA+ FQ R GL +G +D + + + + + L+++ Sbjct: 106 ESAIMAFQRRSGLPMTGRMDHAVWDLLQGYAAAPLTTAYTITDEDTTGLVDRIPSDYAEK 165 Query: 198 VNIP-AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 + +E P I ++ + + Sbjct: 166 AAMTSQGYTSVLEKLAERFHMDEKFLAKMNPGAAFRPGETIHATVPAKPIRATVTRIIVD 225 Query: 257 ALLRQDPQYLKDNNIHMIDE------------KGKEVFVEEVDWNSPEPPNFIFRQ---- 300 R+ Y N+ V ++ P+ F+Q Sbjct: 226 KETRRVAAYDAKGNMVADYPATVGSADTPSPHGNHVVDAVALNPTYTYNPHRNFKQGQND 285 Query: 301 -----DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLD 353 PG + + I+ +H T P + ++ GCVR+ N +L Sbjct: 286 RVLTIPPGPNGPVGNVWIDLSEP-TYGIHGTATPS---QLFLNQSHGCVRLTNWDAWELA 341 Query: 354 VWL 356 + Sbjct: 342 HMV 344 >gi|114707249|ref|ZP_01440147.1| hypothetical protein FP2506_05061 [Fulvimarina pelagi HTCC2506] gi|114537445|gb|EAU40571.1| hypothetical protein FP2506_05061 [Fulvimarina pelagi HTCC2506] Length = 485 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 52/353 (14%), Positives = 95/353 (26%), Gaps = 45/353 (12%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLG 105 ++ A + S + E+ E+ Q I P++ Sbjct: 149 PQPDESM-GPQAELPAPDASIVTDGPTESANPLEQPFQE-QTIEETDPAPQVATPQGE-- 204 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---LDPSGMVDSSTL 162 + +V L+ L +G + + V AV ++ + G V + L Sbjct: 205 DKKAAVAALQVILDRAGM--SPGVIDGRMGSNVNKAVAAYEEKFGRKLSTGDSRVLAEML 262 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV-NIPAASL-EAVENGKVGLRSTVI 220 + P ++ ++ + ++ Y +PA S VE Sbjct: 263 DESGGPA---VKTYELTAEDVAGPYVAQIPTDYAEKAKLPAMSFERPVEKLAEKFHMDEA 319 Query: 221 VGRVDRQTPILHSRINRI-MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---- 275 + RI + N + + + Q Y + Sbjct: 320 YLKEINPGADFSRAGTRIKVMNVGENVDGKVARIVADKGREQVRVYDALGELIAAYPSTI 379 Query: 276 --------EKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSR 318 +V D N P F+Q PG + S I Sbjct: 380 GSASTPSPSGTVQVNRIAFDPNYTYNPKINFKQGNNDKVLTIPPGPNGPVGSIWIALSKP 439 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIE 369 +H TPEP + GCVR+ N +L + P + +E Sbjct: 440 -TYGIHGTPEPSKIGKTN---SHGCVRLTNWDAYELAKMVR---PGVTVEFVE 485 >gi|326562620|gb|EGE12931.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis 46P47B1] Length = 356 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 43/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV---DLRIRQLQVNLM 181 + + + A+ FQ GL+P+G ++ +T +A+N + + + Sbjct: 97 ASPGPIDGGWGMNSKKALMNFQKIKGLEPTGKMNQATWDALNQNIATNQPVLVSYTITEA 156 Query: 182 RIKKLLEQKMGL-RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 K + E V + + + + Sbjct: 157 DAKGPYKTLPNDAESRSKLKALGYESIQEMLGERFHMDVAYLKKLNPNKRFVAGESITVI 216 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEV 286 N P + ++A + Y + + K K + ++ Sbjct: 217 NTG--KPFEGVVTRVVADRKDKILYAYHEDQLVATYPTTVGGEASTTPGGKYKIINKVKM 274 Query: 287 DWNSP-----EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + N ++ PG + + + ++ + +H +P P + R + Sbjct: 275 PTYKATVNRDDEDNKVYYLPPGPNSPVGVVWMGL-NKPSYGIHGSPIPEGIS---RQSSL 330 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 GC+R+ N W + V++ T ++ Sbjct: 331 GCIRLTN--------------WDVLELVAVIENGATVEIR 356 >gi|326560456|gb|EGE10838.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis 7169] gi|326561659|gb|EGE11996.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis 103P14B1] gi|326564212|gb|EGE14448.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis 12P80B1] gi|326565811|gb|EGE15973.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis BC1] gi|326570464|gb|EGE20504.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis BC8] gi|326571148|gb|EGE21172.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis BC7] gi|326573440|gb|EGE23408.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis 101P30B1] gi|326575663|gb|EGE25586.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis CO72] gi|326577128|gb|EGE27022.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis O35E] Length = 353 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 43/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV---DLRIRQLQVNLM 181 + + + A+ FQ GL+P+G ++ +T +A+N + + + Sbjct: 94 ASPGPIDGGWGMNSKKALMNFQKIKGLEPTGKMNQATWDALNQNIATNQPVLVSYTITEA 153 Query: 182 RIKKLLEQKMGL-RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 K + E V + + + + Sbjct: 154 DAKGPYKTLPNDAESRSKLKALGYESIQEMLGERFHMDVAYLKKLNPNKRFVAGESITVI 213 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEV 286 N P + ++A + Y + + K K + ++ Sbjct: 214 NTG--KPFEGVVTRVVADRKDKILYAYHEDQLVATYPTTVGGEASTTPGGKYKIINKVKM 271 Query: 287 DWNSP-----EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + N ++ PG + + + ++ + +H +P P + R + Sbjct: 272 PTYKATVNRDDEDNKVYYLPPGPNSPVGVVWMGL-NKPSYGIHGSPIPEGIS---RQSSL 327 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 GC+R+ N W + V++ T ++ Sbjct: 328 GCIRLTN--------------WDVLELVAVIENGATVEIR 353 >gi|323701941|ref|ZP_08113610.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum nigrificans DSM 574] gi|323533027|gb|EGB22897.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum nigrificans DSM 574] Length = 314 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 83/263 (31%), Gaps = 78/263 (29%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V+ L+ L + G ++ +D + AV+ FQ H L G+VD T Sbjct: 48 PLMQGEDVKNLQLELQVLGYY--QGPINGIYDFLTQKAVQQFQADHRLKADGVVDEPTWY 105 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 M RQ+++ + + + L G ++++ L + +GK + + G Sbjct: 106 QM-------ARQIELPVTKSETLPP-PTGQIALIIDTTKRKLTVMADGKPYKQFNIACGA 157 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + +P+ + V Sbjct: 158 PETPSPVGSWQ----------------------------------------------VAH 171 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSG 342 + ++W + + + Y +H T +P + + G Sbjct: 172 KAINW----------------GDGFGTRWLGLNVPWGIYGIHGTNKPFSIGT---YASHG 212 Query: 343 CVRVRN--IIDLDVWLLKDTPTW 363 C+R+ N + +L W+ K TP + Sbjct: 213 CIRMHNSSVEELYPWVPKGTPVY 235 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V ++ L G + F +E AVK F+ +GL V+ Sbjct: 251 LVQGDRGADVYEVQRTLKRLGYYK--AEVDGIFGYQMEQAVKKFRKANGLPMDNQVNEVM 308 Query: 162 LEAMN 166 +A+ Sbjct: 309 YQALG 313 >gi|296113079|ref|YP_003627017.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis RH4] gi|295920774|gb|ADG61125.1| ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis RH4] Length = 343 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 43/280 (15%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV---DLRIRQLQVNLM 181 + + + A+ FQ GL+P+G ++ +T +A+N + + + Sbjct: 84 ASPGPIDGGWGMNSKKALMNFQKIKGLEPTGKMNQATWDALNQNIATNQPVLVSYTITEA 143 Query: 182 RIKKLLEQKMGL-RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 K + E V + + + + Sbjct: 144 DAKGPYKTLPNDAESRSKLKALGYESIQEMLGERFHMDVAYLKKLNPNKRFVAGESITVI 203 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--------------EKGKEVFVEEV 286 N P + ++A + Y + + K K + ++ Sbjct: 204 NTG--KPFEGVVTRVVADRKDKILYAYHEDQLVATYPTTVGGEASTTPGGKYKIINKVKM 261 Query: 287 DWNSP-----EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + N ++ PG + + + ++ + +H +P P + R + Sbjct: 262 PTYKATVNRDDEDNKVYYLPPGPNSPVGVVWMGL-NKPSYGIHGSPIPEGIS---RQSSL 317 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 GC+R+ N W + V++ T ++ Sbjct: 318 GCIRLTN--------------WDVLELVAVIENGATVEIR 343 >gi|254489520|ref|ZP_05102723.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. GAI101] gi|214042027|gb|EEB82667.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. GAI101] Length = 316 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 78/280 (27%), Gaps = 35/280 (12%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S +L+ L +G + ESA++ F+ R GL+ G++D A+ Sbjct: 38 QSAITVKLQVLLDQAG--ISPGVIDGYSGGMSESALRGFEAREGLEVDGVLDPEVWAALG 95 Query: 167 VP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PAASLEAVENGKVGLRSTVIVGRV 224 ++ + + L + + E ++ Sbjct: 96 GSNGGAILQSYTLTQEDLSNLSAEIPDNVAEKAKMEMLGFTRVTEALAERFHMDEDFLKL 155 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN----NIHMIDEKGKE 280 + + + + + ++ ++ + + N + + Sbjct: 156 LNPDAAFAEGDTITVTDTGPDLEGAGARIEIRKSEQRAVVFDAEGNMLTNYPVAIGSKET 215 Query: 281 -------------VFVE-----EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 + V++ + + PG + S I+ Sbjct: 216 PSPEGSLEVTAVAIDPTYSYRPSVNFEA-DGVKEELTLPPGPNGPVGSVWIDLSKP-TYG 273 Query: 323 MHDTPEPI-LFNNVVRFETSGCVRVRNII--DLDVWLLKD 359 +H T P LF+ + GCVR N +L + K Sbjct: 274 LHGTSAPAKLFS----ASSHGCVRFTNWDVKELAHMVSKG 309 >gi|150397326|ref|YP_001327793.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150028841|gb|ABR60958.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 463 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 86/340 (25%), Gaps = 53/340 (15%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 + +P +S+E + Y + L++ P P + G SS + L+ L G Sbjct: 151 NSLPSLSEEAAYDPQ-----YDNPLAQ---PMPPAMTVK-GKSSAEIAALQVFLDREGF- 200 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + + V A++ +Q G LE + L I + Sbjct: 201 -SPGVIDGKMGSNVTKAIEAWQQATGETLDPNNTEDILERLRFNGGLPITTYTITAADAA 259 Query: 185 KLLEQKMGLRYV-LVNIP-AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + Y +P + E R I Sbjct: 260 GPFVASIPEDYAHKAQLPHLSFTSVTEMLGEKFHMDEAYLRELNPGADFSIPGTTIKVVN 319 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE-------------VFVEEVDWN 289 + + + + R+ + + V D Sbjct: 320 PGAYKKGKVARIVADKGRKQVLAYDEAGQLLAAYPATIGSADTPSPSGTVNVERIAFDPG 379 Query: 290 SPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P F+Q PG + + I +H TPEP + Sbjct: 380 YTYNPKINFQQGANDRILQLQPGPNGPVGTVWIALSKP-TYGIHGTPEPSKIGKTQ---S 435 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + ++V T T Sbjct: 436 HGCIRLTN--------------WDATELGKMVSTGVTVEF 461 >gi|188579749|ref|YP_001923194.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179343247|gb|ACB78659.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 364 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 67/264 (25%), Gaps = 40/264 (15%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIK 184 + + A+K F GL + + + + + Q + +K Sbjct: 91 SPGAIDGRDGENLRGAIKAFAAAQGLPEGDRLTREVFDRLQATSKEPVVTQYTITDEDVK 150 Query: 185 KLLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++M + P E + L ++ Sbjct: 151 GPFVERMPTKMEEQAEVGPMRYTNTREMLAERFHMQRDLLSALNPDVPLDKAGGTLVVAA 210 Query: 243 YW----------VIPRSIIQKDMMALLRQDPQYLKDNNIHMI-------------DEKGK 279 + + + ++ ++ + +D + D K Sbjct: 211 VPPLGEGKVEGAPVAPKVTRIEVDKRTKRVRAFGEDGKLTADYPASIGSDEKPAPDGSAK 270 Query: 280 EVFVEEVDWNSPEPP--------NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 V W + P F PG N + I+ + +H TP+P Sbjct: 271 VKAVAFDPWYTYNPKYRFKGVKATKKFSIHPGPNNPVGLVWIDLSIP-SYGIHGTPDPEK 329 Query: 332 FNNVVRFETSGCVRVRN--IIDLD 353 + GC+R+ N DL Sbjct: 330 VGKTE---SHGCIRLTNWDARDLA 350 >gi|257453390|ref|ZP_05618685.1| ErfK/YbiS/YcfS/YnhG family protein [Enhydrobacter aerosaccus SK60] gi|257449142|gb|EEV24090.1| ErfK/YbiS/YcfS/YnhG family protein [Enhydrobacter aerosaccus SK60] Length = 439 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 77/243 (31%), Gaps = 33/243 (13%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--- 184 ++ + A+++FQ +H L + ++ +T A+ L + + +N + Sbjct: 197 GAVTGIMNKNTIKAMQIFQQKHNLPVTTTMNEATWSALTSNETLNKQPIFINYQLTRDDL 256 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + + ++Y A + + T L + ++NP Sbjct: 257 VITKVPRDMQYKSAREAVAE---------KFHMSQKLVSRLNPTTPLKAGNIITVYNP-- 305 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV---------------FVEEVDWN 289 P +++ +++ Y + ++ V Sbjct: 306 YQPNMTEVTKVVSDKKKNILYAYAASGELVASYPTTVGSNYTPSPSGTLKVKNRVLNPTY 365 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + + + PG N + I + +H +PEP L + + GCVR+ N Sbjct: 366 NTDFSSKEKWLPPGPNNPVGRAWIGLS-KRGYGIHGSPEPELISAQK---SHGCVRLTNW 421 Query: 350 IDL 352 L Sbjct: 422 DAL 424 >gi|319784207|ref|YP_004143683.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170095|gb|ADV13633.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 334 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 69/270 (25%), Gaps = 34/270 (12%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 AV FQ +GL G + T + + R +L R + Sbjct: 69 ENFTRAVSAFQAANGLPADGKLTRETWDKLVAT-SSRPAIETYDLTRKDVHGPFTRRIPA 127 Query: 196 VLVNIP----AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSI 250 + + A A+E + + + ++ P Sbjct: 128 RMERMARLPRLAYHNALEKMAERFHISEQLLERLNPGIGFRKAGQKLLVPAVTRGDPPQD 187 Query: 251 IQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPE--------------- 292 I + + + L + + G + + Sbjct: 188 IASVEVDKSARQVRVLDPSGKVLATYPASIGSQEKPAPSGQAEVKRVVHHPTYHYDPEFA 247 Query: 293 ----PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 F G N + S I+ ++ +H TP+P + GC+R+ N Sbjct: 248 FKGVRSKRPFTIAAGPNNPVGSVWIDLSI-DSYGIHGTPDPGKIGKT---FSHGCIRLTN 303 Query: 349 --IIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 DL + K T + V+ Sbjct: 304 WDAEDLASEVQKGTKVVFKDEAAGSVEQGS 333 >gi|218528492|ref|YP_002419308.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218520795|gb|ACK81380.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 369 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 73/282 (25%), Gaps = 42/282 (14%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + +++ L + + + A+K F GL + + + Sbjct: 80 DPLLVKVQVLLDRTRF--SPGAIDGRDGENLRGALKAFAAAQGLPEGDRLTREVFDRLQA 137 Query: 168 PVDLR-IRQLQVNLMRIKKLLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVIVGRV 224 + Q + +K +KM + P A E + Sbjct: 138 TGKEPVVTQYTITEEDVKGPFVEKMPAKMEEQAEVGPMRYTNAREMLAERFHMQRDLFSA 197 Query: 225 DRQTPILHSRINRIMFNPYW----------VIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L ++ + + + ++ ++ + +D + Sbjct: 198 LNPNVPLDKAGGTLVVAAVPPLGEGKVEGAPVAPKVTRIEVDKRTKRVRAFAEDGKLTAD 257 Query: 275 -------------DEKGKEVFVEEVDWNSPEPP--------NFIFRQDPGKINAMASTKI 313 D K V W + P F PG + + I Sbjct: 258 YPASIGSSEKPAPDGSAKVKAVAFDPWYTYNPKYQFKGVKATKKFSIHPGPNSPVGVVWI 317 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLD 353 + + +H TPEP + GC+R+ N DL Sbjct: 318 DLSIP-SYGIHGTPEPEKVGKTE---SHGCIRLTNWDARDLA 355 >gi|254559097|ref|YP_003066192.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] gi|254266375|emb|CAX22139.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 364 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 40/264 (15%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIK 184 + + A+K F GL + + + + Q + +K Sbjct: 91 SPGAIDGRDGENLRGALKAFAAAQGLPEGDRLTREIFDRLQATGKEPVVTQYTITEEDVK 150 Query: 185 KLLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +KM + P A E + L ++ Sbjct: 151 GPFVEKMPPKMEEQAEVGPMRYTNAREMLAERFHMQRDLFSALNPNVPLDKAGGTLVVAA 210 Query: 243 YW----------VIPRSIIQKDMMALLRQDPQYLKDNNIHMI-------------DEKGK 279 + + + ++ ++ + +D + D K Sbjct: 211 VPPLGEGKVEGAPVAPKVTRIEVDKRTKRVRAFAEDGKLTADYPASIGSSEKPAPDGSAK 270 Query: 280 EVFVEEVDWNSPEPP--------NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 V W + P F PG + + I+ + +H TPEP Sbjct: 271 VKAVAFDPWYTYNPKYQFKGVKATKKFSIHPGPNSPVGVVWIDLSIP-SYGIHGTPEPEK 329 Query: 332 FNNVVRFETSGCVRVRN--IIDLD 353 + GC+R+ N DL Sbjct: 330 VGKTE---SHGCIRLTNWDAHDLA 350 >gi|260467165|ref|ZP_05813343.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259029089|gb|EEW30387.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 505 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 74/296 (25%), Gaps = 40/296 (13%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG--LDPSGMVD 158 L LG V L+ L G + F + V+ A+ + G L + V Sbjct: 211 SLSLGAR-QDVAALQVLLDRGG--ASPGVIDGRFGSNVDKALAAYNEISGSNLKSTDAVG 267 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA--SLEAVENGKVGLR 216 A+ + + Y E Sbjct: 268 IQ--AALAQSGGDAFANYTITPEDAAGPYVASIPEDYSQKAQLDRMGYTSVPEALAERFH 325 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 + + + I + + + + + + +++ + Sbjct: 326 MDENYLKSINKGLDFNRPGTIIKVANFGKLVSTPVARIVADKGKKEVYAYDAGGKLVAAY 385 Query: 277 KG-------------KEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIE 314 V +D N PN F+Q PG + S I Sbjct: 386 PATIGSADTPSPTGIHTVSRIALDPNYTYNPNINFKQGQNDKILTIPPGPNGPVGSVWIA 445 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHI 368 +H TPEP + GCVR+ N +L + +P + + Sbjct: 446 LDKP-TYGIHGTPEPSKIGKTE---SHGCVRLTNWDARELAKLV---SPGVTVEFV 494 >gi|163849861|ref|YP_001637904.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163661466|gb|ABY28833.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 369 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 67/264 (25%), Gaps = 40/264 (15%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIK 184 + + A+K F GL + + + + Q + +K Sbjct: 96 SPGAIDGRDGENLRGALKAFAAAQGLPEGDRLTREVFDRLQATGKEPVVTQYTITEEDVK 155 Query: 185 KLLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +KM + P A E + L ++ Sbjct: 156 GPFVEKMPAKMEEQAEVGPMRYTNAREMLAERFHMQRDLFSALNPNVPLDKAGGTLVVAA 215 Query: 243 YW----------VIPRSIIQKDMMALLRQDPQYLKDNNIHMI-------------DEKGK 279 + + + ++ ++ + +D + D K Sbjct: 216 VPPLGEGKVEGAPVAPKVTRIEVDKRTKRVRAFAEDGKLTADYPASIGSSEKPAPDGSAK 275 Query: 280 EVFVEEVDWNSPEPP--------NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 V W + P F PG + + I+ + +H TPEP Sbjct: 276 VKAVAFDPWYTYNPKYQFKGVKATKKFSIHPGPNSPVGVVWIDLSIP-SYGIHGTPEPEK 334 Query: 332 FNNVVRFETSGCVRVRN--IIDLD 353 + GC+R+ N DL Sbjct: 335 VGKTE---SHGCIRLTNWDARDLA 355 >gi|218458323|ref|ZP_03498414.1| hypothetical protein RetlK5_02246 [Rhizobium etli Kim 5] Length = 90 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 44/73 (60%), Positives = 56/73 (76%) Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV+N+ DL WLL++TP WSR +E+V+ + TP+KLA EVPV+FVYISAW D Sbjct: 1 GCVRVQNVRDLTNWLLRETPGWSRQQMEQVIASGVNTPIKLAAEVPVYFVYISAWGMPDG 60 Query: 402 IIQFRDDIYGLDN 414 I+QFRDDIY +D Sbjct: 61 IVQFRDDIYQMDG 73 >gi|222086478|ref|YP_002545012.1| hypothetical protein Arad_3040 [Agrobacterium radiobacter K84] gi|221723926|gb|ACM27082.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 528 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 62/283 (21%), Gaps = 31/283 (10%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P+ L G S + + + L G + V A+ +Q G Sbjct: 238 PAEPVITLK-GKSKMEITAIEVFLARQG--ISPGAIDGRMGGNVTKAIYAYQQMTGQTLD 294 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP--AASLEAVENGK 212 S LE + + + I + + Y E Sbjct: 295 PKDTDSILEQLRLSGGMPIINYTITPADAAGPYVASIPEDYAEKAQMPSLGYTSTTEMLA 354 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 + + I + K + R+ N Sbjct: 355 ERFHMDEGYLKELNPGVDFTVPGSTIKVVNTGPSKTGTVAKILADKGRKQVFAYDANGTL 414 Query: 273 MIDEKGK-------------EVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMAS 310 + V + P F+Q PG + Sbjct: 415 IAAYPASIGSTDTPSPSGTVTVERVAFNPGYTYNPKINFKQGANDKILDIPPGPNGPVGV 474 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + +H TPEP + GCVR+ N Sbjct: 475 VWMALSKP-TYGIHGTPEPSKIGKSQ---SHGCVRLTNWDATA 513 >gi|116253083|ref|YP_768921.1| ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257731|emb|CAK08829.1| putative ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 462 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 73/287 (25%), Gaps = 35/287 (12%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L+ L +G + + V A+ + G + LE + + Sbjct: 185 PEIVALQVFLDRAG--ASPGVIDGHMGSNVTKAILAYDQMTGSKLDPNNTDAILEELRMT 242 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PA-ASLEAVENGKVGLRSTVIVGRVDR 226 L + + ++ Y + P+ A E + Sbjct: 243 GGLPVVSYTITPADAAGPFVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLKEMN 302 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNIHMID--EKGKEVFV 283 I + + + R+ Y N+ G Sbjct: 303 PGADFTVPGTVIKVVNPGEPKSGAVARIIADKGRKQVFAYDGAGNLLAAYPASIGSTDTP 362 Query: 284 EE----------VDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMH 324 ++ P F+Q PG + + + +H Sbjct: 363 SPSGTVNVERVALNPGYTYNPKINFQQGANDKILNIPPGPNGPVGTVWMALSKP-TYGIH 421 Query: 325 DTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIE 369 TPEP R ++ GC+R+ N +L + P + ++ Sbjct: 422 GTPEPSKIG---RTQSHGCIRLTNWDATELAKMV---KPGVTVEFVD 462 >gi|222149174|ref|YP_002550131.1| hypothetical protein Avi_2943 [Agrobacterium vitis S4] gi|221736159|gb|ACM37122.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 423 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 76/301 (25%), Gaps = 38/301 (12%) Query: 98 PIRPLHLGNSS---VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P LG+S + L+ L G + V+ A++ +Q + G + Sbjct: 132 TAAPSTLGSSGKAKPEITALQVFLAREGF--SPGAIDGHMGMNVQKALEAWQQKTGETLN 189 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP--AASLEAVENGK 212 + +E + + L + ++ Y E Sbjct: 190 PNDTDAIMERLRMNGGLPFTSYTLTAADAAGPYVAEIPEDYSQKAAMPSLGYTSTTEMLA 249 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 + + + + + + R+ ++ Sbjct: 250 EKFHMDEGYLKALNPGVDFTVPGSTVKVVSIGQPHSGRVARIVAEKGRKQVLAYGEDGQL 309 Query: 273 MIDEKGKE-------------VFVEEVDWNSPEPPNFIFRQ---------DPGKINAMAS 310 + V D P F+Q PG + + Sbjct: 310 ITAYPASIGSNDTPSPSGTVQVQRVAFDPGYTYNPKVNFQQGANDKVLNIPPGPNGPVGT 369 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHI 368 I +H TPEP R ++ GC+R+ N +L + P + I Sbjct: 370 VWIALSKP-TYGIHGTPEPSKIG---RTQSHGCIRLTNWDATELAKMV---QPGVTVEFI 422 Query: 369 E 369 + Sbjct: 423 D 423 >gi|149186695|ref|ZP_01865006.1| ErfK/YbiS/YcfS/YnhG [Erythrobacter sp. SD-21] gi|148829603|gb|EDL48043.1| ErfK/YbiS/YcfS/YnhG [Erythrobacter sp. SD-21] Length = 281 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 70/270 (25%), Gaps = 49/270 (18%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + A++ F+ GL G +D + ++ Q Sbjct: 14 SPGVIDGYMGGNTMRAIQHFRQARGLPAEGGLDPQLIRSLIKS------QRGEIFETYTI 67 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG--------KVGLRSTVIVGRVDRQTPILHSRINR 237 + G + + + +A G + R + R Sbjct: 68 TRDDVDGPFFRVPSAMSAMAALERVGWTSPQELIADRFHMDQDLLRALNPDADFNRVGTR 127 Query: 238 IMFNPYW--VIPRSIIQKDMMALLRQDPQYLKDNNIH----------------------- 272 I + +P + + ++ + + N+ Sbjct: 128 ITIVAHGDETLPSQVARIEVRKSDNSVVAFDERGNVLASYPATVGSAQFPSPSGSMEVVA 187 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + + +W P+ PG N + ++ +H +P+P L Sbjct: 188 VAPDANYTFDPTGREW----GPDEKLIIPPGPNNPVGGIWVDLSKP-GYGIHGSPDPQLI 242 Query: 333 NNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + GCVR+ N +L + + T Sbjct: 243 GKT---ASHGCVRLTNWDAKELADAVGQGT 269 >gi|13472965|ref|NP_104532.1| hypothetical protein mll3427 [Mesorhizobium loti MAFF303099] gi|14023713|dbj|BAB50318.1| mll3427 [Mesorhizobium loti MAFF303099] Length = 505 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 77/297 (25%), Gaps = 42/297 (14%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG--LDPSGMVD 158 L LG V L+ L G + F + V+ A+ + G L + V Sbjct: 211 SLSLGVR-QDVAALQVLLDRGG--ASPGVIDGRFGSNVDKALAAYNQITGSNLKSTDTVG 267 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV---NIPAASLEAVENGKVGL 215 A+ + + Y N + E Sbjct: 268 IQ--AALAQSGGDAFASYTITAEDAAGPYVASIPEDYGQKAQLNCMCY-ISVTEALAERF 324 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 + + + I + + + + + + +++ + + Sbjct: 325 HMDENYLKSINKGLDFNRPGTIIKVANFGKLVSTPVARIVADKTKKEVYAYDASGKLVAA 384 Query: 276 EKGKE-------------VFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKI 313 V +D N PN F+Q PG + S I Sbjct: 385 YPATIGSADTPSPTGIHAVSRIALDPNYTYNPNINFKQGQNDKILTIPPGPNGPVGSVWI 444 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHI 368 +H TPEP + GCVR+ N +L + +P + + Sbjct: 445 ALDKP-TYGIHGTPEPSKIGKTE---SHGCVRLTNWDARELAKLV---SPGVTVEFV 494 >gi|240137087|ref|YP_002961556.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] gi|240007053|gb|ACS38279.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 369 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 33/264 (12%), Positives = 66/264 (25%), Gaps = 40/264 (15%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIK 184 + + A+K F GL + + + + Q + +K Sbjct: 96 SPGAIDGRDGENLRGALKAFAAAQGLPEGDRLTREIFDRLQANGKEPVVTQYTITEEDVK 155 Query: 185 KLLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +KM + P E + L ++ Sbjct: 156 GPFVEKMPPKMEEQAEVGPMRYTNTREMLAERFHMQRDLFSALNPNVPLDKAGGTLVVAA 215 Query: 243 YW----------VIPRSIIQKDMMALLRQDPQYLKDNNIHMI-------------DEKGK 279 + + + ++ ++ + +D + D K Sbjct: 216 VPPLGEGKVEGAPVAPKVTRIEVDKRTKRVRAFAEDGKLTADYPASIGSSEKPAPDGSAK 275 Query: 280 EVFVEEVDWNSPEPP--------NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 V W + P F PG + + I+ + +H TPEP Sbjct: 276 VKAVAFDPWYTYNPKYQFKGVKATKKFSIHPGPNSPVGVVWIDLSIP-SYGIHGTPEPEK 334 Query: 332 FNNVVRFETSGCVRVRN--IIDLD 353 + GC+R+ N DL Sbjct: 335 VGKTE---SHGCIRLTNWDARDLA 355 >gi|119486095|ref|ZP_01620157.1| Peptidoglycan-binding domain 1 protein [Lyngbya sp. PCC 8106] gi|119456870|gb|EAW37998.1| Peptidoglycan-binding domain 1 protein [Lyngbya sp. PCC 8106] Length = 225 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 18/174 (10%) Query: 4 YLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYH-----SIVNDRFDNFLAR 58 Y KI K FF+ + +G++ + + E + + + Sbjct: 34 YRKIYKFFSMFFLITAILLGVN-AAFALQQGNRGIKVVELQKKLHKIGYFDGQITGYYGT 92 Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP------LHLGNSSVSVQ 112 + S + T T IA Y+ + + G + + L LG+S V Sbjct: 93 LTQNAVSQF----QATNGLTVDGIAGYKTLAALGLSEAITTQTSQHTSLLKLGSSGSLVI 148 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L++ L + G D ++ +D + AV LFQM GL G+V T A+ Sbjct: 149 ELQQHLQVLGYYD--GLMTGYYDLSTQQAVILFQMDVGLKSDGIVGPLTQAAIE 200 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GN + V L+++L G D ++ + ++AV FQ +GL G+ Sbjct: 59 ALQQGNRGIKVVELQKKLHKIGYFD--GQITGYYGTLTQNAVSQFQATNGLTVDGIAGYK 116 Query: 161 TLEAMNVPVD 170 TL A+ + Sbjct: 117 TLAALGLSEA 126 >gi|167645239|ref|YP_001682902.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter sp. K31] gi|167347669|gb|ABZ70404.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter sp. K31] Length = 370 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 78/270 (28%), Gaps = 40/270 (14%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + A+ FQ + L G + + +A+ + + + Sbjct: 98 SPGVIDGQEGSNLTLALSAFQEANRLTVDGKLSPAVWDALAADSAPALTDYLITPEDVAG 157 Query: 186 L--LEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + + +PA +E + + I+ Sbjct: 158 PFTPDIPKDDYEAMAKLPALGYGTPLEALAEKFHMDEPLLQALNPGVDFSKAGTTIIVAA 217 Query: 243 YWVIPRSIIQKDMMALLRQD---------PQYLKDNNIHMIDEK--GKEVFVEEV-DW-- 288 P + + + + + Y + + + G V +W Sbjct: 218 LG--PEGLSAEGLDGKVTRIEIDNARGVLKAYADGDKLLAVYPATVGSTERPAPVGEWAV 275 Query: 289 --------NSPEPPNFIFRQD-------PGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + +P F + G N + ST I+ ++ +H TP+P L N Sbjct: 276 NTVAPRPTYTYDPTRLTFGKPTGKLTLKAGPNNPVGSTWIDLT-KDTYGIHGTPDPRLVN 334 Query: 334 NVVRFETSGCVRVRNII--DLDVWLLKDTP 361 R + GCVR+ N +L ++K Sbjct: 335 K--RA-SHGCVRLTNWDAAELGKAVVKGAK 361 >gi|220920071|ref|YP_002495372.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219944677|gb|ACL55069.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 339 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 34/296 (11%), Positives = 74/296 (25%), Gaps = 44/296 (14%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +++ L + + +E A+K F G+ SG +D + +A+ Sbjct: 47 QPDPLLVKVQVLLDRARF--SPGVIDGRSGDNLEGALKAFAEARGMKASGRLDGALWDAL 104 Query: 166 NVPVDLR-IRQLQVNLMRIKKLLEQKMGLRYVLVN--IPAASLEAVENGKVGLRSTVIVG 222 V + + +++ + A E + + Sbjct: 105 AVTSQDPVLGDYTITEKDTAGPFVKEIPAKMEEQADLKALAYTGPAEMLAERFHMSRALF 164 Query: 223 RVDRQTPILHSRINRIMFNPYWVI------------PRSIIQKDMMALLRQDPQYLKDNN 270 + + + + + Q Y D Sbjct: 165 EALNPGKAFDKPGTLVTVAAVAPLELERPAAKSLPEEPKVQRIVVDKEALQVRAYGGDGA 224 Query: 271 IHMID--EKGKEVFVEEVDWNSPEP-------------------PNFIFRQDPGKINAMA 309 + + G E + F PG N + Sbjct: 225 LLAVYPASIGSEEKPAPQGTFKVKGIVFDPDYTYDPKYGFAGVHAKHKFTIRPGPNNPVG 284 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 I+ + + +H TP+P + GC+R+ N DL ++K Sbjct: 285 LVWIDLSAE-SYGIHGTPDPEKIGKTE---SHGCIRLTNWDARDLARHVVKGATVE 336 >gi|295690611|ref|YP_003594304.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter segnis ATCC 21756] gi|295432514|gb|ADG11686.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter segnis ATCC 21756] Length = 359 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 70/251 (27%), Gaps = 30/251 (11%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP---VDLRIRQLQVNLMR 182 + + A++ FQ H + G V + L+A+ L + + + Sbjct: 89 SPGVIDGRDGGNLTLAIRAFQKAHDMTVDGEVSQALLDALLATDGGPVLVDYTISQSDVA 148 Query: 183 IKKLLEQKMGLRYVLVNIPAA-SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + + PA + VE + R + IM Sbjct: 149 GPFMPPIPKEDYEAMAREPAMNYHDVVEMLAERFHMGEDLLRDLNPGVNFNQVGATIMVT 208 Query: 242 PYWVIPRSIIQKDM-MALLRQDPQYLKDNNIHMI--------------DEKGKEVFVEEV 286 + + + ++ + + + Sbjct: 209 AAGADRLDAKVDRIEIDKALGQVRAFDESGAQLAVYPATVGSTERPAPSGEWAVRTLAPR 268 Query: 287 DWNSPEPPNFIFRQD-------PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + +P F + G N + ST I+ ++ +H TP+P L N R Sbjct: 269 PTYTYDPSRLTFGEPKAKLTIQAGPNNPVGSTWIDLT-KDTYGIHGTPDPKLVNK--RA- 324 Query: 340 TSGCVRVRNII 350 + GCVR+ N Sbjct: 325 SHGCVRLTNWD 335 >gi|319781350|ref|YP_004140826.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167238|gb|ADV10776.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 501 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 75/304 (24%), Gaps = 40/304 (13%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-- 150 G L LG V L+ L G + F + V+ A+ + G Sbjct: 199 GDKTTVAPALSLGAR-QDVAALQVLLDRGG--ASPGVIDGRFGSNVDKALAAYNQITGAN 255 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA--SLEAV 208 L + V + A+ + + Y Sbjct: 256 LRSTDAV--AIQAALAQSGGDAFANYTITAEDAAGPYVASIPEDYSQKAQLDRMGYTSVT 313 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E + + I + + + + + + +++ Sbjct: 314 EALAERFHMDENYLKALNPEVDFNRPGTIIKVANFGRLVSTPVARIVADKDKKEVFAYDA 373 Query: 269 NNIHMIDEKG-------------KEVFVEEVDWNSPEPPNFIFRQ---------DPGKIN 306 + V +D N P+ F+Q PG Sbjct: 374 GGKLVAAYPATIGSSDTPSPSGIHTVSRVALDPNYTYNPSINFKQGQNDKVLTIPPGPNG 433 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWS 364 + S I +H TP+P + GCVR+ N +L + +P + Sbjct: 434 PVGSVWIALDKP-TYGIHGTPDPSKIGKTE---SHGCVRLTNWDARELAKLV---SPGVT 486 Query: 365 RYHI 368 + Sbjct: 487 VEFV 490 >gi|329890128|ref|ZP_08268471.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328845429|gb|EGF94993.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 346 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 39/311 (12%), Positives = 79/311 (25%), Gaps = 48/311 (15%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +P ++ Q L +R + A+ F+ GL G Sbjct: 59 PVEGQPARPDAATARAQILLDRANF-----SPGVIDGLGGDNTRQAIAAFEKAAGLPQDG 113 Query: 156 MVDSSTLEAMNVPVDLR-IRQLQVNLMRIKKLLEQKMGLRYVLVNI--PAASLEAVENGK 212 ++D+ + D R + + + ++ + +E Sbjct: 114 VLDAEVFRRLTAGDDGRVLTDYTIAAADLAGPFIGQVPADLTEMAKLQTVGYATPLEMLA 173 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM--ALLRQDPQYLKDNN 270 T + + I+ + ++ R Y + Sbjct: 174 EKFHMTEGLLQALNPGVDFGKAGQTIVVAAVAQTELTDDVAHIVVDKAERSVRVYDAADK 233 Query: 271 IHMI-------------DEKGKEVFVEEVDWNSPEP-------PNFIFRQDPGKINAMAS 310 + + V V + +P + PG N + S Sbjct: 234 LLAFYPATIGSSARPAPSGELSVVGVAPEPNYTYDPDRVSYDRGDRKVIVPPGPNNPVGS 293 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 I+ R+ +H TP+P +SGCVR+ N W + Sbjct: 294 VWIDLS-RDTYGIHGTPDPSKVGKT---FSSGCVRLTN--------------WDAEQLAS 335 Query: 371 VVKTRKTTPVK 381 VK + Sbjct: 336 KVKPGVRVTFR 346 >gi|329118082|ref|ZP_08246794.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria bacilliformis ATCC BAA-1200] gi|327465742|gb|EGF12015.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria bacilliformis ATCC BAA-1200] Length = 349 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 68/237 (28%), Gaps = 73/237 (30%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 +V++NIP L +GK+ V VG+ QT I +I FNP W IP+SI Sbjct: 55 EGTHVVINIPQQRLFLYSDGKLSKIYPVAVGKAMTQTNIGSHKIGAKAFNPTWHIPKSIQ 114 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 ++ N I PG N + Sbjct: 115 KE-------------LKNGIT--------------------------SVPPGPKNPLGPV 135 Query: 312 KIEFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 + +H T P + GCVR+++ L + Sbjct: 136 FVRLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------QFAK 178 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSI-----IQFRDDIYGLDNVHVGIIPL 422 V T P +Y A +D FR D Y N+ + Sbjct: 179 TVSTGS----------PADVIYQMAALNEDGAGNLWLAAFR-DPYNKKNLDTAALRK 224 >gi|241205592|ref|YP_002976688.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859482|gb|ACS57149.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 466 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 78/301 (25%), Gaps = 36/301 (11%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ P+ L S + L+ L +G + + V + + G Sbjct: 176 PDEPVITLK-NKSKPEIVALQVFLDRAG--ISPGVIDGHMGSNVTKGIYAYDQMTGSKLD 232 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PA-ASLEAVENGK 212 + LE + + L + + ++ Y + P+ A E Sbjct: 233 PNDTDAILEELRMTGGLPVVSYTITPADAAGPFVAEIPEDYSHKALLPSLAYTSTTEMLA 292 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNI 271 + I + + + R+ Y N+ Sbjct: 293 ERFHMDEAFLKEMNPGADFTVAGTVIKVVNPGEPKSGAVARIIADKGRKQVFAYDGAGNL 352 Query: 272 HMID------------EKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMAS 310 V ++ P F+Q PG + + Sbjct: 353 LAAYPASIGSTDTPSPSGTVTVERVALNPGYTYNPKINFQQGANDKILNIPPGPNGPVGT 412 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHI 368 + +H TPEP R ++ GC+R+ N +L + P + + Sbjct: 413 VWMALSKP-TYGIHGTPEPSKIG---RTQSHGCIRLTNWDATELAKMV---KPGVTVEFV 465 Query: 369 E 369 + Sbjct: 466 D 466 >gi|209550209|ref|YP_002282126.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535965|gb|ACI55900.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 463 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 33/287 (11%), Positives = 70/287 (24%), Gaps = 35/287 (12%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L+ L +G + + V +V + G + LE + + Sbjct: 186 PEIVALQVFLDRAG--ISPGVIDGHMGSNVTKSVYAYDQMTGSKLDPNDTDAILEELRMN 243 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PA-ASLEAVENGKVGLRSTVIVGRVDR 226 L + + ++ Y + P+ A E + Sbjct: 244 GGLPVVSYTITPADAAGPYVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLKEMN 303 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK------- 279 I + + + R+ + Sbjct: 304 PGADFSVAGTVIKVVNPGEPKSGEVARIIADKGRKQVFAYDSAGNPIAAYPASIGSTDTP 363 Query: 280 ------EVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMH 324 V + P F+Q PG + + + +H Sbjct: 364 SPSGIVTVERVAFNPGYTYNPKINFQQGANDKILNIPPGPNGPVGTVWMALSKP-TYGIH 422 Query: 325 DTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIE 369 TPEP R ++ GC+R+ N +L + P + ++ Sbjct: 423 GTPEPSKIG---RTQSHGCIRLTNWDATELAKMV---KPGVTVEFVD 463 >gi|312890411|ref|ZP_07749948.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311297181|gb|EFQ74313.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 91 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 40/87 (45%) Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 +R + GCVR+ +D L D+ + V + T + L +VPV+ Y + Sbjct: 1 MRAVSHGCVRLEKPLDFAHALFGDSAKYKTIEKCIVEDNPEPTSLSLNNKVPVYITYFTC 60 Query: 396 WSPKDSIIQFRDDIYGLDNVHVGIIPL 422 WS +QFR DIYGLD V + Sbjct: 61 WSDDSGTLQFRKDIYGLDIVLYAHLQK 87 >gi|325293497|ref|YP_004279361.1| hypothetical protein AGROH133_07496 [Agrobacterium sp. H13-3] gi|325061350|gb|ADY65041.1| hypothetical protein AGROH133_07496 [Agrobacterium sp. H13-3] Length = 463 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 64/273 (23%), Gaps = 32/273 (11%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + L+ L G + V A+ +Q G LE + Sbjct: 187 EIVALQTFLDREG--ISPGVIDGKMGDNVNKAIAAWQDMTGEKLDPNNSEDILERLRASG 244 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVIVGRVDRQ 227 + I + + Y + + E + Sbjct: 245 GMPIVDYTITAADAAGPYVASIPDDYAEKSQLPALSFTSTSEALAERFHMDETYLKELNP 304 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMAL-LRQDPQYLKDNNIHMID----------- 275 I + + + + ++Q Y +D + Sbjct: 305 GIDFSVPGTIIKVVNPGEPKKGQVARIVAHKGIKQVFAYGEDGALIAAYPATIGSTDTPS 364 Query: 276 -EKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHD 325 V ++ P FRQ PG + + I +H Sbjct: 365 PSGTHTVERVALNPGYTYNPKINFRQGQNDKILQIPPGPNGPVGTVWIALSKP-TYGIHG 423 Query: 326 TPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 TPEP + GC+R+ N +L + Sbjct: 424 TPEPSKIGKTN---SHGCIRLTNWDATELAKMV 453 >gi|190892619|ref|YP_001979161.1| hypothetical protein RHECIAT_CH0003034 [Rhizobium etli CIAT 652] gi|190697898|gb|ACE91983.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 466 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 34/287 (11%), Positives = 70/287 (24%), Gaps = 35/287 (12%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L+ L +G + + V + + G + LE + + Sbjct: 189 PEIVALQVFLDRAG--ISPGVIDGHMGSNVTKGIYAYDQMTGSKLDPNDTDAILEELRMN 246 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PA-ASLEAVENGKVGLRSTVIVGRVDR 226 L + + + Y + P+ A E + Sbjct: 247 GGLPVVSYTITPADAAGPFVAAIPEDYSHKALLPSLAYTSITEMLAERFHMDEAFLKEMN 306 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNIHMID---------- 275 I + + + R+ Y N+ Sbjct: 307 PGADFSVPGTVIKVVNPGETKSGEVARIIADKARKQVFAYDGAGNLLAAYPASIGSTDTP 366 Query: 276 --EKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMH 324 V + P F+Q PG + + + +H Sbjct: 367 SPSGTVTVERVAFNPGYTYNPKINFQQGANDKILNIPPGPNGPVGTVWMALSKP-TYGIH 425 Query: 325 DTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIE 369 TPEP R ++ GC+R+ N +L + P + ++ Sbjct: 426 GTPEPSKIG---RTQSHGCIRLTNWDATELAKMV---KPGVTVEFVD 466 >gi|86358485|ref|YP_470377.1| hypothetical protein RHE_CH02882 [Rhizobium etli CFN 42] gi|86282587|gb|ABC91650.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 466 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 34/287 (11%), Positives = 71/287 (24%), Gaps = 35/287 (12%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L+ L +G + + V + + G + LE + + Sbjct: 189 PEIVALQVFLDRAG--ISPGVIDGHMGSNVTKGIYAYDQMTGSKLDPNDTDAILEELRMN 246 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PA-ASLEAVENGKVGLRSTVIVGRVDR 226 L + + ++ Y + P+ A E + Sbjct: 247 GGLPVVSYTITPADAAGPFVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLKEMN 306 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNIHMID---------- 275 I + + + R+ Y N+ Sbjct: 307 PGADFSVPGTVIKVVNPGEAKTGEVARIIADKGRKQVFAYDGAGNLIAAYPASIGSTDTP 366 Query: 276 --EKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMH 324 V + P F+Q PG + + + +H Sbjct: 367 SPSGTVTVERVAFNPGYTYNPKINFQQGTNDKILNIPPGPNGPVGTVWMALSKP-TYGIH 425 Query: 325 DTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIE 369 TPEP R ++ GC+R+ N +L + P + ++ Sbjct: 426 GTPEPSKIG---RTQSHGCIRLTNWDATELAKMV---KPGVTVEFVD 466 >gi|304394124|ref|ZP_07376047.1| ErfK/YbiS/YcfS/YnhG [Ahrensia sp. R2A130] gi|303293564|gb|EFL87941.1| ErfK/YbiS/YcfS/YnhG [Ahrensia sp. R2A130] Length = 477 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 41/364 (11%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 38 EIINESYHSIVNDRFDNFLARVDMGIDSDIPI--------ISKETIAQTEK-------AI 82 + I +D F D P +A+ + Sbjct: 116 DTIRRPRRDN-DDGFYLDERDGSRDARRDAPPNDWRRDDGYPDSELARPTAPSPERDIEV 174 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 A ++ + + + + L+ L G + + + V A+ Sbjct: 175 ARLPEVEQQPVDRAISPTTSKPRFGAAQMAELQVVLDREGF--SPGVIDGQWGSNVAKAM 232 Query: 143 KLFQMRHG-LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 ++ G L + + T A+ + + + ++ + Y Sbjct: 233 DAYREAKGSLPIAKTIGLQT--ALAQTGGDALTSYTITRKDVAGPFVSRIPIDYARKAEL 290 Query: 202 A--ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 A + +E + + I + + + Sbjct: 291 QSLAYTDVIEMLAERFHMSEGFLKRLNPGRDFRRPGTTITVVKPGAKKKRPVHYIVADKA 350 Query: 260 RQDPQYLKDNNIHMIDE-------------KGKEVFVEEVDWNSPEPPNFIFRQ------ 300 R+ + N ++ V +D P F+Q Sbjct: 351 RKQVRGYDRNGKLIVAYPATIGSASTPSPTGKHSVARIALDPEYTYNPKKNFQQGTNDKI 410 Query: 301 ---DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVW 355 PG + S I +H TP+P ++GC+R+ N +L Sbjct: 411 LRIPPGPNGPVGSVWIALSKP-TYGIHGTPDPSKIGKTE---SNGCIRLTNWDARELAAN 466 Query: 356 LLKD 359 + K Sbjct: 467 VRKG 470 >gi|307308272|ref|ZP_07587981.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307319739|ref|ZP_07599164.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306894670|gb|EFN25431.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306901270|gb|EFN31876.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 468 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 85/345 (24%), Gaps = 51/345 (14%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLI 119 + + +P +S A + Y D L++ P P + G S + L+ L Sbjct: 149 REDLPNSLPSLSDREEAAYD---PQYDDPLAQ---PMPPAMTVT-GKSRAEIAALQVFLD 201 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G + + V A++ +Q G LE + L I + Sbjct: 202 REGF--SPGVIDGKMGSNVTKAIEAWQQATGETLDPNNTEDILERLRFNGGLPITTYTIT 259 Query: 180 LMRIKKLLEQKMGLRYV-LVNIP-AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 + Y +P + E R Sbjct: 260 AADAAGPFVASIPEDYAHKAQLPHLSFTSVTEMLGEKFHMDEAYLRELNPGVDFSIPGTT 319 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE-------------VFVE 284 I + + + + R+ + + V Sbjct: 320 IKVVNPGPNKKGKVARIVADKARKQVLAYDEAGKLIAAYPSTIGSSDTPSPSGTVHVERI 379 Query: 285 EVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 D P F+Q PG + + I +H TPEP Sbjct: 380 AFDPGYTYNPKINFQQGANDRILQLQPGPNGPVGTVWIALSKP-TYGIHGTPEPSKIGKT 438 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 + GCVR+ N W + ++V T T Sbjct: 439 Q---SHGCVRLTN--------------WDATELGKMVSTGVTVEF 466 >gi|15965961|ref|NP_386314.1| hypothetical protein SMc01575 [Sinorhizobium meliloti 1021] gi|15075231|emb|CAC46787.1| Hypothetical protein SMc01575 [Sinorhizobium meliloti 1021] Length = 454 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 49/345 (14%), Positives = 85/345 (24%), Gaps = 51/345 (14%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLI 119 + + +P +S A + Y D L++ P P + G S + L+ L Sbjct: 135 REDLPNSLPSLSDREEAAYD---PQYDDPLAQ---PMPPAMTVT-GKSRAEIAALQVFLD 187 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G + + V A++ +Q G LE + L I + Sbjct: 188 REGF--SPGVIDGKMGSNVTKAIEAWQQATGETLDPNNTEDILERLRFNGGLPITTYTIT 245 Query: 180 LMRIKKLLEQKMGLRYV-LVNIP-AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 + Y +P + E R Sbjct: 246 AADAAGPFVASIPEDYAHKAQLPHLSFTSVTEMLGEKFHMDEAYLRELNPGVDFSIPGTT 305 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE-------------VFVE 284 I + + + + R+ + + V Sbjct: 306 IKVVNPGPNKKGKVARIVADKARKQVLAYDEAGKLIAAYPSTIGSSDTPSPSGTVHVERI 365 Query: 285 EVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 D P F+Q PG + + I +H TPEP Sbjct: 366 AFDPGYTYNPKINFQQGANDRILQLQPGPNGPVGTVWIALSKP-TYGIHGTPEPSKIGKT 424 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 + GCVR+ N W + ++V T T Sbjct: 425 Q---SHGCVRLTN--------------WDATELGKMVSTGVTVEF 452 >gi|218661191|ref|ZP_03517121.1| hypothetical protein RetlI_17403 [Rhizobium etli IE4771] Length = 276 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 73/276 (26%), Gaps = 32/276 (11%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + V+ AV F+ + L G D + + + V+ Sbjct: 9 SSPGVIDGLPGENVDKAVAGFEAMNKLPVDGRPDPDLVSRLEDN-APIVETYVVSPEDAA 67 Query: 185 KLLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 L++ + + E + + + + + +P Sbjct: 68 DLVDSIPEDYGEKAKMQSLGYTSVAEKLSERFHMDLDLLKALNPGSQFAAGDTVWVVSPG 127 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEP-------- 293 + + + Q Y +D + + G + + + Sbjct: 128 PPREGRVKRIEADKKTGQVVAYGEDGYLLAVYPATIGSKDNPSPSGKHKVKGVARMPVYR 187 Query: 294 --PNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 P F+Q G + + I+ +H TPEP L + V + G Sbjct: 188 YDPKRNFKQGNNNKVLTIPKGPNGPVGTVWIDLTEP-TYGIHGTPEPKLIDKVG---SHG 243 Query: 343 CVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 CVR+ N +L + P + K Sbjct: 244 CVRLTNWDAEELAGMV---KPGVLVDFVNRSPAAPK 276 >gi|157374221|ref|YP_001472821.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sediminis HAW-EB3] gi|157316595|gb|ABV35693.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sediminis HAW-EB3] Length = 333 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 42/187 (22%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + +++N+P L NGK V +GRV R+TP + ++I + NP W P Sbjct: 88 DVPRKGIVINLPELRLYYFPTNGKEVHVFPVGIGRVGRETPEMVTKIKSRIPNPSWTPPA 147 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI + + + G N + Sbjct: 148 SIRRDHL----------------------------------AERGEVLPRVVPAGPDNPL 173 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRY 366 ++ + +Y +H T + F +R +SGCVR+ N D+ WL S Sbjct: 174 GKYAMQLSHGDGSYLIHGTNKD--FGVGMR-VSSGCVRL-NPDDI-EWLFHQAKYGDSVR 228 Query: 367 HIEEVVK 373 I E VK Sbjct: 229 VINETVK 235 >gi|163751582|ref|ZP_02158804.1| hypothetical protein KT99_01257 [Shewanella benthica KT99] gi|161328590|gb|EDP99743.1| hypothetical protein KT99_01257 [Shewanella benthica KT99] Length = 320 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 93/266 (34%), Gaps = 66/266 (24%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 + L+E L+ GD FQ G+++ L N VD Sbjct: 52 IGELQEHLVQKGDY--------------------FQTISKQYNVGILE---LMESNPGVD 88 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTP 229 + L+ ++L + + +++N+P L +NGK V +GR+ R+TP Sbjct: 89 PFLPTPGSTLIIPTQMLLPDVPRKGIVLNLPELRLYYFPKNGKQVHVFPVGIGRIGRETP 148 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + ++I + NP W P SI ++ + Sbjct: 149 EMVTKIKARIPNPSWTPPASIRKEHL---------------------------------- 174 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + ++ + +Y +H T + F +R +SGCVR+ N Sbjct: 175 -ERGEVLPAIVPAGPDNPLGNYAMQLSYGDGSYLIHGTNKD--FGVGMR-VSSGCVRL-N 229 Query: 349 IIDLDVWLLKDTP-TWSRYHIEEVVK 373 D+ WL T I + VK Sbjct: 230 PDDI-EWLFNQTQYGDPVRVINQTVK 254 >gi|294668409|ref|ZP_06733512.1| hypothetical protein NEIELOOT_00327 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309727|gb|EFE50970.1| hypothetical protein NEIELOOT_00327 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 317 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 67/234 (28%), Gaps = 71/234 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +V++NIP L +GK+ V VG+ QT + +I FNP W IP+SI ++ Sbjct: 32 HHVVINIPQQRLFLYTDGKLAKIYPVAVGKAMTQTNLGSHKIGAKAFNPIWHIPKSIQKE 91 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 N + PG N + + Sbjct: 92 ---------------------------------------LNNGVTSIPPGPKNPLGPVFV 112 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 113 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------QFAKTI 155 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGIIPL 422 T P +Y A D + D Y N++ + Sbjct: 156 TTGS----------PADVIYQMAALNVDGAGNLWLAAYRDPYNKKNLNTAALRK 199 >gi|167630552|ref|YP_001681051.1| erfk/ybis/ycfs/ynhg [Heliobacterium modesticaldum Ice1] gi|167593292|gb|ABZ85040.1| erfk/ybis/ycfs/ynhg [Heliobacterium modesticaldum Ice1] Length = 307 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 77/267 (28%), Gaps = 80/267 (29%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL V L+ERL G L +D AV Q + GL G V Sbjct: 31 AAPPLK----GSDVAELQERLKELGYYS--GPLDGLYDRKTVDAVTQMQRQKGLKADGCV 84 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 SST A++ PV + +K +G+ ++V + +L + +G V Sbjct: 85 SSSTWLALSPPV------MTNQPAEPRKPPSAPVGVITLVVELDKNTLSVLIDGNVYKTY 138 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V G+ D +P+ RI +W D Sbjct: 139 PVATGKRDTPSPVGEWRIVDK--QKHWG-----------------------------DGF 167 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVV 336 G V W Y +H T +P Sbjct: 168 GSRWLGFNVPW-------------------------------GIYGIHGTNKPWSVGKS- 195 Query: 337 RFETSGCVRVRN--IIDLDVWLLKDTP 361 + GC R+ N + +L W+ T Sbjct: 196 --VSGGCFRMHNRDVEELFEWIPLRTV 220 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +L +G + V R++ RL G F A +E AV+ FQ + + +G Sbjct: 230 KLSKSAYKIGMTGQEVARIQFRLQEKGF--SPGLADGRFGAEMEKAVRNFQKQQQISETG 287 Query: 156 MVDSSTLEAMNVPVDLR 172 ++D +TL ++ V+ + Sbjct: 288 VIDEATLRLLDFQVEKK 304 >gi|90420186|ref|ZP_01228094.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Aurantimonas manganoxydans SI85-9A1] gi|90335520|gb|EAS49270.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Aurantimonas manganoxydans SI85-9A1] Length = 447 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 80/299 (26%), Gaps = 38/299 (12%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + I P + N+ + L+ L +G + + V AV + Sbjct: 149 RTITESDPAPPVEAPKGK--NAEAEIAALQILLDRAGM--SPGVIDGRMGSNVNKAVAAY 204 Query: 146 QMRHG--LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV-NIPA 202 + + G L + E ++ I ++ + + Y +P Sbjct: 205 EEKFGRSLPTGDA--KALAEELDATGGPAITTYEITAEDVAGPYVAAIPSDYGEKAQLPE 262 Query: 203 ASL-EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR- 260 S E R + + RI + + K + R Sbjct: 263 MSFERVSERLAERFHMDEEFLRKINPGADFNRQGTRIKVAATGENVKGEVAKIIADKGRE 322 Query: 261 QDPQYLKDNNIHMIDEKG------------KEVFVEEVDWNSPEPPNFIFRQ-------- 300 Q Y D ++ +V D N P F+Q Sbjct: 323 QVRAYAADGSLIAAYPSTIGSSDTPSPSGVVQVNRIAFDPNYTYNPKVNFKQGSNDKVLT 382 Query: 301 -DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 PG + + I +H TPEP + GCVR+ N +L + Sbjct: 383 IPPGPNGPVGTIWIALSKP-TYGIHGTPEPSKIGKTN---SHGCVRLTNWDATELAKMV 437 >gi|332968887|gb|EGK07934.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella kingae ATCC 23330] Length = 305 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 71/240 (29%), Gaps = 71/240 (29%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +YV++N+P L NG++ V VG+ QT + RI FNP W IP Sbjct: 30 APDAEGQYVVINVPQQRLFLYNNGRLQKVYPVAVGKAMTQTNLGEHRIGAKAFNPTWHIP 89 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI ++ + + PG N Sbjct: 90 LSIQRER---------------------------------------GDGVKTVPPGPSNP 110 Query: 308 MASTKIEFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + +H T P +V + GCVR+++ L Sbjct: 111 LGPVFVRMGDPKLGLGIHGTSNP---GSVPGVASHGCVRMKSPDAL-------------- 153 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGIIPL 422 ++T T V Y A +D + D Y +N+ V + Sbjct: 154 EFARTIRTGSTALVS----------YEMAALNQDGAGNLWLAAFKDPYRKNNLRVNALKQ 203 >gi|218673617|ref|ZP_03523286.1| hypothetical protein RetlG_19593 [Rhizobium etli GR56] Length = 466 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 77/301 (25%), Gaps = 36/301 (11%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ P+ L S + L+ L +G + + V ++ + G Sbjct: 176 PDEPVITLK-NKSKPEIVALQVFLDRAG--ISPGVIDGHMGSNVTKSIYAYDQMTGSKLD 232 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PA-ASLEAVENGK 212 + LE + + L + + + Y + P+ A E Sbjct: 233 PNNTDAILEELRMNGGLPVVSYTITPADAAGPFVAAIPEDYSHKALLPSLAFTSTTEMLA 292 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNI 271 + I + + + R+ Y N+ Sbjct: 293 ERFHMDEAFLKEMNPGADFSVPGTVIKVVNPGEPKSGEVARIIADKGRKQVFAYDGAGNL 352 Query: 272 HMID------------EKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMAS 310 V + P F+Q PG + + Sbjct: 353 IAAYPASIGSTDTPSPSGTVTVERVAFNPGYTYNPKINFQQGANDKILNIPPGPNGPVGT 412 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHI 368 + +H TPEP R ++ GC+R+ N +L + P + + Sbjct: 413 VWMALSKP-TYGIHGTPEPSKIG---RTQSHGCIRLTNWDATELAKMV---KPGVTVEFV 465 Query: 369 E 369 + Sbjct: 466 D 466 >gi|146343733|ref|YP_001208781.1| hypothetical protein BRADO6980 [Bradyrhizobium sp. ORS278] gi|146196539|emb|CAL80566.1| conserved hypothetical protein; putative signal peptide; Putative peptidoglycan-binding domain-containing protein [Bradyrhizobium sp. ORS278] Length = 324 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 70/252 (27%), Gaps = 31/252 (12%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + F A+ F GLD + +A+ I ++ +K Sbjct: 60 SPGEIDGHFGDNARKALAAFASARGLDSGSKLTQQLWDALRQDQAPAIVTYKITRDDVKG 119 Query: 186 LLEQKMGLRYV-LVNIP-AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI----M 239 + + + ++P E + + I + Sbjct: 120 PFLKTLPRHMEDMKDLPRLGYTSPREALAEKFHMSESLLAALNPKSKFDRAGEEIAVANV 179 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM-----IDEKGK-------EVFVEEVD 287 P +P I + D+ + KD N + K +V + + Sbjct: 180 MKPNETVP-EITRLDIDKQAESVQAFDKDGNRVAMLPATVGSDDKPTPVGSFKVDSIDAN 238 Query: 288 WNSPEPPNFIFR---------QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 N P++ F+ PG N + S I N +H T EP Sbjct: 239 PNYRYNPDYKFKGVKARKPFDIKPGPNNPVGSYWIGLSIGNGYGIHGTAEPAKVGKTE-- 296 Query: 339 ETSGCVRVRNII 350 + GCVR+ N Sbjct: 297 -SHGCVRLTNWD 307 >gi|296132569|ref|YP_003639816.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola sp. JR] gi|296031147|gb|ADG81915.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola potens JR] Length = 279 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 66/257 (25%), Gaps = 83/257 (32%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S V+ ++ERL+ G + FD +AV FQ GL G+V T A+ Sbjct: 16 SGPDVKAVQERLVDLGYYK--GRVDGVFDPATANAVVAFQKSRGLKADGVVGPDTWSALG 73 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 + + + ++ L ++G V VG+ Sbjct: 74 TDMAVSAA---------------PGQGYRIFIDTERFRLSLFKDGVHQAAWPVAVGKPST 118 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 TPI I + NP G V Sbjct: 119 PTPIGDWVITEKIMNPGGP-------------------------------FGARWMRISV 147 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 W +H T P + GC+R+ Sbjct: 148 PWG------------------------------GYGIHGTDNPASIGT---AASHGCIRM 174 Query: 347 --RNIIDLDVWLLKDTP 361 ++I L + TP Sbjct: 175 YNEDVIKLYDIVGIGTP 191 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 8/96 (8%) Query: 84 FYQDILSRGGWPELPIRP-----LHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 DI+ G ++ R L +G + ++++RL G L F Sbjct: 181 KLYDIVGIGTPVKITGRVFTGRLLQIGIPPGSDIVQVQQRLQTLGYYKEE--LDGQFGPT 238 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 +AV FQ GL P G+V T E + D + Sbjct: 239 TRNAVIAFQRVRGLVPDGIVGPRTYEELEKAYDQAL 274 >gi|146282381|ref|YP_001172534.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas stutzeri A1501] gi|145570586|gb|ABP79692.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas stutzeri A1501] Length = 451 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 71/248 (28%), Gaps = 69/248 (27%) Query: 173 IRQLQVNLMRIKKLLEQ-------------KMGLRYVLVNIPAASLEAVENGK-VGLRST 218 + + N L + +++NI + GK V Sbjct: 194 LELVAANPGVDPWLPGEGTDIILPTRFILPPGPREGIVINIAEYRMYYYPEGKNVVHTFP 253 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + +GR +P+ +RI + NP W P+SI ++ Sbjct: 254 LGIGREGWGSPVGTARITAMTSNPAWYPPKSIREE------------------------- 288 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 ++ + PG N + K+ +H + + F +R Sbjct: 289 ----------HAADGDPLPTVVPPGPDNPLGPYKMSLSLP-GYLIHGSNKK--FGIGMR- 334 Query: 339 ETSGCVRV--RNIIDLDVWLLKDTP----------TWSRYHI----EEVVKTRKTTPVKL 382 + GC R+ N+++L + TP S + ++ + L Sbjct: 335 VSHGCFRMLNHNVLELAKMVKVGTPVRIVDEPYKFGVSEGKVYLEAHAPLEDGDQKTLTL 394 Query: 383 ATEVPVHF 390 + V Sbjct: 395 MDKHAVVI 402 >gi|294139659|ref|YP_003555637.1| LysM domain-containing protein [Shewanella violacea DSS12] gi|293326128|dbj|BAJ00859.1| LysM domain protein [Shewanella violacea DSS12] Length = 307 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 95/269 (35%), Gaps = 66/269 (24%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S + L+E L++ GD FQ G+++ L N Sbjct: 29 SSLIGELQEHLVLKGDY--------------------FQTISKQYNVGILE---LMESNP 65 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 VD + L+ ++L + + +++N+P L +NGK V +GRV R Sbjct: 66 GVDPFLPTPGTKLIIPTQMLLPDVPRKGIVLNLPELRLYYFSKNGKQVHVFPVGIGRVGR 125 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP + ++I + NP W P SI ++ + Sbjct: 126 ETPEMVTKIKARIPNPSWTPPASIRKEHL------------------------------- 154 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + ++ + +Y +H T + F +R +SGCVR Sbjct: 155 ----ERGEILPPVVAAGPDNPLGNYAMQLSYGDGSYLIHGTNKD--FGIGMR-VSSGCVR 207 Query: 346 VRNIIDLDVWLLKDTP-TWSRYHIEEVVK 373 + N D+ WL T I + VK Sbjct: 208 L-NPDDI-EWLFNQTKYGDPVRVINQTVK 234 >gi|170725525|ref|YP_001759551.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella woodyi ATCC 51908] gi|169810872|gb|ACA85456.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella woodyi ATCC 51908] Length = 301 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 42/191 (21%) Query: 190 KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +++N+P L +NGK V +GR+ R+TP + ++I + NP W P Sbjct: 88 DVPRTGIVINLPELRLYYFPKNGKEVHVFPVGIGRIGRETPEMVTKIKSRIPNPSWTPPA 147 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI + + G N + Sbjct: 148 SIRKDHL----------------------------------EERGEVLPRIVPAGPDNPL 173 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRY 366 ++ + +Y +H T + F +R +SGC+R+ N D+ WL S Sbjct: 174 GKYAMQLSYGDGSYLIHGTNKD--FGIGMR-VSSGCIRL-NPDDI-EWLFHQAKYGDSVR 228 Query: 367 HIEEVVKTRKT 377 I + VKT Sbjct: 229 IINQTVKTSSE 239 >gi|262361435|gb|ACY58156.1| hypothetical protein YPD4_1248 [Yersinia pestis D106004] Length = 412 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 2/100 (2%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 315 TDNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGH 374 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 ++VNIP SL ++G L S VIVGR R+TP Sbjct: 375 V--DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTP 412 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL G+ S + + +++N + + S P + Sbjct: 141 YLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQ--Y 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + ++A+ + R WP++P P L G S + LRE L +G L P+ + Sbjct: 199 DKMQQALKLM--LADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPV 252 >gi|159185065|ref|NP_355095.2| hypothetical protein Atu2133 [Agrobacterium tumefaciens str. C58] gi|159140339|gb|AAK87880.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 460 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 65/273 (23%), Gaps = 32/273 (11%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + L+ L G + V A+ +Q G LE + Sbjct: 184 EIVALQTFLDREG--ISPGVIDGKMGDNVNKAIAAWQDMTGDKLDPNNSDDILERLRASG 241 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVIVGRVDRQ 227 + I + + Y + + E + Sbjct: 242 GMPIVDYTITAADAAGPYVASIPDDYAAKSQLPALSFTSTSEALAERFHMDENYLKELNP 301 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMAL-LRQDPQYLKDNNIHMID----------- 275 I + + + + ++Q Y +D N+ Sbjct: 302 GIDFTVPGTIIKVVNPGEAKKGQVARIVAHKGIKQVFAYGQDGNLIAAYPATIGSTDTPS 361 Query: 276 -EKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHD 325 V ++ P F+Q PG + + I +H Sbjct: 362 PSGTHTVERIALNPGYTYNPKINFKQGQNDKILQIPPGPNGPVGTVWIALSKP-TYGIHG 420 Query: 326 TPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 TPEP + GC+R+ N +L + Sbjct: 421 TPEPSKIGKTN---SHGCIRLTNWDATELAKMV 450 >gi|121534863|ref|ZP_01666682.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] gi|121306462|gb|EAX47385.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] Length = 211 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 71/264 (26%), Gaps = 74/264 (28%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V L+ L I G + + FDA +A+ FQ GL +G + T Sbjct: 20 GASGPLVAELQHILAIRGHY--NGEIHGRFDAETRAALARFQEEQGLPVTGELTPLTFCR 77 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + + + R K + ++L+ L E+ Sbjct: 78 LQAAEKISVDPAPQPPARGKS----SLSRPHILITKAKRQLTLFESN------------- 120 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 TP W + GK Sbjct: 121 ---TPF-----------RQWPV-----------------------------AIGKPHTPT 137 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 V + + + + + ++ +H T P L ++GC+ Sbjct: 138 PVGNFAIAAKIM------NPGGVLGTRWMGL-NHDSYGIHGTNAPWLIGQ---MVSNGCI 187 Query: 345 RVRNI--IDLDVWLLKDTPTWSRY 366 R+ N +L + TP + R Sbjct: 188 RMHNPHAEELFALIFVGTPVYIRD 211 >gi|327480636|gb|AEA83946.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas stutzeri DSM 4166] Length = 321 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 71/248 (28%), Gaps = 69/248 (27%) Query: 173 IRQLQVNLMRIKKLLEQ-------------KMGLRYVLVNIPAASLEAVENGK-VGLRST 218 + + N L + +++NI + GK V Sbjct: 64 LELVAANPGVDPWLPGEGTDIILPTRFILPPGPREGIVINIAEYRMYYYPEGKNVVHTFP 123 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + +GR +P+ +RI + NP W P+SI ++ Sbjct: 124 LGIGREGWGSPVGTARITAMTSNPAWYPPKSIREE------------------------- 158 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 ++ + PG N + K+ +H + + F +R Sbjct: 159 ----------HAADGDPLPTVVPPGPDNPLGPYKMSLSLP-GYLIHGSNKK--FGIGMR- 204 Query: 339 ETSGCVRV--RNIIDLDVWLLKDTP----------TWSRYHI----EEVVKTRKTTPVKL 382 + GC R+ N+++L + TP S + ++ + L Sbjct: 205 VSHGCFRMLNHNVLELAKMVKVGTPVRIVDEPYKFGVSEGKVYLEAHAPLEDGDQKTLTL 264 Query: 383 ATEVPVHF 390 + V Sbjct: 265 MDKHAVVI 272 >gi|227822683|ref|YP_002826655.1| putative ErfK/YbiS/YhnG family protein [Sinorhizobium fredii NGR234] gi|227341684|gb|ACP25902.1| putative ErfK/YbiS/YhnG family protein [Sinorhizobium fredii NGR234] Length = 479 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 43/319 (13%), Positives = 70/319 (21%), Gaps = 47/319 (14%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P + G S + L+ L G + + V A++ +Q G Sbjct: 174 PMPPAIEMK-GKSRAEITALQVFLDREGF--SPGVIDGKMGSNVTKALEAWQQATGEKLD 230 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV---ENG 211 LE + L I + + Y L E Sbjct: 231 PNNTEDILERLRFNGGLPITTYTITAADAAGPYVAAIPEDYAHKAQ-LPHLSFTSTTEML 289 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 R I + + + R+ D Sbjct: 290 GEKFHMDEGYLRELNPGVDFSIPGTTIKVINPGPNKSGKVARIIADKGRKQVLAYDDAGK 349 Query: 272 HMI-------------DEKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMA 309 + V D P F+Q PG + Sbjct: 350 LIAAYPATIGSADTPSPSGTVTVERIAFDPGYTYNPKINFQQGANDRILTLQPGPNGPVG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + I +H TP+P + GCVR+ N W + Sbjct: 410 TVWIALSRP-TYGIHGTPDPSKIGKTQ---SHGCVRLTN--------------WDATELG 451 Query: 370 EVVKTRKTTPVKLATEVPV 388 ++V T P+ Sbjct: 452 KMVSRGVTVEFVDEPGAPI 470 >gi|149186455|ref|ZP_01864768.1| hypothetical protein ED21_23238 [Erythrobacter sp. SD-21] gi|148830044|gb|EDL48482.1| hypothetical protein ED21_23238 [Erythrobacter sp. SD-21] Length = 373 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 81/304 (26%), Gaps = 51/304 (16%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+ S + ++ L S + E A++ ++ +GL P VDS L Sbjct: 93 LGDRSKKLIAIQVMLDKS--RHSPGVIDGRMGGNTERAIEYYRKAYGLPPGTGVDSELLA 150 Query: 164 AMNVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIV 221 ++ R + + + + + + +A E Sbjct: 151 SLMDNHGGDIFRTYTITEKDVSRQFYEIPEEFPEMAEMKKLGYRDAKEMLAERFHMDQDF 210 Query: 222 GRVDRQTPILHSRINRIMFNPYW-VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--- 277 +++ + + I K + L + ++ Sbjct: 211 LSALNPGANFSEAGTQLVIVSHGDNALDADIAKIEVRKGENTVAGLDEAGNVVVSYPATI 270 Query: 278 ---------------------GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 ++ W P+ F PG N + T I+ Sbjct: 271 GSSDFPSPSGQMEVAAIAPAPNYTFDPDDQQW----GPDKTFIIPPGPNNPVGGTWIDLG 326 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + +H +P+P + R + GCVR+ N W + V T Sbjct: 327 -KEGYGIHGSPDPQMVAK--RA-SHGCVRLTN--------------WDAAAFAKAVTTGT 368 Query: 377 TTPV 380 Sbjct: 369 PVEF 372 >gi|298370231|ref|ZP_06981547.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281691|gb|EFI23180.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 350 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 69/236 (29%), Gaps = 71/236 (30%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++V +NIP L +G++ V VG+ QT + +I FNP W IP+SI Sbjct: 47 EGQHVFINIPQQRLFIYTDGQLTKAYPVAVGKSMTQTTLGEHKIGVKAFNPTWHIPQSIQ 106 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 ++ + + PG N + Sbjct: 107 KER---------------------------------------GDGVKSVPPGPKNPLGPV 127 Query: 312 KIEFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 + +H T P + GCVR+++ L Sbjct: 128 FVRLGDPKLGLGIHGTNTPASV---PGIRSHGCVRMKSPDAL--------------EFAT 170 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGIIPL 422 + T P + +Y A +D+ + D Y N++ + Sbjct: 171 TITTGS----------PAYVIYQMASLNEDANKNLWLAAYRDPYNKKNLNTDALRK 216 >gi|302382909|ref|YP_003818732.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] gi|302193537|gb|ADL01109.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] Length = 370 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 64/260 (24%), Gaps = 36/260 (13%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + E AV F+ + L G +D + ++ + Sbjct: 109 SPGAIDGLGGQNTEQAVAAFEQANDLPVDGQLDEQVFARLTQNAGAVTTTYTISAADVAG 168 Query: 186 LLEQKMGLR--YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + +E T + I+ Sbjct: 169 PFVATIPTDLAAQGELTALSYRTPLEMLAERFHVTEGLLTALNPGVDFARAGQAILVPAV 228 Query: 244 WVIP-RSIIQKDMMALLRQDPQYLKDNN------------------------IHMIDEKG 278 P + + + ++ + + + + +E Sbjct: 229 ADQPLPAAVTRIEVSKGEGSLRAFGADGTLLAFYPATVGSSARPAPTGRLTVVGVANEPD 288 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + V S + + G N + S IE R+ +H TPEP Sbjct: 289 YTYDPDRV---SYDRGDKKVVVPAGPNNPVGSVWIELS-RDTYGIHGTPEPSKIAKT--- 341 Query: 339 ETSGCVRVRN--IIDLDVWL 356 +SGCVR+ N L + Sbjct: 342 ASSGCVRLTNWSAEQLAKAV 361 >gi|325267376|ref|ZP_08134037.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella denitrificans ATCC 33394] gi|324981171|gb|EGC16822.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella denitrificans ATCC 33394] Length = 363 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 69/232 (29%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YV++NIP L NG++ V VG+ QT + RI FNP W IP SI ++ Sbjct: 78 QYVVINIPQQRLFLYNNGRLQKVYPVAVGKAMTQTTLGEHRIGAKAFNPTWHIPLSIQRE 137 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + PG N + + Sbjct: 138 R---------------------------------------GDGVKSVPPGPRNPLGPVFV 158 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + Sbjct: 159 RLGEPRLGLGIHGTSNP---GSVPGVASHGCVRMKSPDAL--------------EFARTI 201 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGII 420 + T V Y A +D + D Y N+ V + Sbjct: 202 TSGTT----------VMVSYEMAALNQDGAGNLWLAVFRDPYNKRNLRVDAL 243 >gi|163761637|ref|ZP_02168707.1| hypothetical protein HPDFL43_12303 [Hoeflea phototrophica DFL-43] gi|162281131|gb|EDQ31432.1| hypothetical protein HPDFL43_12303 [Hoeflea phototrophica DFL-43] Length = 481 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 70/303 (23%), Gaps = 37/303 (12%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P P LG V L+ L +G + + V+ A+ ++ G Sbjct: 190 GEPSKPFAAPRLGK--AEVAALQVYLDRNGF--SPGVIDGRMGSNVQKALAAWREATGER 245 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA--SLEAVEN 210 L + L + + Y E Sbjct: 246 IDPTDTDLILSRLAADGGLAFTTYTITAEDAAGPFIASVPADYAEKAKLERLAFTSTQEM 305 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 + +I I+ + + R+ + Sbjct: 306 LAERFHMDERYLKELNPGVDFSRPGVQIKVVSTGEKKSGIVTRIIADKARKQLRAYDAAG 365 Query: 271 IHMIDEKGK-------------EVFVEEVDWNSPEPPNFIFRQ---------DPGKINAM 308 + + + P F+Q PG + Sbjct: 366 QLVAAYPATIGSSSTPSPTGEVTIERIARNPGYTYNPKINFKQGDNDRILEVPPGPNGPV 425 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRY 366 S I +H TPEP ++GCVR+ N +L + P S Sbjct: 426 GSVWIALSKP-TYGIHGTPEPSKIGKTS---SNGCVRLTNWDAEELAGMVA---PGVSVS 478 Query: 367 HIE 369 +E Sbjct: 479 FVE 481 >gi|261213952|ref|ZP_05928233.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|260915559|gb|EEX82420.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] Length = 527 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 19/223 (8%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 254 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 311 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 312 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 369 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 370 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 429 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 L G RYV+VN PA E+G+ L V++G + Sbjct: 430 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHRP 471 >gi|260754701|ref|ZP_05867049.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|260674809|gb|EEX61630.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] Length = 527 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 19/223 (8%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 254 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 311 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 312 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 369 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 370 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 429 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 L G RYV+VN PA E+G+ L V++G + Sbjct: 430 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHRP 471 >gi|260757925|ref|ZP_05870273.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260761747|ref|ZP_05874090.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|260668243|gb|EEX55183.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260672179|gb|EEX59000.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] Length = 527 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 19/223 (8%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 254 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 311 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 312 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 369 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 370 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 429 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 L G RYV+VN PA E+G+ L V++G + Sbjct: 430 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHRP 471 >gi|260883727|ref|ZP_05895341.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260873255|gb|EEX80324.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 517 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 19/223 (8%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 244 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 301 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 302 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 359 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 360 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 419 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 L G RYV+VN PA E+G+ L V++G + Sbjct: 420 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHRP 461 >gi|260545357|ref|ZP_05821098.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260096764|gb|EEW80639.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] Length = 517 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 19/223 (8%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY-HSIVNDRFD--NFLARVDMGIDSDIPIISKETIA 76 L + E I A L + + + + P ++ A Sbjct: 244 LRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLARESDPSAYLHGFQPDNAQ--YA 301 Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVS---VQRLRER------LIISGDLDP 126 ++A+A RG + + G+ S V L R L D+ Sbjct: 302 ALKRALA--DTEPPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRDVLA 359 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKK 185 + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ Sbjct: 360 AHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLRW 419 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 L G RYV+VN PA E+G+ L V++G + Sbjct: 420 LP-HDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHRP 461 >gi|330503579|ref|YP_004380448.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina NK-01] gi|328917865|gb|AEB58696.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina NK-01] Length = 318 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L G+ V + +GR +P+ R+ NP W P+SI Sbjct: 96 PREGIVINLAEYRLYYFPKGQNVVHTFPLGIGREGWGSPLGVGRVTVKTPNPAWYPPKSI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ ++ + PG N + Sbjct: 156 REE-----------------------------------HAADGDILPTVVPPGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K+ +H + + F +R + GC R+ N+++L + TP Sbjct: 181 YKMTLSFP-GYLIHGSNKK--FGIGMR-VSHGCFRMLNHNVLELADMVPVGTP 229 >gi|218659271|ref|ZP_03515201.1| hypothetical protein RetlI_06191 [Rhizobium etli IE4771] Length = 211 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 18/190 (9%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSS 108 I S P + + +A + G ++ L G+SS Sbjct: 26 LARMSPDTGAYIASRSPDSPQ--FEALKAELAKLRA-ADGGNEEQIVVSLSGLLRPGDSS 82 Query: 109 VSVQRLRERLIISGDLDPSKGLSVA---------FDAYVESAVKLFQMRHGLDPSGMVDS 159 + + + + G + + + + V+ FQ GL G++ Sbjct: 83 PEIANIVKAVQKHGSETLRTDHAATFAAYAGGSDYSPEIVALVEDFQKERGLKADGVIGQ 142 Query: 160 STLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +T+ AM +I +L+V + + + L + +G RYV++N PA +GK L Sbjct: 143 ATVRAMTGGDTNASKIDKLEVAMEQARWLP-EDLGSRYVMINQPAYMAYYHNDGKEQLSM 201 Query: 218 TVIVGRVDRQ 227 V+VG + Q Sbjct: 202 RVVVGGKNNQ 211 >gi|146307579|ref|YP_001188044.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina ymp] gi|145575780|gb|ABP85312.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina ymp] Length = 318 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + +GR +P+ R+ NP W P+SI Sbjct: 96 PREGIVINLAEYRMYYFPKGQNVVHTYPLGIGREGWGSPLGTGRVTVKTPNPAWYPPKSI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ ++ E PG N + Sbjct: 156 REE-----------------------------------HAAEGDILPTVVPPGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K+ +H + + F +R + GC R+ N+++L + TP Sbjct: 181 YKMTLSFP-GYLIHGSNKK--FGIGMR-VSHGCFRMLNHNVLELAAMVPVGTP 229 >gi|28210881|ref|NP_781825.1| tonB-dependent receptor protein [Clostridium tetani E88] gi|28203320|gb|AAO35762.1| tonB-dependent receptor protein [Clostridium tetani E88] Length = 312 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 64/235 (27%), Gaps = 65/235 (27%) Query: 135 DAYVES--AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 D ++ AV FQ L+ G+V T + + + N + E Sbjct: 122 DENLDFRYAVLQFQSSKNLNCDGIVGPETSKYL----------MNENNNPSDSVPETLKH 171 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +++N L +GKV + V G TP I + NP W Sbjct: 172 GYSMVINKDKRILTVYLDGKVYKKYPVAAGASPSYTPEGKFTIVSKLINPTW-------- 223 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 + G+ + N + Sbjct: 224 --------------------ISTRTGQVISGGT------------------PQNPLGKRW 245 Query: 313 IEFYSRNN--TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 + +H + P + GC+R+ N + +L ++ + P W Sbjct: 246 LGLSIDGGSMYGIHGSNNPWSIGTN---VSLGCIRMFNNDVEELFDFIPMNCPIW 297 >gi|294851105|ref|ZP_06791778.1| hypothetical protein BAZG_00002 [Brucella sp. NVSL 07-0026] gi|294819694|gb|EFG36693.1| hypothetical protein BAZG_00002 [Brucella sp. NVSL 07-0026] Length = 334 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 41/340 (12%), Positives = 93/340 (27%), Gaps = 42/340 (12%) Query: 64 DSDIPIISKETIAQTEKA--IAFYQDILSRG-GWP----ELPIRPLHLGNSSVS-VQRLR 115 S++P + T A Y+ +R G P +P + G + + + + Sbjct: 3 RSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPNDMVPAVEMPKGQGAKAKIAAYQ 62 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L +G + + V+ A ++ G + +++ + + Sbjct: 63 VLLDRAG-ASSPGVIDGRSGSNVDKAAAAYREMTGKIINPTDEAAVNAELEATGGPAFGE 121 Query: 176 LQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 + + ++ + +PA E + + Sbjct: 122 YMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAEMLGEKFHIDEAYLKEINPGVNFNQ 181 Query: 234 RINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEE----- 285 + + N + + + +Q Y ++ + + G Sbjct: 182 PGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDENGKLVVAYPSTIGSSDNPSPSGIVQ 241 Query: 286 -----VDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 ++ N P F+Q PG + + I +H TP P Sbjct: 242 VERIAINPNYTYNPKINFKQGNNDKVLIIPPGPNGPVGTVWIALSKP-TYGIHGTPAPSR 300 Query: 332 FNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIE 369 + GCVR+ N +L + P + E Sbjct: 301 IGKTS---SHGCVRLTNWDAEELAKLV---KPGVTVEFTE 334 >gi|254490906|ref|ZP_05104088.1| ErfK/YbiS/YcfS/YnhG family [Methylophaga thiooxidans DMS010] gi|224463815|gb|EEF80082.1| ErfK/YbiS/YcfS/YnhG family [Methylophaga thiooxydans DMS010] Length = 394 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 46/184 (25%) Query: 190 KMGLRYVLVNIPAASLEAV-----ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +++NI L ++ + + + +GR TP+ +RI + NP W Sbjct: 96 DAPREGIVINIAEMRLYYYPKTAKDSLQQVVTHPIGIGREGWATPLGKTRITNKVKNPTW 155 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI ++ + G Sbjct: 156 TPPESIRKEHL-----------------------------------ENGDPLPKVVPAGP 180 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N + + K+ +H T +P F +R + GC+R+ D+ L TP+ + Sbjct: 181 DNPLGAYKMNLSMP-GYLLHGTNKP--FGVGLR-VSHGCIRLY-PEDI-EHLFHLTPSNT 234 Query: 365 RYHI 368 I Sbjct: 235 GVEI 238 >gi|304386762|ref|ZP_07369030.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ATCC 13091] gi|304339162|gb|EFM05248.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ATCC 13091] Length = 365 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 212 >gi|325202722|gb|ADY98176.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240149] gi|325208718|gb|ADZ04170.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis NZ-05/33] Length = 358 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 212 >gi|325128783|gb|EGC51645.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis N1568] Length = 344 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 93 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 113 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 114 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 157 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 198 >gi|15676382|ref|NP_273518.1| hypothetical protein NMB0471 [Neisseria meningitidis MC58] gi|7225699|gb|AAF40908.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|316984751|gb|EFV63710.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325140891|gb|EGC63400.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis CU385] gi|325199656|gb|ADY95111.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis H44/76] Length = 358 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 212 >gi|121635388|ref|YP_975633.1| hypothetical protein NMC1677 [Neisseria meningitidis FAM18] gi|161870603|ref|YP_001599775.1| hypothetical protein NMCC_1671 [Neisseria meningitidis 053442] gi|218768765|ref|YP_002343277.1| hypothetical protein NMA2014 [Neisseria meningitidis Z2491] gi|254805501|ref|YP_003083722.1| hypothetical protein NMO_1571 [Neisseria meningitidis alpha14] gi|120867094|emb|CAM10860.1| hypothetical protein NMC1677 [Neisseria meningitidis FAM18] gi|121052773|emb|CAM09119.1| hypothetical protein NMA2014 [Neisseria meningitidis Z2491] gi|161596156|gb|ABX73816.1| conserved hypothetical protein [Neisseria meningitidis 053442] gi|254669043|emb|CBA07504.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|254670599|emb|CBA06543.1| hypothetical protein NME_1166 [Neisseria meningitidis alpha153] gi|254672572|emb|CBA06223.1| hypothetical protein NMW_0790 [Neisseria meningitidis alpha275] gi|261391984|emb|CAX49448.1| conserved hypothetical periplasmic protein [Neisseria meningitidis 8013] gi|308388672|gb|ADO30992.1| hypothetical protein NMBB_0524 [Neisseria meningitidis alpha710] gi|319411005|emb|CBY91403.1| conserved hypothetical periplasmic protein [Neisseria meningitidis WUE 2594] gi|325130769|gb|EGC53504.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis OX99.30304] gi|325134836|gb|EGC57472.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M13399] gi|325136857|gb|EGC59455.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M0579] gi|325138839|gb|EGC61390.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ES14902] gi|325142905|gb|EGC65267.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis 961-5945] gi|325198847|gb|ADY94303.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis G2136] gi|325203575|gb|ADY99028.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240355] gi|325205535|gb|ADZ00988.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M04-240196] Length = 358 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 212 >gi|167622954|ref|YP_001673248.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella halifaxensis HAW-EB4] gi|167352976|gb|ABZ75589.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella halifaxensis HAW-EB4] Length = 299 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 42/191 (21%) Query: 190 KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + +++N+ L + GK V +GRV R+TP + ++I + NP W P Sbjct: 88 DVPHKGIVINLAELRLYYFPKGGKEVHVFPVGIGRVGRETPEMVTKIKSRIPNPSWTPPA 147 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI + + G N + Sbjct: 148 SIRKDHL----------------------------------EERGEELPRVVPAGPDNPL 173 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRY 366 I+ + +Y +H T + F +R ++GC+R+ N D+ WL Sbjct: 174 GKFAIQLSYGDGSYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDI-EWLFDKVKYGERVT 228 Query: 367 HIEEVVKTRKT 377 I E VKT Sbjct: 229 IINETVKTSTE 239 >gi|17986480|ref|NP_539114.1| protein ERFK/SRFK [Brucella melitensis bv. 1 str. 16M] gi|17982080|gb|AAL51378.1| protein erfk/srfk [Brucella melitensis bv. 1 str. 16M] Length = 286 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 31/287 (10%), Positives = 75/287 (26%), Gaps = 35/287 (12%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + + L +G + + V+ A ++ G + +++ + Sbjct: 9 AKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGKIINPTDEAAVNAELEAT 66 Query: 169 VDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVENGKVGLRSTVIVGRVDR 226 + + + ++ + +PA E + Sbjct: 67 GGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAEMLGEKFHIDEAYLKEIN 126 Query: 227 QTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFV 283 + + + N + + + +Q Y ++ + + G Sbjct: 127 PDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDENGKLVVAYPSTIGSSDNP 186 Query: 284 EE----------VDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMH 324 ++ N P F+Q PG + + I +H Sbjct: 187 SPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGPVGTVWIALSKP-TYGIH 245 Query: 325 DTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIE 369 TP P + + GCVR+ N +L + P + E Sbjct: 246 GTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTVEFTE 286 >gi|170738380|ref|YP_001767035.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168192654|gb|ACA14601.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 337 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 69/275 (25%), Gaps = 41/275 (14%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIK 184 + + A+K F G+ SG +D EA+ + + + Sbjct: 64 SPGAIDGRDGDNLRGALKAFAEAKGMPASGHLDGRLWEALAGSSQDPVLTDYALTKADAE 123 Query: 185 KLLEQKMGLRYVLVN--IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF-- 240 +++ + + E + + L + Sbjct: 124 GPYAEEIPAKMEDQAELKALSYTGPAEMLAERFHMSRALFDALNPDKDLGRAGTVVTVAA 183 Query: 241 -------NPYWVIP--RSIIQKDMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWN 289 P +P + + + Q Y D + + G E Sbjct: 184 VPPLATDRPGKGLPEEPKVARIVVGKEALQVRAYGGDGALLAVYPASVGSEEKPAPEGRF 243 Query: 290 SPEPPNF-------------------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 E F PG N + IE + + +H TPEP Sbjct: 244 KVEGVTLNPTYTYDPKYAFKGVEATRKFTIKPGPNNPVGLVWIELSAE-SYGIHGTPEPE 302 Query: 331 LFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 + GC+R+ N DL + + + Sbjct: 303 KIGKSE---SHGCIRLTNWDARDLALHVARGATVE 334 >gi|171915811|ref|ZP_02931281.1| ErfK/YbiS/YcfS/YnhG family protein [Verrucomicrobium spinosum DSM 4136] Length = 364 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 38/314 (12%), Positives = 83/314 (26%), Gaps = 60/314 (19%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 LR ++ + L + + A++ +Q HGL + V++ TL+ +V Sbjct: 43 PILRLQIFLDTHLFGPGKVDGRPGEFTTKALRRYQQSHGLAET-EVENHTLDVSSVT--Q 99 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 + ++ + + +E + + Q + Sbjct: 100 LYTTYTIREEDLRFVGDLPSSPAAQSRKKYLPYDSLLEFLTERFHCSPDLLEFINQPLKM 159 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD--------------------NNI 271 + V P I Q + + L + P++L ++ Sbjct: 160 SRLKPGDVVKVPNVEPFLIEQLEPIPSLPEVPEFLNRVIRIDTREKLLGVYEGDKLLASV 219 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFI------------------FRQDPGKINAMASTKI 313 + G W + G N + I Sbjct: 220 PITTGSGYLATP-PGTWKIVGITQLPTFRWDKGVLEYGVRTSNYYELPIGPNNPVGVMWI 278 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +R +H T +P R + GC+R N W + +++ Sbjct: 279 GL-NRAGIGVHGTNQPQTIG---RSASHGCMRTAN--------------WDVVRLVKLIT 320 Query: 374 TRKTTPVKLATEVP 387 T ++ +P Sbjct: 321 KGMTVIIEGPAPIP 334 >gi|225628068|ref|ZP_03786103.1| ErfK/YbiS/YcfS/YnhG domain protein [Brucella ceti str. Cudo] gi|225616893|gb|EEH13940.1| ErfK/YbiS/YcfS/YnhG domain protein [Brucella ceti str. Cudo] Length = 526 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 187 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 234 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 235 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 289 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 290 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 349 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 350 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 409 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 410 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 469 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 470 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 522 Query: 366 YHIE 369 E Sbjct: 523 EFTE 526 >gi|148560592|ref|YP_001259693.1| hypothetical protein BOV_1796 [Brucella ovis ATCC 25840] gi|148371849|gb|ABQ61828.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 526 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 187 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 234 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 235 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 289 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 290 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 349 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 350 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 409 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 410 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLIIPPGPNGP 469 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 470 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 522 Query: 366 YHIE 369 E Sbjct: 523 EFTE 526 >gi|325145008|gb|EGC67291.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240013] Length = 358 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 212 >gi|313667851|ref|YP_004048135.1| hypothetical protein NLA_5060 [Neisseria lactamica ST-640] gi|313005313|emb|CBN86746.1| hypothetical protein NLA_5060 [Neisseria lactamica 020-06] Length = 340 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 212 >gi|157960797|ref|YP_001500831.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella pealeana ATCC 700345] gi|157845797|gb|ABV86296.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella pealeana ATCC 700345] Length = 303 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 42/191 (21%) Query: 190 KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + V++N+ L + GK V +GRV R+TP + +RI + NP W P Sbjct: 88 DVPHKGVVINLAELRLYYFPKGGKEVHVFPVGIGRVGRETPEMVTRIKSRIPNPSWTPPA 147 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI ++ + G N + Sbjct: 148 SIRKEHL----------------------------------EERGEVLPRVVPAGPENPL 173 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRY 366 I+ + +Y +H T + F +R ++GC+R+ N D+ WL Sbjct: 174 GKFAIQLSYGDGSYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDI-EWLFDQVKYGDQVT 228 Query: 367 HIEEVVKTRKT 377 I E VKT Sbjct: 229 IINETVKTSTE 239 >gi|59801822|ref|YP_208534.1| hypothetical protein NGO1484 [Neisseria gonorrhoeae FA 1090] gi|194099286|ref|YP_002002380.1| hypothetical protein NGK_1755 [Neisseria gonorrhoeae NCCP11945] gi|239999553|ref|ZP_04719477.1| hypothetical protein Ngon3_08731 [Neisseria gonorrhoeae 35/02] gi|240014729|ref|ZP_04721642.1| hypothetical protein NgonD_08818 [Neisseria gonorrhoeae DGI18] gi|240017177|ref|ZP_04723717.1| hypothetical protein NgonFA_08426 [Neisseria gonorrhoeae FA6140] gi|240081184|ref|ZP_04725727.1| hypothetical protein NgonF_07718 [Neisseria gonorrhoeae FA19] gi|240113397|ref|ZP_04727887.1| hypothetical protein NgonM_07477 [Neisseria gonorrhoeae MS11] gi|240116255|ref|ZP_04730317.1| hypothetical protein NgonPID1_08470 [Neisseria gonorrhoeae PID18] gi|240121252|ref|ZP_04734214.1| hypothetical protein NgonPI_05693 [Neisseria gonorrhoeae PID24-1] gi|240124087|ref|ZP_04737043.1| hypothetical protein NgonP_09138 [Neisseria gonorrhoeae PID332] gi|240126296|ref|ZP_04739182.1| hypothetical protein NgonSK_08827 [Neisseria gonorrhoeae SK-92-679] gi|240128752|ref|ZP_04741413.1| hypothetical protein NgonS_09032 [Neisseria gonorrhoeae SK-93-1035] gi|254494270|ref|ZP_05107441.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260439930|ref|ZP_05793746.1| hypothetical protein NgonDG_02373 [Neisseria gonorrhoeae DGI2] gi|268595365|ref|ZP_06129532.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268597296|ref|ZP_06131463.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599470|ref|ZP_06133637.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601920|ref|ZP_06136087.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268682710|ref|ZP_06149572.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684880|ref|ZP_06151742.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268687137|ref|ZP_06153999.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043209|ref|ZP_06568932.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398537|ref|ZP_06642715.1| hypothetical protein NGNG_01196 [Neisseria gonorrhoeae F62] gi|59718717|gb|AAW90122.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934576|gb|ACF30400.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226513310|gb|EEH62655.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548754|gb|EEZ44172.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268551084|gb|EEZ46103.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583601|gb|EEZ48277.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586051|gb|EEZ50727.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268622994|gb|EEZ55394.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268625164|gb|EEZ57564.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627421|gb|EEZ59821.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012815|gb|EFE04798.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611008|gb|EFF40105.1| hypothetical protein NGNG_01196 [Neisseria gonorrhoeae F62] gi|317164801|gb|ADV08342.1| hypothetical protein NGTW08_1380 [Neisseria gonorrhoeae TCDC-NG08107] Length = 358 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 71/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGIRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + FR D YG +N+ + Sbjct: 171 ATGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 212 >gi|240118541|ref|ZP_04732603.1| hypothetical protein NgonPID_08787 [Neisseria gonorrhoeae PID1] gi|268604251|ref|ZP_06138418.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268588382|gb|EEZ53058.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 358 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 71/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGIRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + FR D YG +N+ + Sbjct: 171 ATGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 212 >gi|306842981|ref|ZP_07475614.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO2] gi|306286852|gb|EFM58381.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO2] Length = 477 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + + Sbjct: 138 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSVRPQGVPNPND------------ 185 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 186 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 240 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 241 VINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 300 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 301 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 360 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 361 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 420 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 421 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 473 Query: 366 YHIE 369 E Sbjct: 474 EFTE 477 >gi|256059844|ref|ZP_05450032.1| hypothetical protein Bneo5_05772 [Brucella neotomae 5K33] Length = 408 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 69 QGNRDGQVQRSELPQPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 116 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 117 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 171 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 172 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 231 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 232 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 291 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 292 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 351 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 352 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 404 Query: 366 YHIE 369 E Sbjct: 405 EFTE 408 >gi|163843889|ref|YP_001628293.1| ATP synthase subunits region ORF 5 [Brucella suis ATCC 23445] gi|163674612|gb|ABY38723.1| ATP synthase subunits region ORF 5 [Brucella suis ATCC 23445] Length = 408 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 35/351 (9%), Positives = 87/351 (24%), Gaps = 48/351 (13%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 69 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 116 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 117 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 171 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 172 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 231 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 232 MLGEKFHIDEAYLKELNPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 291 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 292 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 351 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + + I +H TP P + GCVR+ N +L + Sbjct: 352 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV 398 >gi|254717934|ref|ZP_05179745.1| hypothetical protein Bru83_00010 [Brucella sp. 83/13] Length = 408 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 69 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 116 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 117 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKATAAYREMTGK 171 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 172 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 231 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + + N + + + +Q Y ++ Sbjct: 232 MLGEKFHIDEVYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 291 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 292 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 351 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 352 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 404 Query: 366 YHIE 369 E Sbjct: 405 EFTE 408 >gi|212633981|ref|YP_002310506.1| LysM domain-containing protein [Shewanella piezotolerans WP3] gi|212555465|gb|ACJ27919.1| LysM domain protein [Shewanella piezotolerans WP3] Length = 260 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 42/187 (22%) Query: 190 KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + V++N+ L + G+ V +GR+ R+TP + +RI + NP W P Sbjct: 49 DVPHKGVVINLAELRLYYFPKGGQEVHVFPVGIGRIGRETPEMVTRIKSRIPNPSWTPPA 108 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI ++ + G N + Sbjct: 109 SIRKEHL----------------------------------EERGEELPRVVLAGPDNPL 134 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRY 366 I+ + +Y +H T + F +R ++GC+R+ N D+ WL + S Sbjct: 135 GKYAIQLSYGDGSYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDI-EWLFNEVKYGDSVT 189 Query: 367 HIEEVVK 373 I + VK Sbjct: 190 VINQTVK 196 >gi|265982876|ref|ZP_06095611.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306839069|ref|ZP_07471888.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NF 2653] gi|264661468|gb|EEZ31729.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306405847|gb|EFM62107.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NF 2653] Length = 477 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 138 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 185 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 186 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKATAAYREMTGK 240 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 241 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 300 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + + N + + + +Q Y ++ Sbjct: 301 MLGEKFHIDEVYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 360 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 361 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 420 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 421 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 473 Query: 366 YHIE 369 E Sbjct: 474 EFTE 477 >gi|261323814|ref|ZP_05963011.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261299794|gb|EEY03291.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] Length = 477 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 138 QGNRDGQVQRSELPQPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 185 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 186 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 240 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 241 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 300 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 301 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 360 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 361 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 420 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 421 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 473 Query: 366 YHIE 369 E Sbjct: 474 EFTE 477 >gi|254228730|ref|ZP_04922153.1| ErfK/YbiS/YcfS/YnhG family [Vibrio sp. Ex25] gi|262396548|ref|YP_003288401.1| hypothetical protein VEA_001253 [Vibrio sp. Ex25] gi|151938677|gb|EDN57512.1| ErfK/YbiS/YcfS/YnhG family [Vibrio sp. Ex25] gi|262340142|gb|ACY53936.1| hypothetical protein VEA_001253 [Vibrio sp. Ex25] Length = 308 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 42/175 (24%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + + +++N+ L G+ + V +GR+ R TP++ +RI++ NP W Sbjct: 94 LILPDVPHKGIVINLAELRLYYFPKGEDIVHVFPVGIGRIGRDTPVMTTRISQKRPNPTW 153 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI + + + G Sbjct: 154 TPPASIRAE-----------------------------------YKAKGIDLPTVVPAGP 178 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 N + + N Y +H T + F +R ++GC+R+ + D+ WL + Sbjct: 179 DNPLGMFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPSDI-EWLFE 228 >gi|237816230|ref|ZP_04595223.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus str. 2308 A] gi|237788297|gb|EEP62512.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus str. 2308 A] Length = 526 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 187 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 234 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 235 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 289 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 290 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 349 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 350 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 409 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 410 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 469 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 470 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 522 Query: 366 YHIE 369 E Sbjct: 523 EFTE 526 >gi|269213836|ref|ZP_06158207.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria cinerea ATCC 14685] gi|269145157|gb|EEZ71575.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria cinerea ATCC 14685] Length = 338 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 68/232 (29%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +G + V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGNLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNTPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKD-SI---IQFRDDIYGLDNVHVGII 420 T V +Y A +D + D YG +N+ + + Sbjct: 171 ATGSPASV----------IYQMAGLNEDAGNNLWLAAFHDPYGKNNLDIASL 212 >gi|127511939|ref|YP_001093136.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella loihica PV-4] gi|126637234|gb|ABO22877.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella loihica PV-4] Length = 313 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 42/187 (22%) Query: 190 KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + +++N+P L +NG+ V +GR+ R+TP + ++I + NP W P Sbjct: 88 DVPRKGIVINLPELRLYYFPKNGREVHVFPVGIGRIGRETPEMTTKIKARIPNPSWTPPA 147 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 S+ + + G N + Sbjct: 148 SLRAEHL----------------------------------RERGEVLPPVVPAGPDNPL 173 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRY 366 ++ + +Y +H T + F +R ++GC+R+ N D+ WL S Sbjct: 174 GKYAMQLSYGDGSYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDI-EWLFHQAKYGDSVR 228 Query: 367 HIEEVVK 373 I + VK Sbjct: 229 VINQTVK 235 >gi|261401380|ref|ZP_05987505.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria lactamica ATCC 23970] gi|269208587|gb|EEZ75042.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria lactamica ATCC 23970] Length = 326 Score = 99.7 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 93 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 113 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 114 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + Sbjct: 157 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 198 >gi|296315100|ref|ZP_06865041.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria polysaccharea ATCC 43768] gi|296838011|gb|EFH21949.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria polysaccharea ATCC 43768] Length = 326 Score = 99.7 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 93 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 113 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 114 RLGDPKLGLGIHGTNAPTSV---PGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + Sbjct: 157 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 198 >gi|23502715|ref|NP_698842.1| hypothetical protein BR1862 [Brucella suis 1330] gi|161619781|ref|YP_001593668.1| ATP synthase subunits region ORF 5 [Brucella canis ATCC 23365] gi|254704882|ref|ZP_05166710.1| hypothetical protein Bsuib36_13385 [Brucella suis bv. 3 str. 686] gi|254707602|ref|ZP_05169430.1| hypothetical protein BpinM_11681 [Brucella pinnipedialis M163/99/10] gi|254708860|ref|ZP_05170671.1| hypothetical protein BpinB_01088 [Brucella pinnipedialis B2/94] gi|254713717|ref|ZP_05175528.1| hypothetical protein BcetM6_10240 [Brucella ceti M644/93/1] gi|254715934|ref|ZP_05177745.1| hypothetical protein BcetM_05787 [Brucella ceti M13/05/1] gi|256030387|ref|ZP_05444001.1| hypothetical protein BpinM2_07025 [Brucella pinnipedialis M292/94/1] gi|256158370|ref|ZP_05456268.1| hypothetical protein BcetM4_05915 [Brucella ceti M490/95/1] gi|256253788|ref|ZP_05459324.1| hypothetical protein BcetB_05752 [Brucella ceti B1/94] gi|23348729|gb|AAN30757.1| conserved hypothetical protein [Brucella suis 1330] gi|161336592|gb|ABX62897.1| ATP synthase subunits region ORF 5 [Brucella canis ATCC 23365] Length = 408 Score = 99.3 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 69 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 116 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 117 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 171 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 172 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 231 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 232 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 291 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 292 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 351 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 352 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 404 Query: 366 YHIE 369 E Sbjct: 405 EFTE 408 >gi|121534304|ref|ZP_01666128.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] gi|121307074|gb|EAX47992.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] Length = 408 Score = 99.3 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 69/263 (26%), Gaps = 80/263 (30%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A+ + + L + ++ ++ + +++N+P+ +LE + V +G+ Sbjct: 2 AVGRGAAIAVLLLFLAILPAYAQIDPDIASPNIVINLPSRTLEFYSGSTLVKVYPVAIGK 61 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 TP + I NP+W PR Sbjct: 62 PSTPTPTGNFSIISKEVNPWWFPPRGGAA------------------------------- 90 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 PG N + + F H T P ++GC Sbjct: 91 ----------------VPPGPDNPLGYRWMGFLPMYGI--HGTNTPWAIGT---AVSNGC 129 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY--ISAWSPKDS 401 VR+ + EVV PV Y + Sbjct: 130 VRMHEA--------------DVEELYEVVPYGT----------PVKVTYDRVKVRVDAHG 165 Query: 402 I--IQFRDDIYGLDNVHVGIIPL 422 + DIYG +V + I Sbjct: 166 NASVGIYPDIYGYSDVTLSEIKR 188 >gi|256370263|ref|YP_003107774.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|260169296|ref|ZP_05756107.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. F5/99] gi|260567644|ref|ZP_05838114.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|261217696|ref|ZP_05931977.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261315090|ref|ZP_05954287.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261316353|ref|ZP_05955550.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261321457|ref|ZP_05960654.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|261755576|ref|ZP_05999285.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|261758808|ref|ZP_06002517.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|265996881|ref|ZP_06109438.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|256000426|gb|ACU48825.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|260157162|gb|EEW92242.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|260922785|gb|EEX89353.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261294147|gb|EEX97643.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|261295576|gb|EEX99072.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261304116|gb|EEY07613.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261738792|gb|EEY26788.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|261745329|gb|EEY33255.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|262551349|gb|EEZ07339.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] Length = 477 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 138 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 185 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 186 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 240 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 241 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 300 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 301 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 360 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 361 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 420 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 421 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 473 Query: 366 YHIE 369 E Sbjct: 474 EFTE 477 >gi|27379486|ref|NP_771015.1| hypothetical protein blr4375 [Bradyrhizobium japonicum USDA 110] gi|27352638|dbj|BAC49640.1| blr4375 [Bradyrhizobium japonicum USDA 110] Length = 353 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 37/294 (12%), Positives = 71/294 (24%), Gaps = 49/294 (16%) Query: 117 RLIISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 RL + D + F + A++ + L S +A+ Sbjct: 74 RLQVLLDRAHFSPGEIDGRFGENAKKALRAYAEARQLPGSEAPMEEVWKALRADERPVTL 133 Query: 175 QLQVNLMRIKKLLEQKMGLRYV-LVNIPA-ASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + K+ + + +IP E + + Sbjct: 134 TYTITERDAAGPFLNKLPSKMEDMKDIPKLGFTSPREALAEKFHMSEQLLAALNPGRRFD 193 Query: 233 SRINRIMF----NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM--------------I 274 + I+ + P + + + +RQ + +N + Sbjct: 194 RAGDTIVVVDTASAGEGAPAKADRVE-VDKVRQTVKLFDKSNALIGFYPATVGSEDKPSP 252 Query: 275 DEKGKEVFVEEVDWNSPEP--------PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 K V + P F PG N + + I + +H T Sbjct: 253 SGTLKVTEVSKNPLYRYNPAYHFKGVRSRKPFTIKPGPNNPVGTVWINLSAE-GYGIHGT 311 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 P P + E+ GCVR+ N W + V Sbjct: 312 PSPDKISK---AESHGCVRLTN--------------WDAERVAGSVAKGTPVAF 348 >gi|332799591|ref|YP_004461090.1| ErfK/YbiS/YcfS/YnhG family protein [Tepidanaerobacter sp. Re1] gi|332697326|gb|AEE91783.1| ErfK/YbiS/YcfS/YnhG family protein [Tepidanaerobacter sp. Re1] Length = 307 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 84/267 (31%), Gaps = 80/267 (29%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ ++ +L G + +S +D AVK FQ GL+ G++ S TL+ + Sbjct: 41 MYGHDVREIQTQLKNMGYY--NDPISGVYDNITSKAVKAFQQDMGLEVDGILGSRTLDKI 98 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 + + L+ E+ G +++ L +++GK + V VG+ + Sbjct: 99 AELFEQPVAHLE---------PEKPKGEVSLVIFTLERQLIVLDDGKPFKQFPVAVGKFN 149 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 TPI I + I + G Sbjct: 150 TPTPIGIFTITQKD----------IWSGEF----------------------GSRWMRLS 177 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 V W Y +H T +P FE+SGC+ Sbjct: 178 VPW-------------------------------GIYGIHGTNKPWSIGT---FESSGCI 203 Query: 345 RVRN--IIDLDVWLLKDTPTWSRYHIE 369 R+ N + + W+ T + ++ Sbjct: 204 RMYNTHVEQVYEWVKIGTKVFMVGGVD 230 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V +++RL G + ++ + AV FQ GL PSG VD++ Sbjct: 239 TLSQGSRGSDVLEVQKRLAGYGFY--NGDYDGIYEHETQKAVLAFQKAKGLYPSGKVDAA 296 Query: 161 TLEAMNV 167 T + + + Sbjct: 297 TYKELGI 303 >gi|306844837|ref|ZP_07477420.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO1] gi|306274769|gb|EFM56550.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO1] Length = 477 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 138 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 185 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 186 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 240 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 241 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 300 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 301 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 360 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 361 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 420 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 421 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 473 Query: 366 YHIE 369 E Sbjct: 474 EFTE 477 >gi|261220921|ref|ZP_05935202.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|265987425|ref|ZP_06099982.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|260919505|gb|EEX86158.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|264659622|gb|EEZ29883.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] Length = 471 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 90/364 (24%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 132 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 179 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 180 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 234 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 235 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 294 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 295 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 354 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 355 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 414 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 415 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 467 Query: 366 YHIE 369 E Sbjct: 468 EFTE 471 >gi|330860173|emb|CBX70494.1| hypothetical protein YEW_AT04130 [Yersinia enterocolitica W22703] Length = 132 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 5/96 (5%) Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 +IVGR R+TP++ S +N ++ NP W +P S++++D++ R D Y + + ++ Sbjct: 1 MIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWS 60 Query: 279 K---EVFVEEVDWNSP--EPPNFIFRQDPGKINAMA 309 V +DW+ + RQ PG N++ Sbjct: 61 NDAEVVDPSMIDWSMISPNNFPYRLRQAPGASNSLG 96 >gi|150389053|ref|YP_001319102.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] gi|149948915|gb|ABR47443.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] Length = 280 Score = 99.3 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 77/285 (27%), Gaps = 86/285 (30%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V ++ERL+ G D + +D + AV+ +Q +G+ P G+V T Sbjct: 12 EPYMEGPDVMHIQERLVEIGFYDGE--IDGIYDEGLFEAVRTYQTEYGITPDGIVGPDTW 69 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 ++ + D+ + + +++ L + ++ V VG Sbjct: 70 NSIGLSPDVMVDL--------------PTEGYAIDIDLEQRILTLKQYTEILQSYPVAVG 115 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + TP RI + NP G Sbjct: 116 KPQTPTPPGDWRIIQKTLNPGGP-------------------------------FGTRWM 144 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 + W +H T P ++G Sbjct: 145 RINIPWGGY------------------------------GIHGTDAPESIGT---AASNG 171 Query: 343 CVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 C+R+ ++ L + TP I + + + + + Sbjct: 172 CIRMFNEDVEVLYDIVPLGTPV----RITGEIFSGRILTIGVEPR 212 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + ++ L G + + +D AV+ FQ + G+V T + + Sbjct: 213 ADILDVKNILATLGYY--EGEIDMIYDEETMEAVRNFQRDFNIIADGVVGVDTYNKLQLA 270 Query: 169 VDL 171 ++ Sbjct: 271 IEQ 273 >gi|260755548|ref|ZP_05867896.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260760495|ref|ZP_05872838.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260670927|gb|EEX57748.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675656|gb|EEX62477.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] Length = 487 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 148 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 195 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 196 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 250 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 251 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 310 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 311 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 370 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 371 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 430 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 431 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 483 Query: 366 YHIE 369 E Sbjct: 484 EFTE 487 >gi|265993629|ref|ZP_06106186.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|262764610|gb|EEZ10531.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|326539581|gb|ADZ87796.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M5-90] Length = 487 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 148 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 195 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 196 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 250 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 251 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 310 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 311 MLGEKFHIDEAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 370 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 371 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 430 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 431 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 483 Query: 366 YHIE 369 E Sbjct: 484 EFTE 487 >gi|62290723|ref|YP_222516.1| hypothetical protein BruAb1_1841 [Brucella abortus bv. 1 str. 9-941] gi|82700637|ref|YP_415211.1| hypothetical protein BAB1_1867 [Brucella melitensis biovar Abortus 2308] gi|254690012|ref|ZP_05153266.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 6 str. 870] gi|254694503|ref|ZP_05156331.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 3 str. Tulya] gi|254696128|ref|ZP_05157956.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 2 str. 86/8/59] gi|254731046|ref|ZP_05189624.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 4 str. 292] gi|256258268|ref|ZP_05463804.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 9 str. C68] gi|62196855|gb|AAX75155.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616738|emb|CAJ11823.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis biovar Abortus 2308] Length = 408 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 69 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 116 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 117 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 171 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 172 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 231 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 232 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 291 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 292 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 351 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 352 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 404 Query: 366 YHIE 369 E Sbjct: 405 EFTE 408 >gi|189024936|ref|YP_001935704.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus S19] gi|260545987|ref|ZP_05821727.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260758771|ref|ZP_05871119.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260884572|ref|ZP_05896186.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|261214819|ref|ZP_05929100.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|189020508|gb|ACD73230.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus S19] gi|260096094|gb|EEW79970.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260669089|gb|EEX56029.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260874100|gb|EEX81169.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|260916426|gb|EEX83287.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] Length = 477 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 138 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 185 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 186 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 240 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 241 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 300 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 301 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 360 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 361 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 420 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 421 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 473 Query: 366 YHIE 369 E Sbjct: 474 EFTE 477 >gi|297247110|ref|ZP_06930828.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 5 str. B3196] gi|297174279|gb|EFH33626.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 5 str. B3196] Length = 471 Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 132 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 179 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 180 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 234 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 235 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 294 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 295 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 354 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 355 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 414 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 415 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 467 Query: 366 YHIE 369 E Sbjct: 468 EFTE 471 >gi|260562785|ref|ZP_05833271.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|265999304|ref|ZP_05465741.2| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 2 str. 63/9] gi|260152801|gb|EEW87893.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|263093153|gb|EEZ17267.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 2 str. 63/9] gi|326409867|gb|ADZ66932.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis M28] Length = 477 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 138 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 185 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 186 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 240 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 241 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 300 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 301 MLGEKFHIDEAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 360 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 361 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 420 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 421 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 473 Query: 366 YHIE 369 E Sbjct: 474 EFTE 477 >gi|225853302|ref|YP_002733535.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] gi|256045477|ref|ZP_05448362.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256112202|ref|ZP_05453123.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|225641667|gb|ACO01581.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] Length = 408 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 69 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 116 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 117 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 171 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 172 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 231 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 232 MLGEKFHIDEAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 291 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 292 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 351 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 352 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 404 Query: 366 YHIE 369 E Sbjct: 405 EFTE 408 >gi|330448220|ref|ZP_08311868.1| lysM domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492411|dbj|GAA06365.1| lysM domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 300 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRS--TVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + ++VN+ L + +GRV R+TP + + IN + NP W P Sbjct: 88 DVSHKGIVVNLAELRLYYFPKDDASKVYIFPIGIGRVGRETPSMTTTINEKVKNPTWTPP 147 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI ++ ++ G N Sbjct: 148 ASIRKE-----------------------------------HAARGDILPAVVPAGPDNP 172 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + K+ + Y +H T + F +R + GC+R+ N D WL ++ Sbjct: 173 LGDYKMRLAYGHGEYLIHGTNKD--FGIGMR-VSGGCIRM-NPWD-VEWLFPHVALGTQV 227 Query: 367 HI 368 I Sbjct: 228 RI 229 >gi|269965347|ref|ZP_06179467.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829993|gb|EEZ84222.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 308 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 42/174 (24%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + + +++N+ L G+ + V +GR+ R TP++ +RI++ NP W Sbjct: 94 LILPDVPYKGIVINLAELRLYYFPKGEDIVHVFPVGIGRIGRDTPVMTTRISQKRPNPTW 153 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI + + + G Sbjct: 154 TPPASIRAE-----------------------------------YKAKGIDLPAVVPAGP 178 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 N + + N Y +H T + F +R ++GC+R+ + D+ WL Sbjct: 179 DNPLGMFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPSDI-EWLF 227 >gi|227873353|ref|ZP_03991613.1| peptidoglycan-binding domain 1 [Oribacterium sinus F0268] gi|227840789|gb|EEJ51159.1| peptidoglycan-binding domain 1 [Oribacterium sinus F0268] Length = 455 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 9/151 (5%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 I L + V++ ++ + ++ + D SK Sbjct: 76 TIDGQAEDLAPVNLTVGVINSVVKDLQQRLM----NLGYMEEDEPTTYYGDATSKAVQYF 131 Query: 78 TEKAIAFYQDILSRGGWPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + I W L P LG + +++ RL G L S ++ Sbjct: 132 QRQTGRKMDGITGVDTWDALMSESAPHYAAKLGFQGDDITKIQYRLYNLGYLTESGQING 191 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 FD E+AVK Q + L G V +T Sbjct: 192 TFDQDTETAVKKLQEVNKLTIDGTVGQTTYN 222 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + G +L L +G + V+ L++RL+ G ++ + + AV+ F Sbjct: 73 EGVTIDGQAEDLAPVNLTVGVINSVVKDLQQRLMNLGYMEEDEPT-TYYGDATSKAVQYF 131 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q + G G+ T +A+ Sbjct: 132 QRQTGRKMDGITGVDTWDAL 151 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 5/149 (3%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 L + I EI+ + + ++ + + A + G+ + I + ++ + + Sbjct: 223 LLYSDEVKANIIALGEQSEIVKKYQNRLIALGYLSGEADGNFGLSTQNAIRAFQS--RND 280 Query: 80 KAIAFYQDILSRGGWPELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + + Y +R +P LG S V+ ++ L+ G L S F Sbjct: 281 QVVDGYLGPDTRSLMDSENAKPFGMRLGEQSDDVKNMQNLLVKYGYLSQD-KASGYFGEL 339 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + AV FQ +GL G + TL+ + Sbjct: 340 TKDAVIAFQSVNGLGTDGTAGAKTLQLLQ 368 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 13/188 (6%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHL 104 +N FD + + T+ QT + Y D E+ + L Sbjct: 186 SGQINGTFDQDTETAVKKLQEVNKLTIDGTVGQTTYNLL-YSD--------EVKANIIAL 236 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V++ + RLI G L F ++A++ FQ R+ G + T Sbjct: 237 GEQSEIVKKYQNRLIALGYLSGEA--DGNFGLSTQNAIRAFQSRNDQVVDGYLGPDTRSL 294 Query: 165 MN-VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL-EAVENGKVGLRSTVIVG 222 M+ +L +K + + Y+ + + E ++ + +S +G Sbjct: 295 MDSENAKPFGMRLGEQSDDVKNMQNLLVKYGYLSQDKASGYFGELTKDAVIAFQSVNGLG 354 Query: 223 RVDRQTPI 230 Sbjct: 355 TDGTAGAK 362 >gi|254506022|ref|ZP_05118167.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus 16] gi|219551245|gb|EED28225.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus 16] Length = 301 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 65/197 (32%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V++N+ L E + + V +GRV R TP + + I++ NP W P SI +K+ Sbjct: 93 VVINLAELRLYYFEPDSGLVHIFPVGIGRVGRDTPEMSTTISQKRPNPTWTPPASI-RKE 151 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +A G N + + Sbjct: 152 YLAK----------------------------------GIELPAVVPAGPENPLGEYALR 177 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T + F +R +SGC+R+ D+ WL P S V+ Sbjct: 178 LAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-DWLF---PKVSLGEKVRVIN 229 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 --EPIKVSLEPDRSVFI 244 >gi|265991901|ref|ZP_06104458.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|263002967|gb|EEZ15260.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] Length = 462 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 37/364 (10%), Positives = 91/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P + + Sbjct: 123 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPSARPQGVPNPND------------ 170 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 171 ---MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 225 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 226 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 285 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 286 MLGEKFHIDEAYLKEINPDVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 345 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 346 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 405 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + + GCVR+ N +L + P + Sbjct: 406 VGTVWIALSKP-TYGIHGTPAPSRIGKIS---SHGCVRLTNWDAEELAKLV---KPGVTV 458 Query: 366 YHIE 369 E Sbjct: 459 EFTE 462 >gi|261380022|ref|ZP_05984595.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria subflava NJ9703] gi|284797229|gb|EFC52576.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria subflava NJ9703] Length = 368 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI ++ Sbjct: 48 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 107 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 108 R---------------------------------------NDGVKSVPAGPNNPLGPVFV 128 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +H T P + GCVR+++ L + + Sbjct: 129 RLGDPKLSLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 171 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + D Y N+ + Sbjct: 172 ATGSPASV----------IYQMASLNEDANQNLWLAAYRDPYDKKNLDTAAL 213 >gi|254700512|ref|ZP_05162340.1| hypothetical protein Bsuib55_06621 [Brucella suis bv. 5 str. 513] Length = 408 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 39/364 (10%), Positives = 92/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P A Q + + Sbjct: 69 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPS-------------ARLQGVPNPN 115 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 116 D--MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 171 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 172 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 231 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 232 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 291 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 292 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 351 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 352 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 404 Query: 366 YHIE 369 E Sbjct: 405 EFTE 408 >gi|261213072|ref|ZP_05927356.1| hypothetical protein VCJ_003350 [Vibrio sp. RC341] gi|260838137|gb|EEX64814.1| hypothetical protein VCJ_003350 [Vibrio sp. RC341] Length = 306 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 47/202 (23%) Query: 191 MGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + +++N+ L + V +GR+ R TP++ + I+ NP W P S Sbjct: 90 IPYEGIVINLAELRLYYFRPDEGKVYIFPVGIGRIGRDTPVMQTSISSKRKNPTWTPPES 149 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + + G N + Sbjct: 150 IRRE-----------------------------------HKAKGDILPAVVPAGPDNPLG 174 Query: 310 STKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + + Y +H T + F +R +SGC+R+ + D+ WL + + I Sbjct: 175 DYAMRLAYGSGEYLIHGTNKD--FGIGMR-VSSGCIRM-DPKDI-EWLFQQVERGEKVRI 229 Query: 369 EEVVKTRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 IN-----EPIKVALEPDRSVFI 246 >gi|218677376|ref|ZP_03525273.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium etli CIAT 894] Length = 220 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 53/224 (23%), Gaps = 33/224 (14%) Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PA-ASLEAVENGKVGLRSTVIVGRVDRQTP 229 + + ++ Y + P+ A E + Sbjct: 4 PVVSYTITPADAAGPFVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLKEMNPGA 63 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNIHMID------------E 276 I + + + R+ Y N+ Sbjct: 64 DFSVAGTVIKVVNPGEPKSGEVARIIADKGRKQVFAYDSAGNLLAAYPASIGSTDTPSPS 123 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTP 327 V + P F+Q PG + + + +H TP Sbjct: 124 GTVTVERVAFNPGYTYNPKINFQQGANDKILNIPPGPNGPVGTVWMALSKP-TYGIHGTP 182 Query: 328 EPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIE 369 EP R ++ GC+R+ N +L + P + ++ Sbjct: 183 EPSKIG---RTQSHGCIRLTNWDATELAQMV---KPGVTVEFVD 220 >gi|91223276|ref|ZP_01258542.1| hypothetical protein V12G01_05516 [Vibrio alginolyticus 12G01] gi|91192089|gb|EAS78352.1| hypothetical protein V12G01_05516 [Vibrio alginolyticus 12G01] Length = 308 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 42/174 (24%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + + +++N+ L G+ + V +GR+ R TP++ +RI++ NP W Sbjct: 94 LILPDVPYKGIVINLAELRLYYFPKGENIVHVFPVGIGRIGRDTPVMTTRISQKRPNPTW 153 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI + + + G Sbjct: 154 TPPASIRAE-----------------------------------YKAKGIDLPAVVPAGP 178 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 N + + N Y +H T + F +R ++GC+R+ + D+ WL Sbjct: 179 DNPLGMFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPSDI-EWLF 227 >gi|294011303|ref|YP_003544763.1| hypothetical protein SJA_C1-13170 [Sphingobium japonicum UT26S] gi|292674633|dbj|BAI96151.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 362 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 38/305 (12%), Positives = 76/305 (24%), Gaps = 73/305 (23%) Query: 124 LDPSKGLSVAFDAY----VESAVKLFQMRHGLDPSGMVDSSTLEAM---NVPVDLRIRQL 176 LD + D +A+K FQ GL +G D +T A+ + ++ Sbjct: 71 LDRAGFSPGVLDGKEGMSFTTALKGFQEAKGLPTTGRYDEATARALLGDRPQPATWLVKI 130 Query: 177 QVNLMRIKKL-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + + + + + L +E + V Sbjct: 131 PAGFAKGPFFAVPKDLNDQAKLP--ALGYRNLLEKLAERFHTRPEVLLALNPPNTKVGAG 188 Query: 236 NRIMFNPYWVIPRSIIQKD-----------------------MMALLRQDPQYLKDNNIH 272 I P + I+ D ++ + N Sbjct: 189 ATIRVPAIANQPVARIEGDERGWGETLASLGVAKDQPQADHIVVDKSDGVLRAYDAQNRL 248 Query: 273 MI---DEKGKEVFVEEVD-------------------WNSPEPPNFIFRQDPGKINAMAS 310 + G + + + + PG + Sbjct: 249 IAQFPATMGSQHDPLPIGTWEIKGLSRNPDFHYNPDLFWDASSTDEKAVLKPGPNGPVGV 308 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 I+ + +H TPEP R E+ GC+R+ N W + + Sbjct: 309 VWIDLSKPH-YGIHGTPEPQTIG---RTESHGCIRLTN--------------WDAARLAQ 350 Query: 371 VVKTR 375 +V++ Sbjct: 351 MVQSG 355 >gi|289646814|ref|ZP_06478157.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 321 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRA-SHGCFRMYNNNVLELADM 223 >gi|261751015|ref|ZP_05994724.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|261740768|gb|EEY28694.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] Length = 477 Score = 97.4 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 39/364 (10%), Positives = 92/364 (25%), Gaps = 51/364 (14%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 D + S + + + D P A Q + + Sbjct: 138 QGNRDGQVQRSELPPPGADYPDNTGTASIAPDYRQPS-------------ARLQGVPNPN 184 Query: 93 GWPELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P + G + + + + L +G + + V+ A ++ G Sbjct: 185 D--MVPAVEMPKGQGAKAKIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYREMTGK 240 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVE 209 + +++ + + + + ++ + +PA E Sbjct: 241 IINPTDEAAVNAELEATGGPAFGEYMITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVAE 300 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + N + + + +Q Y ++ Sbjct: 301 MLGEKFHIDEAYLKEINPGVNFNQPGSVVKVPNLGKPVRAKVARIIADKGRKQVRGYDEN 360 Query: 269 NNIHMIDEK--GKEVFVEE----------VDWNSPEPPNFIFRQ---------DPGKINA 307 + + G ++ N P F+Q PG Sbjct: 361 GKLVVAYPSTIGSSDNPSPSGIVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGP 420 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + I +H TP P + GCVR+ N +L + P + Sbjct: 421 VGTVWIALSKP-TYGIHGTPAPSRIGKTS---SHGCVRLTNWDAEELAKLV---KPGVTV 473 Query: 366 YHIE 369 E Sbjct: 474 EFTE 477 >gi|241759332|ref|ZP_04757438.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria flavescens SK114] gi|241320468|gb|EER56765.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria flavescens SK114] Length = 353 Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI ++ Sbjct: 33 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 93 R---------------------------------------NDGVKSVPAGPNNPLGPVFV 113 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +H T P + GCVR+++ L + + Sbjct: 114 RLGDPKLSLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + D Y N+ + Sbjct: 157 ATGSPASV----------IYQMASLNEDANQNLWLAAYRDPYDKKNLDTAAL 198 >gi|331016238|gb|EGH96294.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 333 Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPNVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|292490724|ref|YP_003526163.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus halophilus Nc4] gi|291579319|gb|ADE13776.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus halophilus Nc4] Length = 322 Score = 97.0 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 57/202 (28%), Gaps = 46/202 (22%) Query: 192 GLRYVLVNIPAASLEAVENGK-----VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 R +++N+ L + V + + +GR TP+ + + NP W+ Sbjct: 103 PRRGIVINLAEMRLYYFPESQPGQPGVVVTHPIGIGREGWSTPLGKTSVISKKKNPTWIP 162 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + + PG N Sbjct: 163 PESIRAE-----------------------------------HEANGDPLPKVVPPGSDN 187 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + +H T P +R + GC+R+ D+ + S Sbjct: 188 PLGKFALRLGMP-GYLIHGTNRPW--GVGMR-VSHGCIRLY-PEDIASLFAQVKVGASVN 242 Query: 367 HIEEVVKTR-KTTPVKLATEVP 387 + + K K + L VP Sbjct: 243 IVYQPFKAGIKDAVLYLEAHVP 264 >gi|323496502|ref|ZP_08101560.1| hypothetical protein VISI1226_13136 [Vibrio sinaloensis DSM 21326] gi|323318779|gb|EGA71732.1| hypothetical protein VISI1226_13136 [Vibrio sinaloensis DSM 21326] Length = 301 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V++N+ L E + V +GRV R TP + + I++ NP W P SI +K+ Sbjct: 93 VVINLAELRLYYFEPNTDLVHIFPVGIGRVGRDTPEMTTTISQKRPNPTWTPPASI-RKE 151 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +A G N + + Sbjct: 152 YLAK----------------------------------GIELPAVVPAGPENPLGEYALR 177 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T + F +R +SGC+R+ + D+ WL + + Sbjct: 178 LAHGAGDYLIHGTNKD--FGIGLR-VSSGCIRM-DPKDI-DWLFPRVNLGDKVRVIN--- 229 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 --EPIKVSLEPDRSVFI 244 >gi|90577710|ref|ZP_01233521.1| hypothetical protein VAS14_11704 [Vibrio angustum S14] gi|90440796|gb|EAS65976.1| hypothetical protein VAS14_11704 [Vibrio angustum S14] Length = 300 Score = 97.0 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 43/182 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRS--TVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + ++VN+ L + +GRV R+TP + + IN + NP W P Sbjct: 88 DVAHKGIVVNLAELRLYYFPKDDASKVYIFPIGIGRVGRETPSMTTSINEKVKNPTWTPP 147 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI ++ ++ G N Sbjct: 148 ASIRKE-----------------------------------HAARGDILPAVVPAGPDNP 172 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + K+ + Y +H T + F +R + GC+R+ N D WL ++ Sbjct: 173 LGNYKMRLAYGHGEYLIHGTNKD--FGIGMR-VSGGCIRM-NPWD-VEWLFPHVALGTQV 227 Query: 367 HI 368 I Sbjct: 228 RI 229 >gi|330958991|gb|EGH59251.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 321 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGMS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNDNVLELADM 223 >gi|319639270|ref|ZP_07994021.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa C102] gi|317399454|gb|EFV80124.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa C102] Length = 368 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI ++ Sbjct: 48 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTTLGEHKIGAKAYNPVWHIPKSIQKE 107 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 108 R---------------------------------------NDGVKSVPAGPNNPLGPVFV 128 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +H T P + GCVR+++ L + + Sbjct: 129 RLGDPKLSLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 171 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + D Y N+ + Sbjct: 172 ATGAPASV----------IYQMASLNEDANQNLWLAAYRDPYDKKNLDTAAL 213 >gi|239832941|ref|ZP_04681270.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] gi|239825208|gb|EEQ96776.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] Length = 496 Score = 96.6 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 30/274 (10%), Positives = 70/274 (25%), Gaps = 32/274 (11%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + + L +G + + V+ A + G + +++ + Sbjct: 219 ARIAAYQVLLDRAG--ASPGVIDGRSGSNVDKAAAAYGELTGKSVNPTDEAAVNAELEAT 276 Query: 169 VDLRIRQLQVNLMRI-KKLLEQKMGLRYVLVNIPAA-SLEAVENGKVGLRSTVIVGRVDR 226 + + + ++ + +PA E + Sbjct: 277 GGPAFTEYTITNEDVGRQYVASIPEDYAHKAQLPAMAYTSVTEMLGEKFHIDEAYLKEIN 336 Query: 227 QTPILHSRINR-IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFV 283 + + + N + + + +Q Y + + + G Sbjct: 337 PGVNFNQPGSIVKVPNLGKPVRTKVARIIADKGRKQVRGYDETGKLVVAYPSTIGSSDNP 396 Query: 284 EE----------VDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMH 324 ++ N P F+Q PG + + I +H Sbjct: 397 SPSGTVQVERIAINPNYTYNPKINFKQGNNDKVLTIPPGPNGPVGTVWIALSKP-TYGIH 455 Query: 325 DTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 TPEP + GCVR+ N +L + Sbjct: 456 GTPEPSRIGKTS---SHGCVRLTNWDAEELAKLV 486 >gi|312883050|ref|ZP_07742781.1| hypothetical protein VIBC2010_07174 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369210|gb|EFP96731.1| hypothetical protein VIBC2010_07174 [Vibrio caribbenthicus ATCC BAA-2122] Length = 300 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 83/241 (34%), Gaps = 47/241 (19%) Query: 135 DAYVESAVKLFQMRHGLDPSGM-----VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 D+ + V+ Q+ G +G+ + TL A N VD + L +++ Sbjct: 26 DSRLVGRVQYHQVEKGETLAGIAKHYHIGFLTLMAANKGVDPFLPAEGHALTIPTQIILP 85 Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + V++N+ L + +G+ V +GR+ R TP++ + I++ P W P Sbjct: 86 DVKRVGVVINLAELRLYYFDPDGQTVHIFPVGIGRIGRDTPVMQTSISQKRIKPTWTPPD 145 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI + YL + G N + Sbjct: 146 SIRK-----------SYLAE------------------------GIKLPPVVPAGPDNPL 170 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T + F +R +SGC+R+ D+ WL R Sbjct: 171 GNHALRLAYGAGDYLIHGTNKD--FGVGLR-VSSGCIRME-PNDI-EWLFSQVQIGERVK 225 Query: 368 I 368 I Sbjct: 226 I 226 >gi|225076549|ref|ZP_03719748.1| hypothetical protein NEIFLAOT_01597 [Neisseria flavescens NRL30031/H210] gi|224952120|gb|EEG33329.1| hypothetical protein NEIFLAOT_01597 [Neisseria flavescens NRL30031/H210] Length = 353 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI ++ Sbjct: 33 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 93 R---------------------------------------NDGVKSVPAGPNNPLGPVFV 113 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +H T P + GCVR+++ L + + Sbjct: 114 RLGDPKLSLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + D Y N+ + Sbjct: 157 ATGSPASV----------IYQMASLNEDANQNLWLAAYRDPYDKKNLDTAAL 198 >gi|298292778|ref|YP_003694717.1| Lysozyme [Starkeya novella DSM 506] gi|296929289|gb|ADH90098.1| Lysozyme [Starkeya novella DSM 506] Length = 508 Score = 96.6 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 82/296 (27%), Gaps = 64/296 (21%) Query: 88 ILSRGGWPELPIRPLHLGNSSV------SVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + G P+L L +G + ++ RL+ G + F+ ++A Sbjct: 244 LPRTKGAPKLDRPLLLVGMEDDEENPGKDIAEMQARLVELGYY--RGPVDGIFNPATDAA 301 Query: 142 VKLFQMRHGLDP--SGMVDSSTLE--AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 V+ FQ G V T + + P + K L R Sbjct: 302 VREFQTEFFGWSEADGRVGPKTWKKLWGDAPPKPEEAIPPLQGSAGKTYLLLTRTDRRDR 361 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 +L V +G V G+ +Q +F P P + + + Sbjct: 362 YGCMVMNLTYVRHGTAVGVLEVCSGQSRKQ-----------IFRPGPHSPAGSM--EPLP 408 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + NI + K + N + KI Sbjct: 409 EGKWSIG-----NIEWAEGKDN-----------YSGRIY--------NNGLGPAKIRM-- 442 Query: 318 RNNTYMHDTPEPIL-------FNNVVRFETSGCVRVRNIID---LDVWLLKDTPTW 363 Y+ P +N T+GC+ ++NI D L WL + P Sbjct: 443 ---EYLDPGQTPRSAIEIHIDWNRPTAPGTAGCIGIQNISDFRTLVTWLRETDPKE 495 >gi|153836106|ref|ZP_01988773.1| ErfK/YbiS/YcfS/YnhG [Vibrio parahaemolyticus AQ3810] gi|260901112|ref|ZP_05909507.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus AQ4037] gi|149750860|gb|EDM61605.1| ErfK/YbiS/YcfS/YnhG [Vibrio parahaemolyticus AQ3810] gi|308109403|gb|EFO46943.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus AQ4037] Length = 308 Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 42/168 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + +++N+ L G+ V V +GR+ R TP++ + I++ NP W P SI Sbjct: 100 PHQGIVINLAELRLYYFPEGEDVVHVFPVGIGRIGRDTPVMTTSISQKRPNPTWTPPASI 159 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + + G N + Sbjct: 160 RAE-----------------------------------YRAKGVDLPAVVPAGPDNPLGL 184 Query: 311 TKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 + N Y +H T + F +R ++GC+R+ + D+ WL Sbjct: 185 FALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPSDI-EWLF 227 >gi|84385389|ref|ZP_00988421.1| uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] gi|84379986|gb|EAP96837.1| uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] Length = 353 Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 47/207 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + +++N+ L E K + V +GRV R TP + ++I++ NP W Sbjct: 135 LILPDTPRKGIVINLAELRLYYFEPEKNQVHVFPVGIGRVGRDTPEMITKISQKRPNPTW 194 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI ++ YL+ G Sbjct: 195 TPPNSIRKE-----------YLEK------------------------GIELPRVVPAGP 219 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + Y +H T + F +R +SGC+R+ D+ WL + Sbjct: 220 ENPLGEYALRLAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-EWLFEQ---V 271 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHF 390 SR ++ + V L + V Sbjct: 272 SRGEQVTIID--EPIKVSLEPDRSVFV 296 >gi|328469263|gb|EGF40209.1| hypothetical protein VP10329_10281 [Vibrio parahaemolyticus 10329] Length = 308 Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 42/168 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + +++N+ L G+ V V +GR+ R TP++ + I++ NP W P SI Sbjct: 100 PHQGIVINLAELRLYYFPEGEDVVHVFPVGIGRIGRDTPVMTTSISQKRPNPTWTPPASI 159 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + + G N + Sbjct: 160 RAE-----------------------------------YRAKGVDLPAVVPAGPDNPLGL 184 Query: 311 TKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 + N Y +H T + F +R ++GC+R+ + D+ WL Sbjct: 185 FALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPSDI-EWLF 227 >gi|28901325|ref|NP_800980.1| hypothetical protein VPA1470 [Vibrio parahaemolyticus RIMD 2210633] gi|260362882|ref|ZP_05775751.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus K5030] gi|260880170|ref|ZP_05892525.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus AN-5034] gi|260895287|ref|ZP_05903783.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus Peru-466] gi|28809872|dbj|BAC62813.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085792|gb|EFO35487.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus Peru-466] gi|308092500|gb|EFO42195.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus AN-5034] gi|308111963|gb|EFO49503.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus K5030] Length = 308 Score = 96.3 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 42/168 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + +++N+ L G+ V V +GR+ R TP++ + I++ NP W P SI Sbjct: 100 PHQGIVINLAELRLYYFPEGEDVVHVFPVGIGRIGRDTPVMTTSISQKRPNPTWTPPASI 159 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + + G N + Sbjct: 160 RAE-----------------------------------YRAKGVDLPAVVPAGPDNPLGL 184 Query: 311 TKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 + N Y +H T + F +R ++GC+R+ + D+ WL Sbjct: 185 FALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPSDI-EWLF 227 >gi|330945267|gb|EGH46923.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 272 Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|89073704|ref|ZP_01160218.1| hypothetical protein SKA34_11185 [Photobacterium sp. SKA34] gi|89050479|gb|EAR55971.1| hypothetical protein SKA34_11185 [Photobacterium sp. SKA34] Length = 300 Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 43/182 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRS--TVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + ++VN+ L + +GRV R+TP + + IN+ + NP W P Sbjct: 88 DVAHKGIVVNLAELRLYFFPKDDASKVYIFPIGIGRVGRETPSMTTSINQKVKNPTWTPP 147 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI ++ ++ + G N Sbjct: 148 ASIRKE-----------------------------------HAAKGDILPAVVQAGPDNP 172 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + K+ + Y +H T + F +R + GC+R+ N D WL ++ Sbjct: 173 LGNYKMRLAYGHGEYLIHGTNKD--FGIGMR-VSGGCIRM-NPWD-VEWLFPHVALGTQV 227 Query: 367 HI 368 I Sbjct: 228 RI 229 >gi|330977562|gb|EGH77506.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 321 Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|289673230|ref|ZP_06494120.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. syringae FF5] Length = 311 Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 86 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 145 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 146 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 170 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 171 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 213 >gi|28869470|ref|NP_792089.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852712|gb|AAO55784.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 321 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPNVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|213968114|ref|ZP_03396259.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato T1] gi|301384911|ref|ZP_07233329.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato Max13] gi|302062889|ref|ZP_07254430.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato K40] gi|302135226|ref|ZP_07261216.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927094|gb|EEB60644.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato T1] gi|330875585|gb|EGH09734.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330968354|gb|EGH68614.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 321 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPNVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|146329591|ref|YP_001209829.1| hypothetical protein DNO_0937 [Dichelobacter nodosus VCS1703A] gi|146233061|gb|ABQ14039.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 296 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 41/185 (22%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+P L GK + + +GR D TP+ I NP W P S+ Sbjct: 82 PREGIVINLPEMRLYYFPEGKSLVYVYAIGIGREDWGTPLGVHTITEKRPNPTWTPPASL 141 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + + G N + Sbjct: 142 RAE-----------------------------------HAAKGDILPAVVEAGPNNPLGL 166 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 + + + +H T +P +R + GC+R+ + I++ Sbjct: 167 FAMRLSNP-SYLIHGTNKPW--GVGMR-VSHGCIRMF-PEGIKELFAMTPQGTKVNVIKQ 221 Query: 371 VVKTR 375 +K Sbjct: 222 EMKVG 226 >gi|71734528|ref|YP_274260.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289629142|ref|ZP_06462096.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298486557|ref|ZP_07004617.1| L,D-transpeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71555081|gb|AAZ34292.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159034|gb|EFI00095.1| L,D-transpeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324946|gb|EFW81018.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329100|gb|EFW85098.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867505|gb|EGH02214.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331010595|gb|EGH90651.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 321 Score = 96.3 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|330951750|gb|EGH52010.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae Cit 7] Length = 321 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|330888225|gb|EGH20886.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. mori str. 301020] Length = 321 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|330973775|gb|EGH73841.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. aceris str. M302273PT] Length = 321 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|302189952|ref|ZP_07266625.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. syringae 642] Length = 321 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|257486299|ref|ZP_05640340.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 94 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 153 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 154 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 178 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 179 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 221 >gi|148974051|ref|ZP_01811584.1| hypothetical protein VSWAT3_13027 [Vibrionales bacterium SWAT-3] gi|145965748|gb|EDK30996.1| hypothetical protein VSWAT3_13027 [Vibrionales bacterium SWAT-3] Length = 319 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 43/191 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + +++N+ L E K + V +GR+ R TP + ++I++ NP W Sbjct: 101 LILPDTPRKGIVINLAELRLYYFEPEKNQVHVFPVGIGRIGRDTPEMITKISQKRPNPTW 160 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P+SI ++ YL+ G Sbjct: 161 TPPKSIREE-----------YLEK------------------------GIELPKVVPAGP 185 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPT 362 N + + Y +H T + F +R +SGC+R+ D+ WL + + Sbjct: 186 ENPLGEYALRLAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-EWLFEQVSRG 240 Query: 363 WSRYHIEEVVK 373 I E +K Sbjct: 241 EQVTFINEPIK 251 >gi|118581595|ref|YP_902845.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] gi|118504305|gb|ABL00788.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] Length = 346 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 67/239 (28%), Gaps = 78/239 (32%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRV------DRQTPILHSRINRIMFNPYWVIPRS 249 +++NIP +L + GK+ V +G+ D TP R+ +P W +PRS Sbjct: 141 IVINIPDRTLYYFKEGKLTTSLPVALGQPQKGATYDWMTPTGKFRVVAKQTDPTWYVPRS 200 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I + + PG N + Sbjct: 201 IRSE-----------------------------------MEARGKDVKTVVPPGPRNPLG 225 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYH 367 I+ +H T P RF + GC+RV + D + +TP Sbjct: 226 KYAIKTSLP-GILIHSTTRPGSI---YRFASHGCIRVYPEQMKDFFNEVRVNTPGE---- 277 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISA--WSPKDSII--QFRDDIYGLDNVHVGIIPL 422 +Y ++ + + D YG V + + Sbjct: 278 ----------------------IIYQPVKLAVTEEGRVFLEVHHDAYGR-GVELHALAR 313 >gi|260769654|ref|ZP_05878587.1| hypothetical protein VFA_002712 [Vibrio furnissii CIP 102972] gi|260614992|gb|EEX40178.1| hypothetical protein VFA_002712 [Vibrio furnissii CIP 102972] gi|315182349|gb|ADT89262.1| hypothetical protein vfu_B01066 [Vibrio furnissii NCTC 11218] Length = 308 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 65/197 (32%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L E + V +GR+ R TP + + I++ NP W P+SI Q+ Sbjct: 96 IVVNLAELRLYYFEPETRKVHIFPVGIGRIGRDTPEMETVISQKRPNPTWTPPQSIRQE- 154 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 YL G N + + Sbjct: 155 ----------YLAK------------------------GIELPAVVPAGPENPLGEYALR 180 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 N Y +H T + F +R +SGC+R+ + D+ WL + + I Sbjct: 181 LGYGNGEYLIHGTNKD--FGIGMR-VSSGCIRM-DPKDI-EWLFQQVQRGEKVRIIN--- 232 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 233 --EPVKVALEPDRSVFV 247 >gi|66045310|ref|YP_235151.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. syringae B728a] gi|63256017|gb|AAY37113.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. syringae B728a] Length = 321 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|163800189|ref|ZP_02194090.1| hypothetical protein 1103602000595_AND4_05899 [Vibrio sp. AND4] gi|159175632|gb|EDP60426.1| hypothetical protein AND4_05899 [Vibrio sp. AND4] Length = 308 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 65/207 (31%), Gaps = 47/207 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + + +++N+ L V V +GR+ R TP + + I++ NP W Sbjct: 94 LILPDVPHKGIVINLAELRLYYFPPKQNVVHIFPVGIGRIGRDTPEMTTSISQKRPNPTW 153 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI + + + G Sbjct: 154 TPPSSIRAE-----------------------------------YKAKGIDLPAVVPAGP 178 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + + Y +H T + F +R +SGC+R+ + D+ WL Sbjct: 179 DNPLGMFALRLAYGHGEYLIHGTNKD--FGIGMR-VSSGCIRM-DPSDI-EWLFDKVRRG 233 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHF 390 + I + V L + V Sbjct: 234 EKVKIIN-----QPVKVTLEPDRSVFV 255 >gi|325131741|gb|EGC54443.1| ErfK/YbiS/YcfS/YnhG family [Neisseria meningitidis M6190] Length = 207 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 70/228 (30%), Gaps = 73/228 (32%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 107 R---------------------------------------GDGVKTIAAGPDNPLGPVFV 127 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNV 415 + V +Y A +D+ + FR D YG +N+ Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNL 207 >gi|307544802|ref|YP_003897281.1| ErfK/YbiS/YcfS/YnhG family protein [Halomonas elongata DSM 2581] gi|307216826|emb|CBV42096.1| ErfK/YbiS/YcfS/YnhG family protein [Halomonas elongata DSM 2581] Length = 396 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 46/174 (26%) Query: 190 KMGLRYVLVNIPAASLEAV---ENGKVGL--RSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + + +++N+ L ++G+ + VGR D +TP+ ++ I +++ NP W Sbjct: 147 DVPRKGIVINVAEMRLYYYPPAKDGEPRTVQTYPLGVGRQDWETPLGNTTITQMVKNPAW 206 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI Q+ ++ G Sbjct: 207 YPPESIRQE-----------------------------------HAAAGDPLPSVVPAGP 231 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 N + + K+ +H T +P +R + GCVR+ + L + Sbjct: 232 NNPLGTRKMRLGIP-GYLIHGTNKPE--GVGMR-VSHGCVRMLPDDAEALFDQI 281 >gi|156976350|ref|YP_001447256.1| hypothetical protein VIBHAR_05123 [Vibrio harveyi ATCC BAA-1116] gi|156527944|gb|ABU73029.1| hypothetical protein VIBHAR_05123 [Vibrio harveyi ATCC BAA-1116] Length = 308 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 65/207 (31%), Gaps = 47/207 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + + +++N+ L V V +GR+ R TP + + I++ NP W Sbjct: 94 LILPDVPHKGIVINLAELRLYYFPAKENVVHIFPVGIGRIGRDTPEMTTSISQKRPNPTW 153 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI + + + G Sbjct: 154 TPPSSIRAE-----------------------------------YKAKGIDLPAVVPAGP 178 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + + Y +H T + F +R +SGC+R+ + D+ WL Sbjct: 179 DNPLGMFALRLAYGHGEYLIHGTNKD--FGIGMR-VSSGCIRM-DPNDI-EWLFDKVRRG 233 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHF 390 + I + V L + V Sbjct: 234 EKVKIIN-----QPVKVTLEPDRSVFV 255 >gi|237803632|ref|ZP_04591217.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025614|gb|EGI05670.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 321 Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVIAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGMS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|258544154|ref|ZP_05704388.1| ErfK/YbiS/YcfS/YnhG family protein [Cardiobacterium hominis ATCC 15826] gi|258520596|gb|EEV89455.1| ErfK/YbiS/YcfS/YnhG family protein [Cardiobacterium hominis ATCC 15826] Length = 300 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+P L G+ V + +GR TP I NP W P Sbjct: 89 DAPREGIVINLPEMRLYYYPPGQNVVHVFAIGIGREGWATPKGILSIADKRANPTWTPPA 148 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI + ++ G N + Sbjct: 149 SIRAE-----------------------------------HAANGDPLPPVVPAGPDNPL 173 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + + +H T +P +R + GC+R+ I +L + T Sbjct: 174 GLFAMRLSNP-SYLLHGTNKPE--GVGMR-VSHGCIRLYPEGIEELFGMVAPGTK 224 >gi|262403202|ref|ZP_06079762.1| hypothetical protein VOA_001186 [Vibrio sp. RC586] gi|262350701|gb|EEY99834.1| hypothetical protein VOA_001186 [Vibrio sp. RC586] Length = 306 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + V +GR+ R TP++ + I+ NP W P S+ ++ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKNPTWTPPESVRRE- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N + + Sbjct: 154 ----------------------------------HKAKGDILPAVVPAGPDNPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLFQQVERGEKVRIIN--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 232 --EPIKVALEPDRSVFI 246 >gi|90422766|ref|YP_531136.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90104780|gb|ABD86817.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 329 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 74/268 (27%), Gaps = 34/268 (12%) Query: 114 LRERLIISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-PVD 170 L +L + D + F VE A+ + + L P + + D Sbjct: 45 LAVKLQVLLDRAHFSPGEIDGRFGENVEKALAAYAEANALPPGKALTPEIWAKLKANSGD 104 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV---ENGKVGLRSTVIVGRVDRQ 227 + Q + +K K+ + L E + + Sbjct: 105 PVLAQYTLTAQDLKGPFLAKLPAKM-EQMKTLKHLNYTGPKEALSERFHISQELLAELNP 163 Query: 228 TPILHSRIN--RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---------- 275 + + I+ P +P + ++ + + +D ++ Sbjct: 164 GQKFNRAGDAITIVSLPPEAMPTPATRLEVDKERQTVKAFAQDGSLLAFYPASVGSEEKP 223 Query: 276 --EKGKEVFVEEVDWNSPEPPNF---------IFRQDPGKINAMASTKIEFYSRNNTYMH 324 +V + + N P + F PG N + + I +H Sbjct: 224 TPSGALKVDTVDANPNYRYNPKYKFSGVKSKKPFNIKPGPNNPVGAMWIGLSEP-GYGIH 282 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDL 352 T +P + + GCVR+ N L Sbjct: 283 GTADPSRVSKSD---SHGCVRLTNWDVL 307 >gi|196231301|ref|ZP_03130160.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196224637|gb|EDY19148.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 322 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 85/302 (28%), Gaps = 71/302 (23%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS------------------STLEAM 165 L + +V A+K +Q HGL +G++D+ L+ + Sbjct: 46 LFGPGKIDGRPGEFVGKALKRYQRAHGLPETGVLDANIPIDSVYPVYTFYTFKDEDLKFV 105 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA--------SLEAVENGKVGLRS 217 Q ++ + LL+ + P +LEA++ G Sbjct: 106 GPSPTKPEEQCKLKYLPYASLLDFATERYHC---APEFLAKINKGVNLEALKPGDQIRVP 162 Query: 218 TVIVGRVDRQT--------PILHSRINRIMFNPYW-----------VIPRSIIQKDMMAL 258 V ++ P +R+ +I N +P I +M Sbjct: 163 NVEPFVIEDLPKQGFLPEKPEYKNRVIQIHRNEKLLDVMDGDALLATVP---ITPGIMGG 219 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 ++ + + ++ + G N + I ++ Sbjct: 220 GAKETPAGSWKILGIATSPTFRWDKGVLEEGKRTENFYNL--PAGPRNPVGVLWIGL-NK 276 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 +H T P R ++ GC+RV N W I +++ T Sbjct: 277 PGIGIHGTSNPQTIG---RAQSHGCMRVAN--------------WDVVRISKLITKGMTV 319 Query: 379 PV 380 + Sbjct: 320 II 321 >gi|134300529|ref|YP_001114025.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] gi|134053229|gb|ABO51200.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] Length = 315 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 71/261 (27%), Gaps = 78/261 (29%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+E L + + +D+ + A++ +Q H L G+VD T Sbjct: 51 MQGKDVVDLQEELKALNYY--NGPTNGIYDSLTQRALRKYQQDHYLKNDGVVDWETW--- 105 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 L +NL + E+ + +I+ Sbjct: 106 --------HSLALNLEKPVTKSEKTLPPTGD--------------------MAIIIDTTT 137 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 R+ +L FN P + + V Sbjct: 138 RKLTVLSDGKPYTQFNVACGKPSTPS----------------------PVGSWQVVHKAT 175 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCV 344 +W + + + +H T +P + + + GC+ Sbjct: 176 -NWGT----------------GFGTRWLGLNVPWGKYGIHGTNKPFSIGS---YASHGCI 215 Query: 345 RVRN--IIDLDVWLLKDTPTW 363 R+ N + L W+ K TP + Sbjct: 216 RMHNSSVEKLYPWIPKGTPVY 236 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ V ++ L G + F +E+ +K F+ +GL VDS Sbjct: 250 KKLVRGDRGADVFEVQRTLKRLGYY--EAQIDGIFGYSMEAGIKKFRKANGLPMDNFVDS 307 Query: 160 STLEAMN 166 +A+ Sbjct: 308 KMYKALG 314 >gi|269962801|ref|ZP_06177142.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832491|gb|EEZ86609.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 308 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 47/207 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + + +++N+ L V V +GR+ R TP + + I++ NP W Sbjct: 94 LILPDVPHKGIVINLAELRLYYFPAKENVVHVFPVGIGRIGRDTPEMTTSISQKRPNPTW 153 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI + + + G Sbjct: 154 TPPSSIRAE-----------------------------------YKAKGIDLPAVVPAGP 178 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + + Y +H T + F +R ++GC+R+ + D+ WL Sbjct: 179 DNPLGMFALRLAYGHGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPNDI-EWLFDKVRRG 233 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHF 390 + I + V L + V Sbjct: 234 EKVKIIN-----QPVKVTLEPDRSVFV 255 >gi|153008375|ref|YP_001369590.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151560263|gb|ABS13761.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 488 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 28/258 (10%), Positives = 65/258 (25%), Gaps = 30/258 (11%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI- 183 + + V+ A + G + +++ + + + + Sbjct: 225 ASPGVIDGRSGSNVDKAAAAYGELTGKSINPTDEAAVNAELEATGGPAFTEYTITNEDVG 284 Query: 184 KKLLEQKMGLRYVLVNIPAA-SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR-IMFN 241 ++ + +PA E + + + + N Sbjct: 285 RQYVASIPEDYAHKAQLPAMAYTSVTEMLGEKFHIDETYLKEINPGVNFNQPGSIVKIPN 344 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEE----------VDWN 289 + + + +Q Y + + + G ++ N Sbjct: 345 LGKPVRTKVARIIADKGRKQVRGYDEAGKLVVAYPSTIGSSDNPSPSGVVQVERIAINPN 404 Query: 290 SPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P F+Q PG + + I +H TPEP + Sbjct: 405 YTYNPKINFKQGNNDKVLTIPPGPNGPVGTVWIALSKP-TYGIHGTPEPSRIGKTS---S 460 Query: 341 SGCVRVRN--IIDLDVWL 356 GCVR+ N +L + Sbjct: 461 HGCVRLTNWDAEELAKLV 478 >gi|218675980|ref|YP_002394799.1| hypothetical protein VS_II0198 [Vibrio splendidus LGP32] gi|218324248|emb|CAV25529.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 300 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 47/207 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + +++N+ L E K + V +GRV R TP + ++I++ NP W Sbjct: 82 LILPDTPRKGIVINLAELRLYFFEPEKNQVHVFPVGIGRVGRDTPEMITKISQKRPNPTW 141 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI ++ YL+ G Sbjct: 142 TPPNSIRKE-----------YLEK------------------------GIELPKVVPAGP 166 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + Y +H T + F +R +SGC+R+ D+ WL + Sbjct: 167 ENPLGEYALRLAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-EWLFEQ---V 218 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHF 390 SR ++ + V L + V Sbjct: 219 SRGEQVTIID--EPIKVSLEPDRSVFV 243 >gi|86144591|ref|ZP_01062923.1| uncharacterized protein conserved in bacteria [Vibrio sp. MED222] gi|85837490|gb|EAQ55602.1| uncharacterized protein conserved in bacteria [Vibrio sp. MED222] Length = 296 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 70/207 (33%), Gaps = 47/207 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + +++N+ L E K + V +GRV R TP + ++I++ NP W Sbjct: 78 LILPDTPRKGIVINLAELRLYFFEPEKNQVHVFPVGIGRVGRDTPEMITKISQKRPNPTW 137 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI ++ YL+ G Sbjct: 138 TPPNSIRKE-----------YLEK------------------------GIELPKVVPAGP 162 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + Y +H T + F +R +SGC+R+ D+ WL + Sbjct: 163 ENPLGEYALRLAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-EWLFEQ---V 214 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHF 390 SR ++ + V L + V Sbjct: 215 SRGEQVTIID--EPIKVSLEPDRSVFV 239 >gi|330988430|gb|EGH86533.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 321 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 42/167 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + VGR +PI +++ NP W P SI Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPDVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 K +H + + F +R + GC R+ N+++L Sbjct: 181 FKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|307293274|ref|ZP_07573120.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] gi|306881340|gb|EFN12556.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] Length = 362 Score = 94.7 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 37/305 (12%), Positives = 75/305 (24%), Gaps = 73/305 (23%) Query: 124 LDPSKGLSVAFDAY----VESAVKLFQMRHGLDPSGMVDSSTLEAM---NVPVDLRIRQL 176 LD + D +A+K FQ GL +G D +T + + ++ Sbjct: 71 LDRAGFSPGVLDGKEGMSFTTALKGFQQARGLPATGQYDEATARTLMGDRPQPATWLVKI 130 Query: 177 QVNLMRIKKL-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + + + + + L +E + V Sbjct: 131 PTGFAKGPFFAVPKDLNDQAQLP--ALGYRNLLEKLAERFHTRPEVLLALNPPNTKVGAG 188 Query: 236 NRIMFNPYWVIPRSIIQKD-----------------------MMALLRQDPQYLKDNNIH 272 I P + I+ D ++ + N Sbjct: 189 ATIRVPAIANQPVARIEGDERGWGAMLASLGVAKDQPQADHIVVDKSDGVLRVYDAQNRL 248 Query: 273 MI---DEKGKEVFVEEVD-------------------WNSPEPPNFIFRQDPGKINAMAS 310 + G + + + + PG + Sbjct: 249 IAQFPATMGSQHDPLPIGTWEIKGLSRNPDFHYNPDLFWDASSSDQKAVLKPGPNGPVGV 308 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 I+ + +H TPEP R E+ GC+R+ N W + + Sbjct: 309 VWIDLSKPH-YGIHGTPEPQTIG---RAESHGCIRLTN--------------WDAARLAQ 350 Query: 371 VVKTR 375 +V++ Sbjct: 351 MVQSG 355 >gi|291458271|ref|ZP_06597661.1| putative peptidoglycan binding domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418804|gb|EFE92523.1| putative peptidoglycan binding domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 570 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 10/158 (6%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L + V++ ++ + +++ VD SK + Sbjct: 117 LAPVNLTVGVINSVVRDLQQRLMD----LGYMDVDEPTTYYGDATSKAVQYFQRQVGMPM 172 Query: 86 QDILSRGGWPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 I W L P LG + ++ RL G L + ++ +FDA E+ Sbjct: 173 DGITGVSTWDALMADSAPHYAAKLGFQGNDITNVQYRLYNLGYLTEASQINGSFDAVTET 232 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 AVK Q +GL G V ST + + +++ + + Sbjct: 233 AVKKMQEVNGLKVDGTVGQST-DELLYSDNVKANIIAL 269 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 19/156 (12%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 L ++ I +I+ + ++ + + A + + T Sbjct: 256 LLYSDNVKANIIALGEQSDIVKKYQARLIALGYMSGSADGN---------FGQSTQNAIR 306 Query: 80 KAIAFYQDILSRGGWPEL-------PIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + I+ P+ +P + LG S V L++ L G L Sbjct: 307 AFQSRNDQIVDGYLGPDTRASLDSDSAKPYGMRLGEQSDEVANLQKLLAKYGYLPQE-KA 365 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S F + AV FQ R+GL+ GM + TL + Sbjct: 366 SGYFGELTKQAVADFQSRNGLNADGMAGAQTLAKLG 401 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + LG S V++ + RLI G + S F ++A++ FQ R+ G Sbjct: 262 VKANIIALGEQSDIVKKYQARLIALGYMSGSA--DGNFGQSTQNAIRAFQSRNDQIVDGY 319 Query: 157 VDSSTLEAMNVPVDLR 172 + T +++ Sbjct: 320 LGPDTRASLDSDSAKP 335 >gi|153831567|ref|ZP_01984234.1| ErfK/YbiS/YcfS/YnhG [Vibrio harveyi HY01] gi|148872077|gb|EDL70894.1| ErfK/YbiS/YcfS/YnhG [Vibrio harveyi HY01] Length = 308 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 47/207 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L+ + + +++N+ L V V +GR+ R TP + + I++ NP W Sbjct: 94 LILPDVPHKGIVINLAELRLYYFPAKENVVHIFPVGIGRIGRDTPEMTTSISQKRPNPTW 153 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI + + + G Sbjct: 154 TPPSSIRAE-----------------------------------YKAKGIDLPAVVPAGP 178 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + + Y +H T + F +R ++GC+R+ + D+ WL Sbjct: 179 DNPLGMFALRLAYGHGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPNDI-EWLFDKVRRG 233 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHF 390 + I + V L + V Sbjct: 234 EKVKIIN-----QPVKVTLEPDRSVFV 255 >gi|49083720|gb|AAT51122.1| PA2854 [synthetic construct] Length = 324 Score = 94.3 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 40/160 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V++N+ L G+ V + +GR +PI ++RI +P W P SI Sbjct: 94 PREGVVINLAEYRLYYYPKGQNVVHTYPLGIGREGWGSPIANTRITAKTKDPAWYPPASI 153 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + PG N + Sbjct: 154 RAE-----------------------------------HAADGDPLPTVVPPGPDNPLGP 178 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 K+ +H + + F R + GC R+ N Sbjct: 179 YKLTLGVP-GYLIHGSNKK--FGIGTRT-SHGCFRMYNAD 214 >gi|15598050|ref|NP_251544.1| hypothetical protein PA2854 [Pseudomonas aeruginosa PAO1] gi|107102403|ref|ZP_01366321.1| hypothetical protein PaerPA_01003465 [Pseudomonas aeruginosa PACS2] gi|116050857|ref|YP_790320.1| hypothetical protein PA14_27180 [Pseudomonas aeruginosa UCBPP-PA14] gi|218890947|ref|YP_002439813.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa LESB58] gi|254235841|ref|ZP_04929164.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254241520|ref|ZP_04934842.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296388659|ref|ZP_06878134.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa PAb1] gi|313108000|ref|ZP_07794167.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa 39016] gi|9948942|gb|AAG06242.1|AE004712_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115586078|gb|ABJ12093.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126167772|gb|EAZ53283.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126194898|gb|EAZ58961.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218771172|emb|CAW26937.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa LESB58] gi|310880669|gb|EFQ39263.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa 39016] Length = 323 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 40/160 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V++N+ L G+ V + +GR +PI ++RI +P W P SI Sbjct: 94 PREGVVINLAEYRLYYYPKGQNVVHTYPLGIGREGWGSPIANTRITAKTKDPAWYPPASI 153 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + PG N + Sbjct: 154 RAE-----------------------------------HAADGDPLPTVVPPGPDNPLGP 178 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 K+ +H + + F R + GC R+ N Sbjct: 179 YKLTLGVP-GYLIHGSNKK--FGIGTRT-SHGCFRMYNAD 214 >gi|269104415|ref|ZP_06157111.1| hypothetical protein VDA_000572 [Photobacterium damselae subsp. damselae CIP 102761] gi|268161055|gb|EEZ39552.1| hypothetical protein VDA_000572 [Photobacterium damselae subsp. damselae CIP 102761] Length = 300 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 41/181 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRS--TVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + V +N+ L + +GRV R+TP + + I++ + +P W P Sbjct: 88 NVPHNGVTINLAELRLYYFPKDDPSKVYVFPIGIGRVGRETPSMTTSISQKIRHPTWT-P 146 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + I+K+ A G N Sbjct: 147 TANIRKEYAAK----------------------------------GVTLPPVVAAGPNNP 172 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + + Y+ + F +R +SGC+R+ N D+ WL P + Sbjct: 173 LGDYAMRLAYGHGEYLIHSTNKD-FGIGMR-VSSGCIRM-NPWDI-EWLFPQIPKGTPVR 228 Query: 368 I 368 I Sbjct: 229 I 229 >gi|238020377|ref|ZP_04600803.1| hypothetical protein GCWU000324_00257 [Kingella oralis ATCC 51147] gi|237867357|gb|EEP68363.1| hypothetical protein GCWU000324_00257 [Kingella oralis ATCC 51147] Length = 331 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 67/232 (28%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 V++NIP L ++G + V VG+ QT I +I FNP W IP SI ++ Sbjct: 50 YQVVINIPQQRLFLFKDGSLKKVYPVGVGKAMSQTNIGEHKIGAKAFNPTWHIPLSIQKE 109 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + PG N + + Sbjct: 110 R---------------------------------------GDGVKSVPPGPKNPLGPVFV 130 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +H T P + GCVR+++ L + + Sbjct: 131 RLGNPKLGLGIHGTSNPASV---PGVVSHGCVRMKSPDAL--------------EFAKTI 173 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI--IQFRDDIYGLDNVHVGIIPL 422 T V + ++ + D Y + + Sbjct: 174 HTGSPATVS-YERIALN-------QDDAGNLWLAVFRDPYKKGALKTSTLKQ 217 >gi|261251523|ref|ZP_05944097.1| hypothetical protein VIA_001544 [Vibrio orientalis CIP 102891] gi|260938396|gb|EEX94384.1| hypothetical protein VIA_001544 [Vibrio orientalis CIP 102891] Length = 301 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L E + V +GRV R TP + + I++ NP W P SI ++ Sbjct: 93 IVINLAELRLYYFEPEINKVHIFPVGIGRVGRDTPEMKTTISQKRPNPTWTPPTSIRKE- 151 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N + + Sbjct: 152 ----------------------------------YAAKGIELPAVVPAGPENPLGEYALR 177 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T + F +R +SGC+R+ + D+ WL + + Sbjct: 178 LSYGAGDYLIHGTNKD--FGIGLR-VSSGCIRM-DPKDI-EWLFPQVKLGEKVRVIN--- 229 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 --EPIKVALEPDRSVFL 244 >gi|167032930|ref|YP_001668161.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida GB-1] gi|166859418|gb|ABY97825.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida GB-1] Length = 325 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L G+ V + +GR +PI +++I NP W P SI Sbjct: 96 PREGIVINLAEYRLYYFPKGQNVVHTFPLGIGREGWGSPIANTKITAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ ++ + G N + Sbjct: 156 RKE-----------------------------------HAADGDILPAVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K +H + + F +R + GC R+ N+++L + TP Sbjct: 181 FKFTLGVP-GYLIHGSNKK--FGIGMRT-SHGCFRMLNNNVLELSKMVPVGTP 229 >gi|90413965|ref|ZP_01221950.1| hypothetical protein P3TCK_07866 [Photobacterium profundum 3TCK] gi|90325027|gb|EAS41542.1| hypothetical protein P3TCK_07866 [Photobacterium profundum 3TCK] Length = 301 Score = 93.9 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 95/267 (35%), Gaps = 52/267 (19%) Query: 115 RERLIISGDLDPSKGLSVAF-----DAYVESAVKLFQMRHG-----LDPSGMVDSSTLEA 164 R L++ L + ++ + D+ + V+ +++ G + V L A Sbjct: 3 RSILLVLTCLASTAANAIEYQLPNDDSNIVGTVEYYEVAKGDSLADIANKYNVGFLALLA 62 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVG 222 N VD + L K++ + + +++N+ L ++ + + +G Sbjct: 63 ANKGVDPFLPTPGQLLTVPTKVILPNVKRKGIIINLAELRLYYFPEDDKSIVYIFPIGIG 122 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 RV R TP + +++++ + NP W +I ++ Y + +I + Sbjct: 123 RVGRATPNMITKVSQKIENPTWTPTANIRKE-----------YREKKDIEL--------- 162 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETS 341 G N + + Y +H T + F +R +S Sbjct: 163 --------------PAVVPAGPENPLGEYAMRLAYSRGEYLIHGTNKD--FGIGMR-VSS 205 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHI 368 GC+R+ N D+ WL P + I Sbjct: 206 GCIRM-NPWDI-EWLFPQVPRGTSVQI 230 >gi|113475770|ref|YP_721831.1| ErfK/YbiS/YcfS/YnhG [Trichodesmium erythraeum IMS101] gi|110166818|gb|ABG51358.1| ErfK/YbiS/YcfS/YnhG [Trichodesmium erythraeum IMS101] Length = 219 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 58/218 (26%) Query: 146 QMRHG---LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 Q +G + +VD++ + + ++ + + + + KL + +++ + Sbjct: 43 QQVYGYTPIKNKSVVDTNGKKLIAKTPKIKPKSITIKKA-LNKLYIKPNETISLVIKLSD 101 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + +N ++ + +G+ +TP ++ + + NP W P + +++ Sbjct: 102 RRVYVYKNDQLKTSYPIAIGKEGWETPTGTHKVIQKIPNPSWTHPFT---GEIIP----- 153 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNN 320 PG N + I F+ N Sbjct: 154 ---------------------------------------PGPENPLGERWIGFWTDGTNY 174 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 H TP + GCVR+ ++++DL + Sbjct: 175 IGFHGTPNEETVGQ---AASHGCVRMFNQDVLDLFEKV 209 >gi|92109380|ref|YP_571668.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gi|91802462|gb|ABE64836.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 320 Score = 93.6 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 68/261 (26%), Gaps = 31/261 (11%) Query: 117 RLIISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 RL + D + F + A++ ++ L S V + I Sbjct: 27 RLQVLLDRAHFSPGEIDGVFGENAKKALRAYEEAQQLPSSDNVSVEAWRKLATDDRPVIA 86 Query: 175 QLQVNLMRIKKLLEQKMGLR-YVLVNIPA-ASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + I K+ + + IP + + A E + + + Sbjct: 87 NHTIMDRDIAGPFLHKLPAKLEEMKGIPKLSYVSAREGLAEKFHVSEDLLVALNPGRHID 146 Query: 233 SRINRIMFNPYWV--IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVE---- 284 I+ IP+ + ++ + + K N + G E Sbjct: 147 RAGVTIVVIDTGTGQIPKKAAKVEVDKKRQTVKLFDKSNGLIGFYPATVGSEEKPSLSGT 206 Query: 285 -------EVDWNSPEPPNF--------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 P + F PG N + + I +H T P Sbjct: 207 LKVTTVKRNPTYHYNPAYYFGGVHSRKPFTIAPGPNNPVGTVWISLSGE-GYGVHGTSSP 265 Query: 330 ILFNNVVRFETSGCVRVRNII 350 + + GC+R+ N Sbjct: 266 GKVSKSE---SHGCIRLTNWD 283 >gi|300114963|ref|YP_003761538.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus watsonii C-113] gi|299540900|gb|ADJ29217.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus watsonii C-113] Length = 356 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 46/177 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-----VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 R +++N+ L + + +GR TP+ + + NP WV Sbjct: 102 PRRGIVINLAEMRLYYFPEPSSAQPSTVVTHPIGIGREGWSTPLGRTSVISKKKNPAWVP 161 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + ++ + R PG N Sbjct: 162 PESIRAE-----------------------------------HAADGNPLPKRVPPGPDN 186 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + +H T P +R + GC+R+ +I+ L + TP Sbjct: 187 PLGKFAMRLGMP-GYLIHGTNRPW--GVGMR-VSHGCIRLYPEDILGLFSQVKVGTP 239 >gi|77460233|ref|YP_349740.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas fluorescens Pf0-1] gi|77384236|gb|ABA75749.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 323 Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L G+ V + +GR +PI H+ I NP W P SI Sbjct: 96 PREGIVINLAEYRLYYYPKGRNVVYTFPLGIGREGWGSPIAHTTITAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPNVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHI 368 K + +H + + F +R + GC R+ N++++ + T Sbjct: 181 FKFTLGTP-GYLIHGSNKK--FGIGMRT-SHGCFRMFNNNVLEMASMVPVGTSVRILNDA 236 Query: 369 EEVVKTRKTTPVKLATEV 386 + ++ ++ T + Sbjct: 237 YKFGRSGGKIYLEAHTPI 254 >gi|323494305|ref|ZP_08099417.1| hypothetical protein VIBR0546_07107 [Vibrio brasiliensis LMG 20546] gi|323311468|gb|EGA64620.1| hypothetical protein VIBR0546_07107 [Vibrio brasiliensis LMG 20546] Length = 301 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 47/203 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + +++N+ L E + V +GRV R TP + ++I++ NP W P Sbjct: 87 NVERQGIVINLAELRLYYFEPEINKVHIFPVGIGRVGRDTPEMVTKISQKRPNPTWTPPA 146 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI +K+ +A G N + Sbjct: 147 SI-RKEYLAK----------------------------------GIELPAVVPAGPENPL 171 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + Y +H T + F +R +SGC+R+ + D+ WL + Sbjct: 172 GEYALRLAHGAGDYLIHGTNKD--FGIGLR-VSSGCIRM-DPKDI-EWLFPQVKLGEQVR 226 Query: 368 IEEVVKTRKTTPVKLATEVPVHF 390 + + V L + V Sbjct: 227 VIN-----EPIKVALEPDRSVFL 244 >gi|92113690|ref|YP_573618.1| ErfK/YbiS/YcfS/YnhG [Chromohalobacter salexigens DSM 3043] gi|91796780|gb|ABE58919.1| ErfK/YbiS/YcfS/YnhG [Chromohalobacter salexigens DSM 3043] Length = 387 Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 58/179 (32%), Gaps = 46/179 (25%) Query: 190 KMGLRYVLVNIPAASLEAV---ENGKVGL--RSTVIVGRVDRQTPILHSRINRIMFNPYW 244 V+VNIP L + G+ + VGR+D TP+ +RI NP W Sbjct: 134 DTPYEGVVVNIPEMRLYYYPPRKEGEPQRVETYAISVGRMDWSTPLGETRITAKQENPPW 193 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P+SII++ ++ + PG Sbjct: 194 YPPQSIIEE-----------------------------------HAADGRELPDVVPPGP 218 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 N + K+ +H T P +R T GC+R+ ++ L L T Sbjct: 219 DNPLGKYKMRLGLP-GYLIHGTNRPQ--GVGMR-VTHGCIRMFPEDVEHLFGQLPVGTK 273 >gi|170749343|ref|YP_001755603.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170655865|gb|ACB24920.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 370 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 30/292 (10%), Positives = 66/292 (22%), Gaps = 44/292 (15%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + + L + + A+ F + GL S + + + Sbjct: 79 DPLIVKAQVLLDRAHFYP--GAIDGRKGDNYRHALSAFAVAQGLPASEDLTPEIWDKLQA 136 Query: 168 PVDLRIRQ-LQVNLMRIKKLLEQKMGLRYVLVN--IPAASLEAVENGKVGLRSTVIVGRV 224 D + +++ + E + + Sbjct: 137 TSDKPAVTDYTLTESDAAGPYVERIPPKMEEQAELKTLGYTNPREMLAERFHMSRDLVSA 196 Query: 225 DRQTPILHSRINRIMFNPY------------WVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L I + + ++ R + D + Sbjct: 197 LNPGKPLDKAGTTIAVAAVEPMGTDKPKAKDLPQEPKVERIEVDKTSRDVRAFGADGKLL 256 Query: 273 MID------------EKGKEVFVEEVDWNSPEPPNFIFR---------QDPGKINAMAST 311 +V D + P + F+ G N + Sbjct: 257 AYYPASIGSSEKPAPSGETKVKGVAFDPDYTYNPKYAFKGVKAQHKFTIQSGPNNPVGLV 316 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTP 361 I+ + +H TPEP + GC+R+ N DL + + Sbjct: 317 WIDLAIP-SYGIHGTPEPEKVGKTE---SHGCIRLTNWNARDLAAHVTRGAK 364 >gi|152986703|ref|YP_001347671.1| hypothetical protein PSPA7_2300 [Pseudomonas aeruginosa PA7] gi|150961861|gb|ABR83886.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 323 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 40/160 (25%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V++N+ L G+ V + +GR +PI ++RI +P W P SI Sbjct: 94 PREGVVINLAEYRLYYYPKGQDVVHTYPLGIGREGWGSPIANTRITAKTKDPAWYPPASI 153 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + PG N + Sbjct: 154 RAE-----------------------------------HAADGDPLPTVVPPGPDNPLGP 178 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 K+ +H + + F R + GC R+ N Sbjct: 179 YKLTLGVP-GYLIHGSNKK--FGIGTRT-SHGCFRMYNAD 214 >gi|183179739|ref|ZP_02957950.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|183013150|gb|EDT88450.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 305 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + V +GR+ R TP++ + I+ P W P SI ++ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASIRKE- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N + + Sbjct: 154 ----------------------------------YKAKGIDLPPVVPAGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGVGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIIN--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 232 --EPIKVALEPDRSVFI 246 >gi|153212801|ref|ZP_01948437.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116314|gb|EAY35134.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 306 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + V +GR+ R TP++ + I+ P W P SI ++ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASIRKE- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N + + Sbjct: 154 ----------------------------------YKAKGIDLPPVVPAGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGVGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIIN--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 232 --EPIKVALEPDRSVFI 246 >gi|226944399|ref|YP_002799472.1| ErfK/YbiS/YcfS/YnhG family protein [Azotobacter vinelandii DJ] gi|226719326|gb|ACO78497.1| ErfK/YbiS/YcfS/YnhG family protein [Azotobacter vinelandii DJ] Length = 317 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + ++ V + +GR +P+ +RI + +P W P+SI Sbjct: 92 PREGIIINLAEYRMYYFPKDQNVVHTYPLGIGREGWGSPVAETRITGKIKDPAWYPPKSI 151 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ ++ + G N + Sbjct: 152 REE-----------------------------------HAADGDPLPTVVPAGPDNPLGP 176 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K +H + + F +R + GC R+ N++ L + T Sbjct: 177 FKFTLGLS-GYLIHGSNKK--FGIGMR-VSHGCFRMLNHNVLQLADMVPVGTK 225 >gi|15600829|ref|NP_232459.1| hypothetical protein VCA0058 [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585891|ref|ZP_01675684.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121730222|ref|ZP_01682608.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147671464|ref|YP_001214920.1| hypothetical protein VC0395_0079 [Vibrio cholerae O395] gi|153820063|ref|ZP_01972730.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153827505|ref|ZP_01980172.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|227811686|ref|YP_002811696.1| hypothetical protein VCM66_A0055 [Vibrio cholerae M66-2] gi|229506766|ref|ZP_04396275.1| hypothetical protein VCF_001990 [Vibrio cholerae BX 330286] gi|229510439|ref|ZP_04399919.1| hypothetical protein VCE_001845 [Vibrio cholerae B33] gi|229514568|ref|ZP_04404029.1| hypothetical protein VCB_002218 [Vibrio cholerae TMA 21] gi|229517430|ref|ZP_04406875.1| hypothetical protein VCC_001453 [Vibrio cholerae RC9] gi|229522730|ref|ZP_04412146.1| hypothetical protein VIF_003296 [Vibrio cholerae TM 11079-80] gi|229526305|ref|ZP_04415709.1| hypothetical protein VCA_000424 [Vibrio cholerae bv. albensis VL426] gi|229527953|ref|ZP_04417344.1| hypothetical protein VCG_001031 [Vibrio cholerae 12129(1)] gi|229605240|ref|YP_002875944.1| hypothetical protein VCD_000180 [Vibrio cholerae MJ-1236] gi|254284784|ref|ZP_04959751.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254850325|ref|ZP_05239675.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255746115|ref|ZP_05420062.1| hypothetical protein VCH_002489 [Vibrio cholera CIRS 101] gi|262158602|ref|ZP_06029716.1| hypothetical protein VIG_001835 [Vibrio cholerae INDRE 91/1] gi|262168986|ref|ZP_06036680.1| hypothetical protein VIJ_002194 [Vibrio cholerae RC27] gi|297579802|ref|ZP_06941729.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298499923|ref|ZP_07009729.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9657441|gb|AAF95972.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549827|gb|EAX59847.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121628026|gb|EAX60576.1| conserved hypothetical protein [Vibrio cholerae V52] gi|126509398|gb|EAZ71992.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|146313847|gb|ABQ18387.1| conserved hypothetical protein [Vibrio cholerae O395] gi|149738568|gb|EDM52923.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150425569|gb|EDN17345.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227010828|gb|ACP07039.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227014690|gb|ACP10899.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229334315|gb|EEN99800.1| hypothetical protein VCG_001031 [Vibrio cholerae 12129(1)] gi|229336463|gb|EEO01481.1| hypothetical protein VCA_000424 [Vibrio cholerae bv. albensis VL426] gi|229340715|gb|EEO05721.1| hypothetical protein VIF_003296 [Vibrio cholerae TM 11079-80] gi|229345466|gb|EEO10439.1| hypothetical protein VCC_001453 [Vibrio cholerae RC9] gi|229348548|gb|EEO13506.1| hypothetical protein VCB_002218 [Vibrio cholerae TMA 21] gi|229352884|gb|EEO17824.1| hypothetical protein VCE_001845 [Vibrio cholerae B33] gi|229357117|gb|EEO22035.1| hypothetical protein VCF_001990 [Vibrio cholerae BX 330286] gi|229371726|gb|ACQ62148.1| hypothetical protein VCD_000180 [Vibrio cholerae MJ-1236] gi|254846030|gb|EET24444.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255735869|gb|EET91267.1| hypothetical protein VCH_002489 [Vibrio cholera CIRS 101] gi|262022685|gb|EEY41392.1| hypothetical protein VIJ_002194 [Vibrio cholerae RC27] gi|262029482|gb|EEY48132.1| hypothetical protein VIG_001835 [Vibrio cholerae INDRE 91/1] gi|297535448|gb|EFH74282.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297541904|gb|EFH77955.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327485292|gb|AEA79698.1| hypothetical protein VCLMA_B0050 [Vibrio cholerae LMA3894-4] Length = 306 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + V +GR+ R TP++ + I+ P W P SI ++ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASIRKE- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N + + Sbjct: 154 ----------------------------------YKAKGIDLPPVVPAGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGVGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIIN--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 232 --EPIKVALEPDRSVFI 246 >gi|153831250|ref|ZP_01983917.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|254224595|ref|ZP_04918211.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125622658|gb|EAZ50976.1| conserved hypothetical protein [Vibrio cholerae V51] gi|148873270|gb|EDL71405.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 306 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + V +GR+ R TP++ + I+ P W P SI ++ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASIRKE- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N + + Sbjct: 154 ----------------------------------YKAKGIDLPPVVPAGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGVGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIIN--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 232 --EPIKVALEPDRSVFI 246 >gi|262164646|ref|ZP_06032384.1| hypothetical protein VMA_001090 [Vibrio mimicus VM223] gi|262027026|gb|EEY45693.1| hypothetical protein VMA_001090 [Vibrio mimicus VM223] Length = 306 Score = 92.8 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + V +GR+ R TP++ + I+ NP W P SI + Sbjct: 95 IVINLAELRLYYFRPDEGKVHIFPVGIGRIGRDTPVMQTSISGKRKNPTWTPPASIRSE- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + G N + + Sbjct: 154 ----------------------------------YKAKGIELPAVVPSGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I + Sbjct: 180 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIID--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + + L + V Sbjct: 232 --EPIKIALEPDRSVFI 246 >gi|104781033|ref|YP_607531.1| hypothetical protein PSEEN1888 [Pseudomonas entomophila L48] gi|95110020|emb|CAK14725.1| conserved hypothetical protein; ErfK/YbiS/YcfS/YnhG family [Pseudomonas entomophila L48] Length = 325 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V++N+ L G+ V + +GR +PI +++I NP W P SI Sbjct: 96 PREGVVINLAEYRLYYYPKGQGVVYTFPLGIGREGWGSPIANTKITAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 RAE-----------------------------------HAADGDILPAVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K +H + + F +R + GC R+ N+++L + TP Sbjct: 181 FKFTLGVP-GYLIHGSNKK--FGIGMRT-SHGCFRMLNNNVLELSKMVPVGTP 229 >gi|258624238|ref|ZP_05719187.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258583389|gb|EEW08189.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 306 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + V +GR+ R TP++ + I+ NP W P SI + Sbjct: 95 IVINLAELRLYYFRPDEGKVHIFPVGIGRIGRDTPVMQTSISGKRKNPTWTPPASIRSE- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + G N + + Sbjct: 154 ----------------------------------YKAKGIELPAVVPSGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I + Sbjct: 180 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIID--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + + L + V Sbjct: 232 --EPIKIALEPDRSVFI 246 >gi|258622172|ref|ZP_05717198.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262173168|ref|ZP_06040845.1| hypothetical protein VII_000255 [Vibrio mimicus MB-451] gi|258585496|gb|EEW10219.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261890526|gb|EEY36513.1| hypothetical protein VII_000255 [Vibrio mimicus MB-451] Length = 306 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + V +GR+ R TP++ + I+ NP W P SI + Sbjct: 95 IVINLAELRLYYFRPDEGKVHIFPVGIGRIGRDTPVMQTSISGKRKNPTWTPPASIRSE- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + G N + + Sbjct: 154 ----------------------------------YKAKGIELPAVVPSGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I + Sbjct: 180 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIID--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + + L + V Sbjct: 232 --EPIKIALEPDRSVFI 246 >gi|313499594|gb|ADR60960.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida BIRD-1] Length = 325 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + +GR +PI +++I NP W P SI Sbjct: 96 PREGIVINLAEYRMYYFPKGESVVYTFPLGIGREGWGSPIANTKITAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ ++ + G N + Sbjct: 156 RKE-----------------------------------HAEDGDILPTVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K +H + + F +R + GC R+ N+++L + TP Sbjct: 181 FKFTLGVP-GYLIHGSNKK--FGIGMRT-SHGCFRMFNNNVLELSKMVPVGTP 229 >gi|148548657|ref|YP_001268759.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida F1] gi|148512715|gb|ABQ79575.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida F1] Length = 325 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + +GR +PI +++I NP W P SI Sbjct: 96 PREGIVINLAEYRMYYFPKGESVVYTFPLGIGREGWGSPIANTKITAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ ++ + G N + Sbjct: 156 RKE-----------------------------------HAEDGDILPTVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K +H + + F +R + GC R+ N+++L + TP Sbjct: 181 FKFTLGVP-GYLIHGSNKK--FGIGMRT-SHGCFRMLNNNVLELSKMVPVGTP 229 >gi|26989044|ref|NP_744469.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida KT2440] gi|24983869|gb|AAN67933.1|AE016425_10 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 325 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ + G+ V + +GR +PI ++RI NP W P SI Sbjct: 96 PREGIVINLAEYRMYYFPKGESVVYTFPLGIGREGWGSPIANTRITAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ ++ + G N + Sbjct: 156 RKE-----------------------------------HAEDGDILPTVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K +H + + F +R + GC R+ N+++L + TP Sbjct: 181 FKFTLGVP-GYLIHGSNKK--FGIGMRT-SHGCFRMFNNNVLELSKMVPVGTP 229 >gi|260776994|ref|ZP_05885888.1| hypothetical protein VIC_002384 [Vibrio coralliilyticus ATCC BAA-450] gi|260606660|gb|EEX32934.1| hypothetical protein VIC_002384 [Vibrio coralliilyticus ATCC BAA-450] Length = 274 Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 67/203 (33%), Gaps = 47/203 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++ +++N+ L + K + V +GR+ R TP + + I++ NP W P Sbjct: 58 QVPREGIVINLAELRLYYFQPEKNLVHIFPVGIGRIGRDTPEMVTSISQKRPNPTWTPPA 117 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI ++ YL+ G N + Sbjct: 118 SIRKE-----------YLEK------------------------GIELPRVVPAGPENPL 142 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + Y +H T + F +R +SGC+R+ N D+ WL P Sbjct: 143 GEYAMRLAYGVGDYLIHGTNKD--FGIGLR-VSSGCIRM-NPKDI-DWLF---PKVKLGE 194 Query: 368 IEEVVKTRKTTPVKLATEVPVHF 390 V+ + + L + V Sbjct: 195 KVRVIN--EPVKIALEPDRSVFL 215 >gi|110635323|ref|YP_675531.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110286307|gb|ABG64366.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 490 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 67/305 (21%), Gaps = 48/305 (15%) Query: 104 LGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G S V + L +G + V A+ + G D Sbjct: 206 PGARRASEDVAAYQILLDRAG--VSPGVIDGHIGDNVNKAIDAYYEVTGQRLK-TYDKEW 262 Query: 162 LEA-MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA--SLEAVENGKVGLRST 218 +EA + + + + Y E Sbjct: 263 IEAELQRTGGPAFTEYTITSEDAAGPFIASVPEDYSEKAQLERLSYTRVSEMLAERFHMD 322 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + I +S + + + R+ + + + Sbjct: 323 EKFLIDLNPGANFNRPGTIIKVANPGQPAKSAVARIVADKSRKQVRLFDEGGRLIGVYPA 382 Query: 279 KE-------------VFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFY 316 V ++ N P F+Q PG + S I Sbjct: 383 TIGSSDTPSPTGIHQVERVALNPNYTYDPRKNFKQGNNDKVLTIPPGPNGPVGSVWIALS 442 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 +H TPEP + GCVR+ N W + + VK Sbjct: 443 KP-TYGIHGTPEPSKIGKTY---SHGCVRLTN--------------WDAQELAKRVKPGV 484 Query: 377 TTPVK 381 T Sbjct: 485 TVEFT 489 >gi|255020594|ref|ZP_05292657.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] gi|254969979|gb|EET27478.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] Length = 306 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 44/177 (24%) Query: 190 KMGLRYVLVNIPAASLEAV---ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +++N+ A L +NGKV + + +GR +TP+ +++ + +P W Sbjct: 91 DAPRQGIVINLAAMRLFYYPEGKNGKVVVSYPLGIGREGWRTPLGKTQVTGKVKDPTWTP 150 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + ++ + G N Sbjct: 151 PASIRAE-----------------------------------HAEKGEILPDVVPAGPQN 175 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + +H T +P +R + GC+R+ +I L + TP Sbjct: 176 PLGQYALRLGWP-GYLIHGTDKPW--GVGMR-VSHGCIRLYPEDIAKLFAAVPAGTP 228 >gi|224826667|ref|ZP_03699768.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] gi|224601268|gb|EEG07450.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] Length = 305 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 64/225 (28%), Gaps = 67/225 (29%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V++N+P L +G + V VG++ QTP + I P W +P+SI ++ Sbjct: 43 HVVINLPQTRLFVYRDGTLLKSYPVAVGKMLTQTPTGTYAVTGIYPKPIWYVPKSIQEE- 101 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + PG N + + + Sbjct: 102 ----------------------------------MKQQGKPVLTSVPPGPDNPLGNAFVR 127 Query: 315 FYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F MH T P F + GCVR++N + V Sbjct: 128 FGDPRLGLGMHGTNVPTSV---PGFRSHGCVRLKN--------------EDIDELASTVS 170 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKD--SIIQF--RDDIYGLDN 414 V Y + +D + + Y D+ Sbjct: 171 PGAAVTVA----------YQTVLLNEDAAGELWLTALKNPYKYDD 205 >gi|308049519|ref|YP_003913085.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] gi|307631709|gb|ADN76011.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] Length = 308 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 94/289 (32%), Gaps = 51/289 (17%) Query: 110 SVQRLRERLIISGD------LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V+ L LI G S +E V Q + + + Sbjct: 11 RVRVLISLLIFLGFSAQAAIYSAPPQGSRLLGFPMEHRVAEGQSLDHVAQQYDMGLLAMM 70 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVG 222 A N VD + L ++L + R V++N+ L +N + + +G Sbjct: 71 AANPGVDPFLPPTGSTLTLPSQMLLPDVERRGVVINLAELRLYYFDNARGRVYVYPIGIG 130 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 RV R+TP++ ++I++ + +P W P + +K+ Sbjct: 131 RVGRETPLVKTKISQRIKDPTWT-PTANTRKE---------------------------- 161 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETS 341 W G N M + N Y +H T F +R ++ Sbjct: 162 -----WLEERGIELPRVVPAGPDNPMGHRALRLSYGNGEYLIHGTNHE--FGIGMR-VSA 213 Query: 342 GCVRVR--NIIDLDVWLLKDTPTWSRYHIEEVVK-TRKTTPVKLATEVP 387 GC+R+R +I +L + I E +K + + + L P Sbjct: 214 GCIRMRPNDIEELFELVR---VGEPVRIINEPIKISGEPNGLYLEVHEP 259 >gi|325274314|ref|ZP_08140422.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas sp. TJI-51] gi|324100552|gb|EGB98290.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas sp. TJI-51] Length = 325 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V++N+ L G+ V + +GR +PI +++I NP W P SI Sbjct: 96 PREGVVINLAEYRLYYYPKGQNVVYTFPLGIGREGWGSPIANTKIIAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ ++ + G N + Sbjct: 156 RKE-----------------------------------HAADGDILPAVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K +H + + F +R + GC R+ N+++L + TP Sbjct: 181 FKFTLGVP-GYLIHGSNKK--FGIGMRT-SHGCFRMLNNNVLELSKLVPVGTP 229 >gi|77164236|ref|YP_342761.1| hypothetical protein Noc_0717 [Nitrosococcus oceani ATCC 19707] gi|254436252|ref|ZP_05049759.1| ErfK/YbiS/YcfS/YnhG family [Nitrosococcus oceani AFC27] gi|76882550|gb|ABA57231.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207089363|gb|EDZ66635.1| ErfK/YbiS/YcfS/YnhG family [Nitrosococcus oceani AFC27] Length = 332 Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 46/177 (25%) Query: 192 GLRYVLVNIPAASLEAVENG-----KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + V++N+ L + + +GR TP+ + + NP WV Sbjct: 102 PRKGVVINLAEMRLYYFPESPTAQPSTVVTHPIGIGREGWSTPLGRTSVISKKKNPTWVP 161 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + ++ + PG N Sbjct: 162 PESIRAE-----------------------------------HAADGDPLPKIVPPGPDN 186 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + +H T P +R + GC+R+ +I+ L + TP Sbjct: 187 PLGKFAMRLGMP-GYLIHGTNRPW--GVGMR-VSHGCIRLYPEDILSLFNQVKVGTP 239 >gi|170720947|ref|YP_001748635.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida W619] gi|169758950|gb|ACA72266.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida W619] Length = 325 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 42/173 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V++N+ + G+ V + +GR +PI +++I NP W P SI Sbjct: 96 PREGVVINLAEYRMYYFPKGQSVVYTFPLGIGREGWGSPIANTKIIAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 RAE-----------------------------------HAADGDILPTVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K +H + + F +R + GC R+ N+++L + TP Sbjct: 181 YKFTLGVP-GYLIHGSNKK--FGIGMRT-SHGCFRMFNNNVLELSKMVPVGTP 229 >gi|54302422|ref|YP_132415.1| hypothetical protein PBPRB0743 [Photobacterium profundum SS9] gi|46915844|emb|CAG22615.1| hypothetical protein PBPRB0743 [Photobacterium profundum SS9] Length = 301 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 42/182 (23%) Query: 190 KMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+ L ++ + + +GRV R TP + +++++ + NP W Sbjct: 88 NVKRKGIIINLAELRLYYFPEDDKSIVYIFPIGIGRVGRATPNMITKVSQKIENPTWTPT 147 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 +I ++ Y + +I + G N Sbjct: 148 ANIRKE-----------YREKKDIEL-----------------------PAVVPAGPENP 173 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + Y +H T + F +R +SGC+R+ N D+ WL P + Sbjct: 174 LGEYAMRLAYSRGEYLIHGTNKD--FGIGMR-VSSGCIRM-NPWDI-EWLFPQVPRGTSV 228 Query: 367 HI 368 I Sbjct: 229 QI 230 >gi|260774029|ref|ZP_05882944.1| hypothetical protein VIB_002508 [Vibrio metschnikovii CIP 69.14] gi|260610990|gb|EEX36194.1| hypothetical protein VIB_002508 [Vibrio metschnikovii CIP 69.14] Length = 306 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L + V +GR+ R TP + ++I+++ NP W P+S+ + Sbjct: 96 IVVNLAELRLYYFPPNTQQVHIFPVGIGRIGRDTPEMTTQISQMRRNPTWTPPQSVRNE- 154 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 YL+ G N M + + Sbjct: 155 ----------YLQR------------------------GIELPAVVPAGPDNPMGNYAMR 180 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + I + Sbjct: 181 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLFHQVDRGVKVRIID--- 232 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V+ Sbjct: 233 --EPIKVTLEPDRSVYL 247 >gi|148556704|ref|YP_001264286.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingomonas wittichii RW1] gi|148501894|gb|ABQ70148.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingomonas wittichii RW1] Length = 328 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 82/305 (26%), Gaps = 58/305 (19%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V + L G + A + A++ +Q GL +G +D +T+ + Sbjct: 26 DPRVMGAQVLLDRLGF--GPGVIDGASGMSLTKALRGWQQAKGLPVTGRLDDATVGSFE- 82 Query: 168 PVDLRIRQLQVNLMR--IKKLLEQKMGLRYVLVNIPA--ASLEAVENGKVGLRSTVIVGR 223 P + V L ++ + R A +A+E +T Sbjct: 83 PYRAMPTMIGVTLTPDILEGPFVGPIPARESEQAKMASLGYSDAMEKLAERYHTTPATLV 142 Query: 224 VDR-QTPILHSRINRIMFN---PYWVIPRSI-------------------IQKDMMALLR 260 Q L + + N P P + + K ++ Sbjct: 143 ALNAQQTKLAPGVVIKVPNVIPPASNFPADLNPAWRKTLWTLNVGSDQPEVAKVVVDKSD 202 Query: 261 QDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPNF-------------------IF 298 + + G + + ++ Sbjct: 203 GVLRAFDGAGKLVAQFPATTGSRHDPLPIGQWKIQGRSYNPPFHYNPKLFWDAGSKDRKA 262 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID--LDVWL 356 PG + I+ ++ +H TP P R E+ GC+R+ N L + + Sbjct: 263 LLPPGPNGPVGVVWIDLDKQH-YGIHGTPNPEKIG---RTESHGCIRLTNWDAARLAMMV 318 Query: 357 LKDTP 361 TP Sbjct: 319 KPGTP 323 >gi|189423824|ref|YP_001951001.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter lovleyi SZ] gi|189420083|gb|ACD94481.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter lovleyi SZ] Length = 448 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 81/268 (30%), Gaps = 77/268 (28%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD------RQ 227 + L+ N R + + +++NIP L + G + + V +G + Sbjct: 206 QLLRYNNQR--IIPPHRTRD-GIVINIPDRMLYLFQQGSMAFSTAVALGTPTKTDQFVWE 262 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 TP+ +I +P W +P SI ++ + +GKEV Sbjct: 263 TPVGKFKIVNKAKDPTWTVPPSIQEEMRL--------------------EGKEVITS--- 299 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV- 346 PGK N + ++ +H T +P + + GC+RV Sbjct: 300 ------------IPPGKDNPLGKYAMKTSLP-GILIHSTTKPWSI---YTYASHGCIRVY 343 Query: 347 -RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 + +L + +T Y PV +D + Sbjct: 344 PERMEELFKLVKPNTAGEIIYK-------------------PVKLA-----VTEDGRVLL 379 Query: 406 --RDDIYGL-DNVHVGIIPLPEDHPIDS 430 DIY + L +DS Sbjct: 380 EAHVDIYKKTKGLAAEAQALIRAQKLDS 407 >gi|27367891|ref|NP_763418.1| hypothetical protein VV2_1544 [Vibrio vulnificus CMCP6] gi|320158161|ref|YP_004190539.1| hypothetical protein VVM_00694 [Vibrio vulnificus MO6-24/O] gi|27359464|gb|AAO08408.1| hypothetical protein VV2_1544 [Vibrio vulnificus CMCP6] gi|319933473|gb|ADV88336.1| hypothetical protein VVMO6_03314 [Vibrio vulnificus MO6-24/O] Length = 305 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 63/208 (30%), Gaps = 50/208 (24%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + +++N+ L E V +GRV R TP + + I NP W P Sbjct: 92 PVEYQGIVINLAELRLYYFEPELGKVHVFPVGIGRVGRDTPEMVTSIREKRPNPTWTPPA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI ++ + G N + Sbjct: 152 SIRKE-----------------------------------YREKGIELPKIVPAGPDNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T + F +R ++GC+R+ D+ WL R Sbjct: 177 GEYALRLAYGSGDYLIHGTNKD--FGIGLR-VSAGCIRME-PKDI-EWLFSQVDKGQRVK 231 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISA 395 I + V L P VY+ A Sbjct: 232 IIN-----QPVKVSLE---PGRIVYLEA 251 >gi|261822001|ref|YP_003260107.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] gi|261606014|gb|ACX88500.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] Length = 340 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 46/243 (18%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N D + L ++L ++VN+ L Sbjct: 54 IAADFKIGLLGMLEANPGADPYLPTAGSTLTIPTQMLLPDTPREGIVVNLAELRLYYYPK 113 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 GK + + +G++ R TP++ + ++ NP W +I + YL++ Sbjct: 114 GKNTVIVYPIGIGQLGRNTPLMTTSVSEKRENPTWTPTANIRKH-----------YLEEQ 162 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 I G N M + + Y +H T Sbjct: 163 GI-----------------------KLPAVVPAGPDNPMGLHALRLSAHGGVYLLHGTNA 199 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI-EEVVKTRKT----TPVKLA 383 F +R +SGC+R+R D+ L + P +R I + +KT V++ Sbjct: 200 D--FGIGMR-VSSGCIRLR-PDDI-KALFDNVPVGTRVQILNDAIKTSVEPDGKRYVEVH 254 Query: 384 TEV 386 + Sbjct: 255 QPL 257 >gi|37676018|ref|NP_936414.1| hypothetical protein VVA0358 [Vibrio vulnificus YJ016] gi|37200558|dbj|BAC96384.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 305 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 63/208 (30%), Gaps = 50/208 (24%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + +++N+ L E V +GRV R TP + + I NP W P Sbjct: 92 PVEYQGIVINLAELRLYYFEPELGKVHVFPVGIGRVGRDTPEMVTSIREKRPNPTWTPPA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI ++ + G N + Sbjct: 152 SIRKE-----------------------------------YREKGIELPKIIPAGPDNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T + F +R ++GC+R+ D+ WL R Sbjct: 177 GEYALRLAYGSGDYLIHGTNKD--FGIGLR-VSAGCIRME-PKDI-EWLFSQVDKGQRVK 231 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISA 395 I + V L P VY+ A Sbjct: 232 IIN-----QPVKVSLE---PGRIVYLEA 251 >gi|227111739|ref|ZP_03825395.1| hypothetical protein PcarbP_02182 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 340 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 80/243 (32%), Gaps = 46/243 (18%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N VD + L ++L ++VN+ L Sbjct: 54 IAADFKIGLLGMMEANPGVDPYLPTAGSTLTVPTQMLLPDTPREGIVVNLAELRLYYYPK 113 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 GK + + +G++ R TP++ + I+ NP W +I + YL++ Sbjct: 114 GKNTVIVYPIGIGQLGRNTPLMTTSISEKRENPTWTPTANIRKH-----------YLEEQ 162 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 I G N M + + Y +H T Sbjct: 163 GI-----------------------KLPAVVPAGPDNPMGLHALRLSAHGGVYLLHGTNA 199 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI-EEVVKTRKT----TPVKLA 383 F +R +SGC+R+R D+ L + P +R I + +KT V++ Sbjct: 200 D--FGIGMR-VSSGCIRLR-PDDI-KALFDNVPVGTRVQIVNDAIKTSVEPDGKRYVEVH 254 Query: 384 TEV 386 + Sbjct: 255 QPL 257 >gi|253701884|ref|YP_003023073.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M21] gi|251776734|gb|ACT19315.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M21] Length = 307 Score = 91.2 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 46/173 (26%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKV--GLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ ++VN+P L GK + +G +TP+ + + M NP Sbjct: 100 WIVPHVKNDPDIVVNLPEYRLYLFSQGKPGGVFTFPLGIGDEGAETPLGSYTVIQKMTNP 159 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI + P P Sbjct: 160 SWHVPDSIRHE---------------------------------------VPELPQIVPP 180 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G N + + + R N +H T P R + GC+R+ D+ Sbjct: 181 GPSNPLGTHALRLS-RGNILIHGTNRPWGIG---RRSSHGCLRLY-PEDITTL 228 >gi|50120795|ref|YP_049962.1| hypothetical protein ECA1865 [Pectobacterium atrosepticum SCRI1043] gi|49611321|emb|CAG74768.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 340 Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 46/243 (18%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N D + L ++L ++VN+ L Sbjct: 54 IAADFKIGLLGMLEANPGADPYLPTPGSTLTIPTQMLLPDTPREGIVVNLAELRLYYYPK 113 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 GK + + +G++ R TP++ + ++ NP W +I + YL++ Sbjct: 114 GKNTVIVYPIGIGQLGRNTPLMTTSVSEKRENPTWTPTANIRKH-----------YLEEQ 162 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 I G N M + + Y +H T Sbjct: 163 GI-----------------------KLPAVVPAGPDNPMGLHALRLSAHGGVYLLHGTNA 199 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI-EEVVKTRKT----TPVKLA 383 F +R +SGC+R+R D+ L + P +R I + +KT V++ Sbjct: 200 D--FGIGMR-VSSGCIRLR-PDDI-KALFDNVPVGTRVQILNDAIKTSVEPDGKRYVEVH 254 Query: 384 TEV 386 + Sbjct: 255 QPL 257 >gi|229589220|ref|YP_002871339.1| hypothetical protein PFLU1701 [Pseudomonas fluorescens SBW25] gi|229361086|emb|CAY47949.1| conserved hypothetical exported protein [Pseudomonas fluorescens SBW25] Length = 321 Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 50/172 (29%), Gaps = 42/172 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L G+ V + +GR +PI H+ I NP W P SI Sbjct: 96 PREGIVINLAEYRLYYFPKGQNVVYTFPLGIGREGWGSPIAHTSIIAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ G N + Sbjct: 156 KAE-----------------------------------HAANGDPLPNVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 K + +H + F R + GC R+ N++++ + T Sbjct: 181 FKFTLGTP-GYLIHGSNMK--FGIGTRT-SHGCFRMFNNNVLEMAGMVPVGT 228 >gi|70731627|ref|YP_261368.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas fluorescens Pf-5] gi|68345926|gb|AAY93532.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas fluorescens Pf-5] Length = 330 Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 42/172 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L G+ V + +GR +PI H+ I NP W P SI Sbjct: 102 PREGIVINLAEYRLYYYPKGRNVVYTFPLGIGREGWGSPIAHTSITAKTPNPTWTPPASI 161 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 162 KAE-----------------------------------HAADGDPLPNVVPAGPDNPLGP 186 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 K + +H + + F +R + GC R+ N++++ + T Sbjct: 187 FKFTLGTP-GYLIHGSNKK--FGIGMRT-SHGCFRMLNNNVLEMAGMVPVGT 234 >gi|312959750|ref|ZP_07774266.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas fluorescens WH6] gi|311285916|gb|EFQ64481.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas fluorescens WH6] Length = 321 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 50/172 (29%), Gaps = 42/172 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L G+ V + +GR +PI H+ I NP W P SI Sbjct: 96 PREGIVINLAEYRLYYFPKGQNVVYTFPLGIGREGWGSPIAHTSIIAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ G N + Sbjct: 156 KAE-----------------------------------HAANGDPLPNVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 K + +H + F R + GC R+ N++++ + T Sbjct: 181 FKFTLGTP-GYLIHGSNMK--FGIGTRT-SHGCFRMFNNNVLEMAGMVPVGT 228 >gi|225163557|ref|ZP_03725867.1| ErfK/YbiS/YcfS/YnhG family protein [Opitutaceae bacterium TAV2] gi|224801823|gb|EEG20109.1| ErfK/YbiS/YcfS/YnhG family protein [Opitutaceae bacterium TAV2] Length = 356 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 79/286 (27%), Gaps = 57/286 (19%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--NVPV 169 L R DL S + +A+ FQ GL +G +D +T + + P Sbjct: 67 IALARR-----DLS-SGPIDGRPGPQTRAALSAFQRDQGLPVTGALDDATRARLILDTPP 120 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR--STVIVGRVDRQ 227 +L ++ L +G LE V + R+D + Sbjct: 121 LTSRLITAADLASLQPLSPTWLGKSAQTTLAYQTPLELVAEQTRAHPDWLRQVNPRIDWR 180 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMA--------LLRQDPQYLKDNNIHMIDEKGK 279 +R+ ++ +P + P + +L + D G+ Sbjct: 181 RVAPGTRV--LVPDPERIFPALAPGGASTPATPVPKRRKAARVRIHLASRTLQATDADGR 238 Query: 280 -----------EVFVEEVDW-----------NSPEPPNFI-----------FRQDPGKIN 306 V V + +P F PG N Sbjct: 239 LLAHFPVSIARRVDKRPVGELHVTVVVPNPDYTFDPAVFPESAEARELGRKLILPPGPNN 298 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + I +H TP+P R E+ GC R+ N L Sbjct: 299 PVGLVWIGLDRP-GYGLHGTPDPQHVG---RTESHGCFRLANWDAL 340 >gi|227329828|ref|ZP_03833852.1| hypothetical protein PcarcW_21820 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 340 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 46/204 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L GK + + +G++ R TP++ + ++ NP W Sbjct: 93 DTPREGIVVNLAELRLYYYPKGKNTVIVYPIGIGQLGRNTPLMTTSVSEKRENPTWTPTA 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + YL++ I G N M Sbjct: 153 NIRKH-----------YLEEQGI-----------------------KLPAVVPAGPDNPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T F +R +SGC+R+R D+ L + P +R Sbjct: 179 GLHALRLSAHGGVYLLHGTNAD--FGIGMR-VSSGCIRLR-PDDI-KALFDNVPVGTRVQ 233 Query: 368 I-EEVVKTRKT----TPVKLATEV 386 I + +KT V++ + Sbjct: 234 IVNDAIKTSVEPDGKRYVEVHQPL 257 >gi|94496487|ref|ZP_01303064.1| ErfK/YbiS/YcfS/YnhG [Sphingomonas sp. SKA58] gi|94424233|gb|EAT09257.1| ErfK/YbiS/YcfS/YnhG [Sphingomonas sp. SKA58] Length = 347 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 76/308 (24%), Gaps = 73/308 (23%) Query: 118 LIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST---LEAMNVPVDLR 172 L G +++ ++A++ FQ H L +G+ D T L Sbjct: 56 LDRWGFSPGVLDGKDGMSY----KAALRGFQEAHDLPVTGLFDQPTSNMLLEGEARPTTY 111 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + ++ + R GL +E +T Sbjct: 112 LVKIPEDFARGP-FFNIPRGLNEQASLPALTYRNLMEKLAERFHTTPDALVALNSPTTQV 170 Query: 233 SRINRIMFNPYWVIPRSIIQKD-----------------------MMALLRQDPQYLKDN 269 I P + I+ D ++ + + Sbjct: 171 GAGATIRVPAIDNQPVAQIEGDERGWGETLASLGVAKEQPQADHIVVDKSEGLLKAYDAD 230 Query: 270 NIHMID---EKGKEVFVEEVD-------------------WNSPEPPNFIFRQDPGKINA 307 N + G + + + + PG Sbjct: 231 NRMIAQFPVTTGSQHDPLPIGEWTIKGVSRNPEFHYNPDLFWDASSKDEKAVLKPGPNGP 290 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + I+ + +H TPEP R E+ GC+R+ N W Sbjct: 291 VGVVWIDLSKDH-YGIHGTPEPQTIG---RTESHGCIRLTN--------------WDAAR 332 Query: 368 IEEVVKTR 375 + ++VKT Sbjct: 333 LAQMVKTG 340 >gi|253688821|ref|YP_003018011.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755399|gb|ACT13475.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 340 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 46/243 (18%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N VD + + L ++L ++VN+ L Sbjct: 54 IAADFKIGLLGMMEANPGVDPYLPKAGSTLTIPTQMLLPDTPREGIVVNLAELRLYYYPK 113 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 GK + + +G++ R TP++ + ++ NP W +I + YL++ Sbjct: 114 GKNTVIVYPIGIGQLGRNTPLMTTSVSEKRENPTWTPTANIRKH-----------YLEEQ 162 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 I G N M + + Y +H T Sbjct: 163 GI-----------------------KLPAVVPAGPDNPMGLHALRLSAHGGVYLLHGTNA 199 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI-EEVVKTRKT----TPVKLA 383 F +R +SGC+R+R D+ L + P +R I + +KT V++ Sbjct: 200 D--FGIGMR-VSSGCIRLR-PDDI-KALFDNVPVGTRVQILNDAIKTSVEPDGKRYVEVH 254 Query: 384 TEV 386 + Sbjct: 255 QPL 257 >gi|149181183|ref|ZP_01859682.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus sp. SG-1] gi|148851082|gb|EDL65233.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus sp. SG-1] Length = 347 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 13/161 (8%) Query: 2 VGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDM 61 + + + + YLI G++ E + S LD S + + + + + Sbjct: 107 INFTQAYDRYVWYHAYLIDKYGVNPREDIVAHSTLD----PSRRTDPQNALNRYGISWEE 162 Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIIS 121 ++ T E+ +RGG LP L G+ V+ ++ +L+ + Sbjct: 163 FLEDVNNAY--RTYFTNEET----SQPAARGGSLSLP---LGEGDQGALVREIQTKLVKA 213 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G P G F E AV FQ ++GL G+V TL Sbjct: 214 GFSLPRYGADGIFGQETEMAVMRFQRKYGLRVDGLVGMQTL 254 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPS 154 LP L G+ V++L+ L + F A++ FQ + L Sbjct: 271 PLPGGILQEGDEGNGVRQLQRALKQINF--DPGEIDGIFGPKTMDAIRRFQETYAELKND 328 Query: 155 GMVDSSTLEAMNVPVDL 171 G+ +T + + + ++ Sbjct: 329 GIYGPNTRKYILMELEE 345 >gi|171909851|ref|ZP_02925321.1| ErfK/YbiS/YcfS/YnhG family protein [Verrucomicrobium spinosum DSM 4136] Length = 322 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 71/298 (23%), Gaps = 50/298 (16%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + P V +L+ L G L + + A+ + HGL Sbjct: 22 PRVATAPRPEDMVQDDVVKLQIHL--DGQLFGPGIVDGREGEFTRKALARYNTSHGLPGD 79 Query: 155 -----GMVDSST--------LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 G ++ T L + V + L E + Sbjct: 80 AFPDLGSIEPYTTYTVTADDLSKIGVQGGSPSVVVLQKTQPYTSLTELLAERFHTSK--- 136 Query: 202 AASLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR---SIIQKDMMA 257 A + V + P+ + I P I D+ Sbjct: 137 AFVARLNPGVNVDAAPAGASVTVPNVARPLFVTEIPATSKTSRVQDPALANRFIVVDLRV 196 Query: 258 LLRQDPQYLKDNNIHMID--------------EKGKEVFVEEVDWNSPEPPNFI------ 297 + + Y + + K V + W + Sbjct: 197 KMLEV--YDAEGGPLIAAFPITPGSSEHPAPQGDWKIVGITTFPWYRWDEGVLKRGERTE 254 Query: 298 --FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + PG + + + +R +H T P R + GC+R+ N Sbjct: 255 DFYNLPPGPNSPVGIVWMGL-NRPGVGIHGTSTPETIG---RSGSHGCIRLSNWDAAA 308 >gi|330808350|ref|YP_004352812.1| hypothetical protein PSEBR_a1605 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376458|gb|AEA67808.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 323 Score = 90.5 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 42/172 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L G+ V + +GR +PI H+ I NP W P SI Sbjct: 96 PREGIVINLAEYRLYYFPKGRNVVYTFPLGIGREGWGSPIAHTSIIAKTPNPTWTPPASI 155 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + ++ + G N + Sbjct: 156 KAE-----------------------------------HAADGDPLPNVVPAGPDNPLGP 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 K + +H + + F +R + GC R+ N++++ + T Sbjct: 181 FKFTLGTP-GYLIHGSNKK--FGIGMRT-SHGCFRMFNNNVLEMAGMVPVGT 228 >gi|225024391|ref|ZP_03713583.1| hypothetical protein EIKCOROL_01266 [Eikenella corrodens ATCC 23834] gi|224942888|gb|EEG24097.1| hypothetical protein EIKCOROL_01266 [Eikenella corrodens ATCC 23834] Length = 310 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 70/239 (29%), Gaps = 71/239 (29%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NIP L ENG++ V VG+ +TP+ + I +NP W IP SI ++ Sbjct: 33 QHVVINIPQMRLFLYENGQLKNVYPVAVGKNRTRTPLGNYHIGSKAYNPTWSIPASIRRE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + I PG N + + Sbjct: 93 R-----------------------------------AAAGLPEISSIPPGPSNPLGPVFV 117 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTPTWSRYHIEE 370 +H T P + GCVR+ N + Sbjct: 118 RLGPPRLGLGIHGTNAPASV---PGIRSHGCVRMHSNNALQFA----------------R 158 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF----RDDIYGLDNVHVGIIPLPED 425 V+T + V +Y A D+ D Y N++ + D Sbjct: 159 NVRTGASAAV----------IYQLASLNADTNNHLWLAAYADPYQQRNLNTTALRQSID 207 >gi|169831666|ref|YP_001717648.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Desulforudis audaxviator MP104C] gi|169638510|gb|ACA60016.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Desulforudis audaxviator MP104C] Length = 307 Score = 90.1 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 85/257 (33%), Gaps = 79/257 (30%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ ++E+L +G ++ + +AV+ Q +G++PSG+VD+ T + Sbjct: 48 GNDVREVQEQLRAAGLF--QGPVNGVYGPITAAAVRSLQEANGIEPSGVVDAETWYLLA- 104 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 L ++ + L G +++++ +L +ENG + VG+ + Sbjct: 105 --------LMSTPVKTSEPLPPPTGEVEIIIDVQKRTLTVMENGYPYKQFPCAVGKNETP 156 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 TP+ + I R N W G +D Sbjct: 157 TPVGNWSIRRKARN--WG-----------------------------TGFGTRWLGLNID 185 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 W Y +H T +P R + GC+R+ Sbjct: 186 W-------------------------------GIYGIHGTNKPYSIG--TRA-SHGCIRM 211 Query: 347 RN--IIDLDVWLLKDTP 361 N + +L W+ TP Sbjct: 212 FNRHVEELFPWVEAGTP 228 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V ++ + G D + F + ++ AV F+ H L VD Sbjct: 243 TLVHGDRESGVLEIQRLMQKHGYYD--GPIDGIFGSGLQKAVVQFRKDHNLRYDNRVDRE 300 >gi|78223666|ref|YP_385413.1| peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] gi|78194921|gb|ABB32688.1| Peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] Length = 293 Score = 90.1 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 51/209 (24%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV- 224 + +R QV + ++++ +++ +++NIP +L NG+V +V VG+ Sbjct: 57 RIDPQKPLRAGQVLRVDTRRIVPRQI-DDGIVINIPDRTLYYFRNGEVDRVLSVAVGKPK 115 Query: 225 --------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 D TP + RI + +P W +P SI ++ Sbjct: 116 PVNDPEKRDWHTPTGNFRIIGKVKDPTWRVPPSIRKE----------------------- 152 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 PGK N + ++ +H T P Sbjct: 153 ------------MKERGKEVKTIVPPGKKNPLGKYALKTSIP-GILIHSTNAPESV---Y 196 Query: 337 RFETSGCVRV--RNIIDLDVWLLKDTPTW 363 F + GC+RV + D + ++T Sbjct: 197 SFSSHGCIRVFPEFMEDFFNSVTEETTGE 225 >gi|317492238|ref|ZP_07950667.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919577|gb|EFV40907.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 333 Score = 89.7 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 42/184 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ R TP + + +++ + NP W Sbjct: 94 DAPREGIVINLAEMRLFYYPKGEGKVVVYPIGIGQLGRNTPEMVTSVSQSIANPTWTPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + E G N M Sbjct: 154 NIRKH-----------------------------------YKAEGVTLPAVVPAGPENPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + ++ Y +H T F +R +SGC+R+R D+ L K P +R Sbjct: 179 GLFALRLSAQGGVYLIHGTNA--NFGIGMR-VSSGCIRLR-PDDI-EALFKTVPKGTRVQ 233 Query: 368 IEEV 371 I Sbjct: 234 IVNA 237 >gi|21109718|gb|AAM38210.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 215 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 46/203 (22%), Gaps = 28/203 (13%) Query: 175 QLQVNLMRIKKLL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 Q + + G E + + R L Sbjct: 2 QYTLTDADVAGPFQPIPKGPAEQAKLTALGYASVDEALGERFHADPALLRQLNPGVDLSK 61 Query: 234 RINRI-MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD-- 287 + I + N V P + K ++ + + G + + Sbjct: 62 AGSVIEVPNIDGVPPLAKPAKLVVDKSDSTLRLFDADGKVYAQFPVSSGSKHDPLPIGRW 121 Query: 288 -----------------WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + + G N + I+ + +H TPEP Sbjct: 122 KILGISRDPVFKYNPKLFWDAKKGEQKATLPAGPNNPVGRVWIDLSKPH-YGLHGTPEPG 180 Query: 331 LFNNVVRFETSGCVRVRNIIDLD 353 + GCVR+ N + Sbjct: 181 HVGKTE---SHGCVRLTNWDVVA 200 >gi|308270996|emb|CBX27606.1| hypothetical protein N47_H24280 [uncultured Desulfobacterium sp.] Length = 322 Score = 89.7 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 52/194 (26%) Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRV 224 VP + R+ + + +L +++N+ L ++ K + V +G Sbjct: 97 VPEENRLIVIPT-----EWILPDIGIRHGIVINVAEMRLYYFPDDDTKSVITYPVGIGDE 151 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+ + + NP W +P+SI Sbjct: 152 GKDTPLGIFSVIEKIKNPAWYVPKSI---------------------------------- 177 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 E P PG N M S + +H T P + GC+ Sbjct: 178 -----QLEKPELPAVVPPGPDNPMGSRALRLSI-WTVLIHGTNRPWGIGTRN---SHGCI 228 Query: 345 RV--RNIIDLDVWL 356 R+ +I L + Sbjct: 229 RMYEEDIQKLFEQI 242 >gi|53804993|ref|YP_113349.1| ErfK/YbiS/YcfS/YnhG family protein [Methylococcus capsulatus str. Bath] gi|53758754|gb|AAU93045.1| ErfK/YbiS/YcfS/YnhG family protein [Methylococcus capsulatus str. Bath] Length = 361 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 65/212 (30%), Gaps = 47/212 (22%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVE---NGKVGL---RSTVIVGRVDRQTPILHSRINR 237 ++ + ++VNIP L G + +GR+D ++P+ +++ Sbjct: 86 RQFILPDAPRNGIVVNIPEMRLYFYPSAGKGAKPTKVVTYPISIGRMDWRSPLGLTKVVA 145 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 + +P W P SI + ++ Sbjct: 146 KVKDPVWRPPASIKAE-----------------------------------HAKNGEILP 170 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + + +H T + + +R T GC+R+ D+ Sbjct: 171 DVVPAGPNNPLGQFAMRLGVP-GYLIHGTDQDKSYGIGMR-VTHGCIRMY-PEDVAKLFP 227 Query: 358 KDTPTWSRYHIEEVVK---TRKTTPVKLATEV 386 + + + VK +T ++++ + Sbjct: 228 EVAVGTPVNLVNQPVKLGWQGETLYIEVSESL 259 >gi|330860172|emb|CBX70493.1| hypothetical protein YEW_AT04120 [Yersinia enterocolitica W22703] Length = 85 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 + DL LL+D W+ + +K TT V + VPV Y++AW D QF Sbjct: 1 MNKASDLANMLLQDA-GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQF 59 Query: 406 RDDIYGLD 413 R DIY D Sbjct: 60 RTDIYNYD 67 >gi|238765289|ref|ZP_04626217.1| hypothetical protein ykris0001_43380 [Yersinia kristensenii ATCC 33638] gi|238696512|gb|EEP89301.1| hypothetical protein ykris0001_43380 [Yersinia kristensenii ATCC 33638] Length = 355 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 42/220 (19%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N D + L ++L +++N+ L Sbjct: 56 IAADYKIGLLGMLEANPGADPYLPLPGSVLTIPTQMLLPDTPREGIVINLAELRLYYYPK 115 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 G+ + + +G++ R TP + + +++ + NP W +I + YL + Sbjct: 116 GQNKVVVYPIGIGQLGRNTPTMTTSVSQKIPNPTWTPTANIRKN-----------YLAE- 163 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 G N M + + + Y +H T Sbjct: 164 -----------------------GITLPSVVPAGPENPMGLFAMRLSAGSGEYLIHGTNA 200 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 F +R +SGC+R+R D+ L K P +R I Sbjct: 201 N--FGIGMR-VSSGCIRLR-PDDI-EALFKSVPKGTRVQI 235 >gi|123442427|ref|YP_001006406.1| hypothetical protein YE2166 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161649|ref|YP_004298226.1| hypothetical protein YE105_C2027 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089388|emb|CAL12236.1| putative exported protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605859|emb|CBY27357.1| L,D-transpeptidase YcfS [Yersinia enterocolitica subsp. palearctica Y11] gi|325665879|gb|ADZ42523.1| hypothetical protein YE105_C2027 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861432|emb|CBX71658.1| uncharacterized protein ycfS [Yersinia enterocolitica W22703] Length = 355 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 42/220 (19%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N D + L ++L +++N+ L Sbjct: 56 IAADYKIGLLGMLEANPDADPYLPLPGSVLTIPTQMLLPDTPREGIVINLAELRLYYYPK 115 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 G+ + + +G++ R TP + + +++ + NP W +I + Sbjct: 116 GQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTWTPTANIRKH---------------- 159 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 + E G N M + + Y +H T Sbjct: 160 -------------------YAAEGVTLPAVVPAGPENPMGLFAMRLAAGGGEYLIHGTNA 200 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 F +R +SGC+R+R D+ L K P +R I Sbjct: 201 N--FGIGMR-VSSGCIRLR-PDDI-EALFKAVPKGTRVQI 235 >gi|295694715|ref|YP_003587953.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus tusciae DSM 2912] gi|295410317|gb|ADG04809.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus tusciae DSM 2912] Length = 276 Score = 89.3 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 62/245 (25%), Gaps = 84/245 (34%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V ++ RL + G L + AV FQ GL G+V +T Sbjct: 13 PYMRGPDVIAVQRRLTVFGRLSSW---DGIYGPVTARAVAEFQRASGLLSDGIVGPATWV 69 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A+ + +++ G ++ ++ L + ++ V VG+ Sbjct: 70 ALGI-------------EQVEW----GGGQFHIAIDTERRVLSLFQRDRLIRSFPVAVGK 112 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 TP+ I + NP P + + + Sbjct: 113 PTTPTPVGDWVIVEKIANPGG------------------PFGAAWMRLSVPNGGYGIH-- 152 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 G N +V R + GC Sbjct: 153 -------------------GTNNP-------------------------GSVGRAVSHGC 168 Query: 344 VRVRN 348 VR+ N Sbjct: 169 VRMHN 173 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 97 LPIRPLHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R LH+G + + +++ L + G F ++AV+ FQ L G Sbjct: 196 LTTRLLHMGVTPGDDIAQVQRMLQVLGFY--RGDTDGIFGRITDTAVRAFQQSAQLTVDG 253 Query: 156 MVDSST 161 +V T Sbjct: 254 IVGPRT 259 >gi|88811264|ref|ZP_01126520.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrococcus mobilis Nb-231] gi|88791803|gb|EAR22914.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrococcus mobilis Nb-231] Length = 353 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 65/221 (29%), Gaps = 71/221 (32%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVE-----NGKVGLRSTVIVGRVDRQTPILHSRINRI 238 +K + + +++NIP L + + V +GR D TP+ + + Sbjct: 126 RKFILPRAPREGIVINIPELRLYYYPPAAKGKARQVITHPVGLGRQDWATPLGRASVVEK 185 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 + P W P SI + ++ Sbjct: 186 IPQPTWYPPASIRAE-----------------------------------HAARGEKLPG 210 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 PG N + + +H T +P + +R + GC+R+ D+ + Sbjct: 211 IVPPGPNNPLGEYVLLLSIP-GYLIHGTNKP--YGVGMR-VSHGCIRLY-PEDIARFFA- 264 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV---YISAW 396 +++ + PVH V Y AW Sbjct: 265 ----------------------RVSRKTPVHIVDQPYKLAW 283 >gi|67921138|ref|ZP_00514657.1| ErfK/YbiS/YcfS/YnhG [Crocosphaera watsonii WH 8501] gi|67857255|gb|EAM52495.1| ErfK/YbiS/YcfS/YnhG [Crocosphaera watsonii WH 8501] Length = 191 Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 62/219 (28%), Gaps = 58/219 (26%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR----YVLVNIPAASLE 206 L G+ + P + + + + +V++N+ + Sbjct: 19 LPIEGINKQAIASEGTTPETPPTELPVTSPVEEAAIPTAPENNQTLATHVVLNLKERRVY 78 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 ++ +V V +GR +TP + + +++ +P W P Sbjct: 79 VYQDDQVIANYRVAIGRPGWETPKGNFSVIQMVEDPQWKNP------------------- 119 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM--H 324 V PG + + I F Y+ H Sbjct: 120 ----------WNGRVS------------------APGPNSPLGERWIGFSREGGKYIGFH 151 Query: 325 DTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 TP + + GCVR+RN + +L + P Sbjct: 152 GTPGEHVMGQ---AVSHGCVRMRNRDVKELYELVQNGIP 187 >gi|260425195|ref|ZP_05734487.2| ErfK/YbiS/YcfS/YnhG family protein [Dialister invisus DSM 15470] gi|260404459|gb|EEW98006.1| ErfK/YbiS/YcfS/YnhG family protein [Dialister invisus DSM 15470] Length = 351 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 62/240 (25%), Gaps = 84/240 (35%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++ + + +N+ + L E + V VG + +P+ I+ NP W Sbjct: 50 PKKSETGKKITLNLASRLLTLYEGTEKVRIYPVAVGAPETPSPVGEFSISEKEVNPVWTD 109 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P++ G N Sbjct: 110 PKT-----------------------------------------------KTTVPSGPSN 122 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWS 364 + + Y H T P R + GC+R+ ++ +L + T Sbjct: 123 PLGYRWLGLYGNYGI--HGTNAPWSIG---RSVSHGCIRMYEEDVEELFESVPMGT---- 173 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK--DSIIQF--RDDIYGLDNVHVGII 420 PV +Y + D + + D YG + + V + Sbjct: 174 ----------------------PVEIIYDRVIMEEAPDHTVSYYIYPDGYGWEPLTVSSV 211 >gi|307823175|ref|ZP_07653405.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307735950|gb|EFO06797.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 470 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 59/212 (27%), Gaps = 68/212 (32%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVG--LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +N+ L + V +GR TP+ + I NP W +P Sbjct: 147 DSPHKGIALNLANMRLFYYPKKQPDKVYTYPVGIGRQGWNTPMGQTSIVAKDANPSWNVP 206 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI ++ ++ + + G N Sbjct: 207 ESIHRE-----------------------------------HAEKGDSLPKVVRSGPDNP 231 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + +H T +P + GCV++ D++V K T Sbjct: 232 LGLYAMRLGFP-GYLIHGTNKPYGIGM---QISHGCVQLY-PEDIEVLFKKATVG----- 281 Query: 368 IEEVVKTRKTTPVKLATEVPVHFV---YISAW 396 +PV + Y++AW Sbjct: 282 ------------------MPVRIIHQPYLTAW 295 >gi|108807738|ref|YP_651654.1| hypothetical protein YPA_1743 [Yersinia pestis Antiqua] gi|145598053|ref|YP_001162129.1| hypothetical protein YPDSF_0750 [Yersinia pestis Pestoides F] gi|162421439|ref|YP_001606997.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis Angola] gi|165927498|ref|ZP_02223330.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939524|ref|ZP_02228070.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166011816|ref|ZP_02232714.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210795|ref|ZP_02236830.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400728|ref|ZP_02306234.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422171|ref|ZP_02313924.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167470494|ref|ZP_02335198.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis FV-1] gi|229837923|ref|ZP_04458082.1| hypothetical protein YPH_0148 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895083|ref|ZP_04510259.1| hypothetical protein YPS_2868 [Yersinia pestis Pestoides A] gi|229898484|ref|ZP_04513629.1| hypothetical protein YPF_2918 [Yersinia pestis biovar Orientalis str. India 195] gi|294503598|ref|YP_003567660.1| hypothetical protein YPZ3_1488 [Yersinia pestis Z176003] gi|108779651|gb|ABG13709.1| hypothetical protein YPA_1743 [Yersinia pestis Antiqua] gi|145209749|gb|ABP39156.1| hypothetical protein YPDSF_0750 [Yersinia pestis Pestoides F] gi|162354254|gb|ABX88202.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis Angola] gi|165912573|gb|EDR31204.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920553|gb|EDR37830.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165989281|gb|EDR41582.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207975|gb|EDR52455.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958983|gb|EDR56004.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049581|gb|EDR60989.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229688032|gb|EEO80103.1| hypothetical protein YPF_2918 [Yersinia pestis biovar Orientalis str. India 195] gi|229694289|gb|EEO84336.1| hypothetical protein YPH_0148 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701845|gb|EEO89868.1| hypothetical protein YPS_2868 [Yersinia pestis Pestoides A] gi|262361640|gb|ACY58361.1| hypothetical protein YPD4_1453 [Yersinia pestis D106004] gi|262365618|gb|ACY62175.1| hypothetical protein YPD8_1492 [Yersinia pestis D182038] gi|294354057|gb|ADE64398.1| hypothetical protein YPZ3_1488 [Yersinia pestis Z176003] Length = 339 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ R TP + + I++ + NP W Sbjct: 95 DTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRDTPTMVTSISQKIPNPTWTPTA 154 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + YL + G N M Sbjct: 155 NIRKN-----------YLAE------------------------GITLPSVVPAGPDNPM 179 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T F +R +SGC+R+R D+ L P +R Sbjct: 180 GQFALRLSAGRGEYLIHGTNAD--FGIGLR-VSSGCIRLR-PDDI-EALFNSVPKGTRVQ 234 Query: 368 I 368 I Sbjct: 235 I 235 >gi|94968756|ref|YP_590804.1| ErfK/YbiS/YcfS/YnhG [Candidatus Koribacter versatilis Ellin345] gi|94550806|gb|ABF40730.1| ErfK/YbiS/YcfS/YnhG [Candidatus Koribacter versatilis Ellin345] Length = 205 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 64/227 (28%), Gaps = 67/227 (29%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +Q R +E R +LV+IP L +E+ KV V VG+ +P Sbjct: 28 AQTVQATEAR---PMEAPRPTRLILVSIPDRKLALLEDDKVVKVYPVAVGKDSTPSPEGT 84 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 I + NP + +GK V Sbjct: 85 FTIKSHVTNPTYYH------------------------------EGKVV----------- 103 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII-- 350 PG N + S + + +H T P + GC+R+ Sbjct: 104 --------APGPQNPLGSRWMGLSEK-GYGIHGTNAPKSIGK---AASHGCIRMAKKDLE 151 Query: 351 DLDVWLLKDTPTWSRYHIEEVV---------KTRKTTPVKLATEVPV 388 +L + R +E + T TT V PV Sbjct: 152 ELFTLVKVGDGVDIRGERDEQMAQVFGVEADATPATTVVAAIQNAPV 198 >gi|238782569|ref|ZP_04626600.1| hypothetical protein yberc0001_22190 [Yersinia bercovieri ATCC 43970] gi|238716496|gb|EEQ08477.1| hypothetical protein yberc0001_22190 [Yersinia bercovieri ATCC 43970] Length = 355 Score = 88.5 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 42/220 (19%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N D + L ++L +++N+ L Sbjct: 56 IAADYKIGLLGMLEANPDADPYLPLPGSVLTIPTQMLLPDTPREGIVINLAELRLYYYPK 115 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 G+ + + +G++ R TP + + +++ + NP W P + I+K + Sbjct: 116 GQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTWT-PTANIRKHYL------------- 161 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 E G N M + + Y +H T Sbjct: 162 ---------------------AEGVTLPAVVPAGPENPMGLFAMRLAAGGGEYLIHGTNA 200 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 F +R +SGC+R+R D+ L K P +R I Sbjct: 201 N--FGIGMR-VSSGCIRLR-PDDI-EALFKSVPKGTRVQI 235 >gi|22125832|ref|NP_669255.1| hypothetical protein y1940 [Yersinia pestis KIM 10] gi|51596632|ref|YP_070823.1| hypothetical protein YPTB2308 [Yersinia pseudotuberculosis IP 32953] gi|108812015|ref|YP_647782.1| hypothetical protein YPN_1853 [Yersinia pestis Nepal516] gi|153948284|ref|YP_001400722.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis IP 31758] gi|167424834|ref|ZP_02316587.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024092|ref|YP_001720597.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis YPIII] gi|186895688|ref|YP_001872800.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis PB1/+] gi|229902327|ref|ZP_04517447.1| hypothetical protein YP516_2061 [Yersinia pestis Nepal516] gi|270490494|ref|ZP_06207568.1| ErfK/YbiS/YcfS/YnhG [Yersinia pestis KIM D27] gi|21958762|gb|AAM85506.1|AE013797_1 hypothetical protein y1940 [Yersinia pestis KIM 10] gi|51589914|emb|CAH21546.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775663|gb|ABG18182.1| hypothetical protein YPN_1853 [Yersinia pestis Nepal516] gi|152959779|gb|ABS47240.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis IP 31758] gi|167056021|gb|EDR65799.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750626|gb|ACA68144.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis YPIII] gi|186698714|gb|ACC89343.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis PB1/+] gi|229680662|gb|EEO76758.1| hypothetical protein YP516_2061 [Yersinia pestis Nepal516] gi|270338998|gb|EFA49775.1| ErfK/YbiS/YcfS/YnhG [Yersinia pestis KIM D27] gi|320015053|gb|ADV98624.1| hypothetical protein YPC_2032 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 354 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ R TP + + I++ + NP W Sbjct: 95 DTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRDTPTMVTSISQKIPNPTWTPTA 154 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + YL + G N M Sbjct: 155 NIRKN-----------YLAE------------------------GITLPSVVPAGPDNPM 179 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T F +R +SGC+R+R D+ L P +R Sbjct: 180 GQFALRLSAGRGEYLIHGTNAD--FGIGLR-VSSGCIRLR-PDDI-EALFNSVPKGTRVQ 234 Query: 368 I 368 I Sbjct: 235 I 235 >gi|119485108|ref|ZP_01619493.1| hypothetical protein L8106_06659 [Lyngbya sp. PCC 8106] gi|119457336|gb|EAW38461.1| hypothetical protein L8106_06659 [Lyngbya sp. PCC 8106] Length = 204 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 54/198 (27%), Gaps = 60/198 (30%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM--------GLRYVLVNIPAASLEAVENGK 212 T + R + NL+ +++ + + N + Sbjct: 37 TSSEVAQGASTRAAVIPSNLLNPTLPGLDDPSRFLPLGKPKMQLVLRLAQRRVFVYRNDQ 96 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V VG+ +TP ++ +++ NP W P Sbjct: 97 QVASYPVAVGKPGWETPTGQFQVIQMVENPTWQNP------------------------- 131 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTYMHDTPEPI 330 EV PG +A+ I F+ ++ H TP Sbjct: 132 ----WTGEVS------------------SPGPNSALGLRWIGFWTDGKDTIGFHGTPTVN 169 Query: 331 LFNNVVRFETSGCVRVRN 348 R + GCVR+RN Sbjct: 170 SIG---RAASHGCVRMRN 184 >gi|87199978|ref|YP_497235.1| ErfK/YbiS/YcfS/YnhG [Novosphingobium aromaticivorans DSM 12444] gi|87135659|gb|ABD26401.1| ErfK/YbiS/YcfS/YnhG [Novosphingobium aromaticivorans DSM 12444] Length = 379 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 84/321 (26%), Gaps = 83/321 (25%) Query: 104 LGNSSVS------VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G + + V + + L G + +AV+ FQ +G+ SG Sbjct: 50 PGQPAPAEDMPRPVMQAQVVLERLGFAP--GIIDGKEGLSTRNAVQGFQEANGIAVSGNF 107 Query: 158 DSSTLEAMNV---PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 D +T++A+ R+ + + E Sbjct: 108 DRATMQALARWSNIPATRLVTIPDDFAHGP-FAPLPKEPAAQAKLKALGYASLEEKLAER 166 Query: 215 LRSTVIVGRVD------------------RQTPILHSRINRIMFNPYW------------ 244 +T V R R+TP+++ +I Sbjct: 167 FHTTPEVLRALNAPPVQQPIASSAAVEATRRTPVIYRAGQQIRVPNVGADAIDPVAVGDQ 226 Query: 245 -------------VIPRSIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEV-D 287 P+ + +++ + +N + G E + + Sbjct: 227 GALETMASLGVGSNQPK--AGRIVVSEHAGTLKAFDASNKLVALFTVTTGSEHDPLPLGN 284 Query: 288 WNSPEP-PNFIFR-----------------QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 W N FR PG + I+ + +H TPEP Sbjct: 285 WKIYSSSFNPHFRYDASLFWDVPDSKGEHLLPPGPNGPVGVVWIDLSKEH-YGIHGTPEP 343 Query: 330 ILFNNVVRFETSGCVRVRNII 350 R E+ GCVR+ N Sbjct: 344 QTIG---RTESHGCVRLTNWD 361 >gi|56750889|ref|YP_171590.1| hypothetical protein syc0880_c [Synechococcus elongatus PCC 6301] gi|56685848|dbj|BAD79070.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 208 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 42/159 (26%), Gaps = 54/159 (33%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + + V +G+ +TP R+ + NP W P Sbjct: 90 QRRVTVYRDRLAIASYPVGIGKPGWETPRGTFRVMSKIVNPTWQHPW------------- 136 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRN 319 G V PG N + I F+ +N Sbjct: 137 ---------------NGSLV-------------------PPGPNNPLGDRWIGFWTDGKN 162 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + H T L + GCVR++N I L + Sbjct: 163 SIGFHGTTAESLIGQ---AVSHGCVRMKNRDIRALFELV 198 >gi|238791662|ref|ZP_04635299.1| hypothetical protein yinte0001_13750 [Yersinia intermedia ATCC 29909] gi|238728766|gb|EEQ20283.1| hypothetical protein yinte0001_13750 [Yersinia intermedia ATCC 29909] Length = 355 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 42/222 (18%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N D + L ++L +++N+ L Sbjct: 56 IAADYKIGLLGMLEANPGADPYLPLPGSVLTIPTQMLLPDTPREGIVINLAELRLYYYPK 115 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 G+ + + +G++ R TP + + +++ + NP W P + I+K +A Sbjct: 116 GQSKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTWT-PTANIRKHYLAQ----------- 163 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 G N M + + Y +H T Sbjct: 164 -----------------------GVTLPSVVPAGPENPMGLFAMRLSAGGGEYLIHGTNA 200 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 F +R +SGC+R+R D+ L P +R I Sbjct: 201 N--FGIGMR-VSSGCIRLR-PDDI-KALFSSVPKGTRVQIVN 237 >gi|149187438|ref|ZP_01865736.1| hypothetical protein VSAK1_17982 [Vibrio shilonii AK1] gi|148838974|gb|EDL55913.1| hypothetical protein VSAK1_17982 [Vibrio shilonii AK1] Length = 303 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L E K + V +GR+ + TP + ++I+++ P W P SI +K+ Sbjct: 94 IVINLAELRLYYFEPDKNLVHIFPVGIGRIGQDTPEMTTKISQLREAPTWTPPTSI-RKE 152 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +A G N + + Sbjct: 153 YLAK----------------------------------GVELPKVVPAGPENPLGDYAMR 178 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +Y +H T + F +R ++GC+R+ + D+ WL + I + Sbjct: 179 LAYGTGSYLIHGTNKD--FGIGLR-VSAGCIRM-DPKDI-DWLFHQAKVGMQVRIID--- 230 Query: 374 TRKTTPVKLATEVPVHF 390 + + L + V Sbjct: 231 --EPIKIALEPDRSVFI 245 >gi|304397642|ref|ZP_07379519.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] gi|304354814|gb|EFM19184.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] Length = 341 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 64/211 (30%), Gaps = 55/211 (26%) Query: 173 IRQLQVNLMRIKKLLEQ-------------KMGLRYVLVNIPAASLEAVENGKVG-LRST 218 + L+ N L + ++VN+ L G+ + Sbjct: 64 LGLLEANPGTDPWLPKAGTQLTVPLQMILPDTPREGIVVNLAELRLYYYPKGEDKVIVYP 123 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + +G++ TP++ ++I++ + NP W +I ++ Sbjct: 124 IGIGQLGAATPVMVTQISQKIPNPTWTPTPNIRKR------------------------- 158 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVR 337 + E G N M + Y +H T F +R Sbjct: 159 ----------YAKEGITLPGVVPAGPDNPMGQFAMRLARGTGQYLIHGTNAK--FGIGMR 206 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 +SGC+R+R + L P +R I Sbjct: 207 -VSSGCIRLR--SEDIEALFNAAPKGTRVQI 234 >gi|262273986|ref|ZP_06051798.1| hypothetical protein VHA_000962 [Grimontia hollisae CIP 101886] gi|262221796|gb|EEY73109.1| hypothetical protein VHA_000962 [Grimontia hollisae CIP 101886] Length = 320 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 41/163 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + + + + +GR+ R TPI+ ++I++ NP W P S+ ++ Sbjct: 98 IVINLAELRLYYFDTDNRKVHVFPIGIGRIGRDTPIMQTKISQKRENPTWTPPASLRKE- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 YL++ NI + G N + + + Sbjct: 157 ----------YLEERNIVL-----------------------PDVVPAGPDNPLGTHALR 183 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 +Y +H T + F +R ++GC+R+R D+ WL Sbjct: 184 LAYGTGSYLIHGTNK--SFGIGLR-VSAGCIRMR-PTDIV-WL 221 >gi|237756813|ref|ZP_04585300.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691029|gb|EEP60150.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 468 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 74/215 (34%), Gaps = 50/215 (23%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRV 224 P D+R Q+ V ++ + L + + +NI L + + + + +G Sbjct: 257 PFDIRKNQIIVVPLK-RILPVKDFKYGTIYINIYEKRLYYPIKINDESYVITYPIGIGTD 315 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 D Q+PI +I++ +P W P SI ++ Sbjct: 316 DAQSPIGEFKISQKRKDPAWYPPESIRKEQ------------------------------ 345 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 P+ PG N + + + + + MH T + + GC+ Sbjct: 346 ---------PDLPPVFPPGPDNPLGTRAMRLGNT-SFLMHGTNKEYGIGMK---VSHGCI 392 Query: 345 RV--RNIIDLDVWLLKDTPTWSRYHIEEV-VKTRK 376 R+ ++ L + TP SR + ++ V + K Sbjct: 393 RMYNEDVEKLFEVVDIGTPIVSRENPYKIFVNSGK 427 >gi|300716485|ref|YP_003741288.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299062321|emb|CAX59438.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 344 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 55/211 (26%) Query: 173 IRQLQVNLMRIKKLLEQ-------------KMGLRYVLVNIPAASLEAVENGK-VGLRST 218 + L+ N L + ++VN+ L G+ + Sbjct: 63 LGMLEANPGTDPWLPKAGSQLTIPTQMLLPDTKREGIVVNVAELRLYYYPKGENKVVVYP 122 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + +G++ TP + + +++ + NP W +I ++ Sbjct: 123 IGIGQLGANTPPMVTSVSQKIPNPTWTPTPNIRKR------------------------- 157 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVR 337 + E G N M + Y +H T F +R Sbjct: 158 ----------YAAEGKTLPVTVPAGPDNPMGLYAMRLAYGQGHYLIHGTNAD--FGIGMR 205 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 +SGC+R+R D+ L P +R I Sbjct: 206 -VSSGCIRLR-PDDI-EALFNSVPKGTRVQI 233 >gi|238787126|ref|ZP_04630926.1| hypothetical protein yfred0001_6120 [Yersinia frederiksenii ATCC 33641] gi|238724914|gb|EEQ16554.1| hypothetical protein yfred0001_6120 [Yersinia frederiksenii ATCC 33641] Length = 355 Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 71/220 (32%), Gaps = 42/220 (19%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N D + L ++L +++N+ L Sbjct: 56 IAADYKIGLLGMLEANPGADPYLPLPGSVLTIPTQMLLPDTPREGIVINLAELRLYYYPK 115 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 G+ + + +G++ R TP + + +++ + NP W P + I+K + Sbjct: 116 GQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTWT-PTANIRKHYL------------- 161 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 E G N M + + Y +H T Sbjct: 162 ---------------------AEGVTLPAVVPAGPENPMGLFAMRLAAGGGEYLIHGTNA 200 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 F +R +SGC+R+R D+ L K P +R I Sbjct: 201 --NFGIGMR-VSSGCIRLR-PDDI-EALFKSVPKGTRVQI 235 >gi|294636112|ref|ZP_06714538.1| ErfK/YbiS/YcfS/YnhG family protein [Edwardsiella tarda ATCC 23685] gi|291090579|gb|EFE23140.1| ErfK/YbiS/YcfS/YnhG family protein [Edwardsiella tarda ATCC 23685] Length = 337 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 42/184 (22%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + +G++ R TP + +R+++ + +P W Sbjct: 95 DAPREGIVINLAELRLFYYPPGGERVEVYPIGIGQLGRNTPEMVTRVSQHIKDPTWTPTA 154 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + + G N M Sbjct: 155 NIRRH-----------------------------------YREQGITLPAVMPAGPDNPM 179 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + ++ Y +H T F +R +SGC+R+R D+ L + P +R Sbjct: 180 GRYALRLAAQGGVYLIHGTNAD--FGIGMR-VSSGCIRLR-PDDI-EALFRSVPGNTRVQ 234 Query: 368 IEEV 371 I Sbjct: 235 IVNQ 238 >gi|88859637|ref|ZP_01134277.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Pseudoalteromonas tunicata D2] gi|88818654|gb|EAR28469.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Pseudoalteromonas tunicata D2] Length = 306 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 83/227 (36%), Gaps = 42/227 (18%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVG 222 A N VD + QL+ + +++ ++VN+P L E K + + +G Sbjct: 65 AANPNVDPLLPQLETQITLPTQMILPSTAQVGIVVNLPELRLYYFEPEKSQVHVYPIGIG 124 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + +TP+ S I++ +P W++P + ++ YL + NI + Sbjct: 125 QKGHRTPVTRSFISQKRKSPDWIVPEPLRKR-----------YLTEKNIVL--------- 164 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 G N + S + +H T + F +SG Sbjct: 165 --------------PPIVPAGPDNPLGSYAMRLGKSE-YLIHGTNQR--FGIG-LSVSSG 206 Query: 343 CVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 C+R+ +I +L + +TP +++ T + T V L P Sbjct: 207 CIRMFESDIEELFNRVELNTPVRIIDQPVKLLLTEQNT-VYLEVHSP 252 >gi|238919740|ref|YP_002933255.1| hypothetical protein NT01EI_1844 [Edwardsiella ictaluri 93-146] gi|238869309|gb|ACR69020.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 340 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 42/184 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ R TP + +RI++ + +P W Sbjct: 94 DAPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRDTPEMVTRISQHIKDPTWTPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + + + G N M Sbjct: 154 NIRRD-----------------------------------YQAQGISLPAVMPAGPDNPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + ++ Y +H T F +R +SGC+R+R D+ L + P +R Sbjct: 179 GRFALRLAAQGGVYLIHGTNAD--FGIGMR-VSSGCIRLR-PDDI-EALFRSVPGGTRVQ 233 Query: 368 IEEV 371 I Sbjct: 234 IVNQ 237 >gi|242239100|ref|YP_002987281.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] gi|242131157|gb|ACS85459.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] Length = 327 Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L GK + + +G++ R TP++ +R+ NP W+ Sbjct: 94 DTPREGIVVNLAELRLYYFPKGKGTVIVYPIGIGQLGRNTPVMVTRVIERRPNPTWIPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + + + G N M Sbjct: 154 NIRRH-----------------------------------YKEQGIDLPAVVPGGPDNPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + Y +H T F +R +SGC+R+R D+ L D P +R Sbjct: 179 GLFALRLEKSGGVYSIHGTNAN--FGIGMR-VSSGCIRLR-PEDI-EALFNDVPVGTRVQ 233 Query: 368 I 368 I Sbjct: 234 I 234 >gi|81299458|ref|YP_399666.1| hypothetical protein Synpcc7942_0647 [Synechococcus elongatus PCC 7942] gi|81168339|gb|ABB56679.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 180 Score = 87.4 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 42/159 (26%), Gaps = 54/159 (33%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + + V +G+ +TP R+ + NP W P Sbjct: 62 QRRVTVYRDRLAIASYPVGIGKPGWETPRGTFRVMSKIVNPTWQHPW------------- 108 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRN 319 G V PG N + I F+ +N Sbjct: 109 ---------------NGSLV-------------------PPGPNNPLGDRWIGFWTDGKN 134 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + H T L + GCVR++N I L + Sbjct: 135 SIGFHGTTAESLIGQ---AVSHGCVRMKNRDIRALFELV 170 >gi|330860174|emb|CBX70495.1| hypothetical protein YEW_AT04140 [Yersinia enterocolitica W22703] Length = 112 Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + AVK FQ HGL G++ + T E +NV R L +N+ R++ Sbjct: 14 TATVTDNVYTPELMEAVKRFQRWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRI 73 Query: 186 LLEQKMGLRYVLVNIPAASLEAVEN 210 L + ++VNIP SL + Sbjct: 74 LPGRV--DNGIMVNIPNYSLNYYKK 96 >gi|308186671|ref|YP_003930802.1| Protein erfK/srfK precursor [Pantoea vagans C9-1] gi|308057181|gb|ADO09353.1| Protein erfK/srfK precursor [Pantoea vagans C9-1] Length = 341 Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 77/254 (30%), Gaps = 56/254 (22%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 RLI L +ES +Q+ GL + T + L Sbjct: 35 RLIGENVLTQVPDDKQ----PLESIAARYQV--GLLGMLEANPGTDPWLPKAGTQLTVPL 88 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRI 235 Q+ L ++VN+ L G+ + + +G++ TP++ ++I Sbjct: 89 QMIL--------PDTPREGIVVNLAELRLYYYPKGEDKVIVYPIGIGQLGAATPVMVTQI 140 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 ++ + NP W +I ++ + E Sbjct: 141 SQKIPNPTWTPTPNIRKR-----------------------------------YAKEGIT 165 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 G N M + Y +H T F +R +SGC+R+R + Sbjct: 166 LPGVVPAGPDNPMGQFAMRLARGTGQYLIHGTNAK--FGIGMR-VSSGCIRLR--SEDIE 220 Query: 355 WLLKDTPTWSRYHI 368 L P +R I Sbjct: 221 ALFNAAPKGTRVQI 234 >gi|238753642|ref|ZP_04615004.1| hypothetical protein yruck0001_13730 [Yersinia ruckeri ATCC 29473] gi|238708194|gb|EEQ00550.1| hypothetical protein yruck0001_13730 [Yersinia ruckeri ATCC 29473] Length = 346 Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 47/204 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ R TP + + +++ + NP W P Sbjct: 95 DTPREGIVINLAELRLYYYPKGQDKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTWT-PT 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + I+K +A G N M Sbjct: 154 ANIRKHYLAQ----------------------------------GVTLPAVVPAGPENPM 179 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-- 365 + + Y +H T F +R +SGC+R+R D+ L P +R Sbjct: 180 GLFAMRLAAGGGEYLIHGTNA--NFGIGMR-VSSGCIRLR-PDDI-QALFSSVPKGTRVQ 234 Query: 366 ---YHIEEVVKTRKTTPVKLATEV 386 I+ V+ V++ + Sbjct: 235 VINEPIKYSVEPDGKRYVEVHQPL 258 >gi|158334241|ref|YP_001515413.1| ErfK/YbiS/YcfS/YnhG family protein [Acaryochloris marina MBIC11017] gi|158304482|gb|ABW26099.1| ErfK/YbiS/YcfS/YnhG family protein [Acaryochloris marina MBIC11017] Length = 201 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 56/214 (26%) Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNL---MRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 ++ T+ + +V + L + + L G R + ++I + + + Sbjct: 31 VISVGTIASFDVAQAAEQNIPETPLPGLDQPRNYLPSAHGTRRLELSISRRQVTLFQGDQ 90 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V V VG+ TP+ + + NP W P + Sbjct: 91 VLKSYPVAVGKAGWPTPVGDFEVQTKVRNPSWQNP------------------FQGKGYV 132 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFY--SRNNTYMHDTPEP 329 + G N +++ + F+ +N H TP Sbjct: 133 I---------------------------PGGAPDNPLSTRWLGFWTNGKNWIGFHGTPNR 165 Query: 330 ILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + GCVR+ +I +L + TP Sbjct: 166 ASVGS---AASHGCVRMYDEHIQELFELVAVGTP 196 >gi|197117361|ref|YP_002137788.1| peptidoglycan L,D-transpeptidase [Geobacter bemidjiensis Bem] gi|197086721|gb|ACH37992.1| peptidoglycan L,D-transpeptidase, YkuD family, LysM domain-containing protein [Geobacter bemidjiensis Bem] Length = 307 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 46/173 (26%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKV--GLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ + ++VN+ L GK + +G +TP+ + + + +P Sbjct: 100 WIVPRVQSDPDIVVNLAEYRLYLFPQGKFGAVFTFPLGIGDEGAETPLGTYTVIQKITSP 159 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI + P P Sbjct: 160 SWHVPDSIRHE---------------------------------------VPGLPSIVPP 180 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G N + + + R N +H T P R + GC+R+ D+ Sbjct: 181 GPSNPLGTHALRLS-RANILIHGTNRPWGIG---RRSSHGCLRLY-PEDIATL 228 >gi|317047896|ref|YP_004115544.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] gi|316949513|gb|ADU68988.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] Length = 344 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 47/204 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ TP++ + I++ + NP W Sbjct: 94 DTPHEGIVINLAELRLYYYPKGEDRVIVYPIGIGQLGAATPVMVTSISQKIPNPTWTPTP 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I ++ + E G N M Sbjct: 154 NIRKR-----------------------------------YAKEGITLPGVVPAGPDNPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + Y +H T F +R +SGC+R+R D+ L P +R Sbjct: 179 GLFAMRLARGTGQYLIHGTNAD--FGIGMR-VSSGCIRLR-PEDI-EALFDSVPKGTRVQ 233 Query: 368 -----IEEVVKTRKTTPVKLATEV 386 ++ ++ +++ + Sbjct: 234 VINQPVKYAIEPDGKRYIEVHQPL 257 >gi|328954135|ref|YP_004371469.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] gi|328454459|gb|AEB10288.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] Length = 346 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 77/239 (32%), Gaps = 66/239 (27%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +L + +L+N+P +L + R + VG+ D QTP I + NP Sbjct: 89 RFILPNDLTD-GLLINLPELTLYHFDKEVFRRRYALAVGKSDWQTPTGTYIILNKVKNPT 147 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W++P SI ++ +++ ++ R PG Sbjct: 148 WIVPASIQEE------------MEEMGKTVLT-----------------------RVPPG 172 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + + + +H T P + + GC+R+ +++ + Sbjct: 173 PTNPLGAYWMATSAP-GVGIHATTRPWSIGY---YASHGCIRML-PDEIEELFGQVEVGT 227 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII--QFRDDIYGL--DNVHVG 418 I + PV D+ I + D+Y D++ + Sbjct: 228 LVKIIYK----------------PVKLA-----VTPDNRIFLEVHRDVYKKIPDSLAMA 265 >gi|188996949|ref|YP_001931200.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932016|gb|ACD66646.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 464 Score = 87.0 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 48/189 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + L + + +NI L + + + + +G + Q+PI +I++ Sbjct: 267 KRILPVKDFKYGMIYINIYEKRLYYPIKINDESYVITYPIGIGADEAQSPIGEFKISQKR 326 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 +P W P SI ++ P+ Sbjct: 327 KDPAWYPPESIRKEQ---------------------------------------PDLPPV 347 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLL 357 PG N + + + + + MH T + + GC+R+ ++ L + Sbjct: 348 FPPGPDNPLGTRAMRLGNT-SFLMHGTNKEYGIGMK---VSHGCIRMYNEDVEKLFEVVD 403 Query: 358 KDTPTWSRY 366 TP SR Sbjct: 404 IGTPIVSRE 412 >gi|149377350|ref|ZP_01895095.1| putative ErfK/YbiS/YcfS/YnhG family protein [Marinobacter algicola DG893] gi|149358362|gb|EDM46839.1| putative ErfK/YbiS/YcfS/YnhG family protein [Marinobacter algicola DG893] Length = 355 Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 44/199 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + +++N+ L GKV V VG D +P+ ++++ + +P W P S Sbjct: 116 DVKREGIIINLAEYRLYYFTEGKVQ-VYPVGVGTDDNPSPLTNAKVTMPLESPAWYPPAS 174 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I + PG N + Sbjct: 175 IRAE-----------------------------------YEAAGEYLPRMIPPGPGNPLG 199 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 S + + +H T + LF + + GC R+ N D+ ++ + + I Sbjct: 200 SHALMLSEK-GYLIHGTNK--LFGVGM-QVSHGCFRMYN-EDISRFVYEVSKGTPVQVIR 254 Query: 370 EVVK---TRKTTPVKLATE 385 E VK +++ Sbjct: 255 EPVKIGLKGNEVWLEVHRP 273 >gi|206889744|ref|YP_002249108.1| LysM domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741682|gb|ACI20739.1| LysM domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 309 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 49/183 (26%) Query: 185 KLLEQKMGLRY-VLVNIPAASLEAVEN---GKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +L ++ +++N+ L ++ + +G +TP+ +I+ + Sbjct: 86 WILPDRVNNFQGIIINLSEMRLYYFHKKSKEQLVTTFPIGIGDDGVETPMGKFKISHKIV 145 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P SI Q+ P Sbjct: 146 NPPWYVPESIKQER---------------------------------------PELPAVV 166 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLK 358 PG N + + + + +H T P R T GC+R+ +I L + Sbjct: 167 PPGPENPLGTHAMRLS-GLSYLIHGTNRPWAVG---RKVTHGCIRLYPEDIPKLFDIVPV 222 Query: 359 DTP 361 T Sbjct: 223 GTE 225 >gi|30249623|ref|NP_841693.1| hypothetical protein NE1659 [Nitrosomonas europaea ATCC 19718] gi|30138986|emb|CAD85570.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 326 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 75/224 (33%), Gaps = 55/224 (24%) Query: 147 MRHGLDPSGMV--DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 +G+ MV + +T + + L R +++G +++N+P Sbjct: 60 RHYGIGQDEMVLANPNTNRWLPEDGAEVVLPL-----RFIIPQAERIG---LVINLPEMR 111 Query: 205 LEAVEN---GK--VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L G+ + V +GR+D TP+ + I R +P W P+S+ + + Sbjct: 112 LYYFPKPAKGQKPEIITHPVSIGRMDWNTPLGRTTIVRKQKDPTWTPPQSLKAEAI---- 167 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + P PG N + + Sbjct: 168 ------------------------------AEGKPPLSDVVPPGPDNPLGRYALYLGLP- 196 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 +H T +P F +R T GC+R+ +I +L + TP Sbjct: 197 GYLIHSTNKP--FGVGMR-VTHGCMRLYPEDIEELFNLVPTGTP 237 >gi|220929989|ref|YP_002506898.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulolyticum H10] gi|220000317|gb|ACL76918.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulolyticum H10] Length = 307 Score = 86.6 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 71/248 (28%), Gaps = 63/248 (25%) Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G + + +A+ LFQ H + +G D++T + +++L N Sbjct: 97 QLGYYKKASSDEKL---NIRNALLLFQSNHNMSVTGAYDTATKNML-------VQRLSSN 146 Query: 180 -LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 + + K+ + ++V VN L E KV + V VG T + Sbjct: 147 KFVYLDKVTKAPTKGKWVTVNKTTRVLTLYEGTKVLKKYAVAVGNPASLTKSGKFIVTSK 206 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 + NP W G Sbjct: 207 LKNPDW-------------------------------GGGGFADP--------------- 220 Query: 299 RQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVW 355 + N + + + + +H T + + GC+R+ N + +L Sbjct: 221 VKGGTPQNPLGTRWLGINRTDGSYGIHGTNSFYSIGK---YISHGCMRMSNHCVEELFPL 277 Query: 356 LLKDTPTW 363 + P W Sbjct: 278 VPMKAPVW 285 >gi|238749439|ref|ZP_04610944.1| hypothetical protein yrohd0001_27560 [Yersinia rohdei ATCC 43380] gi|238712094|gb|EEQ04307.1| hypothetical protein yrohd0001_27560 [Yersinia rohdei ATCC 43380] Length = 351 Score = 86.6 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 42/220 (19%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-E 209 + + + N D + L ++L +++N+ L + Sbjct: 56 IAADYKIGLLGMLEANPGADPYLPLPGSVLTIPTQMLLPDTPREGIVINLAELRLYYYPK 115 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + + + +G++ R TP + + +++ + NP W P + I+K + Sbjct: 116 DQNKVVVYPIGIGQLGRNTPTMTTSVSQKIPNPTWT-PTANIRKHYL------------- 161 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 E G N M + + Y +H T Sbjct: 162 ---------------------AEGVTLPAVVPAGPENPMGLFAMRLAAGGGEYLIHGTNA 200 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 F +R +SGC+R+R D+ L K P +R I Sbjct: 201 N--FGIGMR-VSSGCIRLR-PDDI-EALFKSVPKGTRVQI 235 >gi|158423350|ref|YP_001524642.1| signal transduction protein [Azorhizobium caulinodans ORS 571] gi|158330239|dbj|BAF87724.1| signal transduction protein [Azorhizobium caulinodans ORS 571] Length = 406 Score = 86.2 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 66/283 (23%), Gaps = 48/283 (16%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM---R 182 + A+ F+ ++ L +D +T A+ P I R Sbjct: 138 SPGEIDGMDGENYRKALAQFRRQNALGEGDRLDEATWAALGGPTTTDIVTTYTVTAKDAR 197 Query: 183 IKKLLEQKMGLRYVLVNIP--AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 ++ + + E + + + + I Sbjct: 198 MR-FPRTIPHDFAKQARMKRLDFT-SPTEMYAERFHMSEGLLKALNPRLKTLKAGDAISV 255 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--------------GKEVFVEEV 286 + + M A+ L +I +V Sbjct: 256 LQVAHDRPTQPVERMEAVKATGMLVLYGPGDAIIASYPATIGSADTPSPEGDYKVLRIAH 315 Query: 287 DWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 D P F+Q PG N + + I +H TP P + Sbjct: 316 DPRYEYDPKKNFQQGRNTRRLMLPPGPNNPVGTVWIALSKP-TFGIHGTPAPSQVSKTS- 373 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 + GCVR+ N W + ++K Sbjct: 374 --SHGCVRLTN--------------WDAEEVAALIKPGVKMRF 400 >gi|183598859|ref|ZP_02960352.1| hypothetical protein PROSTU_02291 [Providencia stuartii ATCC 25827] gi|188021066|gb|EDU59106.1| hypothetical protein PROSTU_02291 [Providencia stuartii ATCC 25827] Length = 357 Score = 86.2 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 42/179 (23%) Query: 192 GLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L E K + + +G++ R TP + + +++ + +P W +I Sbjct: 94 PRTGIIINLAELRLYYYPEGSKEVVVYPIGIGQLGRDTPEMVTSVSQSIKDPTWTPTANI 153 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + E G N M Sbjct: 154 RKN-----------------------------------YAKEGITLPAVVPAGPDNPMGL 178 Query: 311 TKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + Y +H T F +R +SGC+R+R D+ L K P +R + Sbjct: 179 YALRLAYGRGEYLIHGTNAD--FGIGMR-VSSGCIRLR-PDDI-EALFKTVPKGTRVQV 232 >gi|268592601|ref|ZP_06126822.1| ErfK/YbiS/YcfS/YnhG family protein [Providencia rettgeri DSM 1131] gi|291312015|gb|EFE52468.1| ErfK/YbiS/YcfS/YnhG family protein [Providencia rettgeri DSM 1131] Length = 354 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 43/191 (22%) Query: 192 GLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++N+ L N + + + +G++ R TP + + +++ + +P W +I Sbjct: 94 PRTGIVINLAELRLYYYPANSEEVIVYPIGIGQLGRDTPEMVTSVSQSIKDPTWTPTANI 153 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + E G N M Sbjct: 154 RKN-----------------------------------YAKEGITLPAVVPAGPENPMGL 178 Query: 311 TKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-YHI 368 + Y +H T F +R +SGC+R+R D+ L K P +R I Sbjct: 179 YALRLAYGRGEYLIHGTNAD--FGIGMR-VSSGCIRLR-PDDI-EALFKTVPKGTRVQVI 233 Query: 369 EEVVKTRKTTP 379 ++ VK K T Sbjct: 234 DQPVKYSKETD 244 >gi|238757747|ref|ZP_04618930.1| hypothetical protein yaldo0001_35040 [Yersinia aldovae ATCC 35236] gi|238703990|gb|EEP96524.1| hypothetical protein yaldo0001_35040 [Yersinia aldovae ATCC 35236] Length = 351 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 42/183 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ R TP + + +++ + NP W P Sbjct: 95 DTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTWT-PT 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + I+K +A G N M Sbjct: 154 ANIRKHYLAQ----------------------------------GVTLPSVVPAGPENPM 179 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T F +R +SGC+R+R D+ L P +R Sbjct: 180 GLFAMRLAAGRGEYLIHGTNAN--FGIGMR-VSSGCIRLR-PDDI-QALFSTVPKGTRVQ 234 Query: 368 IEE 370 I Sbjct: 235 IVN 237 >gi|148266086|ref|YP_001232792.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter uraniireducens Rf4] gi|146399586|gb|ABQ28219.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter uraniireducens Rf4] Length = 292 Score = 86.2 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 57/182 (31%), Gaps = 48/182 (26%) Query: 185 KLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++ + +++N+ L + ++ + +G + TP+ R+ + + N Sbjct: 85 WIVPASLKWGGIVINLSEMRLYYSFSFKGARLIASFPIGIGDEGKDTPVGTFRVIQKIEN 144 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P+S+ + P Sbjct: 145 PSWYVPQSVKME---------------------------------------KPELPDVVP 165 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKD 359 PG N + + + +H T +P R + GC+R+ +I L + Sbjct: 166 PGPDNPLGTHAMRLS-ERTILIHGTNKPWGVG---RRVSHGCIRLYPEDIPRLYRLVAVG 221 Query: 360 TP 361 TP Sbjct: 222 TP 223 >gi|238796357|ref|ZP_04639866.1| hypothetical protein ymoll0001_21850 [Yersinia mollaretii ATCC 43969] gi|238719802|gb|EEQ11609.1| hypothetical protein ymoll0001_21850 [Yersinia mollaretii ATCC 43969] Length = 289 Score = 86.2 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L ++ + + +G++ R TP + + +++ + NP W P Sbjct: 29 DTPREGIVINLAELRLYYYPKDQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTWT-PT 87 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + I+K + E G N M Sbjct: 88 ANIRKHYL----------------------------------AEGVTLPAVVPAGPENPM 113 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T F +R +SGC+R+R D+ L K P +R Sbjct: 114 GLFAMRLSAGRGEYLIHGTNAN--FGIGMR-VSSGCIRLR-PDDI-EALFKSVPKGTRVQ 168 Query: 368 I 368 I Sbjct: 169 I 169 >gi|332712211|ref|ZP_08432139.1| hypothetical protein LYNGBM3L_72340 [Lyngbya majuscula 3L] gi|332349017|gb|EGJ28629.1| hypothetical protein LYNGBM3L_72340 [Lyngbya majuscula 3L] Length = 205 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 52/154 (33%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 ++ + L K+ V +G+ +TP + ++ +++ NP W P + Sbjct: 82 VIKLSERRLYVYRGDKLEASYPVAIGQPGWETPTGNFQVTQMVQNPVWKHPLT------- 134 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 G+ V PG N + + F+ Sbjct: 135 ---------------------GEVV-------------------APGPENPLGPRWMAFW 154 Query: 317 SR--NNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S N H T + L + GC+R+RN Sbjct: 155 SDGTNYIGFHGTNDEELVGQ---AVSHGCIRMRN 185 >gi|322833496|ref|YP_004213523.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] gi|321168697|gb|ADW74396.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] Length = 337 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 42/184 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L G+ + + +G++ R TP + + +++ + NP W P Sbjct: 95 DTKREGIVVNLAEMRLYYYPKGEDKVIVYPIGIGQLGRNTPEMVTSVSQKIPNPTWT-PT 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + I+K + E G N M Sbjct: 154 ANIRKAYLK----------------------------------EGITLPGMVPAGPDNPM 179 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T F +R +SGC+R+R D+ L P +R Sbjct: 180 GLFAMRLSAGTGQYLIHGTNAN--FGIGMR-VSSGCIRLR-PDDI-EALFNSVPKGTRVQ 234 Query: 368 IEEV 371 I Sbjct: 235 IVNQ 238 >gi|167041966|gb|ABZ06703.1| putative ErfK/YbiS/YcfS/YnhG [uncultured marine microorganism HF4000_141E02] Length = 313 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 40/157 (25%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + +N+ N + + V +GR+D TP+ S+++ + NP W P S+ Q+ Sbjct: 104 MTINLAEYR-GFFANDEELITFPVGIGRMDWTTPLGISKVDLKLENPAWYPPLSVRQE-- 160 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 E G N + + Sbjct: 161 ---------------------------------YQEEGIYLAPVIPAGPDNPLGKLAMRL 187 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 ++H T +P + GC+R+ D+ Sbjct: 188 DIPGGYFIHGTNKPDGVGM---QVSHGCIRLF-PEDI 220 >gi|29654868|ref|NP_820560.1| LysM domain-containing protein [Coxiella burnetii RSA 493] gi|161831280|ref|YP_001597412.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii RSA 331] gi|29542137|gb|AAO91074.1| hypothetical exported protein [Coxiella burnetii RSA 493] gi|161763147|gb|ABX78789.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii RSA 331] Length = 314 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGL-RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +++N+ A L GK V +GR + TP+ I + + NP WV+P Sbjct: 90 PVPKEGIVINLAAMRLYYFPKGKNYFYTYPVGIGRFNWSTPLGKLHIIQKIKNPVWVVPD 149 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI++ G N + Sbjct: 150 SILRYR-----------------------------------QENGDPVPKMMPSGPENPL 174 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H T +P R ++GC+ + +I L + DTP Sbjct: 175 GYYALRLSQP-TYLIHGTNDPSSVG---RRSSAGCIHLYPEDIKALFGMVSVDTP 225 >gi|117619077|ref|YP_855859.1| LysM domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560484|gb|ABK37432.1| LysM domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 305 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 82/243 (33%), Gaps = 52/243 (21%) Query: 157 VDSST------LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + T L N VD + + L ++L + +++N+P L Sbjct: 53 IGKHTQIGFLALLEANPGVDPYLPKPGTRLTLPTQMLLPNVPREGIVINLPELRLYYFPK 112 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 GK + + +G + R+TP + + + NP W +P +++K Sbjct: 113 GKNEVMVLPIGIGDIGRETPEMTTTVIAKNPNPTW-VPGPMVRK---------------- 155 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 W + PG N + + Y +H T + Sbjct: 156 -----------------SWLEQKGITLPAVVPPGPDNPLGKFAMRLGYGKQDYLIHGTNK 198 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-----IEEVVKTRKTTPVKLA 383 F +R ++GC+R+R D+ L K P ++ ++ ++ +++ Sbjct: 199 D--FGVGLR-VSAGCIRLR-PDDI-EALFKIVPIGTQVRVINQPVKTAIEPDGRHWLEVH 253 Query: 384 TEV 386 + + Sbjct: 254 SPL 256 >gi|77919622|ref|YP_357437.1| hypothetical protein Pcar_2026 [Pelobacter carbinolicus DSM 2380] gi|77545705|gb|ABA89267.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 303 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 59/235 (25%), Gaps = 60/235 (25%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-------------LRYVLVNIPAA 203 V + +E + + N L + +N+ Sbjct: 53 VGETLIEIARQAGLGYLALCRANPDTDPWLPPAGDKIILPYAFLLPTDIKPGITINLAEF 112 Query: 204 SLEAV---ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 L V +N V +G TP I + +P W P SI ++ Sbjct: 113 RLYYVWQEQNRLRVRVYPVGIGSSGWDTPQGEFEITEKIVHPVWYAPASIRKE------- 165 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 P R G N + + Sbjct: 166 --------------------------------NPRLAARIPAGPDNPLGEYWLGLS-ARG 192 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 +H T +P R + GC+R+ D+ + P + I + VKT Sbjct: 193 YGIHGTSKPYGVG---RRISHGCLRLY-PADIRDLFARVKPGTTVRIIRQPVKTG 243 >gi|330829008|ref|YP_004391960.1| LysM domain-containing protein [Aeromonas veronii B565] gi|328804144|gb|AEB49343.1| LysM domain protein [Aeromonas veronii B565] Length = 318 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 84/251 (33%), Gaps = 49/251 (19%) Query: 146 QMRHGLDPSGM---VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 Q L+ G + L N VD + + L ++L + +++N+P Sbjct: 53 QQNEHLELVGKNTQIGFLALLEANPGVDPYLPKPGTRLTLPTQMLLPDVPREGIVINLPE 112 Query: 203 ASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L GK + + +G + R+TP + + + NP W +P +++K Sbjct: 113 LRLYYFPKGKSEVIVLPIGIGDIGRETPEMTTTVIEKNPNPTW-VPGPMVRK-------- 163 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS-RNN 320 W + PG N + + + + Sbjct: 164 -------------------------SWLEQKGITLPAVVPPGPENPLGKFAMRLGYGKRD 198 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE-----VVKTR 375 +H T + F +R ++GC+R+R D+ L K P + + ++ Sbjct: 199 YLIHGTNKE--FGVGLR-VSAGCIRLR-PDDI-EALFKIVPIGTPVRVINQPVKVAIEPD 253 Query: 376 KTTPVKLATEV 386 +++ + + Sbjct: 254 GRRWLEVHSPL 264 >gi|149911553|ref|ZP_01900167.1| hypothetical protein PE36_11747 [Moritella sp. PE36] gi|149805398|gb|EDM65408.1| hypothetical protein PE36_11747 [Moritella sp. PE36] Length = 287 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 73/213 (34%), Gaps = 41/213 (19%) Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 H L + L A N VD + L +L + + +++N+P L Sbjct: 37 HSLSQQYNIGLIALMASNPTVDPFLPSPGTRLDLPTLMLLPDVEHKGIVINLPELRLYYF 96 Query: 209 -ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 +N V +GR R+TP ++S + + +P W + + YL Sbjct: 97 PKNSNKVHVFPVGIGREGRETPQMNSFVKTKLKDPVWTPTPTTRAE-----------YLD 145 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS-RNNTYMHDT 326 + + GK N + S ++ + N +H T Sbjct: 146 KYKMVL-----------------------PRIVQAGKHNPLGSFALQLAYGKRNYLIHGT 182 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 F +R ++GC+R+ N D+ WL + Sbjct: 183 NTD--FGIGMR-ISAGCIRM-NPDDI-EWLYNN 210 >gi|307825945|ref|ZP_07656160.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307733064|gb|EFO03926.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 338 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 45/193 (23%) Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-----VGLRSTVIVGRVDRQTPILH 232 V L + L + +NI + + + +GR D +TP+ Sbjct: 86 VRLSNRRILP--DTPHEGITLNIAEYRMYYYPPTQKGVAPQVMSYAHGIGRQDWKTPLGK 143 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 + I + + +P W P SI ++ ++ Sbjct: 144 TSIVQKVKDPAWHPPESIRRE-----------------------------------HAAN 168 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNII 350 PG N + + + +H T ++ + T GCVR+ +I Sbjct: 169 GDPLPAVVQPGPHNPLGAYMLHLAVPGGYLIHGTDIDKIYGIGM-QITHGCVRMYPEDIE 227 Query: 351 DLDVWLLKDTPTW 363 L + TP + Sbjct: 228 ALYNSVPVGTPVY 240 >gi|153208754|ref|ZP_01946992.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212212071|ref|YP_002303007.1| hypothetical protein CbuG_0434 [Coxiella burnetii CbuG_Q212] gi|212219291|ref|YP_002306078.1| hypothetical protein CbuK_1807 [Coxiella burnetii CbuK_Q154] gi|120575786|gb|EAX32410.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212010481|gb|ACJ17862.1| hypothetical exported protein [Coxiella burnetii CbuG_Q212] gi|212013553|gb|ACJ20933.1| hypothetical exported protein [Coxiella burnetii CbuK_Q154] Length = 314 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGL-RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +++N+ A L GK V +GR + TP+ I + + NP WV+P Sbjct: 90 PVPKEGIVINLAAMRLYYFPKGKNYFYTYPVGIGRFNWSTPLGKLHIIQKIKNPVWVVPD 149 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI++ G N + Sbjct: 150 SILRYR-----------------------------------QENGDPVPKMMPSGPENPL 174 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H T +P R ++GC+ + +I L + DTP Sbjct: 175 GYYALRLSQP-TYLIHGTNDPSSVG---RRSSAGCIHLYPEDIKALFGMVSVDTP 225 >gi|220934928|ref|YP_002513827.1| hypothetical protein Tgr7_1758 [Thioalkalivibrio sp. HL-EbGR7] gi|219996238|gb|ACL72840.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7] Length = 424 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 44/202 (21%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLE-AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R L Q +++N+P L + + +GR+D TP+ R+ + Sbjct: 92 RRHILPRQ--HRSGIVINLPEMRLYDYTAGQDHIMTYAISIGRMDWSTPLGTLRVIQKTE 149 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W P SI Q + + Sbjct: 150 QPTWTPPASIRQA-----------------------------------YAARGESLPAVV 174 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLK 358 PG N + + + + +H T P +R T GC+R+ +I L + Sbjct: 175 PPGPDNPLGEFAMRLSNP-SYLIHGTNWPE--GIGMRA-THGCIRLAPSDIEHLFSRIPV 230 Query: 359 DTPTWSRYHIEEVVKTRKTTPV 380 TP + T + Sbjct: 231 GTPVHIVNEPVKAGWDGDTLYL 252 >gi|253989393|ref|YP_003040749.1| hypothetical protein PAU_01913 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780843|emb|CAQ84005.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 358 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +++N+ L GK + + +G++ R TP++ + +++++ +P W + Sbjct: 92 DTPRQGIVINLAELRLYYFPKGKNKVIVYPIGIGQLGRNTPVMTTSVSQLIKDPTWTPTK 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + + + G N M Sbjct: 152 NIRKH-----------------------------------YAEQGITLPAVVPAGPENPM 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + Y +H T F +R +SGC+R+R D+ L P +R Sbjct: 177 GLFALRLAAGRGEYLIHGTNAD--FGIGMR-VSSGCIRLR-PDDI-EALFNSVPRGTRVQ 231 Query: 368 I 368 I Sbjct: 232 I 232 >gi|293396322|ref|ZP_06640600.1| LysM domain/ErfK/YbiS/YcfS/YnhG domain protein [Serratia odorifera DSM 4582] gi|291421111|gb|EFE94362.1| LysM domain/ErfK/YbiS/YcfS/YnhG domain protein [Serratia odorifera DSM 4582] Length = 340 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L G+ + + +G+ TP+ + +++ + NP W Sbjct: 94 DTPREGIVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLKVTSVSQKIPNPTWTPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I ++ + + G N M Sbjct: 154 NIRKR-----------------------------------YAAQGVTLPGVVPAGPENPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDT 360 + + Y +H T F +R +SGC+R+R +I L + K T Sbjct: 179 GLFAMRLSMGHGEYLIHGTNA--NFGIGMR-VSSGCIRLRPNDIEALFNMVPKGT 230 >gi|114320738|ref|YP_742421.1| ErfK/YbiS/YcfS/YnhG family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227132|gb|ABI56931.1| ErfK/YbiS/YcfS/YnhG family protein [Alkalilimnicola ehrlichii MLHE-1] Length = 329 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 54/177 (30%), Gaps = 45/177 (25%) Query: 192 GLRYVLVNIPAASLEAVE-----NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 V+VN+ L + V VGR+D +TP+ + I +P W Sbjct: 100 PREGVVVNVAEMRLYYYRPVTAGERRRVETYPVSVGRMDWETPVGRTEITAKAEDPSWYP 159 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI +Y + + PG N Sbjct: 160 PESI------------REYARRE----------------------QGKELPRVVPPGPDN 185 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + +H T P +R TSGC+R+ +I +L L TP Sbjct: 186 PLGRHALRLGIP-GYLIHGTNRPW--GIGMR-VTSGCIRMYPEDIEELFPRLPVGTP 238 >gi|218249099|ref|YP_002374470.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 8801] gi|257062185|ref|YP_003140073.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 8802] gi|218169577|gb|ACK68314.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 8801] gi|256592351|gb|ACV03238.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 8802] Length = 194 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 54/169 (31%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 ++N+ + A +N KV V +G+ +TP + + ++ NP W P Sbjct: 72 VLNLKQRKVYAYQNDKVLASYPVAIGKKGWETPKGNFTVTSLIVNPKWKNP--------- 122 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 +V PG + + I F Sbjct: 123 --------------------WTGKVS------------------APGPNSPLGERWIGFA 144 Query: 317 --SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 ++ H TP + + GCVR+RN I L + K TP Sbjct: 145 TKGKDVIGFHGTPGEHVMGQ---AVSHGCVRMRNKDIKALFELVDKGTP 190 >gi|114567178|ref|YP_754332.1| ErfK/YbiS/YcfS/YnhG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338113|gb|ABI68961.1| ErfK/YbiS/YcfS/YnhG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 283 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + S + +++RL G F E+A+K FQ GL G+VD +T Sbjct: 12 KIRMSGPDIHLMQKRLKELGY--NPGVEDGIFGEQSEAALKAFQASRGLVVDGVVDPNTW 69 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + +R++ N + + +++ L G V VG Sbjct: 70 LLLEPSSSIRLQ----NKREGQAW-----EQPRISIDVVKRRLTYTS-GSFKKTYPVAVG 119 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + TP+ + I + NP ++ + Y + + GK V Sbjct: 120 KPQTPTPLGNWTIVQKTVNPGGPFGARWMRLSVPW-----GGYGI-HGTNRPSSIGKAVS 173 Query: 283 VEEVDWNSPEPPNFIFRQDPG-KINAMAS 310 V + + R G +N Sbjct: 174 HGCVRMYNADVIELYDRTPLGTPVNIFGK 202 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 39/150 (26%), Gaps = 18/150 (12%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P R+ W PR I D++ + K + +W Sbjct: 74 PSSSIRLQNKREGQAWEQPR--ISIDVVKRRLTYTSGSFKKTYPVAVGKPQTPTPLG-NW 130 Query: 289 NSPEPPNFIFRQDP-GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 Q + + Y +H T P + GCVR+ Sbjct: 131 T--------IVQKTVNPGGPFGARWMRLSVPWGGYGIHGTNRPSSIGK---AVSHGCVRM 179 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 N + L TP + +I T + Sbjct: 180 YNADVI--ELYDRTPLGTPVNIFGKANTGR 207 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G+ V+ ++ L G F E+AV FQ + L G+V Sbjct: 205 TGRVLSRGDQGSDVKEVQRMLRTLGYY--RVKPDGKFGPKTEAAVIAFQRDNQLIADGIV 262 Query: 158 DSSTLEAMNV 167 T A+ Sbjct: 263 GPYTHHALQK 272 >gi|212712077|ref|ZP_03320205.1| hypothetical protein PROVALCAL_03156 [Providencia alcalifaciens DSM 30120] gi|212685599|gb|EEB45127.1| hypothetical protein PROVALCAL_03156 [Providencia alcalifaciens DSM 30120] Length = 359 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 42/220 (19%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-E 209 + + + N D + ++ L+ ++L +++N+ L E Sbjct: 62 IASDYQIGLLAMLEANPGTDPYLPEVGKPLIIPAQMLLPSTPRTGIVINLAELRLYYYPE 121 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 N + + + +G++ R TP + + I++++ +P W +I + Sbjct: 122 NSRKVVVYPIGIGQLGRDTPEMVTSISQLIKDPTWTPTTNIRKH---------------- 165 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 + + G N M + Y +H T Sbjct: 166 -------------------YAQQGITLPAVVPAGPENPMGLYALRLSYGRGEYLIHGTNA 206 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 F +R +SGC+R+R D+ L + P +R + Sbjct: 207 N--FGIGMR-VSSGCIRLR-PDDI-KALFTNVPKGTRVQV 241 >gi|167041410|gb|ABZ06162.1| putative ErfK/YbiS/YcfS/YnhG [uncultured marine microorganism HF4000_006O13] Length = 313 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 40/157 (25%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + +N+ NG+ + V +GR+D P+ S+++ + NP W P S+ Q+ Sbjct: 104 MTINLAEYR-GFFANGEQLITFPVGIGRMDWTIPLGVSKVDLKLENPAWYPPASVRQE-- 160 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 E G N + + Sbjct: 161 ---------------------------------YQEEGIYLAPVIPAGPDNPLGKLAMRL 187 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 ++H T +P + GC+R+ D+ Sbjct: 188 DIPGGYFIHGTNKPDGVGM---QVSHGCIRLF-PEDI 220 >gi|258645663|ref|ZP_05733132.1| putative cell wall lytic activity [Dialister invisus DSM 15470] gi|260403030|gb|EEW96577.1| putative cell wall lytic activity [Dialister invisus DSM 15470] Length = 429 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 18/157 (11%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGIDSDI----- 67 L L M S+ + +H + + + +V + D + S+ Sbjct: 13 LWLCMVGSVSAEILHMGMRGAAVESLQNDLVEAGYLARTVDGDYGSTTVKAVSEFQKDHG 72 Query: 68 -PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 P+ K T+ + R G + + GN + L++RL +G L Sbjct: 73 LPVTGKAD-DSTQAKLKEDDGKGYRDGGGIVYAQ----GNRGDMIAELQDRLAAAGYL-- 125 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + + +AVK FQ H L SG VD TL Sbjct: 126 TGASDGIYGGDTAAAVKQFQKDHRLPVSGAVDEQTLS 162 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ ++ L+ +L +G LD + ESAV+ Q HGL +G VD +T + Sbjct: 195 GDRGSEIKTLQNKLRRAGYLDGEA--DGIYGNDTESAVRALQEEHGLSVTGNVDDATWK 251 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + LH+G +V+ L+ L+ +G L + + + AV FQ HGL + Sbjct: 19 GSVSAEILHMGMRGAAVESLQNDLVEAGYLAR--TVDGDYGSTTVKAVSEFQKDHGLPVT 76 Query: 155 GMVDSSTLEAMNVP 168 G D ST + Sbjct: 77 GKADDSTQAKLKED 90 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 9/89 (10%) Query: 89 LSRGGWPEL-------PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + W L L G+ V +L+ RL++ G G + A A Sbjct: 245 VDDATWKLLGGLSAPSAGGTLKAGDRGKRVVKLQNRLLLHGY--NPGGSDGIYGAATAEA 302 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V+ Q L+ +GM D++ E + Sbjct: 303 VRKLQAEEKLERTGMADTNVWERLENAPK 331 >gi|159028466|emb|CAO89913.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 170 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 54/172 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++++ + + ++ KV + V VG+ +TP + ++ NP W P Sbjct: 44 THLVLKLKERKVYVYQDSKVLAQFAVAVGKKGWETPTGKFEVRELVRNPVWKSP------ 97 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 +V PG + + I Sbjct: 98 -----------------------WTGKVS------------------APGPNSPLGERWI 116 Query: 314 EFYS--RNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 F+S +N+ H TP R + GCVR+RN + L + TP Sbjct: 117 GFWSDGKNSIGFHGTPAENSLG---RAASHGCVRMRNRDVKVLFDLVRMGTP 165 >gi|126658355|ref|ZP_01729504.1| hypothetical protein CY0110_27385 [Cyanothece sp. CCY0110] gi|126620287|gb|EAZ91007.1| hypothetical protein CY0110_27385 [Cyanothece sp. CCY0110] Length = 191 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 60/215 (27%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNL---MRIKKLLEQKMGLRYVLV--NIPAASL 205 L G ++ + + P +L V L E+ + V N+ + Sbjct: 19 LPIEG-INKQAIASEGTPPATPSTELPVTLPLEEAAIVTPEETIETLATRVVLNLKERKV 77 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 ++ +V V +G+ +TP + +++ +P W P Sbjct: 78 YVYQDDQVIANYPVAIGKPGWETPRGEFSVIQMVEDPQWKNP------------------ 119 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM-- 323 V G + + I F+ Y+ Sbjct: 120 -----------WNGRVS------------------AAGPNSPLGERWIGFWREGGKYIGF 150 Query: 324 HDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 H TP + + GCVR+RN + L + Sbjct: 151 HGTPGEHVMGQ---AVSHGCVRMRNQDVKALYELV 182 >gi|120553059|ref|YP_957410.1| ErfK/YbiS/YcfS/YnhG family protein [Marinobacter aquaeolei VT8] gi|120322908|gb|ABM17223.1| ErfK/YbiS/YcfS/YnhG family protein [Marinobacter aquaeolei VT8] Length = 349 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 45/211 (21%) Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 + L R+ L + +++N+ L V VG + +P+ ++++ Sbjct: 100 ITLPRMYVLP--DVEREGIVINLAEYRLYYFTPDGGVQVYPVGVGTEENPSPLTNAKVTM 157 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 + +P W P SI + Sbjct: 158 PLESPAWYPPASIRAE-----------------------------------YEASGDYLP 182 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 PG N + + + + +H T + F + + GC R+ N D+ ++ Sbjct: 183 KMIPPGPGNPLGTHALMLSEK-GYLIHGTNKQ--FGVGM-PVSHGCFRMYN-EDISRFVY 237 Query: 358 KDTPTWSRYHIEEVVK---TRKTTPVKLATE 385 + I E VK + +++ Sbjct: 238 QVEKGTPVQVIREPVKIGMSGGEVWLEVHRP 268 >gi|119946260|ref|YP_943940.1| peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG protein [Psychromonas ingrahamii 37] gi|119864864|gb|ABM04341.1| Peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG protein [Psychromonas ingrahamii 37] Length = 322 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 52/218 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + +++N+P L GK + + +GR+ R TP + + + + +P W Sbjct: 110 DVSHKGIVINLPELRLYYFPKGKQEVHIFPIGIGRIGRSTPTMETTVRMKIKHPSWTPTT 169 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + GK N + Sbjct: 170 QSRAEHF----------------------------------QATGKHLPSVVKAGKDNPL 195 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 ++ N Y +H T + F +R ++GC+R+ N D+ WL + T Sbjct: 196 GDYALQLAYGNYEYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDI-SWLFQQVSTNESVR 250 Query: 368 IEEV---VKTRKTTPVKLATEVPV--------HFVYIS 394 I + + L P+ +Y + Sbjct: 251 IINQPIKIASEPNGQKMLEVHSPISRSDDDTEFSLYWT 288 >gi|37526507|ref|NP_929851.1| hypothetical protein plu2616 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785938|emb|CAE14990.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 360 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +++N+ L GK + + +G++ R TP++ + +++++ +P W + Sbjct: 92 DTPRQGIVINLAELRLYYFPKGKNNVIVYPIGIGQLGRNTPVMTTSVSQLIKDPTWTPTK 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + + + G N M Sbjct: 152 NIRKH-----------------------------------YAEQGVILPAVVPAGPENPM 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + + Y +H T F +R +SGC+R+R D+ L P +R Sbjct: 177 GAFALRLAAGRGEYLIHGTNAD--FGIGMR-VSSGCIRLR-PDDI-ETLFNAVPRGTRVQ 231 Query: 368 I 368 I Sbjct: 232 I 232 >gi|83643225|ref|YP_431660.1| hypothetical protein HCH_00323 [Hahella chejuensis KCTC 2396] gi|83631268|gb|ABC27235.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 315 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 41/169 (24%) Query: 196 VLVNIPAASLEAVENGKVGL-RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +L+N+ L + K L + +G VD TPI+ ++I M NP W P SI Q+ Sbjct: 99 ILINLAEYRLYYFQPDKKRLYTVPIGIGTVDFPTPIMDTKIVTRMKNPTWYPPESIRQRQ 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + G N + + + Sbjct: 159 L----------------------------------DEYGEQLPRAVPAGPDNPLGAYAFK 184 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 ++ +H T + +R + GC+R+ N + + +TP Sbjct: 185 L-DADSYLIHGTNK--GVGIGMR-VSHGCIRLYNWDIKQMMSMVPDNTP 229 >gi|225849285|ref|YP_002729449.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643963|gb|ACN99013.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 460 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 46/196 (23%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIP-AASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + + V RI + G Y+ +N +E+ + + +G + Q+P+ Sbjct: 256 QIIIVPFRRILPIKNFSYGTIYININEKRLYYPVLIEDKSYIITFPIGIGADEAQSPVGD 315 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 +I + NP W P SI ++ Sbjct: 316 FKITQKRKNPAWYPPESIRKEQ-------------------------------------- 337 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNII 350 P+ PG N + + + + + MH T + + GC+R+ ++ Sbjct: 338 -PDLPPVFPPGPDNPLGTRAMRLGNT-SFLMHGTNKEYGIGMK---VSHGCIRMYNEDVE 392 Query: 351 DLDVWLLKDTPTWSRY 366 L + TP SR Sbjct: 393 KLFEVVDVGTPVVSRD 408 >gi|116626900|ref|YP_829056.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Solibacter usitatus Ellin6076] gi|116230062|gb|ABJ88771.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Solibacter usitatus Ellin6076] Length = 182 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 53/188 (28%), Gaps = 55/188 (29%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + R ++V+IP L +E+ +V VG +P I + +P W Sbjct: 30 QNTRPARRIVVSIPDRKLAVMEDDRVLRVFETAVGAPKSPSPTGTYTIINSIADPTWYTK 89 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 I+ PGK N Sbjct: 90 GKIV-------------------------------------------------PPGKCNP 100 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSR 365 + + + + +H T P R + GC+R+RN + +L + R Sbjct: 101 LGTRWLGLSVK-GYGIHGTNVPSSIG---RNASHGCIRMRNRDVEELFKMVAVGDQVELR 156 Query: 366 YHIEEVVK 373 + V Sbjct: 157 GERDAEVA 164 >gi|197285269|ref|YP_002151141.1| peptidoglycan-binding protein [Proteus mirabilis HI4320] gi|194682756|emb|CAR42976.1| putative peptidoglycan-binding protein [Proteus mirabilis HI4320] Length = 305 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 56/225 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + G + +G++ R+TP + + +++++ +P W +I + Sbjct: 98 IVINLAELRLYYYPKEGGTVDVYPIGIGQLGRETPEMVTSVSQLIKDPTWTPTANIRKN- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N M + + Sbjct: 157 ----------------------------------YAAKGITLPAVVPAGPDNPMGAYALR 182 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKD---TPTWSRYHI 368 Y +H T F +R +SGC+R+R +I L + K Sbjct: 183 LAHSRGEYLIHGTNAD--FGIGLR-VSSGCIRLRPDDIETLFNVVPKGSRVQVINKPIKF 239 Query: 369 EEVVKTRKTTPV--KL-------ATEVPVHFV-YISAWSPKDSII 403 E ++ V L +P+ F +AW + + Sbjct: 240 TETADGKQFIEVHQPLSQNEDDDPQTMPLTFTKQFTAWY-ESGKV 283 >gi|325981388|ref|YP_004293790.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] gi|325530907|gb|ADZ25628.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] Length = 331 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 58/209 (27%) Query: 173 IRQLQVNLMRIKKLLEQ----KMGLRYVLV---------NIPAASLEAV---ENGK--VG 214 I L N + L E + RY++ N+P + + G+ Sbjct: 64 IEILLANPNVDRWLPEDGVTVTLPSRYIIPQAERKGLVLNLPEMRIYYFPEPKKGEKPTV 123 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 V +GR+D TP+ SRI +P W+ P+S+ + Sbjct: 124 TTHPVGIGRMDWVTPLGISRIIEKKKDPTWIPPKSLQMDRI------------------- 164 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFN 333 + P + PG N + + + +Y +H T +P F Sbjct: 165 ---------------ANGEPPYPSIVPPGPTNPLGRHAMRLSIGSGSYLIHGTIKP--FG 207 Query: 334 NVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +R ++GCVR+ +I L + T Sbjct: 208 VGMR-VSAGCVRMYPEDIEALFDKVPVGT 235 >gi|269139201|ref|YP_003295902.1| hypothetical protein ETAE_1854 [Edwardsiella tarda EIB202] gi|267984862|gb|ACY84691.1| hypothetical protein ETAE_1854 [Edwardsiella tarda EIB202] Length = 374 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 42/184 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ R TP + +R+++ + +P W Sbjct: 94 DTPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRNTPEMVTRVSQHIKDPTWTPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + + + G N M Sbjct: 154 NIRRH-----------------------------------YQAQGISLPAVMPAGPDNPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + ++ Y +H T F +R +SGC+R+R D+ L + P +R Sbjct: 179 GRFALRLAAQGGVYLIHGTNAD--FGIGMR-VSSGCIRLR-PGDI-EALFRSVPGGTRVQ 233 Query: 368 IEEV 371 I Sbjct: 234 IVNQ 237 >gi|227355699|ref|ZP_03840092.1| ErfK/YbiS/YcfS/YnhG family protein [Proteus mirabilis ATCC 29906] gi|227164018|gb|EEI48915.1| ErfK/YbiS/YcfS/YnhG family protein [Proteus mirabilis ATCC 29906] Length = 305 Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 56/225 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + G + +G++ R+TP + + +++++ +P W +I + Sbjct: 98 IVINLAELRLYYYPKEGGTVDVYPIGIGQLGRETPEMVTSVSQLIKDPTWTPTANIRKN- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N M + + Sbjct: 157 ----------------------------------YAAKGITLPAVVPAGPDNPMGAYALR 182 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKD---TPTWSRYHI 368 Y +H T F +R +SGC+R+R +I L + K Sbjct: 183 LAHSRGEYLIHGTNAD--FGIGLR-VSSGCIRLRPDDIETLFNVVPKGSRVQVINKPIKF 239 Query: 369 EEVVKTRKTTPV--KL-------ATEVPVHFV-YISAWSPKDSII 403 E ++ V L +P+ F +AW + + Sbjct: 240 TETADGKQFIEVHQPLSQNEDDDPQTMPLTFTKQFTAWY-ESGKV 283 >gi|220910238|ref|YP_002485549.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7425] gi|219866849|gb|ACL47188.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7425] Length = 217 Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 52/184 (28%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 Q + +++++ + + V +GR +TP+ ++ +++ NP W P Sbjct: 84 PQVVAPLRLVISLSRRRVTVFQGSTALKSYPVAIGRPGWETPVGKFQVKQLIRNPTWKHP 143 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + N Sbjct: 144 ----------------------------------------------FKGDIIKGGHPDNP 157 Query: 308 MASTKIEFY--SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 + I F+ +N MH TP P R + GCVR+ N D+ K Sbjct: 158 LGKFWIGFWTDGKNWVGMHGTPNPESVG---RAASHGCVRMYN-KDIAELFAKVQLGTPV 213 Query: 366 YHIE 369 ++ Sbjct: 214 TVVK 217 >gi|304559115|gb|ADM41779.1| hypothetical protein ETAF_1671 [Edwardsiella tarda FL6-60] Length = 346 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 42/184 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++N+ L G+ + + +G++ R TP + +R+++ + +P W Sbjct: 66 DTPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRNTPEMVTRVSQHIKDPTWTPTA 125 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + + + G N M Sbjct: 126 NIRRH-----------------------------------YQAQGISLPAVMPAGPDNPM 150 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + ++ Y +H T F +R +SGC+R+R D+ L + P +R Sbjct: 151 GRFALRLAAQGGVYLIHGTNAD--FGIGMR-VSSGCIRLR-PGDI-EALFRSVPGGTRVQ 205 Query: 368 IEEV 371 I Sbjct: 206 IVNQ 209 >gi|254430643|ref|ZP_05044346.1| protein ErfK/srfK [Cyanobium sp. PCC 7001] gi|197625096|gb|EDY37655.1| protein ErfK/srfK [Cyanobium sp. PCC 7001] Length = 172 Score = 83.9 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 70/194 (36%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G R V+++ + +E G+ R V VGR +TP+ + ++ +P W P Sbjct: 24 PAVPGSREVVLDRRQRHVRVLEGGRELRRFPVAVGRPGWETPVGRFAVIELVRDPVWEHP 83 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + G++V PG N Sbjct: 84 AT----------------------------GQKV-------------------PPGPSNP 96 Query: 308 MASTKIEFY---------SRNNT---------YMHDTPEPILFNNVVRFETSGCVRV--R 347 + S I F+ + N H TP + GCVR+ Sbjct: 97 LGSRWIGFHRDCRGRRGFNGRNYLVVEGCVSAGFHGTPNRESVGQ---AVSHGCVRLFDE 153 Query: 348 NIIDLDVWLLKDTP 361 + +L + TP Sbjct: 154 HARELFELVRIGTP 167 >gi|75907183|ref|YP_321479.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75700908|gb|ABA20584.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 575 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 63/209 (30%), Gaps = 28/209 (13%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G+ S V L+E+L G ++ FD ++AV FQ + L G+V Sbjct: 136 SKSSLKRGDISDRVMSLQEKLQADGYY--QGAITGNFDTATQAAVIQFQQANRLVADGIV 193 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T + L L EQ + + P Sbjct: 194 GPKTSSVLASSTRKLAASLPQKTTLEPFLTEQPQKPQNQVKIAPQ--------------- 238 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 P ++ I + P+S++ Q+ Y ++ I + D Sbjct: 239 -------SAAPPSPSQKMRLIKTISGKISPKSVVYSGNGLFFAQNMMY--NHTITVYDRN 289 Query: 278 GK--EVFVEEVDWNSPEPPNFIFRQDPGK 304 + +V +EVD + F + Sbjct: 290 YELVKVIPDEVDLSKYGHSRFKGKYRGAP 318 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L G+ + V L+++L SG + F + E+AVK FQ +GL Sbjct: 48 WCLPAAAALKKGHRNPQVASLQQKLRASGYFSQAAT--GYFGSVTEAAVKRFQEANGLKA 105 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQV 178 G+V ++TL A+ + + + Sbjct: 106 DGIVGAATLAALESTMGVSESSITT 130 >gi|261343983|ref|ZP_05971628.1| ErfK/YbiS/YcfS/YnhG family protein [Providencia rustigianii DSM 4541] gi|282568374|gb|EFB73909.1| ErfK/YbiS/YcfS/YnhG family protein [Providencia rustigianii DSM 4541] Length = 349 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 42/179 (23%) Query: 192 GLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V++N+ L N K + + +G++ R TP + + I++++ +P W +I Sbjct: 94 PRTGVVINLAELRLYYFPANSKKVIVYPIGIGQLGRDTPEMVTSISQLIKDPTWTPTTNI 153 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + + G N M Sbjct: 154 RKH-----------------------------------YAKQGITLPAVVPAGPENPMGL 178 Query: 311 TKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + Y +H T F +R +SGC+R+R D+ L K P +R + Sbjct: 179 YALRLSYGKGEYLIHGTNAD--FGIGMR-VSSGCIRLR-PHDI-EALFKSVPKGTRVQV 232 >gi|291532676|emb|CBL05789.1| Uncharacterized protein conserved in bacteria [Megamonas hypermegale ART12/1] Length = 395 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 64/224 (28%), Gaps = 81/224 (36%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++L+NIPA SL +N K V VG+++ +TP+ ++ + NP W Sbjct: 52 RWILINIPARSLRLYDNDKCIEMYPVGVGKIETKTPVGFYKVVEKIVNPTWT-------- 103 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 +P + G+ N + I Sbjct: 104 --------------------------------------DPADVSVVIPSGEDNPLGYRWI 125 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 H T P + + ++GCVR+ + + V Sbjct: 126 GIGGNYGI--HGTNRPDSVGH---YVSNGCVRMVEA--------------DVEKVFDKVD 166 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPK--DSIIQFRDDIY--GLD 413 V +Y K D + + IY G D Sbjct: 167 VGTE----------VQIIYNRLVIDKTFDGRVAYY--IYPDGYD 198 >gi|154705804|ref|YP_001423831.1| hypothetical protein CBUD_0411 [Coxiella burnetii Dugway 5J108-111] gi|154355090|gb|ABS76552.1| hypothetical exported protein [Coxiella burnetii Dugway 5J108-111] Length = 314 Score = 83.9 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGL-RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +++N+ A L GK V +GR + TP+ I + + NP WV+P Sbjct: 90 PVPKEGIVINLAAMRLYYFPKGKNYFYTYPVGIGRFNWSTPLGKLHIIQKIKNPVWVVPD 149 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 S+++ G N + Sbjct: 150 SVLRYR-----------------------------------QENGDPVPKMMPSGPENPL 174 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H T +P R ++GC+ + +I L + DTP Sbjct: 175 GYYALRLSQP-TYLIHGTNDPSSVG---RRSSAGCIHLYPEDIKALFGMVSVDTP 225 >gi|300863730|ref|ZP_07108662.1| ErfK/YbiS/YcfS/YnhG-like protein [Oscillatoria sp. PCC 6506] gi|300338298|emb|CBN53808.1| ErfK/YbiS/YcfS/YnhG-like protein [Oscillatoria sp. PCC 6506] Length = 213 Score = 83.5 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 54/160 (33%) Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 ++ V VG+ +TP + ++ +++ P W P + Sbjct: 99 YVYRKNELQTSFPVAVGKDGWETPTGNFKVMQMIREPSWEHPWT---------------- 142 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTYM 323 G+ V PG N + S I F+ +N Sbjct: 143 ------------GEVV-------------------PPGPDNPLGSRWIGFWTDGKNVIGF 171 Query: 324 HDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 H TP P R + GCVR+ ++ L + TP Sbjct: 172 HGTPNPESIG---RPASHGCVRMYDKDAQALFEKVEVGTP 208 >gi|258516740|ref|YP_003192962.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780445|gb|ACV64339.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum acetoxidans DSM 771] Length = 309 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 57/246 (23%), Gaps = 77/246 (31%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 VQ L+E+L+ G + F AV+ Q +HG+ G+V+ + Sbjct: 44 PNMKGKDVQELQEQLMDLGLY--EDKIDGVFGPSTAQAVQALQEKHGVKTDGIVNVTIWA 101 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + V + Sbjct: 102 MLLS------------------------------------------------EHGATVTQ 113 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + P I N + + Y + GK Sbjct: 114 KESPPPQGKPSIVVDTVNRTLTV------------FIDNEPY--RQYYVAV---GKPETP 156 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNT-YMHDTPEPILFNNVVRFETSG 342 + + R+ + I +H T +P +E+ G Sbjct: 157 TPIGSWTV------VRKAMNWGTGFGTRWIGLNVPWGIFGIHGTNKPYSIG---GYESHG 207 Query: 343 CVRVRN 348 C+R+ N Sbjct: 208 CIRMHN 213 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG V ++ L G ++ F+ ++ A++ + L VD Sbjct: 246 LSLGERGSDVAEVQRILKKRGYYK--GDINGLFNKEIKEAIEKLRKDKRLLHDDRVDLEI 303 Query: 162 LEAMN 166 +A+ Sbjct: 304 YQALG 308 >gi|121996923|ref|YP_001001710.1| ErfK/YbiS/YcfS/YnhG family protein [Halorhodospira halophila SL1] gi|121588328|gb|ABM60908.1| ErfK/YbiS/YcfS/YnhG family protein [Halorhodospira halophila SL1] Length = 355 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 67/238 (28%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD--LRIRQLQVNLMRIK--------KLLE 188 + A+ F++ G+D +V ++ V +I+ L Sbjct: 62 DRALHRFELAEGVD---VVGEEQTAEAGADDTLLDVAKRYAVGYEQIRMANPGVDTWLPG 118 Query: 189 Q-------------KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSR 234 + V++N+ L E+ V V +GR+D TP+ + Sbjct: 119 EGAEIRIPSRYILPDAPREGVVINLAEMRLYHYPEDENVVEVFPVSIGRMDWSTPLGRTE 178 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + + +P W P SI ++ Sbjct: 179 VTGKIQDPAWYPPESIRKQ-----------------------------------AEQRGE 203 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 PG N + I +H T P +R T GC+R+ D+ Sbjct: 204 TMPREVPPGPDNPLGRHAILLDIS-GYLLHGTNRPW--GIGMRA-THGCIRLH-PRDI 256 >gi|119477591|ref|ZP_01617741.1| hypothetical protein GP2143_09020 [marine gamma proteobacterium HTCC2143] gi|119449094|gb|EAW30334.1| hypothetical protein GP2143_09020 [marine gamma proteobacterium HTCC2143] Length = 318 Score = 83.5 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 62/262 (23%) Query: 135 DAYVESAVKLFQMRHGL--DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 D + +Q+ + + + VD PV L I + N R Sbjct: 48 DDTLVDLAARYQLGYNVIRSANPAVDPWLPGEG-TPVVLPINVILPNAER---------- 96 Query: 193 LRYVLVNIPAASLEAVENGKVG-----LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +++N+P L A + + VGR D TPI +R+ NP W P Sbjct: 97 -EGIIINVPEMRLYAYASNGPNPSSRVTVHPISVGRGDWTTPITKTRVTGRAENPDWYPP 155 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 +SI D ++ + G N Sbjct: 156 KSIR-----------------------------------DEHAARGDTLPTKVSAGPDNP 180 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + + ++H T +P F + T GC+R+ D++ + + Sbjct: 181 LGRFLLMLDIP-SYFIHGTNKP--FGIGM-QVTHGCIRMY-PDDIEQLVKQTRNNTPVTI 235 Query: 368 IEEVVKTR---KTTPVKLATEV 386 + + KT + V++ + Sbjct: 236 VNQTFKTGWFEQQLYVEVHQPL 257 >gi|300722818|ref|YP_003712110.1| hypothetical protein XNC1_1866 [Xenorhabdus nematophila ATCC 19061] gi|297629327|emb|CBJ89926.1| putative enzyme with LysM domain [Xenorhabdus nematophila ATCC 19061] Length = 318 Score = 83.5 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 43/202 (21%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +++N+ L G + + +G++ R TP + + +++++ +P W P Sbjct: 97 DTPRQGIIINLAELRLYYYPKGANHVIVYPIGIGQLGRNTPTMTTSVSQLIGSPTWT-PT 155 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + I+KD + PG N M Sbjct: 156 ANIRKD----------------------------------YASRGIILPAVIPPGPDNPM 181 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWL-LKDTPTWS 364 + + Y +H T F +R +SGC+R+R +I DL + LK Sbjct: 182 GDFALRLAAGRGEYLIHGTNAN--FGIGMR-VSSGCIRLRPDDIRDLFSTVPLKTRVQVI 238 Query: 365 RYHIEEVVKTRKTTPVKLATEV 386 I+ V+ V++ + Sbjct: 239 NEPIKYSVEPDGKRYVEVHQPL 260 >gi|251789311|ref|YP_003004032.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] gi|247537932|gb|ACT06553.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] Length = 333 Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 55/181 (30%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L GK + + +G++ R TP++ + + NP W+ Sbjct: 94 DTPREGIVVNLAELRLYYFPKGKNTVIVYPIGIGQLGRNTPVMVTHVIERRPNPTWIPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + + G N M Sbjct: 154 NTRRH-----------------------------------YKEQGITLPAVVPGGPDNPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + Y +H T F +R +SGC+R+R D+ L D P +R Sbjct: 179 GLFALRLEKSGGVYSIHGTNAD--FGIGMR-VSSGCIRLR-PEDI-EALFNDVPVGTRVQ 233 Query: 368 I 368 I Sbjct: 234 I 234 >gi|218678683|ref|ZP_03526580.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium etli CIAT 894] Length = 209 Score = 83.2 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 54/207 (26%), Gaps = 33/207 (15%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 E + + + NP + + + Q Sbjct: 12 YTSVAEKLSERFHMGIDLVNALNPASQFSPGDTVWVVNPGVARQGKVKRIEADRKAGQVL 71 Query: 264 QYLKDNNIHMIDEK--GKEVFVEEVDWNSPEP----------PNFIFRQ---------DP 302 Y D + + G + + + P F+Q Sbjct: 72 AYAGDGALLAVYPATIGSQDNPAPSGKHKVKGVAKMPVYRYDPKLNFKQGKNDRVLTIPK 131 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 G + + I+ +H TPEP L + V + GCVR+ N +L + Sbjct: 132 GPNGPVGTVWIDLTEP-TYGIHGTPEPKLIDKVG---SHGCVRLTNWDAEELAGMV---K 184 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVP 387 P + + ++L +P Sbjct: 185 PGVLVDFVNRSAAAPE---IRLRLVLP 208 >gi|332711897|ref|ZP_08431827.1| hypothetical protein LYNGBM3L_69260 [Lyngbya majuscula 3L] gi|332349225|gb|EGJ28835.1| hypothetical protein LYNGBM3L_69260 [Lyngbya majuscula 3L] Length = 209 Score = 83.2 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 54/180 (30%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + + + +++ + + + +V + +G+ +TP + + + + +P W Sbjct: 75 IPAEATQITRLVIKLSERRVYVYQAAQVLNSYPIAIGKAGWETPTGNFEVIQKLQDPAWE 134 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P W PG Sbjct: 135 HP----------------------------------------WTGE-------VIPPGPN 147 Query: 306 NAMASTKIEFY--SRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 N + I F+ +N H T L + GC+R+ +++ DL + TP Sbjct: 148 NPLGDRWIGFWTNGKNYIGFHGTTAEELVGQ---AVSHGCIRMLNKDVRDLFEKVAIGTP 204 >gi|296133608|ref|YP_003640855.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola sp. JR] gi|296032186|gb|ADG82954.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola potens JR] Length = 318 Score = 83.2 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 74/256 (28%), Gaps = 76/256 (29%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S V ++ L G L + +AVK FQ + L +G ++ +TL + Sbjct: 55 SGSEVMDFQQALQYLGFY--RGKLDGVYGLQTYNAVKKFQRSNKLPVNGSINVATLRVLK 112 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 DL + K + G + V+I +L ++ KV V VG+ Sbjct: 113 KYFDLPLAT--------KTRTKGPKGEVRLEVHIKTRTLIVYDDDKVFKTYRVAVGKNKT 164 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 TP+ RI R N W G V Sbjct: 165 PTPVGEWRIVRKAKN--WG-----------------------------TGFGTRWLGLSV 193 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 W I ++ P + + GC+R+ Sbjct: 194 PW--------------------GLFGIHGTNK----------PWSIGSK---ASHGCIRM 220 Query: 347 --RNIIDLDVWLLKDT 360 R++ +L W+ T Sbjct: 221 FNRDVEELYEWVKLGT 236 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V +++++L G L + + +AVK FQ H +G VD Sbjct: 254 VLRRGYKGSDVYQVQQKLRELGYLKSTP--DGIYGPATIAAVKKFQKDHDFPVTGEVDID 311 Query: 161 TLEAMN 166 A+ Sbjct: 312 IYPAIG 317 >gi|145298314|ref|YP_001141155.1| hypothetical protein ASA_1301 [Aeromonas salmonicida subsp. salmonicida A449] gi|142851086|gb|ABO89407.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 305 Score = 83.2 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 47/214 (21%) Query: 157 VDSST------LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + T L N VD + + L ++L + +++N+P L Sbjct: 53 IGKHTQIGFLALLEANPGVDPYLPKPGTRLTLPTQMLLPDVPREGIVINLPELRLYYFPK 112 Query: 211 GK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 GK + + +G + R+TP + + + NP W +P +++K Sbjct: 113 GKNEVIVLPIGIGDIGRETPEMITTVIAKNPNPTW-VPGPMVRK---------------- 155 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS-RNNTYMHDTPE 328 W + + PG N + + + + +H T + Sbjct: 156 -----------------SWLEQKGISLPAVVPPGPDNPLGKFAMRLGYGKRDYLIHGTNK 198 Query: 329 PILFNNVVRFETSGCVRVR--NIIDLDVWLLKDT 360 F +R ++GC+R+R +I L + T Sbjct: 199 E--FGVGLR-VSAGCIRLRPDDIEALFKLVPVGT 229 >gi|225851535|ref|YP_002731769.1| ErfK/YbiS/YcfS/YnhG family protein [Persephonella marina EX-H1] gi|225644873|gb|ACO03059.1| ErfK/YbiS/YcfS/YnhG family protein [Persephonella marina EX-H1] Length = 427 Score = 83.2 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 48/185 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 R + L E++ + +N+ L +++ + V +G + ++PI I+ Sbjct: 224 RKRLLPEKEFNFGEIYLNLSEKRLYYPVIIDDDPYVISIPVGIGTDENRSPIGDFFISEK 283 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 NP W +P +I ++D P+ Sbjct: 284 RKNPAWYVPDNIKEED---------------------------------------PSLPD 304 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 PG N + + + + +H T + F ++ + GC+R+ ++ L + Sbjct: 305 IVPPGPNNPLGTRAMRLSNT-TYLLHGTSKR--FGIGMK-VSHGCIRMYNEDVEALFDLV 360 Query: 357 LKDTP 361 T Sbjct: 361 ETGTK 365 >gi|157370425|ref|YP_001478414.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia proteamaculans 568] gi|157322189|gb|ABV41286.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia proteamaculans 568] Length = 337 Score = 83.2 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L G+ + + +G+ TP+ + +++ + NP W Sbjct: 94 DTKREGIVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I ++ YL+ G N M Sbjct: 154 NIRKR-----------YLEK------------------------GVKLPGVVPAGPENPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDT 360 + + Y +H T F +R +SGC+R+R +I L + + T Sbjct: 179 GLFAMRLAMGHGEYLIHGTNA--NFGIGMR-VSSGCIRLRPTDIEALFNMVPRGT 230 >gi|290475508|ref|YP_003468396.1| LysM domain-containing protein [Xenorhabdus bovienii SS-2004] gi|289174829|emb|CBJ81630.1| putative enzyme with LysM domain [Xenorhabdus bovienii SS-2004] Length = 356 Score = 83.2 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 47/198 (23%) Query: 196 VLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L GK + + +G+++R TP + + +++++ NP W P + I+KD Sbjct: 103 IIINLAEFRLYYFPKGKNYVVVYPIGIGQLERDTPTMTTSVSQLIKNPTWT-PTTNIRKD 161 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + G N M + Sbjct: 162 ----------------------------------YASRGIILPTVVPAGADNPMGDFALR 187 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T F +R +SGC+R+R D++ I E +K Sbjct: 188 LAAGRGEYLIHGTNAN--FGIGMR-VSSGCIRLR-PDDIENLFYSVPRGTRVQVINEPIK 243 Query: 374 -----TRKTTPVKLATEV 386 T K V++ + Sbjct: 244 YTVEPTGK-RYVEIHQPL 260 >gi|271500201|ref|YP_003333226.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] gi|270343756|gb|ACZ76521.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] Length = 334 Score = 83.2 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L GK + + +G++ R TP++ + + NP W+ Sbjct: 94 DTPREGIVVNLAELRLYYFPKGKNTVIVYPIGIGQLGRNTPVMVTHVIERRPNPTWIPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + + + G N M Sbjct: 154 NTRRH-----------------------------------YKEQGIDLPAMVPGGPDNPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + Y +H T F +R +SGC+R+R D+ L D P +R Sbjct: 179 GLFALRLEKSGGVYSIHGTNAD--FGIGMR-VSSGCIRLR-PEDI-EALFNDVPVGTRVQ 233 Query: 368 I 368 I Sbjct: 234 I 234 >gi|218441711|ref|YP_002380040.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7424] gi|218174439|gb|ACK73172.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7424] Length = 217 Score = 82.8 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 40/151 (26%), Gaps = 52/151 (34%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + + + V VG+ +TP + +++ NP W P Sbjct: 99 ERRVYVYQGDQEIGNYPVAVGKKGWETPTGDFAVMQMIVNPSWQNPW------------- 145 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRN 319 G+ V G N + I F+ +N Sbjct: 146 ---------------NGRIV-------------------PAGPKNPLGERWIGFWTDGKN 171 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 H T L + GCVR+RN Sbjct: 172 FIGFHGTAAEHLIGQ---AVSHGCVRMRNSD 199 >gi|113475771|ref|YP_721832.1| ErfK/YbiS/YcfS/YnhG [Trichodesmium erythraeum IMS101] gi|110166819|gb|ABG51359.1| ErfK/YbiS/YcfS/YnhG [Trichodesmium erythraeum IMS101] Length = 216 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 55/215 (25%), Gaps = 89/215 (41%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 ++ A+K FQ G+ + +R + R Sbjct: 69 PKLDQAIKDFQKYLGIK----------------AEELVRVVLRIGER------------- 99 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + E K V VG+ +TP + ++ +++ NP W P Sbjct: 100 --------RVYVYEGEKEVASYPVAVGKPGWETPKGNFKVIQMVENPKWQNP-------- 143 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 W G A+ I F Sbjct: 144 --------------------------------WTGE-------VMPAGPNTALGLRWIGF 164 Query: 316 Y--SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +++ H TP + + GCVR+ N Sbjct: 165 WTDGKDSIGFHGTPTVGSIGS---AASHGCVRMYN 196 >gi|332711580|ref|ZP_08431511.1| hypothetical protein LYNGBM3L_66650 [Lyngbya majuscula 3L] gi|332349558|gb|EGJ29167.1| hypothetical protein LYNGBM3L_66650 [Lyngbya majuscula 3L] Length = 241 Score = 82.8 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 54/172 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 V+V++ ++ ++ V +G+ TP +I R NP W P I Sbjct: 115 YQVVVDLSDTTVYLYWGEQLLQSHPVAIGKPGWDTPTGSFKIIRKQPNPIWKEP---ITG 171 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 +++ PG N + I Sbjct: 172 ELIP--------------------------------------------PGPDNPLGERWI 187 Query: 314 EFYSR--NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 F+S + +H T E L + GC+R+ ++I L + TP Sbjct: 188 GFWSDGHHQIGLHGTDEEELIGK---AVSHGCLRMLNQDIKQLYEQVSLGTP 236 >gi|325983405|ref|YP_004295807.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] gi|325532924|gb|ADZ27645.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] Length = 392 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 52/169 (30%), Gaps = 45/169 (26%) Query: 190 KMGLRYVLVNIPAASLEAVENGKV-----GLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + +++N+ A L K + V +GRV+ +TP +RI NP W Sbjct: 123 DAPRQGIVINLAAMRLFYFPQTKPGEPQRVITHPVGIGRVEWKTPEGMTRITAKNKNPSW 182 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + SI ++ ++ PG Sbjct: 183 IPTPSIRKE-----------------------------------HAKNGNPLPAIVPPGP 207 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 N M + + + +H T +P + GCVR+ D+ Sbjct: 208 DNPMGAHVLRLAWP-SYAIHGTDKPPSIG---LRGSHGCVRMY-PEDIA 251 >gi|311696715|gb|ADP99588.1| ErfK/YbiS/YcfS/YnhG family protein [marine bacterium HP15] Length = 348 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 81/279 (29%), Gaps = 57/279 (20%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P P + S V + GDL G+ +A+ + L + Sbjct: 32 PESPEEP-DRSPRVPTF----PVQGDLAGELGVFETRYEDTFAAI-----GNRLAMGYL- 80 Query: 158 DSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 ++A V L + L R L + + +++N+ L + V Sbjct: 81 --ELVKANPGVDPWLPGDGTTITLPRQYVLPDARREG--IVINLAEYRLYYFTDEGVQ-V 135 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 V VG + +P+ + + + +P W P SI + Sbjct: 136 YPVGVGTAENPSPLTDAEVTMPLESPAWYPPASIRAE----------------------- 172 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 PG N + + + + +H T + F + Sbjct: 173 ------------YEASGDYLPRMIPPGPGNPLGTHALLLSEK-GYLIHGTNKK--FGVGM 217 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + GC R+ N D+ ++ + + + VK Sbjct: 218 -PVSHGCFRMYN-EDISRFVYQVEKGTPVQVVHDAVKIG 254 >gi|307131455|ref|YP_003883471.1| hypothetical protein Dda3937_03663 [Dickeya dadantii 3937] gi|306528984|gb|ADM98914.1| hypothetical protein Dda3937_03663 [Dickeya dadantii 3937] Length = 332 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 55/181 (30%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L GK + + +G++ R TP++ + + NP W+ Sbjct: 94 DTPREGIVVNLAELRLYYFPKGKNTVIVYPIGIGQLGRNTPVMVTHVIERRPNPTWIPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + + G N M Sbjct: 154 NTRRH-----------------------------------YKEQGITLPAMVPGGPDNPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + Y +H T F +R +SGC+R+R D+ L D P +R Sbjct: 179 GLFALRLEKSGGVYSIHGTNAD--FGIGMR-VSSGCIRLR-PEDI-EALFNDAPVGTRVQ 233 Query: 368 I 368 I Sbjct: 234 I 234 >gi|270261600|ref|ZP_06189873.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia odorifera 4Rx13] gi|270045084|gb|EFA18175.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia odorifera 4Rx13] Length = 337 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L G+ + + +G+ TP+ + +++ + NP W Sbjct: 94 DTKREGIVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTA 153 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I ++ + G N M Sbjct: 154 NIRKR-----------------------------------YQAKGVTLPAVIPAGPENPM 178 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDT 360 + + Y +H T F +R +SGC+R+R +I L + + T Sbjct: 179 GLFAMRLAMGHGEYLIHGTNAN--FGIGMR-VSSGCIRLRPKDIEALFNMVPRGT 230 >gi|126665585|ref|ZP_01736567.1| hypothetical protein MELB17_23370 [Marinobacter sp. ELB17] gi|126630213|gb|EBA00829.1| hypothetical protein MELB17_23370 [Marinobacter sp. ELB17] Length = 336 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 42/174 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +++N+ L + V V VG + +P+ ++++ + +P W P S Sbjct: 103 DAKREGIVINLAEYRLYYFTDSGVQ-VYPVGVGTEENPSPLTNAQVTMALTSPAWYPPES 161 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I + ++ PG N + Sbjct: 162 IRAE-----------------------------------HAAVGDFLPRMIPPGPDNPLG 186 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 S + + +H T + F + + GC R+ +I + + TP Sbjct: 187 SHALILSEK-GYLIHGTNKK--FGVGM-AVSHGCFRMYNEDISRFAYQIAQGTP 236 >gi|159028343|emb|CAO87241.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 166 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 52/161 (32%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +L+N+ + + K+ V +GR +TP R+ +++ P W P + Sbjct: 35 TRTETRLLLNLKKRRVFVYQGQKIIASYPVAIGRPGWETPTGQFRVIQMVREPVWEHPFT 94 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 G+ V GK N + Sbjct: 95 ----------------------------GQLV-------------------PSGKNNPLG 107 Query: 310 STKIEFYSRNN--TYMHDTPEPILFNNVVRFETSGCVRVRN 348 + I F++ H TP+ L R + GCVR+R+ Sbjct: 108 ARWIGFWTDGANFIGFHGTPQENLIG---RAVSHGCVRMRD 145 >gi|226330340|ref|ZP_03805858.1| hypothetical protein PROPEN_04257 [Proteus penneri ATCC 35198] gi|225201135|gb|EEG83489.1| hypothetical protein PROPEN_04257 [Proteus penneri ATCC 35198] Length = 305 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + G + +G++ R+TP + + I++++ +P W +I + Sbjct: 98 IVINLAELRLYYYPKEGGTVDVYPIGIGQLGRETPEMVTSISQLIKDPTWTPTANIRKN- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N M + + Sbjct: 157 ----------------------------------YAAKGITLPAVVPAGPENPMGAYALR 182 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T F +R +SGC+R+R D+ L P SR + Sbjct: 183 LAHSRGEYLIHGTNAD--FGIGLR-VSSGCIRLR-PNDI-ETLFNVVPKGSRVQV 232 >gi|117923807|ref|YP_864424.1| ErfK/YbiS/YcfS/YnhG family protein [Magnetococcus sp. MC-1] gi|117607563|gb|ABK43018.1| ErfK/YbiS/YcfS/YnhG family protein [Magnetococcus sp. MC-1] Length = 362 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 44/190 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L +++N+P L V +GR TPI ++I R P W Sbjct: 125 LPTDIHQGTALVINLPEMRLYHRRADGRLETFPVGIGREGFDTPISRAKIIRKKSAPSWY 184 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P SI ++ P PG Sbjct: 185 VPASIREE---------------------------------------NPKLPAVIPPGAS 205 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N + S I +H T +P R + GC+R+ D+ + Sbjct: 206 NPLGSHAIYLSLP-GYLIHGTNKPYGIG---RRVSHGCIRMY-PEDIPRLYTSARVGATV 260 Query: 366 YHIEEVVKTR 375 + E K Sbjct: 261 AIVNEPAKAG 270 >gi|218509616|ref|ZP_03507494.1| hypothetical protein RetlB5_20073 [Rhizobium etli Brasil 5] Length = 178 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 32/183 (17%) Query: 212 KVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + R+ + NP + + +Q Y Sbjct: 3 AERFHMDEAFLKGNEPRRRISASPGTVIKVVNPGETKSGEVARIIADKARKQVFAYDGAG 62 Query: 270 NIHMID------------EKGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAM 308 N+ V + P F+Q PG + Sbjct: 63 NLLAAYPASIGSTDTPSPSGNVTVERVAFNPGYTYNPKINFQQGANDKILNIPPGPNGPV 122 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRY 366 + + +H TPEP R ++ GC+R+ N +L + P + Sbjct: 123 GTVWMALSKP-TYGIHGTPEPSKIG---RTQSHGCIRLTNWDATELAKMV---KPGVTVE 175 Query: 367 HIE 369 ++ Sbjct: 176 FVD 178 >gi|295698357|ref|YP_003603012.1| LysM domain protein [Candidatus Riesia pediculicola USDA] gi|291157235|gb|ADD79680.1| LysM domain protein [Candidatus Riesia pediculicola USDA] Length = 319 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 72/244 (29%), Gaps = 50/244 (20%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +E + FQ+ GL + ++ + P I Q+ ++ Sbjct: 56 ESLEDIMSRFQV--GLLGTLRINPKIDVYLPRPGSQIIIPSQM-------IIPNLKEDED 106 Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +L+N+ L + + V +G+ + TP ++I +++ P W IP I+K Sbjct: 107 ILINLAELRLYHFLKKKNIVSVYPVGIGQKEASTPTFEAKIIQMIKKPIW-IPTKNIRKR 165 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 E G N M + Sbjct: 166 ----------------------------------YELEGIKLPEVVPSGINNPMGMYAMR 191 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T F R TSGC+R+R D+ I E +K Sbjct: 192 LSYGKGEYLIHGTN--ENFGIGSR-VTSGCIRLRK-EDIKKLFSSVKIGDKVRVINEPIK 247 Query: 374 TRKT 377 K Sbjct: 248 YSKE 251 >gi|226942145|ref|YP_002797219.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] gi|226717072|gb|ACO76210.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] Length = 365 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 56/173 (32%), Gaps = 45/173 (26%) Query: 196 VLVNIPAASLEAV---ENGKVGL--RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V+VN+ L G+ V V + TP+ +R+ + +P W +PRSI Sbjct: 102 VVVNVAQRRLFYFPPAREGEPRKVITFPVGVAKEGWSTPLGSTRVTSKLRDPGWSVPRSI 161 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + F PG N M Sbjct: 162 KAEK----------------------------------EAENGLPFPDYVPPGPDNPMGM 187 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 I + ++H T +P +R + GC+++ N L L K+TP Sbjct: 188 LAIGTGFP-SIFIHATNKPW--GVGMRQ-SHGCIQLYPENAKLLFDTLPKNTP 236 >gi|172037339|ref|YP_001803840.1| hypothetical protein cce_2426 [Cyanothece sp. ATCC 51142] gi|171698793|gb|ACB51774.1| unknown [Cyanothece sp. ATCC 51142] Length = 198 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 58/210 (27%), Gaps = 70/210 (33%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L + V EA + L ++++N+ + A ++ Sbjct: 46 LPATSTVTPPVEEAAIPTPPETTQTLA----------------THLVLNLKERRVYAYQD 89 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 +V V +G+ +TP + +++ +P W P Sbjct: 90 DQVIANYPVAIGKPGWETPRGDFSVIQMVEDPQWKNP----------------------- 126 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM--HDTPE 328 V G + + I F+ Y+ H TP Sbjct: 127 ------WNGRVS------------------AAGPNSPLGERWIGFWREGGKYIGFHGTPG 162 Query: 329 PILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + + GCVR+RN + L + Sbjct: 163 EHVMGQ---AVSHGCVRMRNRDVKALYELV 189 >gi|238895185|ref|YP_002919920.1| putative ATP synthase subunit [Klebsiella pneumoniae NTUH-K2044] gi|238547502|dbj|BAH63853.1| putative ATP synthase subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 328 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + ++VN+ L G+ + +G++ +TP + +R+ + + NP W Sbjct: 93 DVPREGIVVNLAELRLYYFPPGENQVQVYPLGIGQLGLETPEMTTRVGQKIPNPTWTPTA 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I + + + G N + Sbjct: 153 GIRARSL-----------------------------------EKGVTLPAVVPAGPNNPL 177 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + N Y +H T P +SGC+R+ N D+ L T + Sbjct: 178 GRYALRLAYGNGEYLIHGTNAPDSVG---LRVSSGCMRM-NADDI-KALFSQVKTGTPVR 232 Query: 368 I 368 I Sbjct: 233 I 233 >gi|152970684|ref|YP_001335793.1| putative ATP synthase subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262044179|ref|ZP_06017251.1| ErfK/srfK family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012607|ref|ZP_08307442.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] gi|150955533|gb|ABR77563.1| putative ATP synthase subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259038476|gb|EEW39675.1| ErfK/srfK family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533766|gb|EGF60455.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] Length = 328 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + ++VN+ L G+ + +G++ +TP + +R+ + + NP W Sbjct: 93 DVPREGIVVNLAELRLYYFPPGENQVQVYPLGIGQLGLETPEMTTRVGQKIPNPTWTPTA 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I + + + G N + Sbjct: 153 GIRARSL-----------------------------------EKGVTLPAVVPAGPNNPL 177 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + N Y +H T P +SGC+R+ N D+ L T + Sbjct: 178 GRYALRLAYGNGEYLIHGTNAPDSVG---LRVSSGCMRM-NADDI-KALFSQVKTGTPVR 232 Query: 368 I 368 I Sbjct: 233 I 233 >gi|327393725|dbj|BAK11147.1| ErfK/YbiS/YcfS/YnhG family protein YcfS [Pantoea ananatis AJ13355] Length = 326 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 52/227 (22%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 +E +Q+ GL + T + P LQ+ L ++ Sbjct: 52 LEEIAARYQV--GLLGMLEANPGTDPWLPKPGTQLTIPLQMIL--------PDTPREGIV 101 Query: 198 VNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VN+ L G+ + + +G++ TPI+ + I++ + NP W +I ++ Sbjct: 102 VNLAELRLYYYPKGEDKVIVYPIGIGQMGIVTPIMVTSISQKIPNPTWTPTANIRKR--- 158 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 + E G N M + Sbjct: 159 --------------------------------YAKEGITLPAVVPAGPDNPMGLHALRMA 186 Query: 317 SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 Y +H T F +R +SGC+R+ +I L + T Sbjct: 187 RGTGQYLIHGTNAN--FGIGMR-VSSGCIRLRTEDIEALFNSVPVGT 230 >gi|291617273|ref|YP_003520015.1| YcfS [Pantoea ananatis LMG 20103] gi|291152303|gb|ADD76887.1| YcfS [Pantoea ananatis LMG 20103] Length = 326 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 70/227 (30%), Gaps = 52/227 (22%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 +E +Q+ GL + T + P LQ+ L ++ Sbjct: 52 LEEIAARYQV--GLLGMLEANPGTDPWLPKPGTQLTIPLQMIL--------PDTPREGIV 101 Query: 198 VNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VN+ L G+ + + +G++ TPI+ + I++ + NP W +I ++ Sbjct: 102 VNLAELRLYYYPKGEDKVIVYPIGIGQMGIVTPIMVTSISQKIPNPTWTPTANIRKR--- 158 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 + E G N M + Sbjct: 159 --------------------------------YAKEGITLPAVVPAGPDNPMGLHALRMA 186 Query: 317 SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 Y +H T F +R +SGC+R+ +I L + T Sbjct: 187 RGTGQYLIHGTNAN--FGIGMR-VSSGCIRLRTEDIEALFNSVPVGT 230 >gi|255019839|ref|ZP_05291915.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] gi|254970768|gb|EET28254.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] Length = 309 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 42/169 (24%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++++IPA L KV V + R P+ +RI + NP W +P++I ++ Sbjct: 64 IVIDIPARRLYYFPPEQKVVYTYPVGIFRPKWPDPLGSTRIIAKVKNPSWTVPKNIQEE- 122 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ PG N M +E Sbjct: 123 ----------------------------------HAKAGEPIPAYFPPGPDNPMGELALE 148 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 Y+H T +P +R + GC V N + L + TP Sbjct: 149 TGWSQ-IYIHGTNKPW--GVGMR-VSHGCFHVYPENEVQLFKMVRVGTP 193 >gi|222054295|ref|YP_002536657.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. FRC-32] gi|221563584|gb|ACM19556.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. FRC-32] Length = 304 Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 47/176 (26%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENG--KVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ Q +++N+ L G K L V +G ++TP+ + + NP Sbjct: 100 WIIPQLPVQEGIVINLAEMRLYFFAPGDRKRILTFPVSIGEAGKETPLGSFSVIEKLANP 159 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI+Q+ LR+ Sbjct: 160 VWHVPPSILQER--PELRKTVA-------------------------------------A 180 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 G N + S + ++ +H T P R + GC+R+ +I+ L + Sbjct: 181 GPDNPLGSRALRLSIKD-VLIHGTNRPW--GQGRR-VSHGCLRLYPEDILQLYEAV 232 >gi|237806833|ref|YP_002891273.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] gi|237499094|gb|ACQ91687.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] Length = 307 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 42/165 (25%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ + +++N+ L GK + +G++ TP + + R NP Sbjct: 91 LILPDTPRQGIVINVAEMRLYYYPKGKNTVEVLPIGIGQLGTDTPENWVTSVQRKRANPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + ++ + + G Sbjct: 151 WTPTAKVRRE-----------------------------------YAEKGEPLPAVWPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N M + + H T P F +R + GCVR+RN Sbjct: 176 PDNPMGLFALYIGNLYAI--HGTNAP--FGIGLR-VSHGCVRLRN 215 >gi|311279432|ref|YP_003941663.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308748627|gb|ADO48379.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 333 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 41/190 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + + ++VN+ L +G+ + +G++ TP + +R+ + + NP W Sbjct: 88 LLLPDVPRKGIVVNLAELRLYYFPPDGRSVQVYPLGIGQLGLATPEMTTRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + G Sbjct: 148 TPTPGIRQRSL-----------------------------------ERGVSLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + + Y +H T P +SGC+R+ D+ ++ Sbjct: 173 NNPLGRYALRLAYGSGEYLIHGTNAPSSVG---LRVSSGCMRMF-PDDIKALFMQVGVGT 228 Query: 364 SRYHIEEVVK 373 I + VK Sbjct: 229 PVRVINQPVK 238 >gi|108758605|ref|YP_628829.1| penicillin-resistant DD-carboxypeptidase [Myxococcus xanthus DK 1622] gi|5701723|dbj|BAA83081.1| penicillin-resistant DD-carboxypeptidase [Myxococcus xanthus] gi|108462485|gb|ABF87670.1| penicillin-resistant DD-carboxypeptidase [Myxococcus xanthus DK 1622] Length = 302 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 81/287 (28%), Gaps = 35/287 (12%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + + + + + + F+ + P A I+ Sbjct: 22 TLRSGARGAAVTQLQNKLRAAGFNPGASDGV-----FGPKTQSAVQAFQRARGLQVDGIV 76 Query: 90 SRGGWPELPIR--------PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 W L L G V+ L++RL + G S F +SA Sbjct: 77 GPKTWSALNSAGGAGGSGPTLRNGARGEPVRALQQRLNVLGF--KSGTADGVFGPKTQSA 134 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ GL G+V T + + + V + R + Sbjct: 135 VKAFQQSRGLVADGIVGPKTWDKLGINVQGPVTNPGGGGGGRVVTGYVNGKPRQI----- 189 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 SL +V NGK +R ++ + N + RS+ +++ + + Sbjct: 190 --SLSSVPNGKEMRSDAAAA--YNRMYAAARAQGITLKVNSGF---RSMAEQEALYRAYK 242 Query: 262 D--------PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 + P Y +D W + NF F + Sbjct: 243 NGTGNLAAPPGYSNHQGGIAVDVNTGGTGTSTYRWMANNAKNFGFVR 289 >gi|301026908|ref|ZP_07190304.1| LysM domain protein [Escherichia coli MS 69-1] gi|331663155|ref|ZP_08364065.1| putative LysM domain protein [Escherichia coli TA143] gi|300395255|gb|EFJ78793.1| LysM domain protein [Escherichia coli MS 69-1] gi|331058954|gb|EGI30931.1| putative LysM domain protein [Escherichia coli TA143] Length = 334 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 62/206 (30%), Gaps = 43/206 (20%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 Query: 362 -TWSRYHIEEVVKTRKTTPVKLATEV 386 ++ V+ T V++ + Sbjct: 230 VKVINEPVKYSVEPNGTRYVEVHRPL 255 >gi|114330477|ref|YP_746699.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas eutropha C91] gi|114307491|gb|ABI58734.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas eutropha C91] Length = 323 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 71/233 (30%), Gaps = 58/233 (24%) Query: 174 RQLQVNLMRIKKLLEQ-------------KMGLRYVLVNIPAASLEAVEN---GK--VGL 215 + N + L E+ + +++N+P L G+ + Sbjct: 68 EMMLANPNVNRWLPEEGAKVILPLRFIIPQAERTGLVINLPEMRLYYFPKPIKGQKPEII 127 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 V +GR+D TP+ + I R +P W P+S+ ++ + Sbjct: 128 THPVSIGRMDWNTPLGKTTIVRKQKDPTWTPPQSLRKEAI-------------------- 167 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 P + G N + + +H T +P Sbjct: 168 --------------EEGRPPLLDVVPAGPDNPLGKYALYLGLP-GYLIHGTNKP--LGVG 210 Query: 336 VRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 +R T GC+R+ +I +L + TP ++ ++L + Sbjct: 211 MR-VTHGCMRLYPEDIEELFNLIPTGTPVQIVNQPIKLGWQGDLLYIELHPPL 262 >gi|290968167|ref|ZP_06559712.1| ErfK/YbiS/YcfS/YnhG [Megasphaera genomosp. type_1 str. 28L] gi|290781842|gb|EFD94425.1| ErfK/YbiS/YcfS/YnhG [Megasphaera genomosp. type_1 str. 28L] Length = 340 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 50/229 (21%), Gaps = 79/229 (34%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 +N+ + L ENG+ V VG TP I NP W Sbjct: 47 INLASRILTLYENGQKAAIYAVGVGTRRTPTPTGRFVIQNKAVNPTW------------- 93 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 P N R PG N + + FY Sbjct: 94 ---------------------------------VNPQNTQMRIGPGPNNPVGKRWMGFYG 120 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 H T P + + GCVR+ + V Sbjct: 121 SYGI--HGTNHPESVGK---YVSHGCVRM--------------KGNDIEGLFSRVTVGT- 160 Query: 378 TPVKLATEVPVHFVYISAWSP--KDSIIQF--RDDIYGLDNVHVGIIPL 422 PV Y D I + D Y + + Sbjct: 161 ---------PVMIYYDRIVIDRASDHTISYYIYPDGYERQPLTAAQVQK 200 >gi|198282692|ref|YP_002219013.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665455|ref|YP_002424884.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247213|gb|ACH82806.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517668|gb|ACK78254.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 347 Score = 81.2 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+P L G+ V V + R P+ +RI + NP W +P++I ++ Sbjct: 98 IIINVPERRLFYFPPGQNVVYTYPVGIFRPKWPNPLGSTRIIAKVKNPTWTVPKNIQEE- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ G N M +E Sbjct: 157 ----------------------------------HAKVGEPIPAFFPAGPDNPMGELALE 182 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYH 367 ++H T +P +R + GC V N + L + TP + Sbjct: 183 TGWSQ-IFIHGTNKPW--GVGMR-VSHGCFHVYPENEVQLFKMVKVGTPVTTIDQ 233 >gi|82777157|ref|YP_403506.1| hypothetical protein SDY_1909 [Shigella dysenteriae Sd197] gi|309788340|ref|ZP_07682944.1| lysM domain protein [Shigella dysenteriae 1617] gi|81241305|gb|ABB62015.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308923722|gb|EFP69225.1| lysM domain protein [Shigella dysenteriae 1617] Length = 334 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLSHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|237731316|ref|ZP_04561797.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906855|gb|EEH92773.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 334 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 41/190 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPREGIIVNLAELRLYYFPPGENIVQVFPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I ++ + G Sbjct: 148 TPTPGIRKRSL-----------------------------------ERGITLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + N Y +H T P +SGC+R+ N D+ + Sbjct: 173 NNPLGRFALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRM-NAPDIKALFAQVRTGT 228 Query: 364 SRYHIEEVVK 373 I E +K Sbjct: 229 PVKVINEPIK 238 >gi|298529337|ref|ZP_07016740.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510773|gb|EFI34676.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 351 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 49/192 (25%) Query: 185 KLLEQKMGLRYVLVNIPAASL-EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 L + G +++N+P L + + V +GR +TP +R+ + + +P Sbjct: 117 ILPPTRHGE--IVINLPEMRLYRFYRDIDMVRTYPVGIGRDGFETPPGDARVQKRVEDPS 174 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P S PG Sbjct: 175 WTVPPS-----------------AREGFS------------------------RVVVPPG 193 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + I R++ +H T P R + GC+R+ + + Sbjct: 194 PDNPLGGYWIGLS-RDSLGIHGTNFPWGVG---RKVSRGCIRLY-PEHIQQFFYDVEAGA 248 Query: 364 SRYHIEEVVKTR 375 I E VK Sbjct: 249 KVEIIYEPVKLG 260 >gi|17230433|ref|NP_486981.1| hypothetical protein all2941 [Nostoc sp. PCC 7120] gi|17132035|dbj|BAB74640.1| all2941 [Nostoc sp. PCC 7120] Length = 572 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 33/214 (15%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P++ L G+ S V L+E+L G ++ FDA ++AV FQ + L Sbjct: 131 PQIATSKSSLKQGDISDRVMSLQEKLQADGYY--QGAITGNFDAATQAAVIQFQQANRLV 188 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G+V T + L L +Q + A Sbjct: 189 VDGIVGPQTSSVLASSTRKLAASLPQKTTLEPFLTQQPQNQVKISPQSAA---------- 238 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 P ++ I + P+S++ Q+ Y ++ I Sbjct: 239 ---------------PPSPSQKMRLIKTISGKISPKSVVYSGNGLFFAQNMMY--NHTIT 281 Query: 273 MIDEKGK--EVFVEEVDWNSPEPPNFIFRQDPGK 304 + D + +V +EVD + F + Sbjct: 282 VYDRNYELVKVIPDEVDLSKYGHSRFKGKYRGAP 315 Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L G+ + V L+++L SG F + E+AVK FQ +GL Sbjct: 51 PTVAA--LKKGHRNPQVASLQQKLRASGYFPQVAT--GYFGSVTEAAVKRFQQANGLKAD 106 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQ 177 G+V ++TL A+ + + + Sbjct: 107 GIVGAATLAALESSIGVSESSIT 129 >gi|146311422|ref|YP_001176496.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] gi|145318298|gb|ABP60445.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] Length = 337 Score = 80.8 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 51/241 (21%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D +++ + F L ++T+ + I +L Sbjct: 48 DKNLQAIARRFNTAAQLILE---TNNTIAPVYPAPGTVITIPSQ-------MLLPDTPRE 97 Query: 195 YVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G+ + + +G++ +TP+ +R+++ + NP W I + Sbjct: 98 GIVVNLAELRLYYFPPGENIVQVYPLGIGQLGLETPVSTTRVSQKIPNPTWTPTAGIRAR 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 158 SLA-----------------------------------QGIKLPPVVPAGPNNPLGRFAL 182 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + Y +H T P +SGC+R+ N D+ + I E V Sbjct: 183 RLGIGHGEYLIHGTSAPDSVG---LRVSSGCMRM-NAPDIKALFAQARVGTRVQIINEPV 238 Query: 373 K 373 K Sbjct: 239 K 239 >gi|296269327|ref|YP_003651959.1| peptidoglycan-binding domain 1 protein [Thermobispora bispora DSM 43833] gi|296092114|gb|ADG88066.1| Peptidoglycan-binding domain 1 protein [Thermobispora bispora DSM 43833] Length = 270 Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 75/262 (28%), Gaps = 67/262 (25%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L LG +V+ L+ RL G + + ++AV FQ HG+ PS V Sbjct: 58 PATTLRLGAKGAAVRALQARLKELGY--HPGKIDGRYGGATQAAVWAFQKVHGIKPSSTV 115 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T A+ P ++ L+ + R + VN+ + + G+ L S Sbjct: 116 GRRTWAALERPRAPKV------------LVPRGRPDR-IEVNLTQQIMVLYKKGRPVLIS 162 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + G S I + + K Sbjct: 163 HISSG----------SGIPYTE-------------------------------YVVWNGK 181 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE-PILFNNVV 336 + + +R + + Y+ + H + + Sbjct: 182 RQRFSGSAI--TPIGDFRTTWRVSGWHRSYLG----MLYNP--IFFHGGIALHGSLSVPL 233 Query: 337 RFETSGCVRVRNIIDLDVWLLK 358 + GCVR+ + + L + Sbjct: 234 YPASHGCVRL--PMHVASILPR 253 >gi|157145958|ref|YP_001453277.1| hypothetical protein CKO_01711 [Citrobacter koseri ATCC BAA-895] gi|157083163|gb|ABV12841.1| hypothetical protein CKO_01711 [Citrobacter koseri ATCC BAA-895] Length = 334 Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 53/231 (22%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D +++ + F L ++T+ + P I Q LL Sbjct: 48 DKNLQAIARRFDTAAMLILE---ANNTIAPVPKPGTPIIIPSQ--------LLLPDAPRE 96 Query: 195 YVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G+ + +G +TP++ +R+ + + NP W I ++ Sbjct: 97 GIIVNLAELRLYYFPPGENSVQVYPIGIGLEGLETPVMATRVGQKIPNPTWTPTAGIRKR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + G N + + Sbjct: 157 SL-----------------------------------ERGITLPPVVPAGPNNPLGRFAL 181 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N Y +H T P +SGC+R+ L + TP Sbjct: 182 RLAYGNGEYLIHGTNAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|115377053|ref|ZP_01464270.1| penicillin-resistant DD-carboxypeptidase [Stigmatella aurantiaca DW4/3-1] gi|310820371|ref|YP_003952729.1| penicillin-resistant dd-carboxypeptidase-like protein [Stigmatella aurantiaca DW4/3-1] gi|115365961|gb|EAU64979.1| penicillin-resistant DD-carboxypeptidase [Stigmatella aurantiaca DW4/3-1] gi|309393443|gb|ADO70902.1| penicillin-resistant DD-carboxypeptidase-like protein [Stigmatella aurantiaca DW4/3-1] Length = 303 Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 45/156 (28%), Gaps = 28/156 (17%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + + S+ F A +T A + A + ++ Sbjct: 21 TLKLGSSGASVKTLQQSLAKAGFSPGAADG---------QFGPKTAAAVK-AFQSAKGLV 70 Query: 90 SRG-----GW--------PELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + G W P P L G S V L+ RL G + Sbjct: 71 ADGIVGPKTWAKLNSAAAPSAPGGSGPTLKQGQSGAPVTALQNRLNQLGF--NAGAADGQ 128 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 F +AVK FQ GL G+V T + + V Sbjct: 129 FGPKTTAAVKAFQHSKGLVADGVVGPKTWNQLGIKV 164 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L LG+S SV+ L++ L +G F +AVK FQ GL G+V Sbjct: 18 SQPTLKLGSSGASVKTLQQSLAKAGF--SPGAADGQFGPKTAAAVKAFQSAKGLVADGIV 75 Query: 158 DSSTLEAMNVPVDLRI 173 T +N Sbjct: 76 GPKTWAKLNSAAAPSA 91 >gi|284929484|ref|YP_003422006.1| hypothetical protein UCYN_09450 [cyanobacterium UCYN-A] gi|284809928|gb|ADB95625.1| uncharacterized conserved protein [cyanobacterium UCYN-A] Length = 181 Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 47/166 (28%), Gaps = 54/166 (32%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++ +N+ + +N +V V +G+ +TP + + ++ NP W P Sbjct: 57 HISINLKERRVYVYQNSEVIKSYKVAIGKKGWETPKGNFAVMEMVENPQWKNP------- 109 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + G + + I Sbjct: 110 ----------------------WNGRIS------------------AAGPNSPLGERWIA 129 Query: 315 FYSRNN--TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 F ++ H T + GCVR+RN + +L + Sbjct: 130 FSQQDGKYVGFHGTAGEHSMGK---AVSHGCVRMRNQDVKELYELV 172 >gi|260881076|ref|ZP_05403544.2| ErfK/YbiS/YcfS/YnhG family protein [Mitsuokella multacida DSM 20544] gi|260849442|gb|EEX69449.1| ErfK/YbiS/YcfS/YnhG family protein [Mitsuokella multacida DSM 20544] Length = 412 Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 57/226 (25%), Gaps = 79/226 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 ++N+ A S+ A+ + + V G+V TP + ++ NP W P Sbjct: 77 VINLAARSIAAIRDNQKVALYPVGPGKVSTPTPTGYYKVIDKEVNPTWTDP--------- 127 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 + G N + I Sbjct: 128 -------------------------------------GDASASIPSGPSNPLGYRWIGIG 150 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 H T P + + ++GC+R+ I ++V+ Sbjct: 151 GNYGI--HGTNRPESIGH---YVSNGCIRMH--------------EEDVEKIYDMVEVGT 191 Query: 377 TTPVKLATEVPVHFVYISAWSP--KDSIIQF--RDDIYGLDNVHVG 418 PV Y D I + D YG NV Sbjct: 192 ----------PVEITYNRIVVEKTPDDQIAYYIYPDGYGWQNVTTA 227 >gi|224584279|ref|YP_002638077.1| periplasmic protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468806|gb|ACN46636.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 321 Score = 80.5 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAHGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|156934258|ref|YP_001438174.1| hypothetical protein ESA_02088 [Cronobacter sakazakii ATCC BAA-894] gi|156532512|gb|ABU77338.1| hypothetical protein ESA_02088 [Cronobacter sakazakii ATCC BAA-894] Length = 344 Score = 80.5 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 47/163 (28%), Gaps = 40/163 (24%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++VN+ L G+ + + +G R+TP++ +RI + + NP W Sbjct: 92 DTPREGIVVNLAELRLYYYPPGENRVEVYPIGIGLTGRETPVMTTRIIQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 ++ + + + G N + Sbjct: 152 AMRAR-----------------------------------SQAQGITLPAVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 + Y +H T +SGC+R+R Sbjct: 177 GRFALRLQQGGGEYLIHGTNARSSIG---LRASSGCIRMRAAD 216 >gi|324113443|gb|EGC07418.1| ykud domain-containing protein [Escherichia fergusonii B253] gi|325497145|gb|EGC95004.1| hypothetical protein ECD227_1242 [Escherichia fergusonii ECD227] Length = 333 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 40/167 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 N + + N Y +H T P +SGC+R+ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPD 216 >gi|218548736|ref|YP_002382527.1| hypothetical protein EFER_1374 [Escherichia fergusonii ATCC 35469] gi|218356277|emb|CAQ88895.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] Length = 333 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|150390862|ref|YP_001320911.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] gi|149950724|gb|ABR49252.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] Length = 332 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 60/263 (22%), Gaps = 88/263 (33%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS--STLEAMNVPVDLRIRQ 175 L G D +A+ FQ H L G+ T+ + V R Sbjct: 49 LKTLGYFHEDTKQQ---DINKRNAIIRFQSEHNLTVDGIYGPQSETVLSALVNGSER--- 102 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + + + +++ +N L E KV + V G+ TP I Sbjct: 103 -----RYLDVIDQPPTKGKWMTINKTKRILTLYEGDKVMKKYPVAQGKEPGLTPEGKFTI 157 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + NP W Sbjct: 158 VNKLVNPGWG----------------------------------------------GAGI 171 Query: 296 FIFRQDPGKINAMASTKIEF-------------YSRNNTYMHDTPEPILFNNVVRFETSG 342 + N + + + + T + G Sbjct: 172 AQPVKGGSPNNPLGYRWMGINHGGGGSYGIHGNNNPRSI---GTNA-----------SLG 217 Query: 343 CVRVRNII--DLDVWLLKDTPTW 363 CVR+ N +L + TP W Sbjct: 218 CVRMINSDVAELFDIISLKTPVW 240 >gi|117623857|ref|YP_852770.1| hypothetical protein APECO1_755 [Escherichia coli APEC O1] gi|218558547|ref|YP_002391460.1| hypothetical protein ECS88_1728 [Escherichia coli S88] gi|237705624|ref|ZP_04536105.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|115512981|gb|ABJ01056.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365316|emb|CAR03037.1| conserved hypothetical protein [Escherichia coli S88] gi|226900381|gb|EEH86640.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294492763|gb|ADE91519.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli IHE3034] gi|315286396|gb|EFU45832.1| LysM domain protein [Escherichia coli MS 110-3] gi|323952185|gb|EGB48058.1| ykud domain-containing protein [Escherichia coli H252] gi|323956579|gb|EGB52317.1| ykud domain-containing protein [Escherichia coli H263] Length = 334 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|117619176|ref|YP_858054.1| LysM domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560583|gb|ABK37531.1| LysM domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 344 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 68/239 (28%), Gaps = 54/239 (22%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 +E+A FQ+ GL + N D + Q L+ +L+ Sbjct: 87 GQPLEAAAAKFQL--GLTN--------MLEANPKADPLLLQTGEKLIVPHQLILPDAPRE 136 Query: 195 YVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQ 252 +++N+ L GK V + +G++ TP + + R P W + Sbjct: 137 GIVLNVAEMRLYYYPKGKKVVEVLPIGIGQLGTDTPENWVTSVQRKKAGPTWTPTAKMHA 196 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 + + + G N M Sbjct: 197 E-----------------------------------YAARGESLPAVWPAGPDNPMGLFA 221 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 + H T F +R + GCVR+RN D +L K P +R Sbjct: 222 LYIGKMYAI--HGTNAQ--FGIGLR-VSHGCVRLRN--DDIEYLFKKVPVGTRVQFVNQ 273 >gi|284052766|ref|ZP_06382976.1| ErfK/YbiS/YcfS/YnhG [Arthrospira platensis str. Paraca] gi|291565859|dbj|BAI88131.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 208 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 52/199 (26%), Gaps = 59/199 (29%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLM------RIKKLL-EQKMGLRYVLVNIPAASLEAVENG 211 TL A + Q +N + L ++ V++ + + Sbjct: 40 EQTLSASASAPRIYPYQSILNPDVPPLDDPSQFLPIGEQQAPVKVVLRLGERRVYVYRGE 99 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 V VG+ +TP ++ + NP W P Sbjct: 100 SQIASYPVAVGKPGWETPTGTFQVTEKVENPQWENP------------------------ 135 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS--RNNTYMHDTPEP 329 W + G +A+ I F+ ++ H TP Sbjct: 136 ----------------WTGE-------VRPAGPNSALGLRWIGFWHDGKDAIGFHGTPTV 172 Query: 330 ILFNNVVRFETSGCVRVRN 348 + GCVR+RN Sbjct: 173 NSIGQ---AASHGCVRMRN 188 >gi|194434782|ref|ZP_03067032.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella dysenteriae 1012] gi|194416951|gb|EDX33070.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella dysenteriae 1012] gi|332093910|gb|EGI98963.1| lysM domain protein [Shigella dysenteriae 155-74] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 40/167 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 N + + N Y +H T P +SGC+R+ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPD 216 >gi|166366985|ref|YP_001659258.1| ErfK/YbiS/YcfS/YnhG family protein [Microcystis aeruginosa NIES-843] gi|166089358|dbj|BAG04066.1| ErfK/YbiS/YcfS/YnhG family protein [Microcystis aeruginosa NIES-843] Length = 166 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 52/154 (33%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 L+N+ + + K+ V +GR +TP R+ ++ P W P + Sbjct: 42 LLNLKKRRVFVYQGQKIIASYPVAIGRRGWETPTGQFRVIHMVREPVWEHPFT------- 94 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 G+ V GK N + + I F+ Sbjct: 95 ---------------------GQLV-------------------PSGKNNPLGARWIGFW 114 Query: 317 SRNN--TYMHDTPEPILFNNVVRFETSGCVRVRN 348 + H TP+ L R + GCVR+R+ Sbjct: 115 TDGANFIGFHGTPQENLIG---RAVSHGCVRMRD 145 >gi|300924713|ref|ZP_07140659.1| LysM domain protein [Escherichia coli MS 182-1] gi|301326558|ref|ZP_07219899.1| LysM domain protein [Escherichia coli MS 78-1] gi|300419091|gb|EFK02402.1| LysM domain protein [Escherichia coli MS 182-1] gi|300846778|gb|EFK74538.1| LysM domain protein [Escherichia coli MS 78-1] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|322421011|ref|YP_004200234.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M18] gi|320127398|gb|ADW14958.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M18] Length = 303 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 48/195 (24%) Query: 185 KLLEQ--KMGLRYVLVNIPAASLEAVENGK--VGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + V+VN+ L L + +G TP+ I Sbjct: 92 WIPPAVSESERPSVVVNLAELRLFLFPKDSRSDILSFPIGIGDEGTDTPVGTYHIIEKTV 151 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 +PYW +P+SI ++ P Sbjct: 152 SPYWRVPKSIRRQR---------------------------------------PELPGVV 172 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N + S + R++ +H T P R + GC+R+ D+ + + Sbjct: 173 PPGPENPLGSHALRLS-RDSILIHGTNRPWGVG---RRSSHGCLRLY-PEDIAELFQRVS 227 Query: 361 PTWSRYHIEEVVKTR 375 I + VK Sbjct: 228 KGMRVTIINQPVKIG 242 >gi|309701903|emb|CBJ01215.1| putative peptidoglycan-binding protein [Escherichia coli ETEC H10407] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|260843984|ref|YP_003221762.1| hypothetical protein ECO103_1821 [Escherichia coli O103:H2 str. 12009] gi|257759131|dbj|BAI30628.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|218705176|ref|YP_002412695.1| hypothetical protein ECUMN_1967 [Escherichia coli UMN026] gi|293405176|ref|ZP_06649168.1| L,D-transpeptidase YnhG [Escherichia coli FVEC1412] gi|298380819|ref|ZP_06990418.1| ynhG protein [Escherichia coli FVEC1302] gi|218432273|emb|CAR13163.1| conserved hypothetical protein [Escherichia coli UMN026] gi|291427384|gb|EFF00411.1| L,D-transpeptidase YnhG [Escherichia coli FVEC1412] gi|298278261|gb|EFI19775.1| ynhG protein [Escherichia coli FVEC1302] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|193068955|ref|ZP_03049914.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] gi|192957750|gb|EDV88194.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|290509071|ref|ZP_06548442.1| ynhG [Klebsiella sp. 1_1_55] gi|289778465|gb|EFD86462.1| ynhG [Klebsiella sp. 1_1_55] Length = 328 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + ++VN+ L G+ + +G++ +TP + +RI + + NP W Sbjct: 93 DVPREGIVVNLAELRLYYFPPGENQVQVYPLGIGQLGLETPEMTTRIGQKIPNPTWTPTA 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I + + + G N + Sbjct: 153 GIRARSL-----------------------------------EKGVTLPAVVPAGPYNPL 177 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + N Y +H T P +SGC+R+ N D+ L T + Sbjct: 178 GRYALRLAYGNGEYLIHGTNAPDSVG---LRVSSGCMRM-NADDI-KALFNQVKTGTPVR 232 Query: 368 I 368 I Sbjct: 233 I 233 >gi|209769214|gb|ACI82919.1| hypothetical protein ECs2385 [Escherichia coli] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|218699757|ref|YP_002407386.1| hypothetical protein ECIAI39_1380 [Escherichia coli IAI39] gi|218369743|emb|CAR17514.1| conserved hypothetical protein [Escherichia coli IAI39] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|74311997|ref|YP_310416.1| hypothetical protein SSON_1478 [Shigella sonnei Ss046] gi|73855474|gb|AAZ88181.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323169246|gb|EFZ54922.1| lysM domain protein [Shigella sonnei 53G] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|24113067|ref|NP_707577.1| hypothetical protein SF1707 [Shigella flexneri 2a str. 301] gi|30063192|ref|NP_837363.1| hypothetical protein S1840 [Shigella flexneri 2a str. 2457T] gi|110805655|ref|YP_689175.1| hypothetical protein SFV_1701 [Shigella flexneri 5 str. 8401] gi|157159013|ref|YP_001462972.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] gi|191167846|ref|ZP_03029651.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] gi|209918992|ref|YP_002293076.1| hypothetical protein ECSE_1801 [Escherichia coli SE11] gi|218554244|ref|YP_002387157.1| hypothetical protein ECIAI1_1730 [Escherichia coli IAI1] gi|218695239|ref|YP_002402906.1| hypothetical protein EC55989_1845 [Escherichia coli 55989] gi|256018128|ref|ZP_05431993.1| hypothetical protein ShiD9_04383 [Shigella sp. D9] gi|260855502|ref|YP_003229393.1| hypothetical protein ECO26_2406 [Escherichia coli O26:H11 str. 11368] gi|260868169|ref|YP_003234571.1| hypothetical protein ECO111_2147 [Escherichia coli O111:H- str. 11128] gi|293446052|ref|ZP_06662474.1| ynhG protein [Escherichia coli B088] gi|300820069|ref|ZP_07100245.1| LysM domain protein [Escherichia coli MS 107-1] gi|300821449|ref|ZP_07101596.1| LysM domain protein [Escherichia coli MS 119-7] gi|300904529|ref|ZP_07122368.1| LysM domain protein [Escherichia coli MS 84-1] gi|301303193|ref|ZP_07209319.1| LysM domain protein [Escherichia coli MS 124-1] gi|307310751|ref|ZP_07590397.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|309793444|ref|ZP_07687871.1| LysM domain protein [Escherichia coli MS 145-7] gi|331668362|ref|ZP_08369210.1| putative LysM domain protein [Escherichia coli TA271] gi|331677549|ref|ZP_08378224.1| putative LysM domain protein [Escherichia coli H591] gi|332279173|ref|ZP_08391586.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Shigella sp. D9] gi|24052040|gb|AAN43284.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041444|gb|AAP17172.1| hypothetical protein S1840 [Shigella flexneri 2a str. 2457T] gi|110615203|gb|ABF03870.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157081043|gb|ABV20751.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] gi|190902105|gb|EDV61849.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] gi|209912251|dbj|BAG77325.1| conserved hypothetical protein [Escherichia coli SE11] gi|218351971|emb|CAU97703.1| conserved hypothetical protein [Escherichia coli 55989] gi|218361012|emb|CAQ98587.1| conserved hypothetical protein [Escherichia coli IAI1] gi|257754151|dbj|BAI25653.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257764525|dbj|BAI36020.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|281601115|gb|ADA74099.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella flexneri 2002017] gi|291322882|gb|EFE62310.1| ynhG protein [Escherichia coli B088] gi|300403523|gb|EFJ87061.1| LysM domain protein [Escherichia coli MS 84-1] gi|300525952|gb|EFK47021.1| LysM domain protein [Escherichia coli MS 119-7] gi|300527374|gb|EFK48436.1| LysM domain protein [Escherichia coli MS 107-1] gi|300841602|gb|EFK69362.1| LysM domain protein [Escherichia coli MS 124-1] gi|306908929|gb|EFN39425.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|308123031|gb|EFO60293.1| LysM domain protein [Escherichia coli MS 145-7] gi|313648960|gb|EFS13397.1| lysM domain protein [Shigella flexneri 2a str. 2457T] gi|315060983|gb|ADT75310.1| murein L,D-transpeptidase [Escherichia coli W] gi|315257519|gb|EFU37487.1| LysM domain protein [Escherichia coli MS 85-1] gi|320181296|gb|EFW56215.1| L,D-transpeptidase YnhG [Shigella boydii ATCC 9905] gi|323152815|gb|EFZ39085.1| lysM domain protein [Escherichia coli EPECa14] gi|323163472|gb|EFZ49298.1| lysM domain protein [Escherichia coli E128010] gi|323180994|gb|EFZ66532.1| lysM domain protein [Escherichia coli 1180] gi|323186049|gb|EFZ71405.1| lysM domain protein [Escherichia coli 1357] gi|323378445|gb|ADX50713.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] gi|323948027|gb|EGB44019.1| ykud domain-containing protein [Escherichia coli H120] gi|324016508|gb|EGB85727.1| LysM domain protein [Escherichia coli MS 117-3] gi|324119162|gb|EGC13050.1| ykud domain-containing protein [Escherichia coli E1167] gi|331063556|gb|EGI35467.1| putative LysM domain protein [Escherichia coli TA271] gi|331074009|gb|EGI45329.1| putative LysM domain protein [Escherichia coli H591] gi|332101525|gb|EGJ04871.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Shigella sp. D9] gi|332343397|gb|AEE56731.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332756998|gb|EGJ87341.1| lysM domain protein [Shigella flexneri 4343-70] gi|332757787|gb|EGJ88116.1| lysM domain protein [Shigella flexneri 2747-71] gi|332758519|gb|EGJ88840.1| lysM domain protein [Shigella flexneri K-671] gi|332766884|gb|EGJ97084.1| putative L,D-transpeptidase YcfS [Shigella flexneri 2930-71] gi|333003811|gb|EGK23347.1| lysM domain protein [Shigella flexneri VA-6] gi|333003966|gb|EGK23501.1| lysM domain protein [Shigella flexneri K-218] gi|333005920|gb|EGK25436.1| lysM domain protein [Shigella flexneri K-272] gi|333018052|gb|EGK37357.1| lysM domain protein [Shigella flexneri K-304] gi|333018835|gb|EGK38128.1| lysM domain protein [Shigella flexneri K-227] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|16129634|ref|NP_416193.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|89108518|ref|AP_002298.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|157161143|ref|YP_001458461.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] gi|170019972|ref|YP_001724926.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|170081338|ref|YP_001730658.1| hypothetical protein ECDH10B_1812 [Escherichia coli str. K-12 substr. DH10B] gi|194438521|ref|ZP_03070610.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 101-1] gi|238900893|ref|YP_002926689.1| hypothetical protein BWG_1492 [Escherichia coli BW2952] gi|253773365|ref|YP_003036196.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161739|ref|YP_003044847.1| hypothetical protein ECB_01647 [Escherichia coli B str. REL606] gi|256022659|ref|ZP_05436524.1| hypothetical protein E4_04749 [Escherichia sp. 4_1_40B] gi|300930852|ref|ZP_07146222.1| LysM domain protein [Escherichia coli MS 187-1] gi|300951270|ref|ZP_07165119.1| LysM domain protein [Escherichia coli MS 116-1] gi|300958559|ref|ZP_07170689.1| LysM domain protein [Escherichia coli MS 175-1] gi|301027877|ref|ZP_07191178.1| LysM domain protein [Escherichia coli MS 196-1] gi|312969703|ref|ZP_07783886.1| lysM domain protein [Escherichia coli 1827-70] gi|3025249|sp|P76193|YNHG_ECOLI RecName: Full=Probable L,D-transpeptidase YnhG; Flags: Precursor gi|1787968|gb|AAC74748.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|85675073|dbj|BAA15458.2| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|157066823|gb|ABV06078.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] gi|169754900|gb|ACA77599.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|169889173|gb|ACB02880.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|194422531|gb|EDX38529.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 101-1] gi|238860319|gb|ACR62317.1| conserved protein [Escherichia coli BW2952] gi|242377405|emb|CAQ32154.1| L,D-transpeptidase YnhG [Escherichia coli BL21(DE3)] gi|253324409|gb|ACT29011.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973640|gb|ACT39311.1| hypothetical protein ECB_01647 [Escherichia coli B str. REL606] gi|253977835|gb|ACT43505.1| hypothetical protein ECD_01647 [Escherichia coli BL21(DE3)] gi|260449199|gb|ACX39621.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|299879033|gb|EFI87244.1| LysM domain protein [Escherichia coli MS 196-1] gi|300314768|gb|EFJ64552.1| LysM domain protein [Escherichia coli MS 175-1] gi|300449451|gb|EFK13071.1| LysM domain protein [Escherichia coli MS 116-1] gi|300461327|gb|EFK24820.1| LysM domain protein [Escherichia coli MS 187-1] gi|310337988|gb|EFQ03077.1| lysM domain protein [Escherichia coli 1827-70] gi|315136319|dbj|BAJ43478.1| hypothetical protein ECDH1ME8569_1622 [Escherichia coli DH1] gi|315618873|gb|EFU99456.1| lysM domain protein [Escherichia coli 3431] gi|323937281|gb|EGB33560.1| ykud domain-containing protein [Escherichia coli E1520] gi|323940655|gb|EGB36846.1| ykud domain-containing protein [Escherichia coli E482] gi|323962169|gb|EGB57764.1| ykud domain-containing protein [Escherichia coli H489] gi|323973943|gb|EGB69115.1| ykud domain-containing protein [Escherichia coli TA007] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|301647861|ref|ZP_07247643.1| LysM domain protein [Escherichia coli MS 146-1] gi|301074002|gb|EFK88808.1| LysM domain protein [Escherichia coli MS 146-1] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|300898541|ref|ZP_07116874.1| LysM domain protein [Escherichia coli MS 198-1] gi|300357805|gb|EFJ73675.1| LysM domain protein [Escherichia coli MS 198-1] Length = 331 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|293409991|ref|ZP_06653567.1| conserved hypothetical protein [Escherichia coli B354] gi|331673236|ref|ZP_08374004.1| putative LysM domain protein [Escherichia coli TA280] gi|222033434|emb|CAP76175.1| Uncharacterized protein ynhG [Escherichia coli LF82] gi|284921599|emb|CBG34671.1| putative peptidoglycan-binding protein [Escherichia coli 042] gi|291470459|gb|EFF12943.1| conserved hypothetical protein [Escherichia coli B354] gi|312946278|gb|ADR27105.1| hypothetical protein NRG857_08405 [Escherichia coli O83:H1 str. NRG 857C] gi|331069434|gb|EGI40821.1| putative LysM domain protein [Escherichia coli TA280] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|170682137|ref|YP_001743576.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|300938999|ref|ZP_07153697.1| LysM domain protein [Escherichia coli MS 21-1] gi|170519855|gb|ACB18033.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|300456102|gb|EFK19595.1| LysM domain protein [Escherichia coli MS 21-1] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|15802090|ref|NP_288112.1| hypothetical protein Z2706 [Escherichia coli O157:H7 EDL933] gi|12515680|gb|AAG56665.1|AE005391_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 52/180 (28%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LXLPDAPRQGIIVNLAELRLYYYPPGENIXQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|15831639|ref|NP_310412.1| hypothetical protein ECs2385 [Escherichia coli O157:H7 str. Sakai] gi|168751911|ref|ZP_02776933.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4113] gi|168762261|ref|ZP_02787268.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4501] gi|168770437|ref|ZP_02795444.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|168775025|ref|ZP_02800032.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4196] gi|168782090|ref|ZP_02807097.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|168789812|ref|ZP_02814819.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC869] gi|188496112|ref|ZP_03003382.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|195937362|ref|ZP_03082744.1| hypothetical protein EscherichcoliO157_13082 [Escherichia coli O157:H7 str. EC4024] gi|208810266|ref|ZP_03252142.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|208816672|ref|ZP_03257792.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208820505|ref|ZP_03260825.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209399001|ref|YP_002270747.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|217328734|ref|ZP_03444815.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|254793295|ref|YP_003078132.1| hypothetical protein ECSP_2245 [Escherichia coli O157:H7 str. TW14359] gi|261227877|ref|ZP_05942158.1| hypothetical protein EscherichiacoliO157_25212 [Escherichia coli O157:H7 str. FRIK2000] gi|261258389|ref|ZP_05950922.1| hypothetical protein EscherichiacoliO157EcO_21562 [Escherichia coli O157:H7 str. FRIK966] gi|293414994|ref|ZP_06657637.1| ynhG protein [Escherichia coli B185] gi|300918048|ref|ZP_07134669.1| LysM domain protein [Escherichia coli MS 115-1] gi|13361852|dbj|BAB35808.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187769387|gb|EDU33231.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4196] gi|188014124|gb|EDU52246.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4113] gi|188491311|gb|EDU66414.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|189000273|gb|EDU69259.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|189360604|gb|EDU79023.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|189367460|gb|EDU85876.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4501] gi|189370588|gb|EDU89004.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC869] gi|208724782|gb|EDZ74489.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|208731015|gb|EDZ79704.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208740628|gb|EDZ88310.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209160401|gb|ACI37834.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|209769208|gb|ACI82916.1| hypothetical protein ECs2385 [Escherichia coli] gi|209769210|gb|ACI82917.1| hypothetical protein ECs2385 [Escherichia coli] gi|209769212|gb|ACI82918.1| hypothetical protein ECs2385 [Escherichia coli] gi|209769216|gb|ACI82920.1| hypothetical protein ECs2385 [Escherichia coli] gi|217318081|gb|EEC26508.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|254592695|gb|ACT72056.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|291432642|gb|EFF05621.1| ynhG protein [Escherichia coli B185] gi|300414739|gb|EFJ98049.1| LysM domain protein [Escherichia coli MS 115-1] gi|320188366|gb|EFW63028.1| L,D-transpeptidase YnhG [Escherichia coli O157:H7 str. EC1212] gi|320641893|gb|EFX11261.1| hypothetical protein ECO5101_07362 [Escherichia coli O157:H7 str. G5101] gi|320647349|gb|EFX16157.1| hypothetical protein ECO9389_09098 [Escherichia coli O157:H- str. 493-89] gi|320652643|gb|EFX20912.1| hypothetical protein ECO2687_03590 [Escherichia coli O157:H- str. H 2687] gi|320653028|gb|EFX21224.1| hypothetical protein ECO7815_12520 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658712|gb|EFX26389.1| hypothetical protein ECO5905_08454 [Escherichia coli O55:H7 str. USDA 5905] gi|320668702|gb|EFX35507.1| hypothetical protein ECOSU61_21203 [Escherichia coli O157:H7 str. LSU-61] gi|326342045|gb|EGD65826.1| L,D-transpeptidase YnhG [Escherichia coli O157:H7 str. 1044] gi|326343597|gb|EGD67359.1| L,D-transpeptidase YnhG [Escherichia coli O157:H7 str. 1125] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|331683185|ref|ZP_08383786.1| putative LysM domain protein [Escherichia coli H299] gi|331079400|gb|EGI50597.1| putative LysM domain protein [Escherichia coli H299] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|291282808|ref|YP_003499626.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O55:H7 str. CB9615] gi|290762681|gb|ADD56642.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O55:H7 str. CB9615] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|215486853|ref|YP_002329284.1| hypothetical protein E2348C_1763 [Escherichia coli O127:H6 str. E2348/69] gi|215264925|emb|CAS09311.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|26247928|ref|NP_753968.1| hypothetical protein c2073 [Escherichia coli CFT073] gi|227885903|ref|ZP_04003708.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300994863|ref|ZP_07180976.1| LysM domain protein [Escherichia coli MS 45-1] gi|301050991|ref|ZP_07197837.1| LysM domain protein [Escherichia coli MS 185-1] gi|312966831|ref|ZP_07781049.1| lysM domain protein [Escherichia coli 2362-75] gi|331647169|ref|ZP_08348263.1| putative LysM domain protein [Escherichia coli M605] gi|26108331|gb|AAN80533.1|AE016761_108 Hypothetical protein ynhG precursor [Escherichia coli CFT073] gi|227837082|gb|EEJ47548.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300297368|gb|EFJ53753.1| LysM domain protein [Escherichia coli MS 185-1] gi|300406203|gb|EFJ89741.1| LysM domain protein [Escherichia coli MS 45-1] gi|307553699|gb|ADN46474.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ABU 83972] gi|312288295|gb|EFR16197.1| lysM domain protein [Escherichia coli 2362-75] gi|315290525|gb|EFU49899.1| LysM domain protein [Escherichia coli MS 153-1] gi|320195426|gb|EFW70051.1| L,D-transpeptidase YnhG [Escherichia coli WV_060327] gi|323187102|gb|EFZ72418.1| lysM domain protein [Escherichia coli RN587/1] gi|330911485|gb|EGH39995.1| l,D-transpeptidase YnhG [Escherichia coli AA86] gi|331043952|gb|EGI16088.1| putative LysM domain protein [Escherichia coli M605] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|206580759|ref|YP_002238022.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae 342] gi|288935010|ref|YP_003439069.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] gi|206569817|gb|ACI11593.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae 342] gi|288889719|gb|ADC58037.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] Length = 328 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 42/181 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + ++VN+ L G+ + +G++ +TP + +RI + + NP W Sbjct: 93 DVPREGIVVNLAELRLYYFPPGENQVQVYPLGIGQLGLETPEMTTRIGQKIPNPTWTPTA 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I + + + G N + Sbjct: 153 GIRARSL-----------------------------------EKGVTLPAVVPAGPYNPL 177 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + N Y +H T P +SGC+R+ N D+ L T + Sbjct: 178 GRYALRLAYGNGEYLIHGTNAPDSVG---LRVSSGCMRM-NADDI-KALFNQVKTGTPVR 232 Query: 368 I 368 I Sbjct: 233 I 233 >gi|281178748|dbj|BAI55078.1| conserved hypothetical protein [Escherichia coli SE15] Length = 334 Score = 80.1 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 40/167 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 N + + N Y +H T P +SGC+R+ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPD 216 >gi|331653078|ref|ZP_08354083.1| putative LysM domain protein [Escherichia coli M718] gi|331049176|gb|EGI21248.1| putative LysM domain protein [Escherichia coli M718] Length = 334 Score = 79.7 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|284006311|emb|CBA71547.1| peptidoglycan-binding protein [Arsenophonus nasoniae] Length = 322 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 41/184 (22%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L G + + +G++ TP + + +++++ NP W +I ++ Sbjct: 115 IIVNLAELRLYYFPKGSNKVIVYPIGIGQLGANTPKMVTTVSQLIKNPTWTPTANIRKR- 173 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + G N M + Sbjct: 174 ----------------------------------YAADGVILPAVFPAGPDNPMGLYALR 199 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T F +R +SGC+R+R D++ I E +K Sbjct: 200 LSYGKGQYLIHGTNAN--FGIGLR-VSSGCIRLR-PEDIEALFYSIPVGTRVQVINEPIK 255 Query: 374 TRKT 377 K Sbjct: 256 YAKE 259 >gi|323968444|gb|EGB63850.1| ykud domain-containing protein [Escherichia coli M863] gi|323978185|gb|EGB73271.1| ykud domain-containing protein [Escherichia coli TW10509] gi|327252795|gb|EGE64449.1| lysM domain protein [Escherichia coli STEC_7v] Length = 334 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|283833341|ref|ZP_06353082.1| protein ErfK/srfK [Citrobacter youngae ATCC 29220] gi|291070982|gb|EFE09091.1| protein ErfK/srfK [Citrobacter youngae ATCC 29220] Length = 334 Score = 79.7 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 41/190 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL ++VN+ L G+ + + +G +TP++ +RI + + NP W Sbjct: 88 LLLPDAPREGIIVNLAELRLYYYPPGENIVQVFPIGIGLQGLETPVMETRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I ++ + G Sbjct: 148 TPTAGIRKRSL-----------------------------------ERGITLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + N Y +H T P +SGC+R+ N D+ + Sbjct: 173 NNPLGRFALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRM-NAPDIKALFAQVRTGT 228 Query: 364 SRYHIEEVVK 373 I E +K Sbjct: 229 PVRVINEPIK 238 >gi|260597669|ref|YP_003210240.1| hypothetical protein CTU_18770 [Cronobacter turicensis z3032] gi|260216846|emb|CBA30361.1| Uncharacterized protein ynhG [Cronobacter turicensis z3032] Length = 344 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 50/217 (23%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +E + +Q +G++ L N VD + L ++L Sbjct: 48 QNLEKIAEQYQ-------TGVL---LLLEANNTVDPYLPMPGSELTIPTQMLLPDTPREG 97 Query: 196 VLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L G+ + +G R+TP++ +RI + + NP W ++ + Sbjct: 98 IVVNLAELRLYYYPPGENRVAVYPIGIGLTGRETPVMTTRIIQKIPNPTWTPTAAMRAR- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + G N + + Sbjct: 157 ----------------------------------SQAHGVTLPAVIPAGPNNPLGRFALR 182 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 Y +H T +SGC+R+R Sbjct: 183 LQQGGGEYLIHGTNARSSIG---LRASSGCIRMRAAD 216 >gi|209525406|ref|ZP_03273946.1| ErfK/YbiS/YcfS/YnhG family protein [Arthrospira maxima CS-328] gi|209494086|gb|EDZ94401.1| ErfK/YbiS/YcfS/YnhG family protein [Arthrospira maxima CS-328] Length = 208 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 52/199 (26%), Gaps = 59/199 (29%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLM------RIKKLL-EQKMGLRYVLVNIPAASLEAVENG 211 TL A + Q +N K L ++ +++ + + Sbjct: 40 EPTLSASGSAPRIYPYQSLLNPDVPPLDDPSKFLPLGEQQAQLKLVLRLGERRVYVYRGE 99 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 V VG+ +TP ++ + NP W P Sbjct: 100 SQIASYPVAVGKPGWETPTGTFQVTEKVENPQWQNP------------------------ 135 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS--RNNTYMHDTPEP 329 W + G +A+ I F+ ++ H TP Sbjct: 136 ----------------WTGE-------VRPAGPNSALGLRWIGFWHDGKDAIGFHGTPTV 172 Query: 330 ILFNNVVRFETSGCVRVRN 348 + GCVR+RN Sbjct: 173 NSIGQ---AASHGCVRMRN 188 >gi|170768916|ref|ZP_02903369.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] gi|170122464|gb|EDS91395.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] Length = 334 Score = 79.7 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|94266656|ref|ZP_01290333.1| ErfK/YbiS/YcfS/YnhG [delta proteobacterium MLMS-1] gi|93452703|gb|EAT03254.1| ErfK/YbiS/YcfS/YnhG [delta proteobacterium MLMS-1] Length = 328 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 49/184 (26%) Query: 184 KKLLEQKM-GLRYVLVNIPAASLEAVE---NGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + L + +++N+ L + L V +G +TP RI + Sbjct: 118 RVLPDFTPTAEPAIVINLAEKRLYYFHRRGDEAAVLTFPVGIGADYGETPTGEYRITNKL 177 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W +P SI Q+ P Sbjct: 178 VEPSWTVPPSIRQRR---------------------------------------PELPPI 198 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLL 357 PG N M S ++ + Y+H T P R T GC+R+ +I L + Sbjct: 199 VPPGPDNPMGSHALQLSGG-SYYIHGTNRPWSIG---RRATQGCLRLYPEDIRVLFRLVE 254 Query: 358 KDTP 361 + TP Sbjct: 255 RQTP 258 >gi|161503692|ref|YP_001570804.1| hypothetical protein SARI_01776 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865039|gb|ABX21662.1| hypothetical protein SARI_01776 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 319 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 43/189 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D++ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-GDIETLFRQVTPGTKV 238 Query: 366 YHIEEVVKT 374 I +KT Sbjct: 239 NIINTPIKT 247 >gi|304439584|ref|ZP_07399489.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371963|gb|EFM25564.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 257 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 61/227 (26%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 S A +K FQ + +G+VD+ T + L +R+ Sbjct: 27 YTRPNNFSNLKGAARIEGIKRFQAELNVPTTGVVDAMTKKV-----------LHTENIRV 75 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + ++ ++ VN+ L + +V + V VG TP + +I NP Sbjct: 76 RDYVKPPTNGNWITVNLINRILTMYKGNEVLYKFPVAVGASATPTPAVKGKIMNKHVNPA 135 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + Sbjct: 136 W------------------------GGM---------------------GGKYKATSPDD 150 Query: 304 KINAMASTKIEFYSRN--NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N + + +H T +P + ++GC+R+ N Sbjct: 151 PYNPLGERWMGLNLGKYSGYGIHGTIKPHQIGM---YVSNGCIRMFN 194 >gi|294787984|ref|ZP_06753228.1| ErfK/YbiS/YcfS/YnhG family protein [Simonsiella muelleri ATCC 29453] gi|294484277|gb|EFG31960.1| ErfK/YbiS/YcfS/YnhG family protein [Simonsiella muelleri ATCC 29453] Length = 378 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 64/233 (27%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 YVL+NIP L NG + V VG+ QT + +I ++P W IP+SI + Sbjct: 18 YYVLINIPQQRLFLFNNGALEKVYPVAVGKAMTQTNLGEHKIGGKAYDPTWHIPKSIQAE 77 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 V P +F + ++ Sbjct: 78 MKTPQ-------------------------TSVPPGPNNPLGPVFVRLGNPKLSLG---- 108 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEV 371 +H T P + GCVR+ +D Sbjct: 109 ---------IHGTNAPNSV---PGVRSHGCVRMKSEQALDFA----------------RT 140 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF----RDDIYGLDNVHVGII 420 + T V Y A D Q D Y N+++ ++ Sbjct: 141 ITTGSDALVG----------YEMAALNVDGKNQLWLAAYQDPYNKKNLNIEML 183 >gi|296102710|ref|YP_003612856.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057169|gb|ADF61907.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 337 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 50/218 (22%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D +++ + F L ++T+ +N I +L Sbjct: 48 DTKLQTIARRFNTAAQLILE---TNNTIAPVNPAPGTVITIPSQ-------MLLPDTPRE 97 Query: 195 YVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + + +G++ +TP+ +R+++ + NP W I + Sbjct: 98 GIVVNLAELRLYYYPPGGNIVQVFPLGIGQLGLETPVTTTRVSQKIPNPTWTPTPGIRAR 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 158 SL-----------------------------------EQGIKLPPVVPAGPNNPLGRFAL 182 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 N Y +H T P +SGC+R+ Sbjct: 183 RLGVGNGEYLIHGTSAPDSVG---LRVSSGCMRMNAPD 217 >gi|110641799|ref|YP_669529.1| hypothetical protein ECP_1625 [Escherichia coli 536] gi|191171695|ref|ZP_03033242.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|300987772|ref|ZP_07178350.1| LysM domain protein [Escherichia coli MS 200-1] gi|110343391|gb|ABG69628.1| hypothetical protein YnhG precursor [Escherichia coli 536] gi|190908025|gb|EDV67617.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|300306060|gb|EFJ60580.1| LysM domain protein [Escherichia coli MS 200-1] gi|324011457|gb|EGB80676.1| LysM domain protein [Escherichia coli MS 60-1] Length = 334 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQIYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|320086345|emb|CBY96118.1| Uncharacterized protein ycfS Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 321 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TATIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|270160068|ref|ZP_06188724.1| ErfK/YbiS/YcfS/YnhG family protein [Legionella longbeachae D-4968] gi|289165151|ref|YP_003455289.1| hypothetical protein LLO_1815 [Legionella longbeachae NSW150] gi|269988407|gb|EEZ94662.1| ErfK/YbiS/YcfS/YnhG family protein [Legionella longbeachae D-4968] gi|288858324|emb|CBJ12192.1| hypothetical protein LLO_1815 [Legionella longbeachae NSW150] Length = 295 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 43/187 (22%) Query: 192 GLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + +++N+ L EN V L + +GR +TP+ +++ + NP W P Sbjct: 96 PRKGIVINLAEYRLYYFPENENVVLTFPIGIGRKGWKTPLGVTKVVAKVANPKWR-PTKN 154 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++++ G N + Sbjct: 155 LREE----------------------------------AEKNGDFLPEELPSGPYNPLGQ 180 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-IE 369 + +H T R ++GC+R+ D+ L + P ++ I Sbjct: 181 YTLRLGWP-TFLIHGTNRQD--GIGAR-VSAGCIRMY-PDDI-ELLFRSVPVGTQVRIIN 234 Query: 370 EVVKTRK 376 + VKT K Sbjct: 235 QPVKTGK 241 >gi|168467173|ref|ZP_02701015.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630351|gb|EDX48977.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 321 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|56413799|ref|YP_150874.1| hypothetical protein SPA1635 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362722|ref|YP_002142359.1| hypothetical protein SSPA1520 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128056|gb|AAV77562.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094199|emb|CAR59703.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 321 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|213857814|ref|ZP_03384785.1| hypothetical protein SentesT_22135 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 263 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TTNIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 222 >gi|220916767|ref|YP_002492071.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954621|gb|ACL65005.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 285 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 46/180 (25%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 +L ++VN+ L + G + V +G+ +TP+ + P Sbjct: 77 WILPPSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPT 136 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P S+ + D P R PG Sbjct: 137 WYPPASMRRDD---------------------------------------PTLPDRVPPG 157 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 N + + + + + +H T EP F R + GCVR+ +I L + TP Sbjct: 158 PDNPLGTHALRLSAG-SILIHGTDEP--FGIG-RKFSHGCVRLYPEDIPRLFEVVPLKTP 213 >gi|16760090|ref|NP_455707.1| hypothetical protein STY1255 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142139|ref|NP_805481.1| hypothetical protein t1705 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161680|ref|ZP_03347390.1| hypothetical protein Salmoneentericaenterica_17412 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425038|ref|ZP_03357788.1| hypothetical protein SentesTyphi_04655 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649270|ref|ZP_03379323.1| hypothetical protein SentesTy_19505 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829624|ref|ZP_06547179.1| hypothetical protein Salmonellentericaenterica_23664 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25323528|pir||AH0644 probable exported protein STY1255 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502384|emb|CAD08339.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137768|gb|AAO69330.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 263 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TTNIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 222 >gi|168239119|ref|ZP_02664177.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734349|ref|YP_002114220.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930801|ref|ZP_03221674.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194709851|gb|ACF89072.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288095|gb|EDY27482.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320260|gb|EDZ05464.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616591|gb|EFY13500.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619894|gb|EFY16768.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622462|gb|EFY19307.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629420|gb|EFY26197.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633908|gb|EFY30646.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636839|gb|EFY33542.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641361|gb|EFY38000.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645126|gb|EFY41655.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652290|gb|EFY48646.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655641|gb|EFY51943.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660946|gb|EFY57176.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665468|gb|EFY61656.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667555|gb|EFY63716.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673651|gb|EFY69753.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677577|gb|EFY73641.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679758|gb|EFY75797.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687231|gb|EFY83203.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194017|gb|EFZ79218.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199426|gb|EFZ84519.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202442|gb|EFZ87484.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208845|gb|EFZ93783.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210653|gb|EFZ95532.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217819|gb|EGA02534.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323229622|gb|EGA13745.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232847|gb|EGA16943.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240117|gb|EGA24161.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242896|gb|EGA26917.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246811|gb|EGA30781.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254289|gb|EGA38106.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323261592|gb|EGA45169.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266984|gb|EGA50469.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272088|gb|EGA55502.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 321 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|261339562|ref|ZP_05967420.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cancerogenus ATCC 35316] gi|288318379|gb|EFC57317.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cancerogenus ATCC 35316] Length = 337 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 74/259 (28%), Gaps = 57/259 (22%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D ++ + F L ++T+ +N I +L Sbjct: 48 DNKLQDIARRFNTAAQLILE---TNNTIAPVNPAPGTVITIPSQ-------MLLPDTPRE 97 Query: 195 YVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G+ + + +G++ +TP+ +R+++ + NP W I + Sbjct: 98 GIVVNLAELRLYYFPPGENRVEVYPLGIGQLGLETPVSTTRVSQKIPNPTWTPTAGIRAR 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 158 SLA-----------------------------------QGIKLPPVVPAGPNNPLGRFAL 182 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE-- 370 N Y +H T P +SGC+R+ L + +R I Sbjct: 183 RLGIGNGEYLIHGTSAPNSVG---LRVSSGCMRMNAPD--IKALFEQVRVGTRVQIINEP 237 Query: 371 ---VVKTRKTTPVKLATEV 386 ++ +++ + Sbjct: 238 VKFAMEPDGRRYIEVHRPL 256 >gi|168244286|ref|ZP_02669218.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444973|ref|YP_002040469.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450628|ref|YP_002045214.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194403636|gb|ACF63858.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408932|gb|ACF69151.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336782|gb|EDZ23546.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 321 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|168264276|ref|ZP_02686249.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347257|gb|EDZ33888.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 321 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|326202623|ref|ZP_08192491.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium papyrosolvens DSM 2782] gi|325987207|gb|EGD48035.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium papyrosolvens DSM 2782] Length = 213 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 71/247 (28%), Gaps = 60/247 (24%) Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G + + +A+ LFQ H + +G D++T + R Sbjct: 6 QLGYYKKAYKNDEKL--NIRNALLLFQSNHNMSVTGTYDTATKNMLVQ------RLSSNK 57 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + +++ R++ VN L E KV + V VG Sbjct: 58 FAYLDNVIKAPTKGRWIAVNKTTRVLTLYEGKKVLKKYAVAVG----------------- 100 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 +P L + ++++ K + DW Sbjct: 101 ----------------------NPATLTKSGKYVVNC--KLIDP---DWGG--GGFAKPV 131 Query: 300 QDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + N + + + + +H T + + GC+R+ N + +L + Sbjct: 132 RGGTPQNPLGTRWMGINRTDGSYGIHGTNSFYSIGK---YISHGCMRMSNYCVEELYPLV 188 Query: 357 LKDTPTW 363 P W Sbjct: 189 PMKAPVW 195 >gi|82543952|ref|YP_407899.1| hypothetical protein SBO_1452 [Shigella boydii Sb227] gi|81245363|gb|ABB66071.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 334 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLLPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + F N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRFAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|62179735|ref|YP_216152.1| hypothetical protein SC1165 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614556|ref|YP_001588521.1| hypothetical protein SPAB_02305 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553626|ref|ZP_02347374.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|62127368|gb|AAX65071.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363920|gb|ABX67688.1| hypothetical protein SPAB_02305 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205321976|gb|EDZ09815.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|322714205|gb|EFZ05776.1| Peptidoglycan-binding LysM [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 321 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|16764570|ref|NP_460185.1| periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992001|ref|ZP_02573100.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168822318|ref|ZP_02834318.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197251546|ref|YP_002146827.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261709|ref|ZP_03161783.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|238910965|ref|ZP_04654802.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16419733|gb|AAL20144.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197215249|gb|ACH52646.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197239964|gb|EDY22584.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329693|gb|EDZ16457.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341233|gb|EDZ27997.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261246427|emb|CBG24236.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992991|gb|ACY87876.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157756|emb|CBW17248.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912203|dbj|BAJ36177.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223831|gb|EFX48894.1| L,D-transpeptidase YcfS [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129484|gb|ADX16914.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988106|gb|AEF07089.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 321 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|168233093|ref|ZP_02658151.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472579|ref|ZP_03078563.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|198243629|ref|YP_002215923.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353051|ref|YP_002226852.1| hypothetical protein SG1906 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857278|ref|YP_002243929.1| hypothetical protein SEN1834 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194458943|gb|EDX47782.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197938145|gb|ACH75478.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272832|emb|CAR37758.1| putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205332648|gb|EDZ19412.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|206709081|emb|CAR33414.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326623671|gb|EGE30016.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628130|gb|EGE34473.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 321 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|161503528|ref|YP_001570640.1| hypothetical protein SARI_01604 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864875|gb|ABX21498.1| hypothetical protein SARI_01604 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 333 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVVVNLAELRLYYYPAGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFTQVKTGTP 229 >gi|91210891|ref|YP_540877.1| hypothetical protein UTI89_C1870 [Escherichia coli UTI89] gi|91072465|gb|ABE07346.1| hypothetical protein YnhG precursor [Escherichia coli UTI89] gi|307626836|gb|ADN71140.1| hypothetical protein UM146_08765 [Escherichia coli UM146] Length = 334 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQRLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|213582012|ref|ZP_03363838.1| hypothetical protein SentesTyph_12759 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 249 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TTNIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 222 >gi|86158711|ref|YP_465496.1| ErfK/YbiS/YcfS/YnhG like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775222|gb|ABC82059.1| ErfK/YbiS/YcfS/YnhG like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 285 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 46/180 (25%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 +L ++VN+ L + G + V +G+ +TP+ + P Sbjct: 77 WILPPSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPT 136 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P S+ + D P R PG Sbjct: 137 WYPPASMRRDD---------------------------------------PTLPDRVPPG 157 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 N + + + + + +H T EP F R + GCVR+ +I L + TP Sbjct: 158 PDNPLGTHALRLSAG-SILIHGTDEP--FGIG-RKFSHGCVRLYPEDIPRLFEVVPLKTP 213 >gi|120554152|ref|YP_958503.1| hypothetical protein Maqu_1226 [Marinobacter aquaeolei VT8] gi|120324001|gb|ABM18316.1| conserved hypothetical protein [Marinobacter aquaeolei VT8] Length = 87 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 15/86 (17%) Query: 78 TEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLD---------- 125 +A Y+ + +GGWP+LP + L G+ V LR+RL+++G+L Sbjct: 1 MRAGLAQYRHLERQGGWPQLPNRQQSLRPGDVHEEVALLRKRLLVTGELAITHVDELAGQ 60 Query: 126 ---PSKGLSVAFDAYVESAVKLFQMR 148 S + +D ++ AV+ FQ Sbjct: 61 SIVSSHPETYEYDEHLVDAVRRFQQH 86 >gi|320184429|gb|EFW59237.1| L,D-transpeptidase YnhG [Shigella flexneri CDC 796-83] gi|332096091|gb|EGJ01096.1| lysM domain protein [Shigella boydii 3594-74] Length = 334 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLLPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + F N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRFAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|328884589|emb|CCA57828.1| putative lipoprotein [Streptomyces venezuelae ATCC 10712] Length = 339 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE- 163 G+ + V+ L+ RL G D + + ++VK FQ + GL +G VD++T E Sbjct: 137 GDETEQVRELQARLRQLGHFDRAPT--GFYGTMTAASVKAFQKKQGLPRTGSVDATTWER 194 Query: 164 ---AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 A P ++ N ++ + + R + ++ + +L + +GKV V Sbjct: 195 LLGASRKPTADELKPSTTN--KLDTPDARCLTGRVLCISKESRTLAWMIDGKVVSSMDVR 252 Query: 221 VGRVDRQTPILHSRINRIM 239 G + T + R + Sbjct: 253 FGSENTPTREGTFTVERKV 271 >gi|200389840|ref|ZP_03216451.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602285|gb|EDZ00831.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 321 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|323228042|gb|EGA12183.1| hypothetical protein SEEM0055_19941 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 248 Score = 78.9 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|323222137|gb|EGA06522.1| hypothetical protein SEEM0047_13609 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 247 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|170076716|ref|YP_001733354.1| peptidoglycan binding protein; putative penicillin-resistant DD-carboxypeptidase [Synechococcus sp. PCC 7002] gi|169884385|gb|ACA98098.1| peptidoglycan binding protein; putative penicillin-resistant DD-carboxypeptidase [Synechococcus sp. PCC 7002] Length = 230 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 5/127 (3%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP-ELP 98 I+ + + ++ A ++ P + E A + + + P LP Sbjct: 106 ISAANLPVAEEQAPTPTASSPTTAQNETPATPAQEATDAEAAPSSSTNQTATSTDPDTLP 165 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G SV+ L+ RL G + + F AV Q LD G+V Sbjct: 166 --LLKEGMEGDSVKLLQTRLQALGYY--TGRIDGIFGPNTRIAVIAAQTALKLDGDGIVG 221 Query: 159 SSTLEAM 165 + T + Sbjct: 222 AQTWRKL 228 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L +G++ VQ L+ L + G +D AV FQ + +G++ Sbjct: 38 PRPELRIGSTGTVVQELQTTLRLLGYYSGETT--GTYDEATVIAVYQFQKAAQIPQTGVM 95 Query: 158 DSSTLE 163 D +T E Sbjct: 96 DRTTWE 101 >gi|330828414|ref|YP_004391366.1| peptidoglycan-binding LysM [Aeromonas veronii B565] gi|328803550|gb|AEB48749.1| Peptidoglycan-binding LysM [Aeromonas veronii B565] Length = 308 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 69/239 (28%), Gaps = 54/239 (22%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 +E+ FQ+ GL + N D + Q L+ ++L+ Sbjct: 51 GQPLEAIAAKFQL--GLTN--------MTEANPDADPLLVQTGEKLVIPQQLILPDAPRE 100 Query: 195 YVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQ 252 +++N+ L GK V + +G++ TP + + R P W + Sbjct: 101 GIVLNVAEMRLYYYPKGKKVVEVLPIGIGQLGTDTPENWVTSVQRKKAGPTWTPTAKMHA 160 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 + + + G N M Sbjct: 161 E-----------------------------------YAARGESLPAVWPAGPDNPMGLFA 185 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 + H T F +R + GCVR+RN D+ +L K P +R Sbjct: 186 LYIGKMYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDIA-YLFKQVPVGTRVQFVNQ 237 >gi|213022863|ref|ZP_03337310.1| hypothetical protein Salmonelentericaenterica_09678 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 252 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TTNIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 222 >gi|237731095|ref|ZP_04561576.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906634|gb|EEH92552.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 323 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + G + +G++ D TP + + I+ NP W Sbjct: 100 DAPREGIVINLAELRLYYYQPGTNSVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 159 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 160 TANIRAR-----------------------------------YKANGIDLPAVVPAGPDN 184 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 185 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 224 >gi|283784906|ref|YP_003364771.1| peptidoglycan-binding protein [Citrobacter rodentium ICC168] gi|282948360|emb|CBG87946.1| putative peptidoglycan-binding protein [Citrobacter rodentium ICC168] Length = 320 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 42/165 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 + +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 97 DVPREGIVINLAELRLYYYPPGKDSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 M I + Y +H T F +R +SGC+R+R+ Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRDAD 223 >gi|320197861|gb|EFW72469.1| L,D-transpeptidase YnhG [Escherichia coli EC4100B] Length = 334 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSVPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|308270260|emb|CBX26872.1| hypothetical protein N47_A09010 [uncultured Desulfobacterium sp.] Length = 440 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 49/220 (22%) Query: 176 LQVNLMRIKKLLEQKMGL---RYVLVNIPAASLEAVENGK---VGLRSTVIVGRVDRQTP 229 + N RI L + + +++N+ A L + L V +G +R TP Sbjct: 103 VPENGERIMLPLCFILPDAPRKGIVINLAAMRLFQFKGNSNFLTVLTYPVGIGTSERPTP 162 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + + R M P W +P SI + + Sbjct: 163 MGQMYVYRKMARPTWHVPASIAED-----------------------------------H 187 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + PG N + + ++ +H T +P T+GC+R+ Sbjct: 188 RKKGDPLPSFILPGPENPLGEYALYLS-KSGYLIHGTNKPSSIG---LKATNGCIRLY-P 242 Query: 350 IDLDVWLLKDTPTWSRYHI--EEVVKTRKTTPVKLATEVP 387 D+ L K TP + I + + ++ V L VP Sbjct: 243 EDI-KMLFKSTPVKTPVSIVNQPYLIGQRNGLVYLEAHVP 281 >gi|283785092|ref|YP_003364957.1| peptidoglycan-binding protein [Citrobacter rodentium ICC168] gi|282948546|emb|CBG88136.1| putative peptidoglycan-binding protein [Citrobacter rodentium ICC168] Length = 329 Score = 78.5 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ + + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYFPPGENIVQVYPIGIGLEGLETPVMETRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I ++ + G N + Sbjct: 152 GIRKRSL-----------------------------------ERGVTLPAVVPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T +P +SGC+R+ L + TP Sbjct: 177 GRFALRLAYGNGEYLIHGTSQPDSVG---LRVSSGCIRMNAPDIKALFASVRTGTP 229 >gi|318060180|ref|ZP_07978903.1| hypothetical protein SSA3_19714 [Streptomyces sp. SA3_actG] Length = 235 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 4/146 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + V+ L+ RL G F A+ FQ GL SG++D++T Sbjct: 32 RKGQRTSDVRALQARLWSLGFFRQQPT--GFFGDVTAQALAAFQRDRGLGASGVLDAATW 89 Query: 163 EAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + P + + + + + R + V+ + +L + +G+V V Sbjct: 90 ARLRAAGPAPTKAALYPETTLPPTRPDPRCLTGRALCVSKKSRTLAWMVDGRVVSVMDVR 149 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVI 246 G T ++ + I Sbjct: 150 FGSAYTPTRDGTFKVYWKSRDHVSTI 175 >gi|209525179|ref|ZP_03273722.1| ErfK/YbiS/YcfS/YnhG family protein [Arthrospira maxima CS-328] gi|209494364|gb|EDZ94676.1| ErfK/YbiS/YcfS/YnhG family protein [Arthrospira maxima CS-328] Length = 178 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 52/170 (30%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L+ +++ + + + N +V + +GR +TPI H ++ +++ +P W Sbjct: 44 WLQYSPSQLELVIRLGERRVYVMNNARVVTSYPIAIGRNGWETPIGHYQVIQMIEDPTWE 103 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P + D++ PG+ Sbjct: 104 HP---LNGDIIP--------------------------------------------PGRD 116 Query: 306 NAMASTKIEFY--SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 N + S I F+ N H TP + GCVR+ N L Sbjct: 117 NPLGSHWIGFWTDGTNYIGFHGTPNEETVGQ---AVSHGCVRMFNRDVLA 163 >gi|289809529|ref|ZP_06540158.1| hypothetical protein Salmonellaentericaenterica_35902 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 182 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 34 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 93 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 94 TTNIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 118 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 119 PMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 158 >gi|200389916|ref|ZP_03216527.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602361|gb|EDZ00907.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 333 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|62179965|ref|YP_216382.1| LysM domain-containing protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127598|gb|AAX65301.1| putative LysM domain [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714432|gb|EFZ06003.1| LysM domain-containing protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 333 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|159040579|ref|YP_001539832.1| cell wall hydrolase/autolysin [Salinispora arenicola CNS-205] gi|157919414|gb|ABW00842.1| cell wall hydrolase/autolysin [Salinispora arenicola CNS-205] Length = 387 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 51/140 (36%), Gaps = 11/140 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G+ +V +R L L PS S FDA+ E AV+ FQ GL G V + Sbjct: 2 RPIRPGDRGPAVTEIRRVLAGLDLLVPSAPDSDEFDAHTERAVRAFQQSRGLSVDGRVGT 61 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T A++ R R L + E G + +E G R+ Sbjct: 62 ETWRALD---AARWRLGARTL--YHSVPEPLTGEDIRSLQE-----RLLEMGYDVGRADA 111 Query: 220 IVG-RVDRQTPILHSRINRI 238 I G R R + I Sbjct: 112 IYGVRTARALAQFQREVGLI 131 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 18/104 (17%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGD 123 +A + + G W L LG ++ L+ERL+ G Sbjct: 45 RAFQQSRGLSVDGRVGTETWRALDAARWRLGARTLYHSVPEPLTGEDIRSLQERLLEMGY 104 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + A+ FQ GL P G TL ++ Sbjct: 105 DVGRA--DAIYGVRTARALAQFQREVGLIPDGTCGPHTLNSLRR 146 >gi|254423217|ref|ZP_05036935.1| ErfK/YbiS/YcfS/YnhG family [Synechococcus sp. PCC 7335] gi|196190706|gb|EDX85670.1| ErfK/YbiS/YcfS/YnhG family [Synechococcus sp. PCC 7335] Length = 202 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 45/149 (30%), Gaps = 52/149 (34%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 LE GK +R V VG+ QTPI + ++ P W P + ++D+ Sbjct: 84 GRYLEVESLGKPTIRYEVAVGQSAWQTPIGSFEVTSMIEQPTWQHPLT--KEDI------ 135 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRN 319 PG N + I F+ + Sbjct: 136 ---------------------------------------PPGPDNPLGDRWIGFWTDGKA 156 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 H T + L + GCVR+RN Sbjct: 157 QIGFHGTNQEELIGQ---AVSHGCVRMRN 182 >gi|284050198|ref|ZP_06380408.1| ErfK/YbiS/YcfS/YnhG [Arthrospira platensis str. Paraca] Length = 163 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 52/170 (30%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L+ +++ + + N ++ + +GR +TPI H ++ +++ +P W Sbjct: 29 WLQYSPSQLELVIRLGERRVYVYNNTQLVTSYPIAIGRNGWETPIGHYQVIQMIEDPIWE 88 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P + D++ PG Sbjct: 89 HP---LNGDIIP--------------------------------------------PGGD 101 Query: 306 NAMASTKIEFY--SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 N + S I F+ N H TP + GCVR+ N L Sbjct: 102 NPLGSHWIGFWTDGTNYIGFHGTPNEETVGQ---AVSHGCVRMFNRDVLA 148 >gi|291569009|dbj|BAI91281.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 153 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 52/170 (30%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L+ +++ + + N ++ + +GR +TPI H ++ +++ +P W Sbjct: 19 WLQYSPSQLELVIRLGERRVYVYNNTQLVTSYPIAIGRNGWETPIGHYQVIQMIEDPIWE 78 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P + D++ PG Sbjct: 79 HP---LNGDIIP--------------------------------------------PGGD 91 Query: 306 NAMASTKIEFY--SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 N + S I F+ N H TP + GCVR+ N L Sbjct: 92 NPLGSHWIGFWTDGTNYIGFHGTPNEETVGQ---AVSHGCVRMFNRDVLA 138 >gi|331646371|ref|ZP_08347474.1| putative LysM domain protein [Escherichia coli M605] gi|331045123|gb|EGI17250.1| putative LysM domain protein [Escherichia coli M605] Length = 377 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 155 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 214 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 215 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 239 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 240 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 295 Query: 366 YHIEEVVK 373 I +K Sbjct: 296 NIINTPIK 303 >gi|312971249|ref|ZP_07785427.1| lysM domain protein [Escherichia coli 1827-70] gi|310336451|gb|EFQ01637.1| lysM domain protein [Escherichia coli 1827-70] Length = 377 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 155 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 214 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 215 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 239 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 240 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 295 Query: 366 YHIEEVVK 373 I +K Sbjct: 296 NIINTPIK 303 >gi|291085508|ref|ZP_06571091.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Citrobacter youngae ATCC 29220] gi|291071175|gb|EFE09284.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Citrobacter youngae ATCC 29220] Length = 323 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + G + +G++ D TP + + ++ NP W Sbjct: 100 DAPREGIVINLAELRLYYYQPGTNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 159 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 160 TANIRAR-----------------------------------YKANGIDLPAVVPAGPDN 184 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 185 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 224 >gi|320664513|gb|EFX31664.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. LSU-61] Length = 319 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|320175139|gb|EFW50250.1| L,D-transpeptidase YnhG [Shigella dysenteriae CDC 74-1112] Length = 334 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLLPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + F N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRFAHGNGEYLIHGTSAPDCVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|168240884|ref|ZP_02665816.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450901|ref|YP_002045380.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409205|gb|ACF69424.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339516|gb|EDZ26280.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 333 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|315287491|gb|EFU46902.1| LysM domain protein [Escherichia coli MS 110-3] Length = 307 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|167551660|ref|ZP_02345414.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233565|ref|ZP_02658623.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471756|ref|ZP_03077740.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248056|ref|YP_002146664.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263600|ref|ZP_03163674.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|238910809|ref|ZP_04654646.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194458120|gb|EDX46959.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211759|gb|ACH49156.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241855|gb|EDY24475.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205323528|gb|EDZ11367.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332330|gb|EDZ19094.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 333 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|293409479|ref|ZP_06653055.1| ycfS protein [Escherichia coli B354] gi|291469947|gb|EFF12431.1| ycfS protein [Escherichia coli B354] Length = 321 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 99 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 158 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 159 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 183 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 184 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 239 Query: 366 YHIEEVVK 373 I +K Sbjct: 240 NIINTPIK 247 >gi|168239256|ref|ZP_02664314.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168822241|ref|ZP_02834241.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194738000|ref|YP_002114390.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927803|ref|ZP_03219004.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194713502|gb|ACF92723.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287980|gb|EDY27367.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323145|gb|EDZ08341.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205341306|gb|EDZ28070.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086144|emb|CBY95918.1| Uncharacterized protein ynhG Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616759|gb|EFY13668.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619981|gb|EFY16854.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622292|gb|EFY19137.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627815|gb|EFY24605.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633086|gb|EFY29829.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636668|gb|EFY33371.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641307|gb|EFY37948.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644925|gb|EFY41458.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650236|gb|EFY46650.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655811|gb|EFY52113.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660137|gb|EFY56376.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665297|gb|EFY61485.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669554|gb|EFY65702.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673480|gb|EFY69582.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677408|gb|EFY73472.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679929|gb|EFY75968.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687401|gb|EFY83373.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192354|gb|EFZ77585.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198627|gb|EFZ83728.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203108|gb|EFZ88139.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208673|gb|EFZ93611.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213812|gb|EFZ98590.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217650|gb|EGA02365.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218998|gb|EGA03508.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227187|gb|EGA11360.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229452|gb|EGA13575.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232675|gb|EGA16771.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240287|gb|EGA24331.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242725|gb|EGA26746.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245936|gb|EGA29924.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252513|gb|EGA36357.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255061|gb|EGA38848.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323267154|gb|EGA50639.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271522|gb|EGA54943.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 333 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|16764725|ref|NP_460340.1| hypothetical protein STM1375 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161614211|ref|YP_001588176.1| hypothetical protein SPAB_01954 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994396|ref|ZP_02575488.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168263798|ref|ZP_02685771.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463218|ref|ZP_02697149.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442385|ref|YP_002040630.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198245212|ref|YP_002215752.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207857119|ref|YP_002243770.1| hypothetical protein SEN1670 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16419895|gb|AAL20299.1| putative LysM domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161363575|gb|ABX67343.1| hypothetical protein SPAB_01954 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401048|gb|ACF61270.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195634222|gb|EDX52574.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197939728|gb|ACH77061.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205327768|gb|EDZ14532.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347648|gb|EDZ34279.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708922|emb|CAR33252.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246583|emb|CBG24393.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993262|gb|ACY88147.1| hypothetical protein STM14_1669 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157910|emb|CBW17405.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912360|dbj|BAJ36334.1| hypothetical protein STMDT12_C13910 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224001|gb|EFX49064.1| L,D-transpeptidase YnhG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129645|gb|ADX17075.1| putative L,D-transpeptidase YnhG [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623500|gb|EGE29845.1| Peptidoglycan-binding LysM [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988262|gb|AEF07245.1| hypothetical protein STMUK_1341 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 333 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|288556870|ref|YP_003428805.1| peptidoglycan binding domain-containing YocH-like protein [Bacillus pseudofirmus OF4] gi|288548030|gb|ADC51913.1| peptidoglycan binding domain-containing putative YocH-like protein [Bacillus pseudofirmus OF4] Length = 356 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 14/152 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 F + L +H V E + + + A +S T Sbjct: 25 FASPAISEASDLGSNLLHKGVDGESVQVVQELLHEKGLLDEAAITGTFSKETFDAVS--T 82 Query: 75 IAQTEKAIAFYQDILSRG--GWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + +++ G G + + L G+ V V+ L+ +L+ G + +K Sbjct: 83 YQEKH-------NLVVDGIAGPQTVGAMKVLEKGDEGVLVEDLQHQLVDLGFYEGNK--D 133 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + ++AVK FQ G+ G+ T Sbjct: 134 GLYGPLTQAAVKGFQKAQGISVDGIAGPETYS 165 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G SVQ ++E L G LD ++ F AV +Q +H L G+ T Sbjct: 41 LHKGVDGESVQVVQELLHEKGLLD-EAAITGTFSKETFDAVSTYQEKHNLVVDGIAGPQT 99 Query: 162 LEAMNV 167 + AM V Sbjct: 100 VGAMKV 105 >gi|158334425|ref|YP_001515597.1| hypothetical protein AM1_1246 [Acaryochloris marina MBIC11017] gi|158304666|gb|ABW26283.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 180 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 46/179 (25%), Gaps = 53/179 (29%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 L + + +N+ + ++ + V +GR TP + NP W+ Sbjct: 46 LPPAVDPMRLELNLSKRRVTVYQHDQAVKSYPVAIGRAGWATPAGDFEVKTKYRNPPWLH 105 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + N Sbjct: 106 PFK--------------------GYVIPGGD--------------------------PEN 119 Query: 307 AMASTKIEFY--SRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + F+ N H TP R + GCVR+ +I ++ + TP Sbjct: 120 PLGRRWMGFWTDGNNWIGFHGTPNRDSVG---RSASHGCVRMYDEDIEEMYELVAVGTP 175 >gi|157159394|ref|YP_001462346.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] gi|157081424|gb|ABV21132.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] Length = 320 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|146311284|ref|YP_001176358.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] gi|145318160|gb|ABP60307.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] Length = 317 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 96 DAPREGLVINLAELRLYYYPPGKKEVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 155 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 156 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 180 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 181 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 220 >gi|325132859|gb|EGC55538.1| ErfK/YbiS/YcfS/YnhG family [Neisseria meningitidis M6190] Length = 278 Score = 78.1 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 73/199 (36%) Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T + +I +NP W IP+SI ++ Sbjct: 1 TNLGEHKIGAKAYNPVWYIPKSIQKER--------------------------------- 27 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRV 346 + + G N + + +H T P + GCVR+ Sbjct: 28 ------GDGVKTIAAGPDNPLGPVFVRLGDPKLGLGIHGTNAPASV---PGVRSHGCVRM 78 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS----- 401 ++ L + + + V +Y A +D+ Sbjct: 79 KSPDAL--------------EFAKTIASGSPASV----------IYQMAGLNEDADRNLW 114 Query: 402 IIQFRDDIYGLDNVHVGII 420 + FR D YG +N+ + + Sbjct: 115 LAAFR-DPYGKNNLDIASL 132 >gi|261365343|ref|ZP_05978226.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa ATCC 25996] gi|288566283|gb|EFC87843.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa ATCC 25996] Length = 332 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 71/231 (30%), Gaps = 69/231 (29%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NIP L +G++ V VG+ QT + +I FNP W IP+SI ++ Sbjct: 33 QHVVINIPQQRLFLYTDGQLTKIYPVAVGKAMTQTNLGEHKIGAKAFNPTWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + V P +F + ++ Sbjct: 93 ---------------------RGDGVK----SVPPGPNNPLGPVFVRLGDPKFSLG---- 123 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +H T P + GCVR+++ L + + Sbjct: 124 ---------IHGTNAPASV---PGVRSHGCVRMKSPDAL--------------EFAKTIA 157 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + D Y N+ + Sbjct: 158 TGAPASV----------IYQLASLNEDANKNLWLAAYRDPYNKKNLDTDAL 198 >gi|26247257|ref|NP_753297.1| hypothetical protein c1387 [Escherichia coli CFT073] gi|26107658|gb|AAN79857.1|AE016759_131 Hypothetical protein ycfS precursor [Escherichia coli CFT073] Length = 377 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 155 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 214 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 215 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 239 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 240 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 295 Query: 366 YHIEEVVK 373 I +K Sbjct: 296 NIINTPIK 303 >gi|288922819|ref|ZP_06416985.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] gi|288345834|gb|EFC80197.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] Length = 300 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 67/263 (25%), Gaps = 80/263 (30%) Query: 98 PIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P P L G + + L+ +L+ +G F + AV Q G+ G Sbjct: 99 PTGPPILRPGATGPEILELQRQLMTAGYWL--GTPDGTFGLLTQQAVLAVQKTAGIGLDG 156 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 +V +T A+ V R Q + V+ L+ V +G V Sbjct: 157 LVGPATRAAIARGVRPDARSTQ---------------GFVLEVDKGRQLLKIVRDGHVET 201 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 G I+ D Sbjct: 202 TLNTSTGTE---------------------------------------------QIYYHD 216 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMAS-TKIEFYSRNNTYMHDTPEPILFN 333 W FRQ G ++ + +++ + +H Sbjct: 217 GVQYLADTPPGTWRM-------FRQVNGVDHGSLGDLYRPKYFHADGIAIHGYAS----- 264 Query: 334 NVVRFETSGCVRVRNIIDLDVWL 356 R + GCVRV N WL Sbjct: 265 VPARAASHGCVRVTNAA--MDWL 285 >gi|288549505|ref|ZP_05967273.2| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Enterobacter cancerogenus ATCC 35316] gi|288318218|gb|EFC57156.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Enterobacter cancerogenus ATCC 35316] Length = 323 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 100 DAPREGIVINLAELRLYYYPPGKNEVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 159 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 160 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 184 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 185 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 224 >gi|307826384|ref|ZP_07656586.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307732561|gb|EFO03436.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 354 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 68/252 (26%), Gaps = 74/252 (29%) Query: 174 RQLQVNLMRIKKLLE-------------QKMGLRYVLVNIPAASLEAVENGK------VG 214 +++N + L++ + +NI + K Sbjct: 67 EIVRLNPDVDRWLVKKDEIVRLSNRRILPDSPHNGITLNISEYRMYYYPPTKKGQAPQQV 126 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 + VGR D +TP+ +++ R + NP W P SI ++ Sbjct: 127 MSYAHGVGRQDWKTPLGKTKVARKIMNPEWHPPESIRRE--------------------- 165 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 ++ G N + + + +H T + Sbjct: 166 --------------HAANGDPLPVVVPAGPHNPLGTRALYLDLPGEYRIHGTDIDKINGI 211 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV----HF 390 + T GCVR+ I ++V + + + V + Sbjct: 212 GM-QITHGCVRMY--------------PKDVEEIYDLVSVGTPVYI-VKQPIKVGWLDNV 255 Query: 391 VYISAWSPKDSI 402 +Y+ A + Sbjct: 256 LYVEAHPDLEGE 267 >gi|323190465|gb|EFZ75739.1| lysM domain protein [Escherichia coli RN587/1] Length = 319 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPSWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|301328513|ref|ZP_07221579.1| LysM domain protein [Escherichia coli MS 78-1] gi|300845120|gb|EFK72880.1| LysM domain protein [Escherichia coli MS 78-1] Length = 304 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|91210268|ref|YP_540254.1| hypothetical protein UTI89_C1241 [Escherichia coli UTI89] gi|117623298|ref|YP_852211.1| hypothetical protein APECO1_194 [Escherichia coli APEC O1] gi|218557994|ref|YP_002390907.1| hypothetical protein ECS88_1127 [Escherichia coli S88] gi|237706901|ref|ZP_04537382.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91071842|gb|ABE06723.1| hypothetical protein UTI89_C1241 [Escherichia coli UTI89] gi|115512422|gb|ABJ00497.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218364763|emb|CAR02453.1| conserved hypothetical protein [Escherichia coli S88] gi|226898111|gb|EEH84370.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294490390|gb|ADE89146.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli IHE3034] Length = 320 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|315291029|gb|EFU50392.1| LysM domain protein [Escherichia coli MS 153-1] Length = 306 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|110641289|ref|YP_669019.1| hypothetical protein ECP_1105 [Escherichia coli 536] gi|191173052|ref|ZP_03034585.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|300982405|ref|ZP_07176103.1| LysM domain protein [Escherichia coli MS 200-1] gi|306814037|ref|ZP_07448210.1| hypothetical protein ECNC101_18404 [Escherichia coli NC101] gi|110342881|gb|ABG69118.1| hypothetical protein YcfS precursor [Escherichia coli 536] gi|190906597|gb|EDV66203.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|300307242|gb|EFJ61762.1| LysM domain protein [Escherichia coli MS 200-1] gi|305852674|gb|EFM53122.1| hypothetical protein ECNC101_18404 [Escherichia coli NC101] gi|307627416|gb|ADN71720.1| hypothetical protein UM146_11755 [Escherichia coli UM146] gi|323953200|gb|EGB49066.1| ykud domain-containing protein [Escherichia coli H252] gi|323957939|gb|EGB53651.1| ykud domain-containing protein [Escherichia coli H263] gi|324005971|gb|EGB75190.1| LysM domain protein [Escherichia coli MS 57-2] gi|324013203|gb|EGB82422.1| LysM domain protein [Escherichia coli MS 60-1] Length = 319 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|220908597|ref|YP_002483908.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7425] gi|219865208|gb|ACL45547.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7425] Length = 204 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 39/150 (26%), Gaps = 53/150 (35%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + ++ +V V VG+ +TP R+ + NP + P + Sbjct: 84 QRRVYLYQDDQVAASYPVAVGKPGWETPTGKFRVMHKVVNPVFENPFN------------ 131 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSR 318 PG N + I F ++ Sbjct: 132 -----------------------------------GVVTPPGPGNPLGDRLIVFAKVGNK 156 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 H T L + GCVR++N Sbjct: 157 GYAGFHGTTNEALIGQ---AVSHGCVRMKN 183 >gi|145597090|ref|YP_001161387.1| cell wall hydrolase/autolysin [Salinispora tropica CNB-440] gi|145306427|gb|ABP57009.1| cell wall hydrolase/autolysin [Salinispora tropica CNB-440] Length = 392 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G+ +V +R+ L L P+ S FDA+ E AV+ FQ GL G V + Sbjct: 2 RPIRPGDRGPAVTEIRKVLAGLDLLVPAAPDSDEFDAHTERAVRAFQQSRGLSVDGRVGT 61 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T +A++ R R L + E +G + +E G R+ Sbjct: 62 ETWQALD---AARWRLGARTL--YHSVPEPLIGEDIRSLQE-----RLLEMGYDVGRADA 111 Query: 220 IVG-RVDRQTPILHSRI 235 I G R R + Sbjct: 112 IYGVRTARALAQFQREV 128 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 18/104 (17%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGD 123 +A + + G W L LG ++ L+ERL+ G Sbjct: 45 RAFQQSRGLSVDGRVGTETWQALDAARWRLGARTLYHSVPEPLIGEDIRSLQERLLEMGY 104 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + A+ FQ GL P G T+ ++ Sbjct: 105 --DVGRADAIYGVRTARALAQFQREVGLAPDGTCGPHTVNSLRR 146 >gi|215486324|ref|YP_002328755.1| hypothetical protein E2348C_1205 [Escherichia coli O127:H6 str. E2348/69] gi|215264396|emb|CAS08753.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|281178223|dbj|BAI54553.1| conserved hypothetical protein [Escherichia coli SE15] Length = 320 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|78224173|ref|YP_385920.1| ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] gi|78195428|gb|ABB33195.1| ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] Length = 300 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 50/169 (29%), Gaps = 47/169 (27%) Query: 197 LVNIPAASLEAVENGKVGL--RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +VN+ L V G V G ++TP+ R+ NP W +P SI Q+ Sbjct: 106 VVNLSELRLYFVPEGGTPRIVSFPVGTGSEGKETPLGVYRVTEKRANPAWHVPLSIRQER 165 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 P PG N + S + Sbjct: 166 ---------------------------------------PRLPAVVPPGPDNPLGSHALR 186 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H T P R + GC+R+ +I L + TP Sbjct: 187 LT-DDGLMIHGTNRPWGVG---RNVSHGCIRLYPEDIPVLFRLVSLGTP 231 >gi|254161219|ref|YP_003044327.1| hypothetical protein ECB_01109 [Escherichia coli B str. REL606] gi|242376915|emb|CAQ31634.1| L,D-transpeptidase YcfS [Escherichia coli BL21(DE3)] gi|253973120|gb|ACT38791.1| hypothetical protein ECB_01109 [Escherichia coli B str. REL606] gi|253977334|gb|ACT43004.1| hypothetical protein ECD_01109 [Escherichia coli BL21(DE3)] Length = 320 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|312968808|ref|ZP_07783015.1| lysM domain protein [Escherichia coli 2362-75] gi|331657176|ref|ZP_08358138.1| putative LysM domain protein [Escherichia coli TA206] gi|222032866|emb|CAP75605.1| Uncharacterized protein ycfS [Escherichia coli LF82] gi|312286210|gb|EFR14123.1| lysM domain protein [Escherichia coli 2362-75] gi|312945675|gb|ADR26502.1| hypothetical protein NRG857_05370 [Escherichia coli O83:H1 str. NRG 857C] gi|330910929|gb|EGH39439.1| l,D-transpeptidase YcfS [Escherichia coli AA86] gi|331055424|gb|EGI27433.1| putative LysM domain protein [Escherichia coli TA206] Length = 319 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|301059524|ref|ZP_07200437.1| putative Protein ErfK/srfK [delta proteobacterium NaphS2] gi|300446419|gb|EFK10271.1| putative Protein ErfK/srfK [delta proteobacterium NaphS2] Length = 259 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 50/175 (28%), Gaps = 51/175 (29%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS--TVIVGRVDRQTPILHSRINRIMFN 241 + +L ++ R +++N+ L N V +G D TP + N Sbjct: 53 QWILPER-NFRGIVINVAELRLYYYFNDGCPRVMTFPVGIGDRDWPTPAGRFTVREKRVN 111 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W IP S+ +K + + Sbjct: 112 PTWFIPPSLREKYQVRSI-----------------------------------------P 130 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 PG N + I + H T P R T GC+R+ +I L Sbjct: 131 PGPDNPLGRYWIGIGNDYGI--HGTDLPWSVG---RLVTRGCIRLYPEDIEQLFK 180 >gi|222053246|ref|YP_002535608.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. FRC-32] gi|221562535|gb|ACM18507.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. FRC-32] Length = 439 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 52/170 (30%), Gaps = 44/170 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK---VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++VN+ L + V V +G +R TP+ + R + P W + Sbjct: 121 DAPRKGIVVNLATMRLFHYKGDNNALVVTTYPVGIGTKERPTPMGQMFVQRKVSRPTWYV 180 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + + + R PG +N Sbjct: 181 PASIAED-----------------------------------HRKKGDPLPARVPPGPLN 205 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 + + + +H T +P ++GC+R+ N+ L Sbjct: 206 PLGECALYLSKP-SYLIHGTNKPASIG---LNASNGCLRLYPENVKMLYD 251 >gi|315296618|gb|EFU55913.1| LysM domain protein [Escherichia coli MS 16-3] Length = 319 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|197121993|ref|YP_002133944.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter sp. K] gi|196171842|gb|ACG72815.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter sp. K] Length = 284 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 46/180 (25%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 +L V+VN+ L + G + V +G+ +TP+ + P Sbjct: 76 WILPPSAAPGSVVVNLSEMRLYLLPGGDAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPT 135 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P S+ + D P R PG Sbjct: 136 WYPPASMRRDD---------------------------------------PTLPDRVPPG 156 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 N + + + + + +H T EP F R + GCVR+ +I L + TP Sbjct: 157 PDNPLGTHALRLSAG-SILIHGTDEP--FGIG-RKFSHGCVRLYPEDIPRLFEVVPLKTP 212 >gi|194439722|ref|ZP_03071791.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 101-1] gi|253773864|ref|YP_003036695.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300928332|ref|ZP_07143867.1| LysM domain protein [Escherichia coli MS 187-1] gi|194421341|gb|EDX37359.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 101-1] gi|253324908|gb|ACT29510.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300463664|gb|EFK27157.1| LysM domain protein [Escherichia coli MS 187-1] gi|323962712|gb|EGB58290.1| ykud domain-containing protein [Escherichia coli H489] gi|323973297|gb|EGB68486.1| ykud domain-containing protein [Escherichia coli TA007] gi|332342662|gb|AEE55996.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 319 Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|170681577|ref|YP_001744065.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|300938684|ref|ZP_07153408.1| LysM domain protein [Escherichia coli MS 21-1] gi|170519295|gb|ACB17473.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|300456329|gb|EFK19822.1| LysM domain protein [Escherichia coli MS 21-1] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|56413653|ref|YP_150728.1| LysM domain-containing protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362577|ref|YP_002142214.1| LysM domain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127910|gb|AAV77416.1| putative LysM domain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094054|emb|CAR59552.1| putative LysM domain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 333 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPMWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|224584113|ref|YP_002637911.1| LysM domain protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468640|gb|ACN46470.1| putative LysM domain protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 333 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 42/176 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 V+VN+ L G+ ++ + +G +TP++ +RI + + NP W Sbjct: 92 DAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMGTRIGQKIPNPTWTPTA 151 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I Q+ + G N + Sbjct: 152 GIRQRSL-----------------------------------ERGITLPPVIPAGPNNPL 176 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + N Y +H T P +SGC+R+ L + TP Sbjct: 177 GRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 229 >gi|291282133|ref|YP_003498951.1| hypothetical protein G2583_1373 [Escherichia coli O55:H7 str. CB9615] gi|209773014|gb|ACI84819.1| hypothetical protein ECs1491 [Escherichia coli] gi|290762006|gb|ADD55967.1| hypothetical protein G2583_1373 [Escherichia coli O55:H7 str. CB9615] Length = 320 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|218689065|ref|YP_002397277.1| hypothetical protein ECED1_1256 [Escherichia coli ED1a] gi|218426629|emb|CAR07457.1| conserved hypothetical protein [Escherichia coli ED1a] Length = 320 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|82777274|ref|YP_403623.1| hypothetical protein SDY_2037 [Shigella dysenteriae Sd197] gi|331652165|ref|ZP_08353184.1| putative LysM domain protein [Escherichia coli M718] gi|81241422|gb|ABB62132.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|331050443|gb|EGI22501.1| putative LysM domain protein [Escherichia coli M718] Length = 320 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|309788185|ref|ZP_07682791.1| lysM domain protein [Shigella dysenteriae 1617] gi|308924037|gb|EFP69538.1| lysM domain protein [Shigella dysenteriae 1617] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|227886530|ref|ZP_04004335.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300974585|ref|ZP_07172646.1| LysM domain protein [Escherichia coli MS 45-1] gi|301051098|ref|ZP_07197932.1| LysM domain protein [Escherichia coli MS 185-1] gi|227836734|gb|EEJ47200.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300297270|gb|EFJ53655.1| LysM domain protein [Escherichia coli MS 185-1] gi|300410527|gb|EFJ94065.1| LysM domain protein [Escherichia coli MS 45-1] gi|307553114|gb|ADN45889.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ABU 83972] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|110805127|ref|YP_688647.1| hypothetical protein SFV_1133 [Shigella flexneri 5 str. 8401] gi|110614675|gb|ABF03342.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281600529|gb|ADA73513.1| hypothetical protein SFxv_1270 [Shigella flexneri 2002017] Length = 321 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 99 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 158 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 159 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 183 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 184 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 239 Query: 366 YHIEEVVK 373 I +K Sbjct: 240 NIINTPIK 247 >gi|320659378|gb|EFX26947.1| hypothetical protein ECO5905_20078 [Escherichia coli O55:H7 str. USDA 5905] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|209918369|ref|YP_002292453.1| hypothetical protein ECSE_1178 [Escherichia coli SE11] gi|209911628|dbj|BAG76702.1| conserved hypothetical protein [Escherichia coli SE11] gi|284920938|emb|CBG34001.1| putative peptidoglycan-binding protein [Escherichia coli 042] Length = 321 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 99 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 158 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 159 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 183 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 184 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 239 Query: 366 YHIEEVVK 373 I +K Sbjct: 240 NIINTPIK 247 >gi|295096070|emb|CBK85160.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 337 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 50/218 (22%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D ++S + F L ++T+ +N I +L Sbjct: 48 DNKLQSIARRFNTAAQLILE---TNNTIAPVNPAPGTVITIPSQ-------MLLPDTERE 97 Query: 195 YVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G+ + + +G++ +TP+ +R+++ + NP W I + Sbjct: 98 GIVVNLAELRLYFYPPGENIVQVYPLGIGQLGLETPVSTTRVSQKIPNPTWTPTAGIRAR 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N + + Sbjct: 158 SLA-----------------------------------QGIKLPPVVPAGPNNPLGRFAL 182 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 N Y +H T P +SGC+R+ Sbjct: 183 RLGIGNGEYLIHGTSAPDSVG---LRVSSGCMRMNAPD 217 >gi|30062646|ref|NP_836817.1| hypothetical protein S1197 [Shigella flexneri 2a str. 2457T] gi|56479826|ref|NP_707028.2| hypothetical protein SF1117 [Shigella flexneri 2a str. 301] gi|30040892|gb|AAP16623.1| hypothetical protein S1197 [Shigella flexneri 2a str. 2457T] gi|56383377|gb|AAN42735.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|332767335|gb|EGJ97529.1| putative L,D-transpeptidase YcfS [Shigella flexneri 2930-71] Length = 320 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|15801230|ref|NP_287247.1| hypothetical protein Z1752 [Escherichia coli O157:H7 EDL933] gi|15830745|ref|NP_309518.1| hypothetical protein ECs1491 [Escherichia coli O157:H7 str. Sakai] gi|157160640|ref|YP_001457958.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] gi|170080764|ref|YP_001730084.1| hypothetical protein ECDH10B_1185 [Escherichia coli str. K-12 substr. DH10B] gi|188496367|ref|ZP_03003637.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|218553690|ref|YP_002386603.1| hypothetical protein ECIAI1_1150 [Escherichia coli IAI1] gi|218694646|ref|YP_002402313.1| hypothetical protein EC55989_1225 [Escherichia coli 55989] gi|238900367|ref|YP_002926163.1| hypothetical protein BWG_0961 [Escherichia coli BW2952] gi|254792496|ref|YP_003077333.1| hypothetical protein ECSP_1415 [Escherichia coli O157:H7 str. TW14359] gi|260843353|ref|YP_003221131.1| hypothetical protein ECO103_1158 [Escherichia coli O103:H2 str. 12009] gi|260854596|ref|YP_003228487.1| hypothetical protein ECO26_1446 [Escherichia coli O26:H11 str. 11368] gi|260867475|ref|YP_003233877.1| hypothetical protein ECO111_1390 [Escherichia coli O111:H- str. 11128] gi|293414406|ref|ZP_06657055.1| ycfS protein [Escherichia coli B185] gi|293433402|ref|ZP_06661830.1| ycfS protein [Escherichia coli B088] gi|331641656|ref|ZP_08342791.1| putative LysM domain protein [Escherichia coli H736] gi|331662524|ref|ZP_08363447.1| putative LysM domain protein [Escherichia coli TA143] gi|331667513|ref|ZP_08368377.1| putative LysM domain protein [Escherichia coli TA271] gi|331672628|ref|ZP_08373417.1| putative LysM domain protein [Escherichia coli TA280] gi|331676905|ref|ZP_08377601.1| putative LysM domain protein [Escherichia coli H591] gi|331682619|ref|ZP_08383238.1| putative LysM domain protein [Escherichia coli H299] gi|332279699|ref|ZP_08392112.1| conserved hypothetical protein [Shigella sp. D9] gi|12514663|gb|AAG55859.1|AE005321_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13360955|dbj|BAB34914.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|157066320|gb|ABV05575.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] gi|169888599|gb|ACB02306.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|188491566|gb|EDU66669.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|209773008|gb|ACI84816.1| hypothetical protein ECs1491 [Escherichia coli] gi|209773010|gb|ACI84817.1| hypothetical protein ECs1491 [Escherichia coli] gi|209773012|gb|ACI84818.1| hypothetical protein ECs1491 [Escherichia coli] gi|209773016|gb|ACI84820.1| hypothetical protein ECs1491 [Escherichia coli] gi|218351378|emb|CAU97084.1| conserved hypothetical protein [Escherichia coli 55989] gi|218360458|emb|CAQ98012.1| conserved hypothetical protein [Escherichia coli IAI1] gi|238860297|gb|ACR62295.1| conserved protein [Escherichia coli BW2952] gi|254591896|gb|ACT71257.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|257753245|dbj|BAI24747.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257758500|dbj|BAI29997.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257763831|dbj|BAI35326.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|291324221|gb|EFE63643.1| ycfS protein [Escherichia coli B088] gi|291434464|gb|EFF07437.1| ycfS protein [Escherichia coli B185] gi|309701384|emb|CBJ00685.1| putative peptidoglycan-binding protein [Escherichia coli ETEC H10407] gi|323937853|gb|EGB34117.1| ykud domain-containing protein [Escherichia coli E1520] gi|323942582|gb|EGB38749.1| ykud domain-containing protein [Escherichia coli E482] gi|324117316|gb|EGC11223.1| ykud domain-containing protein [Escherichia coli E1167] gi|331038454|gb|EGI10674.1| putative LysM domain protein [Escherichia coli H736] gi|331060946|gb|EGI32910.1| putative LysM domain protein [Escherichia coli TA143] gi|331065098|gb|EGI36993.1| putative LysM domain protein [Escherichia coli TA271] gi|331070271|gb|EGI41637.1| putative LysM domain protein [Escherichia coli TA280] gi|331075594|gb|EGI46892.1| putative LysM domain protein [Escherichia coli H591] gi|331080250|gb|EGI51429.1| putative LysM domain protein [Escherichia coli H299] gi|332102051|gb|EGJ05397.1| conserved hypothetical protein [Shigella sp. D9] Length = 320 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|218704524|ref|YP_002412043.1| hypothetical protein ECUMN_1291 [Escherichia coli UMN026] gi|293404402|ref|ZP_06648396.1| L,D-transpeptidase YcfS [Escherichia coli FVEC1412] gi|298380179|ref|ZP_06989784.1| ycfS protein [Escherichia coli FVEC1302] gi|218431621|emb|CAR12500.1| conserved hypothetical protein [Escherichia coli UMN026] gi|291428988|gb|EFF02013.1| L,D-transpeptidase YcfS [Escherichia coli FVEC1412] gi|298279877|gb|EFI21385.1| ycfS protein [Escherichia coli FVEC1302] Length = 320 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRMAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|313650431|gb|EFS14838.1| lysM domain protein [Shigella flexneri 2a str. 2457T] gi|332758276|gb|EGJ88599.1| lysM domain protein [Shigella flexneri 4343-70] gi|332761053|gb|EGJ91340.1| lysM domain protein [Shigella flexneri K-671] gi|333005662|gb|EGK25180.1| lysM domain protein [Shigella flexneri K-218] gi|333019353|gb|EGK38636.1| lysM domain protein [Shigella flexneri K-304] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|300896876|ref|ZP_07115366.1| LysM domain protein [Escherichia coli MS 198-1] gi|300359283|gb|EFJ75153.1| LysM domain protein [Escherichia coli MS 198-1] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRMAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|320197560|gb|EFW72173.1| L,D-transpeptidase YcfS [Escherichia coli WV_060327] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|170020492|ref|YP_001725446.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|187776311|ref|ZP_02801799.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4196] gi|188025150|ref|ZP_02776359.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4113] gi|189010664|ref|ZP_02808490.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|189402503|ref|ZP_02782835.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4401] gi|189403583|ref|ZP_02796346.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|189404503|ref|ZP_02789897.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4501] gi|189405395|ref|ZP_02815098.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC869] gi|189406283|ref|ZP_02827509.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC508] gi|193066279|ref|ZP_03047330.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E22] gi|193070913|ref|ZP_03051844.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] gi|194429794|ref|ZP_03062308.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B171] gi|195938872|ref|ZP_03084254.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4024] gi|208808997|ref|ZP_03251334.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|208816343|ref|ZP_03257522.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208822587|ref|ZP_03262906.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209398807|ref|YP_002269958.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|217327994|ref|ZP_03444076.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|256018631|ref|ZP_05432496.1| hypothetical protein ShiD9_06934 [Shigella sp. D9] gi|256023189|ref|ZP_05437054.1| hypothetical protein E4_07444 [Escherichia sp. 4_1_40B] gi|261256217|ref|ZP_05948750.1| hypothetical protein EscherichiacoliO157EcO_10354 [Escherichia coli O157:H7 str. FRIK966] gi|300821106|ref|ZP_07101255.1| LysM domain protein [Escherichia coli MS 119-7] gi|300902507|ref|ZP_07120487.1| LysM domain protein [Escherichia coli MS 84-1] gi|300917884|ref|ZP_07134517.1| LysM domain protein [Escherichia coli MS 115-1] gi|300922642|ref|ZP_07138739.1| LysM domain protein [Escherichia coli MS 182-1] gi|300948703|ref|ZP_07162780.1| LysM domain protein [Escherichia coli MS 116-1] gi|300956221|ref|ZP_07168533.1| LysM domain protein [Escherichia coli MS 175-1] gi|301023323|ref|ZP_07187116.1| LysM domain protein [Escherichia coli MS 69-1] gi|301029580|ref|ZP_07192658.1| LysM domain protein [Escherichia coli MS 196-1] gi|301305648|ref|ZP_07211737.1| LysM domain protein [Escherichia coli MS 124-1] gi|301644529|ref|ZP_07244522.1| LysM domain protein [Escherichia coli MS 146-1] gi|307137748|ref|ZP_07497104.1| hypothetical protein EcolH7_06395 [Escherichia coli H736] gi|307310110|ref|ZP_07589760.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|309796543|ref|ZP_07690950.1| LysM domain protein [Escherichia coli MS 145-7] gi|169755420|gb|ACA78119.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|187767857|gb|EDU31701.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4196] gi|188014622|gb|EDU52744.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4113] gi|188999155|gb|EDU68141.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|189355237|gb|EDU73656.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4401] gi|189359863|gb|EDU78282.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|189365188|gb|EDU83604.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4501] gi|189370390|gb|EDU88806.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC869] gi|189375507|gb|EDU93923.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC508] gi|192926051|gb|EDV80694.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E22] gi|192955767|gb|EDV86239.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] gi|194412141|gb|EDX28449.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B171] gi|208728798|gb|EDZ78399.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|208732991|gb|EDZ81679.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208738072|gb|EDZ85755.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209160207|gb|ACI37640.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|217318421|gb|EEC26847.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|260449748|gb|ACX40170.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|299877575|gb|EFI85786.1| LysM domain protein [Escherichia coli MS 196-1] gi|300316949|gb|EFJ66733.1| LysM domain protein [Escherichia coli MS 175-1] gi|300397048|gb|EFJ80586.1| LysM domain protein [Escherichia coli MS 69-1] gi|300405408|gb|EFJ88946.1| LysM domain protein [Escherichia coli MS 84-1] gi|300414874|gb|EFJ98184.1| LysM domain protein [Escherichia coli MS 115-1] gi|300420991|gb|EFK04302.1| LysM domain protein [Escherichia coli MS 182-1] gi|300451797|gb|EFK15417.1| LysM domain protein [Escherichia coli MS 116-1] gi|300526405|gb|EFK47474.1| LysM domain protein [Escherichia coli MS 119-7] gi|300839076|gb|EFK66836.1| LysM domain protein [Escherichia coli MS 124-1] gi|301077111|gb|EFK91917.1| LysM domain protein [Escherichia coli MS 146-1] gi|306909828|gb|EFN40322.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|308119855|gb|EFO57117.1| LysM domain protein [Escherichia coli MS 145-7] gi|315060390|gb|ADT74717.1| L,D-transpeptidase linking LPP to murein [Escherichia coli W] gi|315135745|dbj|BAJ42904.1| hypothetical protein ECDH1ME8569_1048 [Escherichia coli DH1] gi|315253013|gb|EFU32981.1| LysM domain protein [Escherichia coli MS 85-1] gi|315618285|gb|EFU98875.1| lysM domain protein [Escherichia coli 3431] gi|320188120|gb|EFW62785.1| L,D-transpeptidase YcfS [Escherichia coli O157:H7 str. EC1212] gi|320201008|gb|EFW75592.1| L,D-transpeptidase YcfS [Escherichia coli EC4100B] gi|320637564|gb|EFX07364.1| hypothetical protein ECO5101_10667 [Escherichia coli O157:H7 str. G5101] gi|320643125|gb|EFX12326.1| hypothetical protein ECO9389_04146 [Escherichia coli O157:H- str. 493-89] gi|320648583|gb|EFX17238.1| hypothetical protein ECO2687_20261 [Escherichia coli O157:H- str. H 2687] gi|323156750|gb|EFZ42886.1| lysM domain protein [Escherichia coli EPECa14] gi|323163657|gb|EFZ49479.1| lysM domain protein [Escherichia coli E128010] gi|323175268|gb|EFZ60881.1| lysM domain protein [Escherichia coli LT-68] gi|323175655|gb|EFZ61249.1| lysM domain protein [Escherichia coli 1180] gi|323185764|gb|EFZ71125.1| lysM domain protein [Escherichia coli 1357] gi|323379050|gb|ADX51318.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] gi|324017495|gb|EGB86714.1| LysM domain protein [Escherichia coli MS 117-3] gi|326339336|gb|EGD63150.1| L,D-transpeptidase YcfS [Escherichia coli O157:H7 str. 1125] gi|326340417|gb|EGD64220.1| L,D-transpeptidase YcfS [Escherichia coli O157:H7 str. 1044] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|320653897|gb|EFX21971.1| hypothetical protein ECO7815_16598 [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|323169990|gb|EFZ55646.1| lysM domain protein [Escherichia coli LT-68] Length = 339 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 47/185 (25%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVG-----RVDRQTPILHSRINRIM 239 LL + ++VN+ L G+ + + +G +TP++ +R+ + + Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPGLETPVMETRVGQKI 147 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W I Q+ + Sbjct: 148 PNPTWTPTAGIRQRSL-----------------------------------ERGIKLPPV 172 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 G N + + N Y +H T P +SGC+R+ L + Sbjct: 173 VPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSV 229 Query: 357 LKDTP 361 TP Sbjct: 230 RTGTP 234 >gi|307153544|ref|YP_003888928.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7822] gi|306983772|gb|ADN15653.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7822] Length = 216 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 56/202 (27%), Gaps = 59/202 (29%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNL---MRIKKLLEQKMGLR----YVLVNIPAASLEAVEN 210 + + ++ ++Q+ + E + + +++ + + + Sbjct: 47 GQDQINPIQETIEAPVQQIPTEAPPGDDGTGVTEPEAPPQVIETRLILKLKERRVYIYQG 106 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 + V VG+ +TP ++ +++ NP W P Sbjct: 107 DQQVAMYPVAVGKKGWETPTGDFQVLQMVPNPIWQNPW---------------------- 144 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTYMHDTPE 328 G + G N + I F+ +N H T Sbjct: 145 ------NGSIIP-------------------AGPRNPLGERWIGFWTDGKNYIGFHGTQA 179 Query: 329 PILFNNVVRFETSGCVRVRNII 350 L + GCVR+RN Sbjct: 180 EHLMGQ---AVSHGCVRMRNSD 198 >gi|261226983|ref|ZP_05941264.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. FRIK2000] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|191168573|ref|ZP_03030357.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] gi|190901367|gb|EDV61132.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] Length = 319 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|119493485|ref|ZP_01624152.1| Peptidoglycan-binding domain 1 protein [Lyngbya sp. PCC 8106] gi|119452668|gb|EAW33848.1| Peptidoglycan-binding domain 1 protein [Lyngbya sp. PCC 8106] Length = 612 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 19/203 (9%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID------SDIPII---SKE 73 + L + V D N F + + IP S+E Sbjct: 139 AIGLGQGDQGPGVTDLQTRLRQLGYFNTSPTGFFGSITQNAVIRFQQANLIPATGLVSEE 198 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 T+ + G LP L G++ +V L++RL G D ++ Sbjct: 199 TLVFLNNRVPTL-----PGNPTPLPSGVLQQGDTGPAVGVLQQRLFRLGFYDGE--ITNY 251 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FDA E AV FQ + + P+G V +T+ + I + + L ++G Sbjct: 252 FDARTEQAVIRFQQAYRIQPTGQVGPTTVSYLISATGEGIPSIPTTPVANPSLP-LRLGD 310 Query: 194 RYVLVNIPAASLEA--VENGKVG 214 R V++ L NG V Sbjct: 311 RGTSVSLVQQRLRVLGYYNGSVN 333 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 39/230 (16%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L + + + F D I + +++ + + ++A Y Sbjct: 217 LPSGVLQQGDTGPAVGVLQQRLFRLGFY------DGEITNYFDARTEQAVIRFQQA---Y 267 Query: 86 QD--------------ILSRG-GWPELPIRP-------LHLGNSSVSVQRLRERLIISGD 123 + I + G G P +P P L LG+ SV +++RL + G Sbjct: 268 RIQPTGQVGPTTVSYLISATGEGIPSIPTTPVANPSLPLRLGDRGTSVSLVQQRLRVLGY 327 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + ++ FD AV FQ +G+ +G+V ++T ++ + +++ ++ + Sbjct: 328 Y--NGSVNGIFDLTTRRAVLAFQQDYGISQTGVVGATT-QSYLISAVPQVQPRVISQVSN 384 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS---TVIVGRVDRQTPI 230 + + + VN P L A G+ + V GR +P+ Sbjct: 385 FGIPQGRPIGGIAPVNQPVNPLIA--QGRPFNPTPFAPVPQGRPMNVSPL 432 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G+ V +++ L G + ++ + AV FQ +GL G+V Sbjct: 58 AQLITQGSRGAEVSAIQQSLQSLGFF--NATVTGYYGPITRDAVIRFQQANGLSADGVVG 115 Query: 159 SSTLEAMN 166 +TL A+ Sbjct: 116 PNTLAALG 123 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 30/219 (13%) Query: 10 ILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPI 69 L + L + S V + I ++ S+ + F N PI Sbjct: 40 FLSLAVLTTALTLPQSAVAQLITQGSRGAEVSAIQQSLQSLGFFNATVTG-----YYGPI 94 Query: 70 ISKETIAQTEK------------AIAFYQDILSRGGWPELPIRP----LHLGNSSVSVQR 113 I + +A + + P+ L G+ V Sbjct: 95 TRDAVIRFQQANGLSADGVVGPNTLAAL-GLATNPNPEPPPLGRAAIGLGQGDQGPGVTD 153 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 L+ RL G + S F + ++AV FQ + + +G+V TL +N R+ Sbjct: 154 LQTRLRQLGYFNTSPT--GFFGSITQNAVIRFQQANLIPATGLVSEETLVFLN----NRV 207 Query: 174 RQLQVNLMRIKK--LLEQKMGLRYVLVNIPAASLEAVEN 210 L N + L + G ++ L + Sbjct: 208 PTLPGNPTPLPSGVLQQGDTGPAVGVLQQRLFRLGFYDG 246 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G++ V+++++RL ++ FD + AV FQ +G+ +G+V +T Sbjct: 447 VGDTGFEVRKVQQRLRDLNYY--RGPINGFFDRTTQDAVVRFQRSNGITQTGVVGPTTRI 504 Query: 164 AMNVPVD 170 M Sbjct: 505 YMFNSAQ 511 Score = 40.0 bits (92), Expect = 0.83, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 LG +S VQ L++RL + G + ++ E+AV Q +G + ++ Sbjct: 553 RLGTAS--VQELQKRLQVQGLY--EGPIDGVYNPQTEAAVNQAQEVYGSSANDVL 603 >gi|332092852|gb|EGI97920.1| hypothetical protein SD15574_2037 [Shigella dysenteriae 155-74] Length = 273 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 51 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 110 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 111 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 135 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 136 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 191 Query: 366 YHIEEVVK 373 I +K Sbjct: 192 NIINTPIK 199 >gi|74311674|ref|YP_310093.1| hypothetical protein SSON_1133 [Shigella sonnei Ss046] gi|73855151|gb|AAZ87858.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323165622|gb|EFZ51409.1| lysM domain protein [Shigella sonnei 53G] Length = 272 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 50 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 109 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 110 TANIRAR-----------------------------------YKAQGIELPTVVPAGPDN 134 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 135 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 190 Query: 366 YHIEEVVK 373 I +K Sbjct: 191 NIINTPIK 198 >gi|320179185|gb|EFW54143.1| L,D-transpeptidase YcfS [Shigella boydii ATCC 9905] Length = 273 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 51 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 110 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 111 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 135 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 136 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 191 Query: 366 YHIEEVVK 373 I +K Sbjct: 192 NIINTPIK 199 >gi|218700385|ref|YP_002408014.1| hypothetical protein ECIAI39_2047 [Escherichia coli IAI39] gi|218370371|emb|CAR18174.1| conserved hypothetical protein [Escherichia coli IAI39] Length = 320 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|157146185|ref|YP_001453504.1| hypothetical protein CKO_01941 [Citrobacter koseri ATCC BAA-895] gi|157083390|gb|ABV13068.1| hypothetical protein CKO_01941 [Citrobacter koseri ATCC BAA-895] Length = 322 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 99 DAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 158 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 159 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 183 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 184 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 223 >gi|300816815|ref|ZP_07097035.1| LysM domain protein [Escherichia coli MS 107-1] gi|300530589|gb|EFK51651.1| LysM domain protein [Escherichia coli MS 107-1] Length = 319 Score = 77.4 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|271964297|ref|YP_003338493.1| hypothetical protein Sros_2792 [Streptosporangium roseum DSM 43021] gi|270507472|gb|ACZ85750.1| hypothetical protein Sros_2792 [Streptosporangium roseum DSM 43021] Length = 264 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 74/267 (27%), Gaps = 68/267 (25%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L +G V+ L+ RL G + + ++AV FQ + + P+ V Sbjct: 53 PGKTLKIGAKGAEVKVLQTRLKELGYAP--GKIDGRYGGATQAAVWAFQKVNDISPTSTV 110 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL-- 215 T A+ P ++ L V +N+ + G+V L Sbjct: 111 ARRTWNALEAPRTPKV-------------LVPNGKPTRVEMNLAKQVMVLYVAGQVKLIS 157 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 ++ G +T + ++ R + Sbjct: 158 HTSSGSGIPYCETANWNGKVQRFCGDAR------------------------------TP 187 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 + W+ N + F++ H + Sbjct: 188 TGDYKTTWRRNGWHKSYLGQLY--------NPI------FFNG-GIAFHG-----ALSVP 227 Query: 336 VRFETSGCVRVR-NIIDLDVWLLKDTP 361 + + GCVR+ N+ + LL + Sbjct: 228 LAPASHGCVRLPMNVAGMLPGLLGKSV 254 >gi|145300422|ref|YP_001143263.1| peptidoglycan-binding LysM [Aeromonas salmonicida subsp. salmonicida A449] gi|142853194|gb|ABO91515.1| peptidoglycan-binding LysM [Aeromonas salmonicida subsp. salmonicida A449] Length = 308 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 74/261 (28%), Gaps = 63/261 (24%) Query: 135 DAYVESAVKLFQM--RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +E+ FQ+ + L+ + D L+A R+ L+ Sbjct: 51 GQPLEAVAAKFQLGLTNMLEANPKADPLLLQAG-----ERLVIPHQ-------LILPDAP 98 Query: 193 LRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSI 250 +++N+ L GK V + +G++ TP + + R P W + Sbjct: 99 REGIVLNVAEMRLYYYPKGKKVVEVLPIGIGQLGTDTPENWVTSVQRKKAGPTWTPTAKM 158 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + + G N M Sbjct: 159 HAE-----------------------------------YAARGESLPAVWPAGPDNPMGL 183 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH--- 367 + H T F +R + GCVR+RN +L K P +R Sbjct: 184 FALYIGKMYAI--HGTNAQ--FGIGLR-VSHGCVRLRNED--IEYLFKQIPVGTRVQFVN 236 Query: 368 --IEEVVKTRKTTPVKLATEV 386 I+ V+ +++ + Sbjct: 237 QPIKATVEPDGRRYLEVHQPL 257 >gi|332759475|gb|EGJ89783.1| lysM domain protein [Shigella flexneri 2747-71] Length = 301 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 79 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 138 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 139 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 163 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 164 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 219 Query: 366 YHIEEVVK 373 I +K Sbjct: 220 NIINTPIK 227 >gi|323947583|gb|EGB43587.1| ykud domain-containing protein [Escherichia coli H120] Length = 301 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 79 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 138 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 139 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 163 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 164 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 219 Query: 366 YHIEEVVK 373 I +K Sbjct: 220 NIINTPIK 227 >gi|302536402|ref|ZP_07288744.1| lipoprotein [Streptomyces sp. C] gi|302445297|gb|EFL17113.1| lipoprotein [Streptomyces sp. C] Length = 288 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 8/138 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ S V+ L+ RL S + + + +AVK FQ +HGL +G VD +T + Sbjct: 86 GDESEQVRELQARLRQL--KLVSTAPTAFYGSKTTAAVKTFQSQHGLPATGSVDEATWQK 143 Query: 165 MN----VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + P D +R N + + M R + ++ + +L + +GKV V Sbjct: 144 VQGLTKKPTDDELRPPTTNEVDA--PDPRCMQGRVMCISKESRTLAWMIDGKVVSTMDVR 201 Query: 221 VGRVDRQTPILHSRINRI 238 G + T ++ Sbjct: 202 FGSENTPTREGLFQVEWK 219 >gi|332089283|gb|EGI94389.1| lysM domain protein [Shigella boydii 5216-82] Length = 213 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 51 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 110 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 111 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 135 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 136 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 191 Query: 366 YHIEEVVK 373 I +K Sbjct: 192 NIINTPIK 199 >gi|300866800|ref|ZP_07111480.1| Peptidoglycan-binding domain 1 (fragment) [Oscillatoria sp. PCC 6506] gi|300335209|emb|CBN56640.1| Peptidoglycan-binding domain 1 (fragment) [Oscillatoria sp. PCC 6506] Length = 491 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 32/208 (15%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W P L G+ V L++ L G +DA +AV+ FQ GL Sbjct: 48 WGN-PALALRRGDRGPEVVELQKNLQTRGYYAGETT--GFYDAATRAAVRKFQQEKGLRV 104 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G+ TL + + L ++ + Sbjct: 105 DGIAGRRTLSKLQSKSEESQATLTTTKTYSQQTSK-----------------------SE 141 Query: 214 GLRSTVIVGRVDRQT--PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 ++ I G+ D +++ + P+S++ Q+ Y + I Sbjct: 142 NVKPPAIDGKTDNAPKKAETSNKMTLKKTIYGNISPKSVVYSGAGLFFAQNMMY--RHTI 199 Query: 272 HMIDEKGKEVF--VEEVDWNSPEPPNFI 297 + D K V + V ++ F Sbjct: 200 SVYDRKFNLVKTIPDTVKLSAFGFSKFK 227 >gi|323967054|gb|EGB62480.1| ykud domain-containing protein [Escherichia coli M863] gi|323976514|gb|EGB71602.1| ykud domain-containing protein [Escherichia coli TW10509] gi|327253512|gb|EGE65150.1| lysM domain protein [Escherichia coli STEC_7v] Length = 319 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|294497796|ref|YP_003561496.1| putative peptidoglycan binding domain-containing protein [Bacillus megaterium QM B1551] gi|294347733|gb|ADE68062.1| Putative peptidoglycan binding domain protein [Bacillus megaterium QM B1551] Length = 354 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 91 RGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G P L G+ +V+ L+++L G ++G F A +SAV+ FQ H Sbjct: 182 SGSTPAPSTGTVLKKGSKGNAVKELQQKLTSLGY--NTQGTDGVFGANTDSAVRKFQKDH 239 Query: 150 GLDPSGMVDSSTLEAMNVP 168 GL G+V ST +A+ Sbjct: 240 GLTADGIVGPSTYKALGSS 258 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G+ +VQ L+++L G +KG F A E+AV+ FQ + L G+ Sbjct: 286 TKQTLKKGSKGSNVQALQKKLTAIGY--NTKGTDGIFGANTEAAVRNFQKDNKLAADGIA 343 Query: 158 DSSTLEAMNV 167 +TL A++ Sbjct: 344 GPNTLTAISK 353 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 43/176 (24%), Gaps = 61/176 (34%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +++N L +NG + +V GR TP H + N P Sbjct: 31 AASTPSHLIIINKATNKLAYYQNGSLVRTFSVGTGRTQSLTPEGHF----KVVNKIVNRP 86 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KIN 306 NI G N Sbjct: 87 ------------------YYKGNI-----------------------------PGGDPRN 99 Query: 307 AMASTKIEFYSRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 + + + +R +H P + +SGCVR+ + + WL Sbjct: 100 PLGNRWLGLNARGTYGTTYAIHGNNNPASIGK---YVSSGCVRMYD--EEVEWLFS 150 >gi|156934400|ref|YP_001438316.1| hypothetical protein ESA_02231 [Cronobacter sakazakii ATCC BAA-894] gi|156532654|gb|ABU77480.1| hypothetical protein ESA_02231 [Cronobacter sakazakii ATCC BAA-894] Length = 324 Score = 77.0 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 45/185 (24%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVD- 225 P R + + + R L + +L+N+ L G+ + +G++D Sbjct: 81 PYVPRAGSV-LTIPRQMLLPDAPREG--ILINLAELRLYYFAPGENTVTVYPIGIGQLDG 137 Query: 226 -RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 TP + + +++ NP W +I + Sbjct: 138 DTLTPTMQTTVSQKRANPTWTPTANIRAR------------------------------- 166 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGC 343 + + G N M I + Y +H T F +R +SGC Sbjct: 167 ----YKAQGIDLPAVMPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGC 219 Query: 344 VRVRN 348 +R+R+ Sbjct: 220 IRLRD 224 >gi|119512142|ref|ZP_01631234.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] gi|119463232|gb|EAW44177.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] Length = 407 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV+ L+E+L +G ++ +D E AV+ FQ HGL G+V S Sbjct: 65 ALERGDQGPSVKNLQEQLQQAGFY--QAPITEVYDFSTEDAVRRFQQAHGLAVDGIVGVS 122 Query: 161 TLEAMNVPVDLRIRQ 175 T + + +I+Q Sbjct: 123 TRQKLETSPTPQIKQ 137 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ S +V+ L+ERL ++G F E A+K FQ + LD G+ +T Sbjct: 202 LQKGDESEAVRILQERLRVAGFFSGQAT--GVFGPVTEDALKAFQQAYELDVDGIAGPAT 259 Query: 162 LEAMNV 167 L + Sbjct: 260 LRKLPT 265 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 13/151 (8%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD-MGIDSDIPIISKETIAQTEKAIA- 83 + E + + F + A + D ++ IA Sbjct: 197 PNPNLLQKGDESEAVRILQERLRVAGFFSGQATGVFGPVTEDALKAFQQAYELDVDGIAG 256 Query: 84 --FYQDILSRG-------GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + + G + L G+ +V+ L++ LI +G S F Sbjct: 257 PATLRKLPTLGVGGEQTPPIQAVSTDNLTRGHQGEAVKLLQQHLIQAGYFK--GTPSGYF 314 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 D+ +AV FQ + L SG+ +T + Sbjct: 315 DSSTAAAVSQFQAANYLAVSGIAGPTTRAKL 345 >gi|156934683|ref|YP_001438599.1| hypothetical protein ESA_02518 [Cronobacter sakazakii ATCC BAA-894] gi|156532937|gb|ABU77763.1| hypothetical protein ESA_02518 [Cronobacter sakazakii ATCC BAA-894] Length = 306 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 44/187 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G + + +G++ + TPI +++ R NP Sbjct: 91 LILPDTPHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWVTKVERKRANPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + G Sbjct: 151 WTPTAKMHAE-----------------------------------YAAAGEPLPPVVPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+RN +L ++ P Sbjct: 176 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFENVPVG 228 Query: 364 SRYHIEE 370 +R Sbjct: 229 TRVQFVN 235 >gi|324113536|gb|EGC07511.1| ykud domain-containing protein [Escherichia fergusonii B253] Length = 324 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSHVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 KIINTPIK 245 >gi|218548643|ref|YP_002382434.1| hypothetical protein EFER_1277 [Escherichia fergusonii ATCC 35469] gi|218356184|emb|CAQ88801.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] Length = 326 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 99 DAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 158 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 159 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 183 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ TP Sbjct: 184 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSHVTPGTKV 239 Query: 366 YHIEEVVK 373 I +K Sbjct: 240 KIINTPIK 247 >gi|311279980|ref|YP_003942211.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308749175|gb|ADO48927.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 321 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L G+ + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINLAELRLYYYPPGQNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + G N Sbjct: 158 TANIRAR-----------------------------------YKANGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|119488958|ref|ZP_01621893.1| ErfK/YbiS/YcfS/YnhG-like protein [Lyngbya sp. PCC 8106] gi|119454914|gb|EAW36057.1| ErfK/YbiS/YcfS/YnhG-like protein [Lyngbya sp. PCC 8106] Length = 193 Score = 77.0 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 61/214 (28%), Gaps = 65/214 (30%) Query: 153 PSGMVDSST-LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G+V + + + P + Q+ + +++ + + Sbjct: 35 NDGVVAAKLSVTKFSTPKSSLLHQI----------SKPSDPKLQLIIRLSDRRVYVYRQD 84 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 ++ + VGR +TP ++ + + P W P + +++ Sbjct: 85 QLLTSYPIAVGRDGWETPTGQYQVIQKIQEPAWEHPFT---GEIIP-------------- 127 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTYMHDTPEP 329 PG N + I F+ N H TP Sbjct: 128 ------------------------------PGPDNPLGMRWIGFWTDGTNYIGFHGTPNE 157 Query: 330 ILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + GC+R+ +++ L ++ TP Sbjct: 158 DTVGQ---AASHGCIRMLNQDVQLLFEKVMIGTP 188 >gi|13472170|ref|NP_103737.1| hypothetical protein mlr2376 [Mesorhizobium loti MAFF303099] gi|14022915|dbj|BAB49523.1| mlr2376 [Mesorhizobium loti MAFF303099] Length = 200 Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 49/193 (25%), Gaps = 29/193 (15%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI-MFNPYWVIPRSIIQKDMMALLRQD 262 E + + R ++ + + + I + + Sbjct: 9 YHNVTEKLAERFHISEQLLRRLNPGIGFRKAGTKLLVPDIDRGDSPATIAGIEVDKGARL 68 Query: 263 PQYLKDNNIHMI-------------DEKGKEVFVEEVDWNSPEPPNF---------IFRQ 300 + L + + EV + P F F Sbjct: 69 VRVLDPSGKWLAVFPASIGSAEKPAPGGEAEVKRVVRNPTYHYDPRFAFKGVKAKRPFTI 128 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLK 358 G N + S I+ + +H TPEP + GC+R+ N DL + K Sbjct: 129 AAGPNNPVGSVWIDLSIE-SYGIHGTPEPGKIGTT---FSHGCIRLTNWDAEDLASMVQK 184 Query: 359 DTPTWSRYHIEEV 371 T + + Sbjct: 185 GTKVSFKDEMANA 197 >gi|296102869|ref|YP_003613015.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057328|gb|ADF62066.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 321 Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINLAELRLYYYPPGKNEVSVYPIGIGQLGGDTLTPTMITTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIDLPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|260597485|ref|YP_003210056.1| hypothetical protein CTU_16930 [Cronobacter turicensis z3032] gi|260216662|emb|CBA29996.1| Uncharacterized protein ycfS [Cronobacter turicensis z3032] Length = 324 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 45/185 (24%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVD- 225 P R + + + R L + +L+NI L G K + +G++D Sbjct: 81 PYVPRAGSV-LTIPRQMLLPDAPREG--ILINIAELRLYYFPPGEKSVTVYPIGIGQLDG 137 Query: 226 -RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 TP + + +++ NP W +I + Sbjct: 138 DTLTPTMQTTVSQKRANPTWTPTANIRAR------------------------------- 166 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGC 343 + + G N M I + Y +H T F +R +SGC Sbjct: 167 ----YKAQGIDLPPVVPAGPENPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGC 219 Query: 344 VRVRN 348 +R+R+ Sbjct: 220 IRLRD 224 >gi|260597218|ref|YP_003209789.1| L,D-transpeptidase [Cronobacter turicensis z3032] gi|260216395|emb|CBA29460.1| Uncharacterized protein ybiS [Cronobacter turicensis z3032] Length = 309 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 44/187 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G + + +G++ + TPI +++ R NP Sbjct: 94 LILPDTPHEGIVINSAEMRLYYYPQGTNTVIVLPIGIGQLGKDTPINWVTKVERKRANPT 153 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + G Sbjct: 154 WTPTAKMHAE-----------------------------------YAAAGEPLPPVVPAG 178 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+RN +L ++ P Sbjct: 179 PDNPMGLYALYIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRNED--IKFLFENVPVG 231 Query: 364 SRYHIEE 370 +R Sbjct: 232 TRVQFVN 238 >gi|332090818|gb|EGI95910.1| lysM domain protein [Shigella boydii 5216-82] Length = 334 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNLLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|294054341|ref|YP_003547999.1| Peptidoglycan-binding domain 1 protein [Coraliomargarita akajimensis DSM 45221] gi|293613674|gb|ADE53829.1| Peptidoglycan-binding domain 1 protein [Coraliomargarita akajimensis DSM 45221] Length = 350 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 89/297 (29%), Gaps = 48/297 (16%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y ++ R +P G + L+ L +G + A+ Sbjct: 51 YYYLVVRPAERAVP-----PGRPIANNVELQIALARNGF--SPGSIDGVPGNQTRQALTA 103 Query: 145 FQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQ-----LQVNLMRIKKLLEQKMGLR-YV 196 FQ L+PSG++D +T + + P LQV + + Y Sbjct: 104 FQQSRKLEPSGVLDEATKHYLRIEDPCFTHYTLTGRDFLQVTAKPKTWREREYLESMAYN 163 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 + A + + + R++ R+ + + + + I + D+ Sbjct: 164 SIKEMLAERSLSDPDYIAR----LNPRMNWGAAKPGDRVLLPVI-APYSVTQKIARIDIS 218 Query: 257 AL--------------------LRQDPQYLKDNNIHM---IDEKGKEVFVEEVDWNSPEP 293 + + + ++ + +D+ + + Sbjct: 219 LSQRSLQLIDQAGKVHFHCPVSIARQIEKRPLGDLEVTVRVDQPNYTFNPSILTATAERE 278 Query: 294 P-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 F PG N + I +R + +H TP P R E+SGC R+ N Sbjct: 279 GITRKFVIPPGPNNPVGLAWIGL-NRPSYGIHGTPVPEQVG---RTESSGCFRLANW 331 >gi|116747924|ref|YP_844611.1| ErfK/YbiS/YcfS/YnhG family protein [Syntrophobacter fumaroxidans MPOB] gi|116696988|gb|ABK16176.1| ErfK/YbiS/YcfS/YnhG family protein [Syntrophobacter fumaroxidans MPOB] Length = 321 Score = 76.6 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 64/217 (29%), Gaps = 54/217 (24%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + R +++N+P + + G + +G ++PI I NP Sbjct: 100 TFWVLPPTQHRQLVINVPELRIYFFDKSGNAVQTYPIGIGDEGWESPIGTFSITEKRPNP 159 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W IP S+ +K MA + P Sbjct: 160 TWYIPASLQEKYGMAQM-----------------------------------------PP 178 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N + ++F + +H T P R + GC+R + + + Sbjct: 179 GPENPLGEFMMKFSAG-AYGVHGTAMPWGVG---RLVSHGCIRCY-PEHIRILYPQVPVG 233 Query: 363 WSRYHIEEVVKTRK-------TTPVKLATEVPVHFVY 392 + I E +K + + ++P + Y Sbjct: 234 YKLEMIYEPIKFGQKNGQVFVEAHPDVYRKIPDYIQY 270 >gi|325497054|gb|EGC94913.1| hypothetical protein ECD227_1151 [Escherichia fergusonii ECD227] Length = 324 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSHVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 KIINTPIK 245 >gi|218507870|ref|ZP_03505748.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Brasil 5] Length = 103 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD ++N +D+FD +R + S+ PI+ +++A ++AI YQ I + Sbjct: 35 QSALDGLLNAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSVASAQQAIMQYQQIAAA 94 Query: 92 GGWPELPIR 100 GGWPE+ Sbjct: 95 GGWPEVNPG 103 >gi|296134424|ref|YP_003641671.1| spore cortex-lytic enzyme [Thermincola sp. JR] gi|296033002|gb|ADG83770.1| spore cortex-lytic enzyme [Thermincola potens JR] Length = 229 Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V +L+ RL G + F A AVK FQ +HGL P G+V +T A Sbjct: 36 GSKGSDVIKLQTRLKDWGYFK--GPVDGVFGAATSRAVKNFQRKHGLTPDGVVGPATWRA 93 Query: 165 MNVPVDLR 172 + + R Sbjct: 94 LGISAFSR 101 >gi|218689620|ref|YP_002397832.1| hypothetical protein ECED1_1877 [Escherichia coli ED1a] gi|306815069|ref|ZP_07449225.1| hypothetical protein ECNC101_23543 [Escherichia coli NC101] gi|331657653|ref|ZP_08358615.1| putative LysM domain protein [Escherichia coli TA206] gi|218427184|emb|CAR08070.2| conserved hypothetical protein [Escherichia coli ED1a] gi|305851717|gb|EFM52170.1| hypothetical protein ECNC101_23543 [Escherichia coli NC101] gi|315299726|gb|EFU58966.1| LysM domain protein [Escherichia coli MS 16-3] gi|324007052|gb|EGB76271.1| LysM domain protein [Escherichia coli MS 57-2] gi|331055901|gb|EGI27910.1| putative LysM domain protein [Escherichia coli TA206] Length = 334 Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 42/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYNYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 N + + N Y +H T P +SGC+R+ L + TP Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFSSVRTGTP 229 >gi|209524094|ref|ZP_03272645.1| 40-residue YVTN family beta-propeller repeat protein [Arthrospira maxima CS-328] gi|209495469|gb|EDZ95773.1| 40-residue YVTN family beta-propeller repeat protein [Arthrospira maxima CS-328] Length = 510 Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 15/242 (6%) Query: 74 TIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 T+A E I I++R + R L G+ V L+ RL G + + Sbjct: 16 TVASAESPINRETQIVARATPTQNQTPRVLRRGSRGQEVAELQIRLRELGYFNNPNLGN- 74 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM----NVPVDLRIRQLQVNLMRIKKLLE 188 F + AV+ FQ GL P G+V T +A+ P + + Sbjct: 75 -FGPITQQAVRQFQSDRGLRPDGIVGQETRQALALIPPSPKTPEVATTPPPQPTATQPPP 133 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR----QTPILHSRINRIMFNPYW 244 ++ + ++ + + + R++ + Sbjct: 134 PATPPAAKPPAATPPAININYDLPKVFQTAIALLKNPSFVEAPPRDPSGRMSHVKTITGP 193 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF--VEEVDWNSPEPPNFIFRQDP 302 + P+SI+ Q+ Y + I + D + + + ++ F Sbjct: 194 IAPKSIVHSGKGLFFAQNMMY--RHTITVYDRNFDLIKTIPDSIKFSDFGFSKFTGNHRG 251 Query: 303 GK 304 Sbjct: 252 SP 253 >gi|254385203|ref|ZP_05000535.1| lipoprotein [Streptomyces sp. Mg1] gi|194344080|gb|EDX25046.1| lipoprotein [Streptomyces sp. Mg1] Length = 292 Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 8/135 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ S V+ L+ RL + + + + +AVK FQ R+GL SG VD+ T + Sbjct: 90 GDDSEQVRELQARLKQLKLMSVAPT--GFYGSKTTTAVKSFQSRNGLTASGSVDAETWKK 147 Query: 165 MN----VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + P +R VN + + M R + ++ + +L + +GKV V Sbjct: 148 IQGLTKKPTADELRPPTVNEVDA--PDPRCMTGRVMCISKESRTLAWMIDGKVISTMDVR 205 Query: 221 VGRVDRQTPILHSRI 235 G + T + Sbjct: 206 FGSENTPTREGVFDV 220 >gi|170768032|ref|ZP_02902485.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] gi|170122798|gb|EDS91729.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] Length = 320 Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNAVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFNQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|85859402|ref|YP_461604.1| erfK/srfK family protein [Syntrophus aciditrophicus SB] gi|85722493|gb|ABC77436.1| erfK/srfK family protein [Syntrophus aciditrophicus SB] Length = 445 Score = 76.2 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 44/185 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLR---STVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +++N+ A L + L V +G +R TP+ + R P W + Sbjct: 127 DAPRKGIVINLAAMRLFQFKGDGKFLTVSTYPVGIGSEERPTPMGQMYVQRKTARPTWHV 186 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + + + + PG N Sbjct: 187 PASIAED-----------------------------------HRKKGDILPAKVPPGPDN 211 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + + + +H T +P T+GC+R+ + L ++TP +R Sbjct: 212 PLGEYALYLSNP-SYLIHGTNKPASIG---LNATNGCIRLY-PEHI-KKLYENTPVNTRV 265 Query: 367 HIEEV 371 I Sbjct: 266 SIVNQ 270 >gi|333004925|gb|EGK24445.1| lysM domain protein [Shigella flexneri VA-6] Length = 229 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 157 TANIRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|225386952|ref|ZP_03756716.1| hypothetical protein CLOSTASPAR_00702 [Clostridium asparagiforme DSM 15981] gi|225046964|gb|EEG57210.1| hypothetical protein CLOSTASPAR_00702 [Clostridium asparagiforme DSM 15981] Length = 538 Score = 76.2 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 8/122 (6%) Query: 55 FLARVDMGIDSDIPIIS--KETIAQTE---KAIAFYQDILSRGGWPELPIRPLHLGNSSV 109 A S+ +I ETIA + + + D + G +P L +G Sbjct: 29 AGAEKTEATPSEARVIQVVPETIAPLGLDGQVLPYLAD-VDLGDAEPIPDY-LRIGVRHA 86 Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 V +L+ RL+ G +D + + AVK FQ ++ L G+V +ST +A+ P Sbjct: 87 IVAKLQARLMELGFMDNDEPTD-YYGEMTVQAVKHFQRQNELAQDGIVGNSTWDAIMSPD 145 Query: 170 DL 171 Sbjct: 146 AK 147 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 9/141 (6%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + V I+ + ++ F D D + + + Sbjct: 76 PDYLRIGVRHAIVAKLQARLMELGF----MDNDEPTDYYGEMTVQAVKHFQRQNELAQDG 131 Query: 88 ILSRGGW-----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I+ W P+ + G +QR+++RL G L + ++ F E+AV Sbjct: 132 IVGNSTWDAIMSPDAKYYAVSKGTQGDDIQRIQQRLYELGYLATADLVTGNFGDSTEAAV 191 Query: 143 KLFQMRHGLDPSGMVDSSTLE 163 Q +GL+ G V T+ Sbjct: 192 LKLQEVNGLNMDGKVGQKTIN 212 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG +V+R+++ L G L S ++ + ++AVK FQ R+GL G+V T Sbjct: 295 LMLGERGDAVKRMQQLLSKHGYL-YSGNVTGYYGEATQTAVKNFQSRNGLSVDGLVGVQT 353 Query: 162 LEAMNVPVDLR 172 L ++ R Sbjct: 354 LAKLSSDNVRR 364 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V ++RL G L + A+K FQ R+ G + ST Sbjct: 224 LSYGEKSDVVLACQKRLKELGYLTTEP--DGTYGEDTAIAIKQFQARNDQIVDGYLGPST 281 Query: 162 LEAMNVP 168 A++ P Sbjct: 282 RMALDSP 288 >gi|87303656|ref|ZP_01086431.1| hypothetical protein WH5701_12803 [Synechococcus sp. WH 5701] gi|87281761|gb|EAQ73726.1| hypothetical protein WH5701_12803 [Synechococcus sp. WH 5701] Length = 229 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 51/190 (26%), Gaps = 70/190 (36%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 R ++++ + +E+G+ R V VG +TP+ ++ + +P W P S Sbjct: 85 PERSLVLHRSKRQVVVIEDGRELRRFPVAVGMPGWETPLGRFQVIEMAPDPVWKHPVSGK 144 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 PG N + S Sbjct: 145 LY-----------------------------------------------PPGPNNPLGSR 157 Query: 312 KIEFYSRNNT------------------YMHDTPEPILFNNVVRFETSGCVRV--RNIID 351 I F+ H TP+ + GCVR+ N+ D Sbjct: 158 WIGFHRDCAGKRGFNGQQHLEVKGCVTAGFHGTPQRETVGQ---AVSHGCVRMYDENVRD 214 Query: 352 LDVWLLKDTP 361 L + T Sbjct: 215 LFELVRMGTV 224 >gi|302870718|ref|YP_003839355.1| cell wall hydrolase/autolysin [Micromonospora aurantiaca ATCC 27029] gi|302573577|gb|ADL49779.1| cell wall hydrolase/autolysin [Micromonospora aurantiaca ATCC 27029] Length = 417 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + +RP+ G+ +V +R L L G +DA E AV+ FQ GL G Sbjct: 30 VVVRPIRPGDQGPAVAEIRTVLAGLELLPAEAGGDD-YDAQTERAVRAFQQSRGLSVDGR 88 Query: 157 VDSSTLEAMNV 167 V + T A++ Sbjct: 89 VGAETWRALDA 99 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 18/104 (17%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGD 123 +A + + G W L G V+ L+ERL+ G Sbjct: 75 RAFQQSRGLSVDGRVGAETWRALDAARWRFGARALYHAVPEPLTGEDVRSLQERLLEMGY 134 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + AV FQ GL P G T+ A+ Sbjct: 135 DVGRA--DAIYGIRTSRAVAQFQREMGLKPDGSCGPHTVNALRR 176 >gi|269140434|ref|YP_003297135.1| ErfK/YbiS/YcfS/YnhG family protein [Edwardsiella tarda EIB202] gi|267986095|gb|ACY85924.1| ErfK/YbiS/YcfS/YnhG family protein [Edwardsiella tarda EIB202] gi|304560228|gb|ADM42892.1| L,D-transpeptidase YbiS [Edwardsiella tarda FL6-60] Length = 306 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 52/185 (28%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G++ R TP+ + + R P Sbjct: 91 LILPNTPHEGIVINSAEMRLYYYPKGSKTVIVLPIGIGQLGRDTPMNWVTSVQRKKAGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + ++ + G Sbjct: 151 WT-PTKKMHEE----------------------------------YAANGQYLPAVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R+ WL + P Sbjct: 176 PDNPMGLYALYVGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRDPD--IKWLFDNVPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|295703171|ref|YP_003596246.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium DSM 319] gi|294800830|gb|ADF37896.1| N-acetylmuramoyl-L-alanine amidase cwlL (Cell wall hydrolase) (Autolysin) [Bacillus megaterium DSM 319] Length = 281 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G+ +V+ L+++L G +KG F A +SAV+ FQ HGL G+V Sbjct: 113 TGTVLKKGSKGNAVKELQQKLTSLGY--NTKGTDGVFGANTDSAVRKFQKDHGLTADGIV 170 Query: 158 DSSTLEAMNVP 168 ST +A+ Sbjct: 171 GPSTYKALGSS 181 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G+ +VQ L+++L G +KG F A ESAV+ FQ + L G+ Sbjct: 213 TKQTLKKGSKGSNVQALQKKLTALGY--DTKGTDGIFGANTESAVRNFQKDNKLAADGIA 270 Query: 158 DSSTLEAMNV 167 +TL A++ Sbjct: 271 GPNTLAAISK 280 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 11/76 (14%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTY----MHDTPEPILFNNVVRFETSG 342 N + PG N + + + +R +H P + +SG Sbjct: 3 NKIVNRPYYKGNIPGGDPRNPLGNRWLGLNARGTYGTTYAIHGNNNPASIGK---YVSSG 59 Query: 343 CVRVRNIIDLDVWLLK 358 CVR+ + + WL Sbjct: 60 CVRMYD--EEVEWLFS 73 >gi|294637825|ref|ZP_06716097.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Edwardsiella tarda ATCC 23685] gi|291089024|gb|EFE21585.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Edwardsiella tarda ATCC 23685] Length = 306 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G++ R TP+ + + R P Sbjct: 91 LILPNTPHEGIVINSAEMRLYYYPKGSKTVVVLPIGIGQLGRDTPMNWVTSVQRKKAGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + ++ + G Sbjct: 151 WT-PTKKMHEE----------------------------------YAANGQYLPAVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R+ WL ++ P Sbjct: 176 PDNPMGLYALYVGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRDPD--IKWLFENIPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|254425312|ref|ZP_05039030.1| ErfK/YbiS/YcfS/YnhG family [Synechococcus sp. PCC 7335] gi|196192801|gb|EDX87765.1| ErfK/YbiS/YcfS/YnhG family [Synechococcus sp. PCC 7335] Length = 189 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 54/174 (31%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + ++++I + + ++ V VG + TPI + +++ NP W P Sbjct: 60 LANNRIVLSISDRRVYLFDGNELVNSYPVAVGTPETPTPIGEFAVTQLVVNPVWQSP--- 116 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 W + PG +A+ Sbjct: 117 -------------------------------------WTGE-------VRSPGPNSALGL 132 Query: 311 TKIEF--YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 I F S + H TP + ++GCVR+ N +L + T Sbjct: 133 RWIGFTSNSEGSFGFHGTPTVESIGH---AASNGCVRMHNADVIELFSQVAIGT 183 >gi|121535699|ref|ZP_01667503.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] gi|121305730|gb|EAX46668.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] Length = 238 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 27/173 (15%) Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFI 297 + N P + + R Y GK V ++ Sbjct: 44 IPNQPTTAPTGTVSIIIKVPERILEVYNDGQLYKKYRVAVGKSKTPTPVGEWKVVWKDYN 103 Query: 298 FRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 + + + + Y +H T P RF + GC+R+RN + +L Sbjct: 104 W------GSGFGTRWMGLNVPWGVYGIHGTNNPWSIG---RFASHGCIRMRNKDVEELFE 154 Query: 355 WLLKDTPTW---SRYHIEEVVKTRKT------TPVKLATEVPVHFVYISAWSP 398 W+ T + ++ +K + T VKL Y+ A + Sbjct: 155 WVPIGTEVKIVGPKVKVQRTLKKQMTGADVVMLQVKLKE-----LGYLKARAD 202 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L + V L+ +L G L F A E AV+ FQ GL+ +G+V+ Sbjct: 173 RTLKKQMTGADVVMLQVKLKELGYLKARA--DGIFGAVTEEAVRAFQADKGLEVNGVVNR 230 Query: 160 STLEAMNV 167 L+ + + Sbjct: 231 QMLDLLGI 238 >gi|255067759|ref|ZP_05319614.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria sicca ATCC 29256] gi|255047970|gb|EET43434.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria sicca ATCC 29256] Length = 147 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 71/192 (36%) Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 QT + +I FNP W IP+SI ++ Sbjct: 2 TQTTLGEHKIGAKAFNPTWHIPKSIQKER------------------------------- 30 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN-NTYMHDTPEPILFNNVVRFETSGCV 344 + + G N + + +H T P + GCV Sbjct: 31 --------GDGVKSVPAGPNNPLGPVFVRLGDPKLGLGIHGTNAPASV---PGVRSHGCV 79 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI-- 402 R+++ L + + + V +Y A +D+ Sbjct: 80 RMKSPDAL--------------EFAKTIASGAPASV----------IYQMASLNEDANQN 115 Query: 403 --IQFRDDIYGL 412 + D YG Sbjct: 116 LWLAAYHDPYGK 127 >gi|282898625|ref|ZP_06306613.1| ErfK/YbiS/YcfS/YnhG [Cylindrospermopsis raciborskii CS-505] gi|281196493|gb|EFA71402.1| ErfK/YbiS/YcfS/YnhG [Cylindrospermopsis raciborskii CS-505] Length = 204 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 44/166 (26%), Gaps = 52/166 (31%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 V+V++ + +V + VG+ +TP ++ +P W Sbjct: 71 PGAGNNQSDVVVDLSDRRVYVYRYDQVVASYPIAVGKKGWETPTGTFKVIHKEHHPIWKH 130 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + + G + Sbjct: 131 PITGKIFE-----------------------------------------------AGTDS 143 Query: 307 AMASTKIEFYS--RNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + I F+S +N H TP L + GC+R+RN Sbjct: 144 PLGDRWIGFWSDGKNEIGFHGTPNKDLIG---GAVSHGCLRMRNPD 186 >gi|196230054|ref|ZP_03128917.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196225651|gb|EDY20158.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 363 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 51/183 (27%), Gaps = 55/183 (30%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 LE + + KV V VG +PI H + + M R DP Sbjct: 226 MLEVLVDDKVAAAFPVTVGSQQTASPIGHWTVKAVAK---------------MPTFRYDP 270 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 LK E + PG N + I ++ + Sbjct: 271 LMLKKG----------------------ERSSHANLLPPGPNNPVGVLWIAL-NKKGIGI 307 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 H T +P R + GC+R+ N W + +VK V Sbjct: 308 HGTNDPDSIG---RNASHGCIRLAN--------------WDVVKLAGMVKPGVPVTVDDN 350 Query: 384 TEV 386 + + Sbjct: 351 SPL 353 >gi|299143670|ref|ZP_07036750.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518155|gb|EFI41894.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 260 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 25/209 (11%), Positives = 55/209 (26%), Gaps = 60/209 (28%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 +K FQ L +G ++ T + N++ + +++VN Sbjct: 44 IKKFQALSNLTVTGKINDITKK----------VLYNSNMVVKDDIQNAPTSGEWIVVNKT 93 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 +L + + +G + TP +I NP W Sbjct: 94 KKTLTFYSGTAPMYKFPIALGTNETPTPSAKGKIQSKHVNPAW----------------- 136 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR--N 319 + + + N + + + Sbjct: 137 -------GGM---------------------NGKYKPAKADDPNNPLGERWMGLSLPGYS 168 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + ++GC+R+ N Sbjct: 169 GYGIHGTIKPHQIGT---YASNGCMRMFN 194 >gi|160872859|ref|ZP_02062991.1| LysM domain protein [Rickettsiella grylli] gi|159121658|gb|EDP46996.1| LysM domain protein [Rickettsiella grylli] Length = 326 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 57/237 (24%) Query: 139 ESAVKLFQMRHGLDPS--GMVDS-------STLEAMNV--PVDLRIRQLQVNLMRIKKLL 187 E V Q L + +EA + P + + V R L Sbjct: 47 EDIVGQVQWTQALPGDTFNTIGRRYDMGYFELVEANPMINPDHPPLGSIIVIPSRF-ILP 105 Query: 188 EQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++ G +++N+ + + + + V +GR TP+ S I M NP W + Sbjct: 106 PKRQG---LIINLAELRIYYYPSHRHIVITYPVGIGREGWDTPLGPSWIAEKMRNPIWTV 162 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + + E + PG N Sbjct: 163 PESIRKDR-----------------------------------AKEGVYLPIKVAPGPDN 187 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + + +H T + R ++GC+R+ +I L + + Sbjct: 188 PLGGYAMRL-KQVTYLIHGTNDSQGIG---RRSSAGCIRLFPEDIESLFAQVARKEK 240 >gi|20808596|ref|NP_623767.1| LysM repeat-containing protein [Thermoanaerobacter tengcongensis MB4] gi|254479061|ref|ZP_05092416.1| LysM domain protein [Carboxydibrachium pacificum DSM 12653] gi|20517226|gb|AAM25371.1| LysM-repeat proteins and domains [Thermoanaerobacter tengcongensis MB4] gi|214035017|gb|EEB75736.1| LysM domain protein [Carboxydibrachium pacificum DSM 12653] Length = 324 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L LG+ V L+ RL G + F E+AVK +Q GL P+ Sbjct: 172 PPVEYPTLRLGDRGPFVVNLQARLKSLGF--DPGPIDGIFGPKTEAAVKAYQQSRGLPPT 229 Query: 155 GMVDSSTLEAM 165 G+VD +T A+ Sbjct: 230 GIVDETTWNAL 240 >gi|254409634|ref|ZP_05023415.1| ErfK/YbiS/YcfS/YnhG family [Microcoleus chthonoplastes PCC 7420] gi|196183631|gb|EDX78614.1| ErfK/YbiS/YcfS/YnhG family [Microcoleus chthonoplastes PCC 7420] Length = 237 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 52/160 (32%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++V++ A + + + V VG+ +TP + ++ R NP W P I Sbjct: 110 DVRLVVDLSDAKVYSYWGEQEIASYPVAVGQPGWETPTGNFKVLRKQRNPIWRQP---IT 166 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 D++ G N + Sbjct: 167 GDLIPT--------------------------------------------GPDNPLGDRW 182 Query: 313 IEFYSR--NNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 I F+S + H T + L + GC+R+RN Sbjct: 183 IGFWSDEYHQIGFHGTNDEDLVGQP---VSHGCLRMRNAD 219 >gi|330838933|ref|YP_004413513.1| ErfK/YbiS/YcfS/YnhG family protein [Selenomonas sputigena ATCC 35185] gi|329746697|gb|AEC00054.1| ErfK/YbiS/YcfS/YnhG family protein [Selenomonas sputigena ATCC 35185] Length = 409 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 80/251 (31%) Query: 177 QVNLMRIKKLLEQKMGLRYVLV-NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 +V+ +K +K G Y ++ N+ A SL +N + V +G++ TP+ + + Sbjct: 49 KVHASEVKSAAAEKTGDPYKIIINVAARSLGVYKNNEKIRLYPVGLGKLSTPTPVGYFSV 108 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 E + +P + Sbjct: 109 LTK----------------------------------------------EENPTWVDPGD 122 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G+ N + ++ + H T P + + ++GC+R++ Sbjct: 123 SKNTIPSGEGNPLGYRWMQVWGNYGI--HGTNHPESIGS---YVSNGCIRMKEA------ 171 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP--KDSIIQF--RDDIYG 411 + + PV +Y KD++I + D YG Sbjct: 172 --------DVEEVYDYASVGT----------PVEIMYQRIVIDKIKDNMIVYYIYPDGYG 213 Query: 412 LDNVHVGIIPL 422 + V + Sbjct: 214 YQPLDVETVAK 224 >gi|260887313|ref|ZP_05898576.1| ErfK/YbiS/YcfS/YnhG family protein [Selenomonas sputigena ATCC 35185] gi|260862949|gb|EEX77449.1| ErfK/YbiS/YcfS/YnhG family protein [Selenomonas sputigena ATCC 35185] Length = 429 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 80/251 (31%) Query: 177 QVNLMRIKKLLEQKMGLRYVLV-NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 +V+ +K +K G Y ++ N+ A SL +N + V +G++ TP+ + + Sbjct: 69 KVHASEVKSAAAEKTGDPYKIIINVAARSLGVYKNNEKIRLYPVGLGKLSTPTPVGYFSV 128 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 E + +P + Sbjct: 129 LTK----------------------------------------------EENPTWVDPGD 142 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G+ N + ++ + H T P + + ++GC+R++ Sbjct: 143 SKNTIPSGEGNPLGYRWMQVWGNYGI--HGTNHPESIGS---YVSNGCIRMKEA------ 191 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP--KDSIIQF--RDDIYG 411 + + PV +Y KD++I + D YG Sbjct: 192 --------DVEEVYDYASVGT----------PVEIMYQRIVIDKIKDNMIVYYIYPDGYG 233 Query: 412 LDNVHVGIIPL 422 + V + Sbjct: 234 YQPLDVETVAK 244 >gi|297568912|ref|YP_003690256.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] gi|296924827|gb|ADH85637.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] Length = 348 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 47/195 (24%) Query: 187 LEQKMGLRYVLVNIPAASLEAV---ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 L Q +++N+P L + ++ + V +G DR TP+ I + + +P Sbjct: 135 LPQIPSEPGMVLNLPEKRLYYFYRRNDNRLVISFPVGIGTADRGTPLGDFSITQKLTDPS 194 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P S+ ++ P+ PG Sbjct: 195 WTVPASVREQR---------------------------------------PHLPAIVPPG 215 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + ++ + ++H T P R T GC R+ D+ V Sbjct: 216 PDNPMGAYALQLSGG-SYFIHGTNRPWSIG---RRATLGCARLY-PEDIPVLFRMADRGT 270 Query: 364 SRYHIEEVVKTRKTT 378 I + VK + Sbjct: 271 PVRIIHQPVKVGRQQ 285 >gi|315506955|ref|YP_004085842.1| cell wall hydrolase/autolysin [Micromonospora sp. L5] gi|315413574|gb|ADU11691.1| cell wall hydrolase/autolysin [Micromonospora sp. L5] Length = 386 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G+ +V +R L L G +DA E AV+ FQ GL G V + Sbjct: 2 RPIRPGDQGPAVAEIRTVLAGLELLPAEAGGDD-YDAQTERAVRAFQQSRGLSVDGRVGA 60 Query: 160 STLEAMNV 167 T A++ Sbjct: 61 ETWRALDA 68 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 18/104 (17%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGD 123 +A + + G W L G V+ L+ERL+ G Sbjct: 44 RAFQQSRGLSVDGRVGAETWRALDAARWRFGARALYHAVPEPLTGEDVRSLQERLLEMGY 103 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + AV FQ GL P G T+ A+ Sbjct: 104 DVGRA--DAIYGIRTSRAVAQFQREMGLKPDGSCGPHTVNALRR 145 >gi|307331938|ref|ZP_07611033.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces violaceusniger Tu 4113] gi|306882412|gb|EFN13503.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces violaceusniger Tu 4113] Length = 299 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 4/154 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + +G S V+ L+ RL G + + + +++V +Q HGL + Sbjct: 87 PRVAPPVIAVGTSGDRVRELQARLRALGLFNRNPT--GYYGTITQASVSAYQRGHGLSVT 144 Query: 155 GMVDSSTLEAMNVPVD--LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G V T ++ R + + + K + + R + ++ + +L + NG+ Sbjct: 145 GSVSRRTWTSLRSATKTPTRDQLHPPTTLPLAKPDPRCLTGRVLCISKTSRTLAWMVNGR 204 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 V V G T ++N + I Sbjct: 205 VVSAMDVRFGSEYTPTREGLFQVNFKSRDHVSTI 238 >gi|82544419|ref|YP_408366.1| hypothetical protein SBO_1948 [Shigella boydii Sb227] gi|81245830|gb|ABB66538.1| conserved hypothetical protein [Shigella boydii Sb227] gi|332094472|gb|EGI99521.1| lysM domain protein [Shigella boydii 3594-74] Length = 320 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + + + G N Sbjct: 158 TANTRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|239629092|ref|ZP_04672123.1| peptidoglycan-binding domain 1 protein [Clostridiales bacterium 1_7_47_FAA] gi|239519238|gb|EEQ59104.1| peptidoglycan-binding domain 1 protein [Clostridiales bacterium 1_7_47FAA] Length = 559 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 9/143 (6%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + + V EI+ + +++ F D D + + Sbjct: 98 PAPEYLRIGVRHEIVKKLQQRLMDLGF----MDNDEPTDYFGEMTQMAVKHFQRQNELPM 153 Query: 86 QDILSRGGWPELPIRPLH-----LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 I+ W + G +QR+++RL G L + ++ F E+ Sbjct: 154 DGIVGNATWDAIMAEDAKYYAVSKGTQGDDIQRIQQRLYELGYLASADLVTGNFGDSTEA 213 Query: 141 AVKLFQMRHGLDPSGMVDSSTLE 163 AV Q +GLD G V T+ Sbjct: 214 AVLKLQEVNGLDQDGKVGQRTIN 236 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V++L++RL+ G +D + F + AVK FQ ++ L G+V ++T Sbjct: 103 LRIGVRHEIVKKLQQRLMDLGFMDNDEPTD-YFGEMTQMAVKHFQRQNELPMDGIVGNAT 161 Query: 162 LEAM 165 +A+ Sbjct: 162 WDAI 165 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 11/160 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGIDSDIPIISKET 74 L + + +++ E + + + D + + + Sbjct: 237 LLYSDEIKPNFLAYGEKSDVVLECQKRLKDLGYLTTTPDGAYGEDTVVAVKQFQARNDQV 296 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + I P+ L LG S +V ++++ L G L S ++ F Sbjct: 297 VDG---YLGPSTRIALNS--PDARANGLMLGESGDAVIKVQKLLNKHGYL-VSGNVTGYF 350 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 E A+K FQ R+GL G+V T+ + R Sbjct: 351 GEATERAIKNFQSRNGLTSDGLVGVQTMAKLTSDNVRRPA 390 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V ++RL G L + A+ AVK FQ R+ G + ST Sbjct: 248 LAYGEKSDVVLECQKRLKDLGYL--TTTPDGAYGEDTVVAVKQFQARNDQVVDGYLGPST 305 Query: 162 LEAMNVPVDLRIRQLQV 178 A+N D R L + Sbjct: 306 RIALN-SPDARANGLML 321 >gi|187730975|ref|YP_001880717.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella boydii CDC 3083-94] gi|187427967|gb|ACD07241.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella boydii CDC 3083-94] Length = 320 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPTGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + + + G N Sbjct: 158 TANTRAR-----------------------------------YKAQGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|320184240|gb|EFW59054.1| L,D-transpeptidase YcfS [Shigella flexneri CDC 796-83] Length = 319 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 97 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 156 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + + + G N Sbjct: 157 TANTRAR-----------------------------------YKAQGIELPAVVPAGPDN 181 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 182 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 237 Query: 366 YHIEEVVK 373 I +K Sbjct: 238 NIINTPIK 245 >gi|138896743|ref|YP_001127196.1| cell wall lytic activity [Geobacillus thermodenitrificans NG80-2] gi|134268256|gb|ABO68451.1| Cell wall lytic activity [Geobacillus thermodenitrificans NG80-2] Length = 627 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 10/151 (6%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + + E + F PI + A + A Sbjct: 27 AAEWKVGMSSSKVKELQQLLKEKGF----FSYPQATGYFGPITEEAVRAFQKAANLPVTG 82 Query: 88 ILSRGGWPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 ++ + +L R L +G V+ L++RL G ++ F E+AV Sbjct: 83 VVDDATYAKLRAFVPTARTLSVGMRGDDVKVLQQRLKQLGYFK-YPEITGYFGTVTEAAV 141 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 K FQ +GL +G D+ T+E + + Sbjct: 142 KQFQQANGLKVTGKADAVTIERLRQAASKQA 172 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 78/293 (26%), Gaps = 31/293 (10%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRF------DNFLARVDMGIDSDIPIISKETIA 76 + + + + + + + + V + Sbjct: 94 AFVPTARTLSVGMRGDDVKVLQQRLKQLGYFKYPEITGYFGTVTEAAVKQF--QQANGLK 151 Query: 77 QTEKA----IAFYQDIL-SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 T KA I + + L +G+ V L++ L + G + Sbjct: 152 VTGKADAVTIERLRQAASKQATTTSSSSVTLKIGSRGSEVSELQKNLKLLGYFT-YPTAT 210 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + AV+ FQ +GL +G VDS+TL + V + L Sbjct: 211 GYYGTITADAVRRFQKDNGLPATGSVDSTTLGRIADAVKKKTAPPAKENSSSVYLKIGTR 270 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI- 250 G + V L I G T + R + + S+ Sbjct: 271 GEKVKQVQTNLKQLGY-------FTYPEITGYYGTITA---DAVRRFQKDNGLPVTGSVD 320 Query: 251 -----IQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPEPPNFI 297 +D + P +++++ G++V + + + Sbjct: 321 STTFGRIEDAVKKKTASPAKESSSSVYLKTGTRGEKVKQVQTNLKQLGYFTYP 373 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 1/107 (0%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V++++ L G ++ + AV+ FQ +GL +G VDS+T Sbjct: 348 LKTGTRGEKVKQVQTNLKQLGYFT-YPEITGYYGTITADAVRRFQKDNGLPVTGSVDSTT 406 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 + V + L G V L Sbjct: 407 FGRIEDAVKKKTAPPAEENRTSIYLTIGTRGEEVKRVQTKLKQLGYF 453 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V+R++ +L G ++ + AV+ FQ L +G+VDS T Sbjct: 431 LTIGTRGEEVKRVQTKLKQLGYFT-YPEITGYYGTITADAVRRFQKDAKLQANGIVDSQT 489 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 E + Q + + + +L+ Sbjct: 490 YERLIGQAPASKGQASASKLDVMELIAD 517 >gi|91792069|ref|YP_561720.1| ErfK/YbiS/YcfS/YnhG [Shewanella denitrificans OS217] gi|91714071|gb|ABE53997.1| ErfK/YbiS/YcfS/YnhG [Shewanella denitrificans OS217] Length = 304 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK + + +G++ + TP + + R NP W Sbjct: 94 PREGIVINVAEMRLYYYPKGKNIVEVLPIGIGQIGKDTPEKWVTTVQRKRANPTWTPTPR 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I +K+ +A G N M Sbjct: 154 I-RKEYLAK----------------------------------GEVLPAVWPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R + GC+R+R+ L P +R Sbjct: 179 LFALYIGNLYAI--HGTNA--TFGIGLR-ISQGCIRLRDAD--IEHLFNSVPEGTRVEFT 231 Query: 370 EV 371 Sbjct: 232 NQ 233 >gi|313887561|ref|ZP_07821244.1| ErfK/YbiS/YcfS/YnhG [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846439|gb|EFR33817.1| ErfK/YbiS/YcfS/YnhG [Peptoniphilus harei ACS-146-V-Sch2b] Length = 270 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 63/227 (27%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 +K +Q R L +G +++ T +A+ N + +++VN Sbjct: 44 LKKWQARMNLPVTGGMNAKTKQAL----------YTENYEVYDMVTNPPTSGNWIVVNKS 93 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 +L + G+ + V +G TP +RI+ + NP W Sbjct: 94 RRTLTLYKGGQALGKFPVTLGTGSTPTPSAKARIHNMHKNPAW----------------- 136 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRN 319 + + N + + ++ Sbjct: 137 -------GGM---------------------GGKYTPVASNDPNNPLGERWMGLSIPGKS 168 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNII---DLDVWLLKDTPTW 363 +H +P+ + ++GC+R+ N ++ + P W Sbjct: 169 GYGIHGNIKPLQIG---GYYSNGCIRMFNYDIENEIFPKMKVGAPVW 212 >gi|330830952|ref|YP_004393904.1| LysM domain-containing protein [Aeromonas veronii B565] gi|328806088|gb|AEB51287.1| LysM domain protein [Aeromonas veronii B565] Length = 306 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 44/223 (19%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + + N VD + + L+ +L+ +++N+ L Sbjct: 55 IAADFQLGLTNIMEANPGVDPYLPKAGSTLIIPHQLILPNAPREGIVINVAEMRLYYYPK 114 Query: 211 GK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 GK V + +G++ TP +++ R NP W +I ++ Sbjct: 115 GKNVVEVLPIGIGQLGVNTPENWITKVERKRANPTWTPTENIRRR--------------- 159 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 + + G N M + + H T Sbjct: 160 --------------------YAAQGKTLPAVWPAGPDNPMGLHALYIGNLYAI--HGTNA 197 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 F +R +SGCVR+R D+ +L + P +R Sbjct: 198 --TFGIGLR-VSSGCVRLR-ADDI-KYLFDNVPVGTRVQFVNQ 235 >gi|311280300|ref|YP_003942531.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308749495|gb|ADO49247.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 300 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 45/195 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G + + +G++ + TPI + + R P Sbjct: 85 LILPDTPHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTAVERKKAGPT 144 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + A G Sbjct: 145 WTPTAKMHAEYIAA-----------------------------------GNPLPSVVPAG 169 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+RN D +L ++ P Sbjct: 170 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFQNVPVG 222 Query: 364 SR-YHIEEVVKTRKT 377 +R I+E VK Sbjct: 223 TRVQFIDEAVKATTE 237 >gi|117619278|ref|YP_857770.1| LysM domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560685|gb|ABK37633.1| LysM domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 308 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK V + +G++ TP +++ R NP W + Sbjct: 96 PREGIVINVAEMRLYYYPKGKNVVQVLPIGIGQLGVNTPENWITKVERKRANPTWTPTEN 155 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + + G N M Sbjct: 156 IRRR-----------------------------------YAAQGKTLPAVWPAGPDNPMG 180 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R +SGCVR+R D+ +L + P +R Sbjct: 181 LHALYIGNLYAI--HGTNA--TFGIGLR-VSSGCVRLR-ADDI-KYLFDNVPVGTRVQFV 233 Query: 370 EV 371 Sbjct: 234 NQ 235 >gi|328542077|ref|YP_004302186.1| ATP synthase subunit [polymorphum gilvum SL003B-26A1] gi|326411827|gb|ADZ68890.1| ATP synthase subunit [Polymorphum gilvum SL003B-26A1] Length = 199 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 58/207 (28%), Gaps = 44/207 (21%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + T ++ D+ + + R ++++ A L V+ +R Sbjct: 30 TTQTWVQYSITPDVAGKIARRKFKRSVISYSGPEKPGTIIIDTKARWLYHVQENGKAVRY 89 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + VGR D T ++ R P W P +I ++ Sbjct: 90 GIGVGR-DGFTWKGEEKVTRKAEWPGWTPPPEMIVRE----------------------- 125 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVV 336 G N M + + + Y +H T E Sbjct: 126 ------------RKNGRRLPAFMAGGPKNPMGARALYLGN--TIYRIHGTNEDWSIGQ-- 169 Query: 337 RFETSGCVRV--RNIIDLDVWLLKDTP 361 +SGC+R+ ++ L + T Sbjct: 170 -AVSSGCIRMLNEDVEHLYERVKIGTK 195 >gi|288936382|ref|YP_003440441.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] gi|288891091|gb|ADC59409.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] Length = 329 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 124 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 183 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + G N M + Sbjct: 184 -----------------------------------YAAAGNPLPAVVPAGPDNPMGLYAL 208 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 209 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 256 >gi|17229032|ref|NP_485580.1| hypothetical protein alr1540 [Nostoc sp. PCC 7120] gi|17135360|dbj|BAB77906.1| alr1540 [Nostoc sp. PCC 7120] Length = 128 Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ L G+S +V L+ L G + F A ++AV FQ +GL G Sbjct: 11 KVAEPVLRQGDSGAAVTELQRLLNAKG---VKVSVDGIFGAGTQAAVIKFQRANGLTADG 67 Query: 156 MVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 +V S T A+ +R+ + +N + Q L ++ IPAA+L Sbjct: 68 IVGSKTWVALRKVPTPTIRLVDVALNYDPTQ-FPHQVAALEWLQSQIPAATL 118 >gi|196047194|ref|ZP_03114410.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196021943|gb|EDX60634.1| conserved hypothetical protein [Bacillus cereus 03BB108] Length = 186 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 72/229 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 P ++ I VK++K+ + V A+ + + F Sbjct: 141 DRIPIGTKVWI---VKSKKSFQQLAKEKGAV------AYEKANGKVGFF 180 >gi|56965585|ref|YP_177319.1| endopeptidase, cell wall lytic activity [Bacillus clausii KSM-K16] gi|56911831|dbj|BAD66358.1| cell wall lytic activity endopeptidase [Bacillus clausii KSM-K16] Length = 417 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG+ + V L+ +L G + + + SAV+ FQ +GL Sbjct: 204 PASSTGSLRLGDRNSQVTDLQNQLRSLGYFNQNAT--GYYGEVTRSAVREFQKNNGLSAD 261 Query: 155 GMVDSSTLEAMNVPVDL 171 G+ T ++ Sbjct: 262 GIAGPQTFAKLSNSPAP 278 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+ SV L+E L G + S + AV+ FQ + L Sbjct: 118 PSSKTSLLRVGSRGGSVTALQEDLRKLGFFNQSPT--GYYGTVTRDAVRAFQRANNLQAD 175 Query: 155 GMVDSSTLEAMN 166 G+ +T A+ Sbjct: 176 GIAGPATQAALK 187 Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L G S V L+ L G + F + AV +Q + L G Sbjct: 30 ALGDRTLRQGMSHPDVTELQNALKEKGFFT-YGTATGYFGTHTRDAVIAYQKANNLLVDG 88 Query: 156 MVDSSTLEAMN 166 + TL ++ Sbjct: 89 VAGPQTLSSLT 99 >gi|94676943|ref|YP_588889.1| hypothetical protein BCI_0448 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220093|gb|ABF14252.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 315 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 70/246 (28%), Gaps = 61/246 (24%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVG 222 N VD+ + + NL+ +L+ +++NI L G + V +G Sbjct: 73 EANPDVDVYLPESNTNLIFPTQLILPDTKHIGIIINIAEMRLYYYPKGTNKVVVLPVGIG 132 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + ++TP + ++R P W +I ++ Sbjct: 133 ELGQETPCWVTSVHRKKHLPSWTPSNAIKKE----------------------------- 163 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 G N M + + H T F +R + G Sbjct: 164 ------YKARGIIIPDVFPAGANNPMGLYALYIGNSYAI--HGTNAN--FGIGLR-ISHG 212 Query: 343 CVRVRNIIDLDVWLLKDTP-TWSRYHIEEVVK-----------------TRKTTPVKLAT 384 C+R+R+ DL +L P I E VK + Sbjct: 213 CIRLRD-NDL-KYLFDHVPVGVRVELINEPVKACIEPNGNRYLEVHDPLSTTAEQFNSHK 270 Query: 385 EVPVHF 390 VP+H Sbjct: 271 PVPIHI 276 >gi|323143884|ref|ZP_08078548.1| protein ErfK/srfK [Succinatimonas hippei YIT 12066] gi|322416356|gb|EFY07026.1| protein ErfK/srfK [Succinatimonas hippei YIT 12066] Length = 301 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 54/197 (27%), Gaps = 49/197 (24%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQKD 254 +++N L + V + + +G++ TP+ + + R P W + + Sbjct: 94 IIINSAEMRLYYYHDNVVDI-LPIGIGQLGTDTPLNWVTAVQRKKAGPTWTPTAKMHAE- 151 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 G N M + Sbjct: 152 ----------------------------------YRARGEYLPAVWPAGPDNPMGLYALY 177 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-----IE 369 H T F +R + GCVR+RN +L + P +R I+ Sbjct: 178 IGRLYAI--HGTNAD--FGIGLR-VSHGCVRLRNED--IEYLFNNVPVGTRVQFINRPIK 230 Query: 370 EVVKTRKTTPVKLATEV 386 ++ +++ + Sbjct: 231 YAIEDNGNIYIEVHQPL 247 >gi|317969713|ref|ZP_07971103.1| protein erfK/srfK precursor [Synechococcus sp. CB0205] Length = 201 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 45/175 (25%), Gaps = 71/175 (40%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L +++G++ R VG +TP R+ + P W P Sbjct: 67 RQLMVIKDGRMLHRYPAAVGTDGWETPAGSHRVLEKVAKPVWQHP--------------- 111 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY------ 316 G +V G N + S I F+ Sbjct: 112 -------------GNGSQV-------------------PQGPKNPLGSRWIGFHRNCTPK 139 Query: 317 ------------SRNNT-YMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 + H TP R + GCVR+ N+ ++ + Sbjct: 140 ENAWDGERYLSVNGCTVAGFHGTPHRWTVG---RAVSHGCVRLYEENVQEVFELV 191 >gi|126175624|ref|YP_001051773.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS155] gi|152999445|ref|YP_001365126.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS185] gi|217972124|ref|YP_002356875.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] gi|304411043|ref|ZP_07392659.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|307301834|ref|ZP_07581592.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] gi|125998829|gb|ABN62904.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS155] gi|151364063|gb|ABS07063.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS185] gi|217497259|gb|ACK45452.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] gi|304350578|gb|EFM14980.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|306913872|gb|EFN44293.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] Length = 304 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK + + +G++ + TP + + R NP W Sbjct: 94 PREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPR 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + + G N M Sbjct: 154 IRKE-----------------------------------YAAKGEILPAVWPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R + GCVR+R+ L K+ P +R Sbjct: 179 LYALYIGNLYAI--HGTNA--SFGIGLR-VSQGCVRLRHED--IEHLFKNVPVGTRVQFV 231 Query: 370 EV 371 Sbjct: 232 NQ 233 >gi|16129076|ref|NP_415631.1| L,D-transpeptidase linking Lpp to murein [Escherichia coli str. K-12 substr. MG1655] gi|89107959|ref|AP_001739.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|3025065|sp|P75954|YCFS_ECOLI RecName: Full=Probable L,D-transpeptidase YcfS; Flags: Precursor gi|1787356|gb|AAC74197.1| L,D-transpeptidase linking Lpp to murein [Escherichia coli str. K-12 substr. MG1655] gi|4062682|dbj|BAA35928.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] Length = 320 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 56/188 (29%), Gaps = 43/188 (22%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 98 DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + + G N Sbjct: 158 TANIRAR-----------------------------------YKAQGIELPAVVPAGLDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 M I + Y +H T F +R +SGC+R+R+ D+ + TP Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKV 238 Query: 366 YHIEEVVK 373 I +K Sbjct: 239 NIINTPIK 246 >gi|145298061|ref|YP_001140902.1| LysM domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850833|gb|ABO89154.1| LysM domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 302 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK V + +G++ TP +++ R NP W + Sbjct: 96 PREGIVINVAEMRLYYYPKGKNVVEVLPIGIGQLGVNTPENWITKVERKRANPTWTPTEN 155 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + + G N M Sbjct: 156 IRRR-----------------------------------YAAQGKTLPAVWPAGPDNPMG 180 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R +SGCVR+R D+ +L + P +R Sbjct: 181 LHALYIGNLYAI--HGTNA--TFGIGLR-VSSGCVRLR-ADDI-KYLFDNVPVGTRVQFV 233 Query: 370 EV 371 Sbjct: 234 NQ 235 >gi|24375244|ref|NP_719287.1| LysM domain-containing protein [Shewanella oneidensis MR-1] gi|24350038|gb|AAN56731.1|AE015808_7 LysM domain protein [Shewanella oneidensis MR-1] Length = 304 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK + + +G++ + TP + + R NP W Sbjct: 94 PREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPR 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + G N M Sbjct: 154 IRKE-----------------------------------YAARGEILPAVWPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R + GCVR+R+ D L K P +R Sbjct: 179 LYALYIGNLYAI--HGTNA--SFGIGLR-VSQGCVRLRH--DDIEHLFKTVPIGTRVQFV 231 Query: 370 EV 371 Sbjct: 232 NQ 233 >gi|291566539|dbj|BAI88811.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 543 Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 74/247 (29%), Gaps = 20/247 (8%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 T+A E I++R + P P L G+ V L+ RL G + + Sbjct: 44 TVASAESLTNRETQIVARATPTQNPTSPVLRRGSRGQDVAELQIRLRELGYFNNPNLGN- 102 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVD--------LRIRQLQVNLMRI 183 F + AV+ FQ GL P G+V T +A+ +P Q Sbjct: 103 -FGPITQQAVRQFQSDRGLRPDGIVGQETRQALALIPPSPKTPEVPTTPPPQPTATQPPP 161 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR----QTPILHSRINRIM 239 ++ N G ++ + + + +++ + Sbjct: 162 PATPPAAKPPAAKPPAAKPPAININYNLPKGFQTAIALLKNPSFVEAPPRDPSGKMSHVK 221 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF--VEEVDWNSPEPPNFI 297 + P+SI+ Q+ Y + I + D V + + ++ F Sbjct: 222 TITGPIAPKSIVHSGQGLFFAQNMMY--RHTITVYDRNFDLVKTIPDSIKFSDFGFSKFT 279 Query: 298 FRQDPGK 304 Sbjct: 280 GNHRGSP 286 >gi|307943635|ref|ZP_07658979.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307773265|gb|EFO32482.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 399 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 17/150 (11%) Query: 22 MGLSLVEKPIHASVLDEIINES-YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 L+ E ++ +D I + D + + + P K A + Sbjct: 143 FVLAFAENNLNQ--IDAFIRFLERSGLSQDLREADFEAIAR--RYNGPGQVKHYAALMRR 198 Query: 81 AIAFYQDILSRGGWPELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 A A GG + L LG+ V+ L++RL G G F Sbjct: 199 AYAKL------GGDQSDTHKDVNLLKLGSEGYRVEALQKRLASLGYTLRPDGD---FGPA 249 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + AV FQ+ HGL P G+V T EA+ Sbjct: 250 TKRAVVGFQVDHGLTPDGVVGPKTQEALEA 279 >gi|307943228|ref|ZP_07658573.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307774024|gb|EFO33240.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 399 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 13/164 (7%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-L 102 + ++ + + + P + + A YQ I G P L Sbjct: 162 KSGLADELRERDFRAIAR--RYNGPGQVSHYASLMQAA---YQRIGKSGETTSNPRGRML 216 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ V+ L+ERLI G F V FQ+ HGL P G+V T Sbjct: 217 RLGSEGYRVKALQERLITLGY---HLQADGDFGPATRRQVVAFQVDHGLKPDGVVGPLTE 273 Query: 163 ----EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 EA+ + + ++ + ++K Q + L Sbjct: 274 ERMDEAVPINASKIDGRTKLTVSDLRKRGSQTIKSADRLQQGAG 317 >gi|161503994|ref|YP_001571106.1| hypothetical protein SARI_02087 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865341|gb|ABX21964.1| hypothetical protein SARI_02087 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 306 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + G N M + Sbjct: 161 -----------------------------------YAAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 233 >gi|238893875|ref|YP_002918609.1| hypothetical protein KP1_1808 [Klebsiella pneumoniae NTUH-K2044] gi|238546191|dbj|BAH62542.1| hypothetical protein KP1_1808 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 358 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 153 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 212 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + G N M + Sbjct: 213 -----------------------------------YAAAGNPLPAVVPAGPDNPMGLYAL 237 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 238 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 285 >gi|117919296|ref|YP_868488.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. ANA-3] gi|117611628|gb|ABK47082.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. ANA-3] Length = 304 Score = 73.9 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 50/182 (27%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK + +G++ + TP + + R NP W Sbjct: 94 PREGIVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPR 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + G N M Sbjct: 154 IRKE-----------------------------------YAARGEILPAVWPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R + GCVR+R+ D L K P +R Sbjct: 179 LYALYIGNLYAI--HGTNA--SFGIGLR-VSQGCVRLRH--DDIEHLFKTVPVGTRVQFV 231 Query: 370 EV 371 Sbjct: 232 NQ 233 >gi|75911176|ref|YP_325472.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704901|gb|ABA24577.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 128 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ L G+S +V L+ L G + F A ++AV FQ +GL G Sbjct: 11 KVAEPLLRQGDSGAAVTELQRLLNAKG---VKVSVDGIFGAGTQAAVVKFQRANGLTADG 67 Query: 156 MVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 +V S T A+ +R+ + +N + Q L ++ IPAA+L Sbjct: 68 IVGSKTWVALRKVPTPTIRLVDVALNYDPTQ-FPHQVSALEWLQSQIPAATL 118 >gi|119773864|ref|YP_926604.1| ErfK/YbiS/YcfS/YnhG [Shewanella amazonensis SB2B] gi|119766364|gb|ABL98934.1| ErfK/YbiS/YcfS/YnhG [Shewanella amazonensis SB2B] Length = 304 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 54/188 (28%), Gaps = 44/188 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++NI L GK + + +G+V R TP + + R NP Sbjct: 88 LILPDAPREGIVINIAEMRLYYYPKGKKIVEVLPIGIGQVGRDTPENWVTTVQRKRANPT 147 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + I+K+ A G Sbjct: 148 WT-PTARIRKEYAAK----------------------------------GVTLPPVWPAG 172 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + H T F +R + GCVR+R+ L P Sbjct: 173 PDNPMGLFALYIGNLYAI--HGTNA--TFGIGLR-VSQGCVRLRDTD--IEHLFNSVPVG 225 Query: 364 SRYHIEEV 371 +R Sbjct: 226 TRVQFVNQ 233 >gi|114046387|ref|YP_736937.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. MR-7] gi|113887829|gb|ABI41880.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. MR-7] Length = 304 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 50/182 (27%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK + +G++ + TP + + R NP W Sbjct: 94 PREGIVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPR 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + G N M Sbjct: 154 IRKE-----------------------------------YAARGEILPAVWPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R + GCVR+R+ D L K P +R Sbjct: 179 LYALYIGNLYAI--HGTNA--SFGIGLR-VSQGCVRLRH--DDIEHLFKTVPVGTRVQFV 231 Query: 370 EV 371 Sbjct: 232 NQ 233 >gi|291085657|ref|ZP_06353628.2| ErfK/YbiS/YcfS/YnhG family protein [Citrobacter youngae ATCC 29220] gi|291070558|gb|EFE08667.1| ErfK/YbiS/YcfS/YnhG family protein [Citrobacter youngae ATCC 29220] Length = 329 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 124 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 183 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 184 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 208 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 209 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 256 >gi|113971426|ref|YP_735219.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. MR-4] gi|113886110|gb|ABI40162.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. MR-4] Length = 304 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 50/182 (27%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK + +G++ + TP + + R NP W Sbjct: 94 PREGIVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPR 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + G N M Sbjct: 154 IRKE-----------------------------------YAARGEILPAVWPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R + GCVR+R+ D L K P +R Sbjct: 179 LYALYIGNLYAI--HGTNA--SFGIGLR-VSQGCVRLRH--DDIEHLFKTVPVGTRVQFV 231 Query: 370 EV 371 Sbjct: 232 NQ 233 >gi|118579012|ref|YP_900262.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] gi|118501722|gb|ABK98204.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] Length = 441 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 44/202 (21%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG---KV 213 + + + A N VD + + ++ + + +++N+ L + +V Sbjct: 87 LGLNAISAANPGVDPWVPRAGERILLPLSFILPDAPRKGIVINLATMRLFHYKGSGTAQV 146 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V VG DR TP +R+ R P W +P SI ++ Sbjct: 147 VSTYPVGVGAEDRPTPPGPTRVVRKAAKPTWHVPASIAER-------------------- 186 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + PG N + + + +H T +P Sbjct: 187 ---------------HRMKGDILPASIPPGPDNPLGEYALYLG-KAGYLIHGTNKPASVG 230 Query: 334 NVVRFETSGCVRV--RNIIDLD 353 T+GC+R+ NI L Sbjct: 231 ---LQATNGCMRLYPENIKTLF 249 >gi|297158109|gb|ADI07821.1| hypothetical protein SBI_04701 [Streptomyces bingchenggensis BCW-1] Length = 207 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 4/144 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G SS V+ L+ RL G + + S+V +Q HGL +G VD T + Sbjct: 5 GTSSERVRELQARLRALGLFGRNPT--GYYGTVTRSSVLAYQRGHGLSATGSVDRRTWNS 62 Query: 165 MNVPVD--LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + R + K + M R + ++ + +L + NGKV V G Sbjct: 63 LRTATKRPTRDELYPPTTNPLAKPDPRCMTGRALCISKTSRTLAWMVNGKVVSAMDVRFG 122 Query: 223 RVDRQTPILHSRINRIMFNPYWVI 246 T +++ + I Sbjct: 123 SQYTPTREGLFQVDFKSRDHVSTI 146 >gi|157146538|ref|YP_001453857.1| hypothetical protein CKO_02299 [Citrobacter koseri ATCC BAA-895] gi|157083743|gb|ABV13421.1| hypothetical protein CKO_02299 [Citrobacter koseri ATCC BAA-895] Length = 306 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 233 >gi|218905286|ref|YP_002453120.1| hypothetical protein BCAH820_4170 [Bacillus cereus AH820] gi|228929197|ref|ZP_04092224.1| hypothetical protein bthur0010_38860 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947867|ref|ZP_04110154.1| hypothetical protein bthur0007_39940 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123670|ref|ZP_04252865.1| hypothetical protein bcere0016_39570 [Bacillus cereus 95/8201] gi|218537098|gb|ACK89496.1| conserved hypothetical protein [Bacillus cereus AH820] gi|228659805|gb|EEL15450.1| hypothetical protein bcere0016_39570 [Bacillus cereus 95/8201] gi|228811854|gb|EEM58188.1| hypothetical protein bthur0007_39940 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830487|gb|EEM76097.1| hypothetical protein bthur0010_38860 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 186 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L + G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGENPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|120597701|ref|YP_962275.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. W3-18-1] gi|146294162|ref|YP_001184586.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella putrefaciens CN-32] gi|120557794|gb|ABM23721.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. W3-18-1] gi|145565852|gb|ABP76787.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella putrefaciens CN-32] gi|319427505|gb|ADV55579.1| L,D-transpeptidase, YbiS [Shewanella putrefaciens 200] Length = 304 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK + + +G++ + TP + + R NP W Sbjct: 94 PREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPR 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + + G N M Sbjct: 154 IRKE-----------------------------------YAAKGEILPAVWPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R + GCVR+R+ L K P +R Sbjct: 179 LYALYIGNLYAI--HGTNA--SFGIGLR-VSQGCVRLRHED--IEHLFKTVPVGTRVQFV 231 Query: 370 EV 371 Sbjct: 232 NQ 233 >gi|237730798|ref|ZP_04561279.1| protein ybiS [Citrobacter sp. 30_2] gi|226906337|gb|EEH92255.1| protein ybiS [Citrobacter sp. 30_2] Length = 306 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNA--NFGVGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 233 >gi|283784580|ref|YP_003364445.1| hypothetical protein ROD_08211 [Citrobacter rodentium ICC168] gi|282948034|emb|CBG87598.1| putative exported protein [Citrobacter rodentium ICC168] Length = 306 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 233 >gi|206576156|ref|YP_002239536.1| YbiS protein [Klebsiella pneumoniae 342] gi|290510562|ref|ZP_06549932.1| L,D-transpeptidase YbiS [Klebsiella sp. 1_1_55] gi|206565214|gb|ACI06990.1| YbiS protein [Klebsiella pneumoniae 342] gi|289777278|gb|EFD85276.1| L,D-transpeptidase YbiS [Klebsiella sp. 1_1_55] Length = 304 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 99 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + G N M + Sbjct: 159 -----------------------------------YAAAGNPLPAVVPAGPDNPMGLYAL 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 231 >gi|160874063|ref|YP_001553379.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS195] gi|160859585|gb|ABX48119.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS195] gi|315266295|gb|ADT93148.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS678] Length = 304 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 44/182 (24%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N+ L GK + + +G++ + TP + + R NP W Sbjct: 94 PREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPR 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I ++ + + G N M Sbjct: 154 IRKE-----------------------------------YAAKGEILPAVWPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T F +R + GCVR+R+ L K P +R Sbjct: 179 LYALYIGNLYAI--HGTNA--SFGIGLR-VSQGCVRLRHED--IEHLFKTVPVGTRVQFV 231 Query: 370 EV 371 Sbjct: 232 NQ 233 >gi|304313391|ref|YP_003812989.1| hypothetical protein HDN1F_37840 [gamma proteobacterium HdN1] gi|301799124|emb|CBL47367.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 368 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 39/160 (24%) Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 V + R + TP+ +++ + +P W +P+SI ++ A + P Y Sbjct: 126 TFPVSIARENWATPLGTTKVTGLFKDPAWFVPKSIQEEHKAAGEVEFPTYF--------- 176 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 PG N M I+ ++H T P Sbjct: 177 -------------------------PPGPNNPMGMLAIQLGFP-GIFIHGTNRPW--GVG 208 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 +R + GC+ + D + I+E V Sbjct: 209 MRT-SHGCLHLY-PEDAANIFPQLKAGVPVRVIDEPVVAG 246 >gi|221214643|ref|ZP_03587613.1| putative peptidoglycan binding domain protein [Burkholderia multivorans CGD1] gi|221165533|gb|EED98009.1| putative peptidoglycan binding domain protein [Burkholderia multivorans CGD1] Length = 266 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 3/114 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V L+ +LI +G + + AV FQ HGL G+ Sbjct: 3 KTLRLGDRGADVAYLQRQLIAAG---ARIDADALYGSATRGAVVAFQASHGLVADGIAGP 59 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 T A+ +L R L+ + + + + + +G+ Sbjct: 60 KTWAALAAGRRDPRHLTDADLQRAADRLKVDLAAVRAVNEVESRGAGFLPDGRP 113 >gi|311067920|ref|YP_003972843.1| murein transglycosylase [Bacillus atrophaeus 1942] gi|310868437|gb|ADP31912.1| murein transglycosylase [Bacillus atrophaeus 1942] Length = 168 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 13/149 (8%) Query: 217 STVIVGRVDRQTPILHSRI---NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 + + R P L + I +I+ P P SI ++++ + + ++N + Sbjct: 22 FRIDQAALVRANPSLQTGILLAGQIIVIPGIPNPDSIPYHIVVSISGKTLRLFQNNRLI- 80 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 K + V ++ +P +I + P + + + +H T P Sbjct: 81 ---KTYPIAVGKILTTTPTGEYYIVNRQPNPGGPFGAYWMSLSKLH-YGIHGTNNPSSIG 136 Query: 334 NVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + GC+R+ N +++L + T Sbjct: 137 K---AVSKGCIRMYNKDVVELASIVPNGT 162 >gi|118479343|ref|YP_896494.1| hypothetical protein BALH_3760 [Bacillus thuringiensis str. Al Hakam] gi|118418568|gb|ABK86987.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] Length = 188 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 19 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 74 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 75 -----------------AKDPYYIAKN------------------------------IPG 87 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 88 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 142 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 143 DRIPIGTKVWIVKSKKSFQ 161 >gi|54297508|ref|YP_123877.1| hypothetical protein lpp1553 [Legionella pneumophila str. Paris] gi|53751293|emb|CAH12704.1| hypothetical protein lpp1553 [Legionella pneumophila str. Paris] Length = 244 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + V++N+ L + V + V +G+ +TP+ SRI NP W Sbjct: 93 NVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRITSKEINPTWRPTV 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + PG N + Sbjct: 153 K------LQKAAESIGA-----------------------------PIPSEFPPGPHNPL 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H + ++GC+R+ +I L + TP Sbjct: 178 GQHVLRLGWP-AILIHGSNRVDGIGAK---VSAGCIRMLPEDIEHLYSLVSVGTP 228 >gi|223937774|ref|ZP_03629675.1| ErfK/YbiS/YcfS/YnhG family protein [bacterium Ellin514] gi|223893567|gb|EEF60027.1| ErfK/YbiS/YcfS/YnhG family protein [bacterium Ellin514] Length = 393 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 79/270 (29%), Gaps = 53/270 (19%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE--AMNVPVDLRIRQLQVNLMRI 183 S ++A+ +Q + L +G +D+ T + ++ +L R+ Sbjct: 128 SSGSADGVSGFQTKAALMAYQRQSHLPINGELDALTKTNLLLEDTPFVKYLITSNDLARL 187 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + +G +E V + S + +++ P ++ + Sbjct: 188 QPVATTWLGKSQQTALDYENIVELVA--EKSFASPTFIRKLN---PNINW--TNVTPGTL 240 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK------------------------ 279 +P S ++ + +L + D + Sbjct: 241 VQVPNS-YYPEVHSKAAFLRIHLSGKTLEAFDSETNLLVHFPCSIAKRVEKRPVGELHVA 299 Query: 280 EVFVEEVDWNSPEPPNFI-----------FRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 V + +P F PG N + I R +H TP+ Sbjct: 300 VVAPNPN--YTFDPAIFPESPEAQSIGHKLVLPPGPNNPVGVAWIGL-DRQGYGIHGTPK 356 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 P R E+ GC R+ N +L+K Sbjct: 357 PEEVG---RTESHGCFRLANWN--AEYLIK 381 >gi|49480911|ref|YP_038213.1| ErfK/SrfK protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332467|gb|AAT63113.1| conserved hypothetical protein, possible ErfK/SrfK protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 186 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 ++P Y+ N Sbjct: 73 -----------------AKNPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|152969406|ref|YP_001334515.1| hypothetical protein KPN_00849 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262041092|ref|ZP_06014310.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330008437|ref|ZP_08306249.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] gi|150954255|gb|ABR76285.1| hypothetical protein KPN_00849 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259041542|gb|EEW42595.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328535134|gb|EGF61643.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] Length = 304 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 99 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + G N M + Sbjct: 159 -----------------------------------YAAAGNPLPAVVPAGPDNPMGLYAL 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 231 >gi|30264225|ref|NP_846602.1| hypothetical protein BA_4372 [Bacillus anthracis str. Ames] gi|47529667|ref|YP_021016.1| hypothetical protein GBAA_4372 [Bacillus anthracis str. 'Ames Ancestor'] gi|49187053|ref|YP_030305.1| hypothetical protein BAS4055 [Bacillus anthracis str. Sterne] gi|52141347|ref|YP_085481.1| erfK/srfK protein [Bacillus cereus E33L] gi|165871099|ref|ZP_02215749.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167639420|ref|ZP_02397691.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170687312|ref|ZP_02878530.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170705833|ref|ZP_02896296.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177652648|ref|ZP_02935064.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190566228|ref|ZP_03019147.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|196034816|ref|ZP_03102223.1| conserved hypothetical protein [Bacillus cereus W] gi|227816926|ref|YP_002816935.1| hypothetical protein BAMEG_4409 [Bacillus anthracis str. CDC 684] gi|229093210|ref|ZP_04224328.1| hypothetical protein bcere0021_39450 [Bacillus cereus Rock3-42] gi|229600370|ref|YP_002868445.1| hypothetical protein BAA_4391 [Bacillus anthracis str. A0248] gi|254683915|ref|ZP_05147775.1| hypothetical protein BantC_08690 [Bacillus anthracis str. CNEVA-9066] gi|254721750|ref|ZP_05183539.1| hypothetical protein BantA1_04685 [Bacillus anthracis str. A1055] gi|254736263|ref|ZP_05193969.1| hypothetical protein BantWNA_13971 [Bacillus anthracis str. Western North America USA6153] gi|254754065|ref|ZP_05206100.1| hypothetical protein BantV_16420 [Bacillus anthracis str. Vollum] gi|254758242|ref|ZP_05210269.1| hypothetical protein BantA9_08030 [Bacillus anthracis str. Australia 94] gi|301055643|ref|YP_003793854.1| ErfK/SrfK protein [Bacillus anthracis CI] gi|30258870|gb|AAP28088.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47504815|gb|AAT33491.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180980|gb|AAT56356.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|51974816|gb|AAU16366.1| conserved hypothetical protein; possible erfK/srfK protein [Bacillus cereus E33L] gi|164713018|gb|EDR18545.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167512479|gb|EDR87854.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170129373|gb|EDS98237.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170668929|gb|EDT19674.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172081983|gb|EDT67051.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190563147|gb|EDV17113.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|195992355|gb|EDX56316.1| conserved hypothetical protein [Bacillus cereus W] gi|227003866|gb|ACP13609.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|228690184|gb|EEL43978.1| hypothetical protein bcere0021_39450 [Bacillus cereus Rock3-42] gi|229264778|gb|ACQ46415.1| conserved hypothetical protein [Bacillus anthracis str. A0248] gi|300377812|gb|ADK06716.1| conserved hypothetical ErfK/SrfK protein [Bacillus cereus biovar anthracis str. CI] Length = 186 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|330839341|ref|YP_004413921.1| NLP/P60 protein [Selenomonas sputigena ATCC 35185] gi|329747105|gb|AEC00462.1| NLP/P60 protein [Selenomonas sputigena ATCC 35185] Length = 220 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +G+ V ++ RL G F AVK FQ HGL+ G+V Sbjct: 23 ASAFRIGDQGSDVAEIQGRLASLGY---DVAADGDFGPATAEAVKAFQSAHGLEADGLVG 79 Query: 159 SSTLEAM 165 S+T A+ Sbjct: 80 SATYSAL 86 >gi|260886859|ref|ZP_05898122.1| endopeptidase, cell wall lytic activity [Selenomonas sputigena ATCC 35185] gi|260863458|gb|EEX77958.1| endopeptidase, cell wall lytic activity [Selenomonas sputigena ATCC 35185] Length = 216 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +G+ V ++ RL G F AVK FQ HGL+ G+V Sbjct: 19 ASAFRIGDQGSDVAEIQGRLASLGY---DVAADGDFGPATAEAVKAFQSAHGLEADGLVG 75 Query: 159 SSTLEAM 165 S+T A+ Sbjct: 76 SATYSAL 82 >gi|225866132|ref|YP_002751510.1| hypothetical protein BCA_4259 [Bacillus cereus 03BB102] gi|229186394|ref|ZP_04313558.1| hypothetical protein bcere0004_39390 [Bacillus cereus BGSC 6E1] gi|225788457|gb|ACO28674.1| conserved hypothetical protein [Bacillus cereus 03BB102] gi|228597021|gb|EEK54677.1| hypothetical protein bcere0004_39390 [Bacillus cereus BGSC 6E1] Length = 186 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|253702665|ref|YP_003023854.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M21] gi|251777515|gb|ACT20096.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M21] Length = 409 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 69/210 (32%), Gaps = 44/210 (20%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE---NGKV 213 + + + A N VD+ + + ++ + + +++N+ L + G+V Sbjct: 56 LGINAISAANPGVDVWVPEPGKEIILPLSFILPDAPRKGIVINLATMRLFRFKEDSKGQV 115 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V VG +R TP R+ R P W +P SI + Sbjct: 116 VSTYPVGVGTAERPTPTGKMRVERKTALPTWYVPASIAED-------------------- 155 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + + PG N + + + +H T +P Sbjct: 156 ---------------HKKKGDLLPAKVPPGPENPLGERALYLS-KAGYLIHGTNKPASIG 199 Query: 334 NVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 T+GC+R+ N++ L +TP Sbjct: 200 ---LKATNGCLRLYPENVMTLYEETPVNTP 226 >gi|302391951|ref|YP_003827771.1| ErfK/YbiS/YcfS/YnhG family protein [Acetohalobium arabaticum DSM 5501] gi|302204028|gb|ADL12706.1| ErfK/YbiS/YcfS/YnhG family protein [Acetohalobium arabaticum DSM 5501] Length = 312 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 72/253 (28%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + L+ L G D L+ ++ AVK FQ + L +G+V+ S + + Sbjct: 45 MEGNDIWELQRELKKLGFYDQQ--LNSTYNWSTYLAVKEFQKANDLPTTGVVNESIWQQI 102 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 + + + + + E G ++L++ + +G+ V VG+ Sbjct: 103 AHKLKKGEKITEASSDDL----EAPEGEVFLLIDTYKKKMTVYSDGEPYHEFPVAVGKPS 158 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 ++PI I I + +W G Sbjct: 159 TKSPIGEWAI--IAKDAHWG-----------------------------GGFGVRWMRLN 187 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 V W I ++ P + GC+R Sbjct: 188 VPW--------------------GIFGIHGTNK----------PGSIGT---AASHGCIR 214 Query: 346 VRN--IIDLDVWL 356 + N + L W+ Sbjct: 215 MYNRHVKILYSWV 227 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V +E+L G F E A+K F+ +GL D +T Sbjct: 248 LRPGQTGKDVLLFQEKLREYGF--DPGYTDGRFGDSTEKAIKEFKYIYGLQDDLTADQNT 305 Query: 162 L 162 Sbjct: 306 F 306 >gi|171914584|ref|ZP_02930054.1| hypothetical protein VspiD_25435 [Verrucomicrobium spinosum DSM 4136] Length = 327 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 69/228 (30%), Gaps = 58/228 (25%) Query: 136 AYVESAV--------KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL- 186 A + AV K F+ +G L+ + + ++ VN ++ Sbjct: 132 ASLVEAVAEKFHCDEKFFRQLNGGKTDA------LKEGDEVLVPKVEPFDVNTVKTFAPG 185 Query: 187 --LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + + G V V LE V+ K+ V +G + TP I + Sbjct: 186 HAMPEGQGKTLVRVLSSNNMLEVVQGDKIAAAFPVTIGSTETGTPTGIWTIEGM------ 239 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + R+D + LK+ F+ PG Sbjct: 240 ---------ERFPKFRRDEKMLKEG---------------------ERSGKFLMI-PPGP 268 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 N + IE R +H T P R ++ GC+R+ N L Sbjct: 269 NNDVGVIWIEL-DRKGLGIHGTKAPDSIG---RADSHGCIRLANWDVL 312 >gi|197263123|ref|ZP_03163197.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241378|gb|EDY23998.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 306 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 233 >gi|24112186|ref|NP_706696.1| hypothetical protein SF0769 [Shigella flexneri 2a str. 301] gi|30062302|ref|NP_836473.1| hypothetical protein S0812 [Shigella flexneri 2a str. 2457T] gi|110804818|ref|YP_688338.1| hypothetical protein SFV_0802 [Shigella flexneri 5 str. 8401] gi|24051026|gb|AAN42403.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30040547|gb|AAP16279.1| hypothetical protein S0812 [Shigella flexneri 2a str. 2457T] gi|110614366|gb|ABF03033.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281600144|gb|ADA73128.1| hypothetical protein SFxv_0839 [Shigella flexneri 2002017] gi|332763026|gb|EGJ93271.1| hypothetical protein SFK671_0892 [Shigella flexneri K-671] Length = 306 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVEHKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|213051893|ref|ZP_03344771.1| hypothetical protein Salmoneentericaenterica_02525 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 306 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 233 >gi|168263654|ref|ZP_02685627.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347721|gb|EDZ34352.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 306 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 233 >gi|194444059|ref|YP_002040076.1| hypothetical protein SNSL254_A0905 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402722|gb|ACF62944.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 306 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 233 >gi|16759756|ref|NP_455373.1| hypothetical protein STY0878 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764199|ref|NP_459814.1| hypothetical protein STM0837 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142471|ref|NP_805813.1| hypothetical protein t2050 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179404|ref|YP_215821.1| hypothetical protein SC0834 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614906|ref|YP_001588871.1| hypothetical protein SPAB_02660 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550465|ref|ZP_02344222.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992079|ref|ZP_02573177.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230745|ref|ZP_02655803.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168240711|ref|ZP_02665643.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168466444|ref|ZP_02700306.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820007|ref|ZP_02832007.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450082|ref|YP_002044868.1| hypothetical protein SeHA_C0968 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469167|ref|ZP_03075151.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197250503|ref|YP_002145796.1| hypothetical protein SeAg_B0877 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390414|ref|ZP_03217025.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930038|ref|ZP_03221059.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352092|ref|YP_002225893.1| hypothetical protein SG0816 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856273|ref|YP_002242924.1| hypothetical protein SEN0782 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213428081|ref|ZP_03360831.1| hypothetical protein SentesTyphi_22365 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213613157|ref|ZP_03370983.1| hypothetical protein SentesTyp_11989 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648360|ref|ZP_03378413.1| hypothetical protein SentesTy_14384 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213850213|ref|ZP_03381111.1| hypothetical protein SentesT_00923 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582650|ref|YP_002636448.1| hypothetical protein SPC_0835 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913904|ref|ZP_04657741.1| hypothetical protein SentesTe_22615 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825093|ref|ZP_06544440.1| hypothetical protein Salmonellentericaenterica_07151 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25323526|pir||AC0602 probable exported protein ybiS [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419343|gb|AAL19773.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502049|emb|CAD05285.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138102|gb|AAO69673.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62127037|gb|AAX64740.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364270|gb|ABX68038.1| hypothetical protein SPAB_02660 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408386|gb|ACF68605.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455531|gb|EDX44370.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195630971|gb|EDX49557.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214206|gb|ACH51603.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199602859|gb|EDZ01405.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321032|gb|EDZ06233.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271873|emb|CAR36710.1| putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324612|gb|EDZ12451.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329651|gb|EDZ16415.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334655|gb|EDZ21419.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339814|gb|EDZ26578.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343225|gb|EDZ29989.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708076|emb|CAR32367.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467177|gb|ACN45007.1| hypothetical protein SPC_0835 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246093|emb|CBG23896.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992589|gb|ACY87474.1| hypothetical protein STM14_977 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157421|emb|CBW16910.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911861|dbj|BAJ35835.1| hypothetical protein STMDT12_C08920 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085112|emb|CBY94899.1| Uncharacterized protein ybiS Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616313|gb|EFY13222.1| hypothetical protein SEEM315_11928 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619563|gb|EFY16438.1| hypothetical protein SEEM971_16922 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622741|gb|EFY19586.1| hypothetical protein SEEM973_14035 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628653|gb|EFY25440.1| hypothetical protein SEEM974_17673 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631590|gb|EFY28346.1| hypothetical protein SEEM201_21188 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637117|gb|EFY33820.1| hypothetical protein SEEM202_02640 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641684|gb|EFY38320.1| hypothetical protein SEEM954_16820 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644522|gb|EFY41062.1| hypothetical protein SEEM054_05584 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648456|gb|EFY44908.1| hypothetical protein SEEM675_16963 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654191|gb|EFY50514.1| hypothetical protein SEEM965_13287 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658106|gb|EFY54373.1| hypothetical protein SEEM19N_19611 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663580|gb|EFY59782.1| hypothetical protein SEEM801_12442 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670316|gb|EFY66456.1| hypothetical protein SEEM507_19219 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671552|gb|EFY67674.1| hypothetical protein SEEM877_10228 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676908|gb|EFY72975.1| hypothetical protein SEEM867_08376 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682833|gb|EFY78852.1| hypothetical protein SEEM180_07427 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686512|gb|EFY82494.1| hypothetical protein SEEM600_06405 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713875|gb|EFZ05446.1| putative L,D-transpeptidase YbiS [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129143|gb|ADX16573.1| putative L,D-transpeptidase YbiS [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194591|gb|EFZ79784.1| hypothetical protein SEEM581_07814 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196819|gb|EFZ81963.1| hypothetical protein SEEM501_08457 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204830|gb|EFZ89825.1| hypothetical protein SEEM460_08124 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208941|gb|EFZ93878.1| hypothetical protein SEEM020_19505 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213926|gb|EFZ98696.1| hypothetical protein SEEM6152_16220 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215222|gb|EFZ99967.1| hypothetical protein SEEM0077_11173 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220858|gb|EGA05296.1| hypothetical protein SEEM0047_18284 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229900|gb|EGA14023.1| hypothetical protein SEEM0052_13717 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233125|gb|EGA17221.1| hypothetical protein SEEM3312_03669 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240860|gb|EGA24902.1| hypothetical protein SEEM5258_13279 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243177|gb|EGA27197.1| hypothetical protein SEEM1156_06206 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248716|gb|EGA32644.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251720|gb|EGA35587.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257532|gb|EGA41220.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261465|gb|EGA45046.1| hypothetical protein SEEM8284_13299 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267896|gb|EGA51375.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272037|gb|EGA55452.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326627133|gb|EGE33476.1| Putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987768|gb|AEF06751.1| hypothetical protein STMUK_0842 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 306 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 233 >gi|168236775|ref|ZP_02661833.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734785|ref|YP_002113930.1| hypothetical protein SeSA_A0989 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710287|gb|ACF89508.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290178|gb|EDY29535.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 306 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 233 >gi|313650280|gb|EFS14692.1| hypothetical protein SF2457T_1286 [Shigella flexneri 2a str. 2457T] gi|332759725|gb|EGJ90028.1| hypothetical protein SF434370_1017 [Shigella flexneri 4343-70] gi|332760500|gb|EGJ90789.1| hypothetical protein SF274771_0928 [Shigella flexneri 2747-71] gi|333006612|gb|EGK26111.1| hypothetical protein SFVA6_1243 [Shigella flexneri VA-6] gi|333006979|gb|EGK26474.1| hypothetical protein SFK218_1151 [Shigella flexneri K-218] gi|333009550|gb|EGK29002.1| hypothetical protein SFK272_1177 [Shigella flexneri K-272] gi|333020479|gb|EGK39742.1| hypothetical protein SFK227_0993 [Shigella flexneri K-227] gi|333021026|gb|EGK40284.1| hypothetical protein SFK304_1007 [Shigella flexneri K-304] Length = 304 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ P W + + Sbjct: 99 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVEHKKAGPTWTPTAKMHAE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 159 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 231 >gi|332711428|ref|ZP_08431360.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349977|gb|EGJ29585.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 269 Score = 73.1 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G +VQ+L+ RL G L + F ++AV+ Q + L+P G+V +T Sbjct: 206 LRQGMRGPAVQQLQRRLKSLGFLK--ATVDGVFGEVTKAAVQAAQRKFKLEPDGIVGPAT 263 Query: 162 LEAM 165 A+ Sbjct: 264 WNAL 267 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 48/182 (26%), Gaps = 10/182 (5%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + ++ L +G+ V L+ L + G ++ + AV Q Sbjct: 39 KLAQAITPVKINRPTLDIGSEGERVSELQAVLKLLGYYTGE--VNGFYGDNTAIAVSKLQ 96 Query: 147 MRHGLDPSGMVDSSTLEAM--NVPVDLRIRQLQVNLMR--IKKLLEQKMGLRYVLVNIPA 202 GL P G++ ++ + ++P + N + + G+ P Sbjct: 97 REAGLTPHGIMGAAEWNLLFPSIPPNPTSSTSTSNPLPSASRTPPTTSDGISASSFPTP- 155 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 E + T + S I ++ + Sbjct: 156 ---SITEAITQTTTTRPNPSSPATSTSFGNRTTTTGNSVTVERTKPSAITLPILRQGMRG 212 Query: 263 PQ 264 P Sbjct: 213 PA 214 >gi|321226415|gb|EFX51466.1| L,D-transpeptidase YbiS [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 246 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 233 >gi|332767984|gb|EGJ98170.1| L,D-transpeptidase YbiS [Shigella flexneri 2930-71] Length = 302 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 46/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ P W + + Sbjct: 97 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVEHKKAGPTWTPTAKMHAE 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 157 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 181 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 182 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 229 >gi|228916787|ref|ZP_04080352.1| hypothetical protein bthur0012_40010 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842974|gb|EEM88057.1| hypothetical protein bthur0012_40010 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 186 Score = 73.1 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|224825429|ref|ZP_03698534.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] gi|224602350|gb|EEG08528.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] Length = 348 Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 47/195 (24%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAV------ENGKVGLRSTVIVGRVDRQTPILHSRI 235 R L + V++NIP L + + + + + R TP+ +RI Sbjct: 85 RQFILPPKPWQG--VVLNIPQRRLYYFPATTKGQPPQQVITYPISIAREGWSTPLGATRI 142 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 +P W +P+SI + + + P+Y Sbjct: 143 KAKFKDPAWFVPKSIRDEHLREDGVELPEYF----------------------------- 173 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 PG N M ++ ++H T P +R + GC+ + D Sbjct: 174 -----PPGPDNPMGMLAMQTGFP-GIFIHATNRPW--GVGLRT-SHGCLHLY-PEDAAQI 223 Query: 356 LLKDTPTWSRYHIEE 370 + I+E Sbjct: 224 FPQMKVGTPVRVIDE 238 >gi|229031796|ref|ZP_04187785.1| hypothetical protein bcere0028_38450 [Bacillus cereus AH1271] gi|228729542|gb|EEL80530.1| hypothetical protein bcere0028_38450 [Bacillus cereus AH1271] Length = 186 Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + ++ + Sbjct: 141 DRIPIGTKVWIVKSKQSFQ 159 >gi|300863516|ref|ZP_07108468.1| putative Peptidoglycan-binding domain 1 [Oscillatoria sp. PCC 6506] gi|300338472|emb|CBN53610.1| putative Peptidoglycan-binding domain 1 [Oscillatoria sp. PCC 6506] Length = 224 Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 21/153 (13%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 EK + + + F+ D G +S + Q K + Sbjct: 77 EKTVSKGAKGAEVAAIQKRLQAHGFNVGAIDSDFGSR----TVSAVSAFQQSKGL-KADG 131 Query: 88 ILSRGGWPEL--------------PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 I+ R W L + L G + V+ L+ RL + G + Sbjct: 132 IVDRTTWDALKDEPMVLAQKQIPESSKVLAKGAAGSKVKTLQVRLEMQGY--DPGPIDGI 189 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F A +AVK FQ + L G VD +T +A+ Sbjct: 190 FGARTLTAVKDFQATNNLKVDGTVDEATWKALG 222 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 YQ + P + + G V +++RL G + F + SAV Sbjct: 67 YQGLQE----PPKKEKTVSKGAKGAEVAAIQKRLQAHGF--NVGAIDSDFGSRTVSAVSA 120 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 FQ GL G+VD +T +A+ + ++ Sbjct: 121 FQQSKGLKADGIVDRTTWDALKDEPMVLAQK 151 >gi|251790932|ref|YP_003005653.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] gi|247539553|gb|ACT08174.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] Length = 358 Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 81/280 (28%), Gaps = 67/280 (23%) Query: 124 LDPSKGLSVAFDAYVE--------SAVKLF--QMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 S ++ A++ F Q + GL L N +D+ + Sbjct: 27 YPLPAPNSRLVGENLQVTIPSDSTDALEHFAAQYQMGLSN--------LLEANPGIDVYL 78 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-L 231 + + ++L+ +++N L G K + + +G++ + TPI Sbjct: 79 PKPGSTMTVPQQLILPDTPREGIVINSAEMRLYYFPKGSKTVVVLPIGIGQLGKDTPINW 138 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 + + R P W ++ + Y Sbjct: 139 VTSVQRKKERPTWTPTAAMHAE-----------YAARGEF-------------------- 167 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 G N M + + H T F +R + GCVR+R+ Sbjct: 168 ----LPKVYPAGPDNPMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLRDKD- 217 Query: 352 LDVWLLKDTPTWSR-----YHIEEVVKTRKTTPVKLATEV 386 +L P +R ++ V+ + V++ + Sbjct: 218 -IKYLFDHVPVGTRVQFINEPVKATVEPDGSRYVEVHNPL 256 >gi|114567403|ref|YP_754557.1| ErfK/YbiS/YcfS/YnhG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338338|gb|ABI69186.1| ErfK/YbiS/YcfS/YnhG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 332 Score = 72.8 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 24/205 (11%) Query: 89 LSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + R +P L PL G S V ++ RL G S ++ ++LFQ+ Sbjct: 51 IDRTDFPSLFLAEPLLEGES---VWLVQARLKELGY---DIQPSGIYNLPTSQIIRLFQV 104 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 GL+ +G+V+ EA+ D LQ + + G + +++ + L Sbjct: 105 ASGLEENGVVNRPVWEALLFS-DAGEPCLQGDSQDKR-------GRLLIEIDVASRKLVL 156 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN------PYW---VIPRSIIQKDMMAL 258 E+GK+ V VG+ TP+ ++ N W +P I Sbjct: 157 TEDGKLVKEYPVAVGKSKTPTPLGEWKVVHKGLNWGNGFGTRWMGLNVPWGIYGIHGTNK 216 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFV 283 Y I M + +E++ Sbjct: 217 PGSIGSYASHGCIRMFNRHVEELYP 241 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 N + + Y +H T +P + + + GC+R+ N + +L + T Sbjct: 192 GNGFGTRWMGLNVPWGIYGIHGTNKPGSIGS---YASHGCIRMFNRHVEELYPLVPAGT 247 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 73 ETIAQTEKAIAFYQDILSRGG-WPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 E + A + I+ G +P+ L L +S V ++ RL G Sbjct: 237 EELYPLVPAGTRVR-IVENGKMFPQDLKPVLLKKNSSGQRVVYVQSRLKELGL--EFDRA 293 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + E AVK FQ GL+ +G +D +T AM + Sbjct: 294 DGRYGNMTELAVKYFQAWRGLEATGEMDEATYRAMGM 330 >gi|149186655|ref|ZP_01864966.1| hypothetical protein ED21_29191 [Erythrobacter sp. SD-21] gi|148829563|gb|EDL48003.1| hypothetical protein ED21_29191 [Erythrobacter sp. SD-21] Length = 406 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 42/175 (24%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + ++V+ +L A ++ K+ TV G + PI I I NP + Sbjct: 266 SDQPQVDRIVVSKSEDTLRAYQDDKLVALFTVSSGSSEFPLPIGEWDILGIAQNPPF--- 322 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 D + + + + + PG Sbjct: 323 ------DYDPRVLEGDDDAEGESYTL---------------------------PPGPNGP 349 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID--LDVWLLKDT 360 + I+ + +H TPEP R ++ GCVR+ N L + + T Sbjct: 350 VGVVWIDLSKEH-YGIHGTPEPQTIG---RAQSHGCVRLTNWDAARLARMVSQST 400 >gi|56414064|ref|YP_151139.1| hypothetical protein SPA1916 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362987|ref|YP_002142624.1| hypothetical protein SSPA1786 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128321|gb|AAV77827.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094464|emb|CAR59980.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 306 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHTE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 233 >gi|83588974|ref|YP_428983.1| ErfK/YbiS/YcfS/YnhG [Moorella thermoacetica ATCC 39073] gi|83571888|gb|ABC18440.1| ErfK/YbiS/YcfS/YnhG [Moorella thermoacetica ATCC 39073] Length = 294 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P PL G S V L+ RL G + E AVK FQ+ HGL +G Sbjct: 217 TMPTGPLKPGQGSPEVITLQARLREKGFYLF-GPTDGDYGLMTELAVKEFQLYHGLTATG 275 Query: 156 MVDSSTLEAMNVPV 169 + D+ TL A+ V Sbjct: 276 VADARTLRALGFDV 289 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 21/207 (10%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + + V L+ RL G L+ ++ + AV FQ H L P G V +T + + Sbjct: 28 TGLDVSDLQLRLAQMGYY--FGPLNGIYNKTTQRAVINFQREHHLTPLGRVGPATWKEL- 84 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 R + V ++++ L + +G+V + V +G+ Sbjct: 85 ------ARGIAVAHQAPAGPPPG--KNLKIVIDTERLVLTILVDGRVFQKYPVAIGKYTS 136 Query: 227 QTPILHSRINRI------MFNPYW---VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 +P+ +I F W +P M +E Sbjct: 137 PSPVGEWKIVDKAYESGGAFGTRWMGLNVPWGNYGIHGTNRPWSIGWAASAGCFRMFNED 196 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + ++ + +P + G Sbjct: 197 IETIYPW-IPVGTPVVVKGPYTMPTGP 222 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 40/151 (26%), Gaps = 14/151 (9%) Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 +GRV T +R + P K ++ R L D + Sbjct: 68 HHLTPLGRVGPATWKELARGIAVAHQAPAGPPPGKNLKIVIDTERLVLTILVDGRVFQKY 127 Query: 276 --EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILF 332 GK V + A + + +H T P Sbjct: 128 PVAIGKYTSPSPVGEWKIVDKAYE------SGGAFGTRWMGLNVPWGNYGIHGTNRPWSI 181 Query: 333 NNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++GC R+ +I + W+ TP Sbjct: 182 GW---AASAGCFRMFNEDIETIYPWIPVGTP 209 >gi|218548340|ref|YP_002382131.1| hypothetical protein EFER_0962 [Escherichia fergusonii ATCC 35469] gi|218355881|emb|CAQ88496.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] gi|324112743|gb|EGC06719.1| ykud domain-containing protein [Escherichia fergusonii B253] gi|325496754|gb|EGC94613.1| hypothetical protein ECD227_0851 [Escherichia fergusonii ECD227] Length = 306 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRNED--IKFLFEQVPVGTRVQF 233 >gi|167633509|ref|ZP_02391833.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|254744152|ref|ZP_05201835.1| hypothetical protein BantKB_24635 [Bacillus anthracis str. Kruger B] gi|167530915|gb|EDR93602.1| conserved hypothetical protein [Bacillus anthracis str. A0442] Length = 186 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 65/200 (32%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N P Sbjct: 73 -----------------AKDPYYIAKN-------------------------------IP 84 Query: 303 G--KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 85 GESPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYL 139 Query: 357 LKDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 140 FDRIPIGTKVWIVKSKKSFQ 159 >gi|328952431|ref|YP_004369765.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] gi|328452755|gb|AEB08584.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] Length = 314 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 58/219 (26%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + ++VN L +N + + +G +D +TP ++ NP Sbjct: 95 TTWIVPDHPEHPIIVNTGEMRLYFFTDNFTKVITYPIGMGVLDFKTPTGVFKVTEKKTNP 154 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P+++ K + +++ Sbjct: 155 PWFVPKTLQAKY---------------GMSVMES-------------------------- 173 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 G N + K+ + +H T +P F R + GC R+ +I L + Sbjct: 174 GPDNPLGKYKLTLSWGD-YGIHGTSQP--FGVG-RLVSHGCTRMYPEHIEKLFPLV---K 226 Query: 361 PTWSRYHIEE-VVKTRKTTPVKLA------TEVPVHFVY 392 S +I E V+ + + L+ +P Y Sbjct: 227 VGTSVEYIYEPVMIGVRNGRIYLSVNQDFYHRLPDMLTY 265 >gi|282898177|ref|ZP_06306168.1| ErfK/YbiS/YcfS/YnhG [Raphidiopsis brookii D9] gi|281196708|gb|EFA71613.1| ErfK/YbiS/YcfS/YnhG [Raphidiopsis brookii D9] Length = 198 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 45/166 (27%), Gaps = 52/166 (31%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 E V+V++ + +V + VG+ +TP ++ +P W Sbjct: 65 PEAGNNQTDVVVDLSDRRVYVYLYDQVVASYPIAVGKKGWETPTGTFKVIHKEHHPIWKH 124 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + + G + Sbjct: 125 PITGKIFE-----------------------------------------------AGTDS 137 Query: 307 AMASTKIEFYS--RNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + I F+S +N H TP L + GC+R+RN Sbjct: 138 PLGDRWIGFWSDGKNEIGFHGTPNKDLIG---GAVSHGCLRMRNSD 180 >gi|52841825|ref|YP_095624.1| hypothetical protein lpg1595 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628936|gb|AAU27677.1| hypothetical protein lpg1595 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 244 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + V++N+ L + V + V +G+ +TP+ SRI NP W Sbjct: 93 NVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTV 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + PG N + Sbjct: 153 K------LQKAAESIGA-----------------------------PIPSEFPPGPHNPL 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H + ++GC+R+ +I L + TP Sbjct: 178 GQHVLRLGWP-AILIHGSNRVDGIGAK---VSAGCIRMLPEDIEHLYSLVSVGTP 228 >gi|332708202|ref|ZP_08428192.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332353028|gb|EGJ32578.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 435 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 16/212 (7%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNF--LARVDMGIDSDIPIISKE 73 IL + K + + + F DM S + I ++ Sbjct: 53 ALTILSTAANASAKVLQKGSRGSQVTSLQKELAAAGFYKGRITGNYDMLTQSYVAIFQQK 112 Query: 74 ------TIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP 126 +A + A Y+ G LP L G+ V L+++L G Sbjct: 113 KGLPIDGVAGPKTLAALYKT---AGTDIRLPTNTQLKRGSRGTVVSDLQKKLTTLGFF-- 167 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + ++ + ++AV FQ GL G+ +TL +N QL+ Sbjct: 168 NGPITGYYGRITQAAVIKFQQAKGLPVDGVAGPNTLFVINGGSIKNATQLRRGNRGTAVT 227 Query: 187 LEQKMGLRYVLVNIP--AASLEAVENGKVGLR 216 Q+ + N P E G V + Sbjct: 228 KLQQRMRELKVYNGPVTGFYGRLTEAGVVKFQ 259 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 16/148 (10%) Query: 29 KPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 + E + + + + F + ++ D +S+E A IA Sbjct: 292 TELRPGSNGESVTKLQNRLAQLGFYKGPVTGYYGKLTETAVKDY-QLSRELPAN---GIA 347 Query: 84 FYQDILSRGGWPELPI-----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + + + G + + PL G+ V L+ RLI G F Sbjct: 348 DSRTLSALRGNSGIAVAAAIITPLKRGSRGTRVNSLQNRLIYLGYYK--GLKDGVFGPAT 405 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 E+A+K +Q GL P+G+ D+ T ++ Sbjct: 406 EAALKRYQQDKGLFPNGIADARTFSSLA 433 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ SV +L+ RL G ++ + E+AVK +Q+ L +G+ DS T Sbjct: 294 LRPGSNGESVTKLQNRLAQLGFYK--GPVTGYYGKLTETAVKDYQLSRELPANGIADSRT 351 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 L A+ + + + K G R VN L Sbjct: 352 LSALRGNSGIAVA--------AAIITPLKRGSRGTRVNSLQNRLIY 389 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L GN +V +L++R+ + ++ + E+ V FQ GL +G+ D Sbjct: 214 ATQLRRGNRGTAVTKLQQRMRELKVY--NGPVTGFYGRLTEAGVVKFQRLRGLPVTGIAD 271 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMR 182 S TL + + + V +R Sbjct: 272 SRTLSDLAKNPNDKDNLTNVTELR 295 >gi|304316558|ref|YP_003851703.1| ErfK/YbiS/YcfS/YnhG family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778060|gb|ADL68619.1| ErfK/YbiS/YcfS/YnhG family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 386 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 57/219 (26%), Gaps = 81/219 (36%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNIP+ ++ V L + VG++ +P+ RI NP W+ P Sbjct: 32 VNIPSRTIYFVSQNISKL-YPIAVGKIVSTSPLGTYRIINKQINPTWISPW--------- 81 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 G+ V G N + I FYS Sbjct: 82 -------------------NGQVV-------------------PSGPNNPLGYRWIGFYS 103 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 H P +SGC+R+ + E+V Sbjct: 104 DYGI--HGNNMPSSIGT---LASSGCIRMYEA--------------DVEELYEMVNYGDI 144 Query: 378 TPVKLATEVPVHFVYISAWSPKD---SIIQF-RDDIYGL 412 V+ VY + ++ F D Y Sbjct: 145 ----------VNVVYQTMFTKTSPTGGKALFVYPDFYKK 173 >gi|227114591|ref|ZP_03828247.1| hypothetical protein PcarbP_16598 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 303 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R TP + + P W P + + Sbjct: 98 IVINVAEMRLYYYPKGSNTVEVLPIGIGQAGRDTPTNWVTSVKYKKEGPTWT-PTAATHR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 D P + G N M I Sbjct: 157 DYARRGESLPAFF----------------------------------PAGPENPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-----YHI 368 + H T F +R + GCVR+RN D+ +L ++ P +R I Sbjct: 183 YIGNLYAI--HGTNA--NFGIGLR-ISQGCVRLRN-DDI-KYLFENVPNGTRVQFINEPI 235 Query: 369 EEVVKTRKTTPVKLATEV 386 + ++ T +++ + Sbjct: 236 KVSLEPDGTHWIEVHEPL 253 >gi|228987342|ref|ZP_04147462.1| hypothetical protein bthur0001_40140 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157731|ref|ZP_04285806.1| hypothetical protein bcere0010_39120 [Bacillus cereus ATCC 4342] gi|228625688|gb|EEK82440.1| hypothetical protein bcere0010_39120 [Bacillus cereus ATCC 4342] gi|228772314|gb|EEM20760.1| hypothetical protein bthur0001_40140 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 186 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|218688603|ref|YP_002396815.1| hypothetical protein ECED1_0784 [Escherichia coli ED1a] gi|218426167|emb|CAR06989.1| conserved hypothetical protein [Escherichia coli ED1a] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|261820249|ref|YP_003258355.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] gi|261604262|gb|ACX86748.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] Length = 357 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TPI + + R P Sbjct: 91 LILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + G Sbjct: 151 WTPTAKMHAE-----------------------------------YAARGETLKAVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + H T F +R + GCVR+R D+ +L + P Sbjct: 176 PDNPMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KYLFNNVPVG 228 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R ++ V+ + V++ + Sbjct: 229 TRVQFINEPVKATVEPDGSRYVEVHNPL 256 >gi|34497388|ref|NP_901603.1| hypothetical protein CV_1933 [Chromobacterium violaceum ATCC 12472] gi|34103244|gb|AAQ59607.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 301 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 39/169 (23%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++++N+P A L ++GK+ V VG++ QTP I I P W +P+SI ++ Sbjct: 35 RHLVLNLPQARLFLYQDGKLARIFPVAVGKMLTQTPTGSFDITGIYRAPSWHVPKSIQEE 94 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + GKEV + R +++ Sbjct: 95 --------------------MRRSGKEVQTVVPPGPNNPLGPVFVRFG---ESSLGL--- 128 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 H T P +V F + GCVR+RN ++L + + Sbjct: 129 --------GFHGTNAP---GSVPGFRSHGCVRLRNDDALELARTVSRGD 166 >gi|322832676|ref|YP_004212703.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] gi|321167877|gb|ADW73576.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] Length = 340 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 49/179 (27%), Gaps = 44/179 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N L G + + +G + + TP+ + + R P W P + Sbjct: 131 PHEGIVINSAEMRLYYYPKGTNTVVVLPIGIGELGKDTPMNWVTTVQRKKAGPTWT-PTA 189 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 + ++ Y G N M Sbjct: 190 KMHEE----------YASRGEF------------------------LPAVFPAGPDNPMG 215 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + H T F +R + GCVR+R+ WL + P +R Sbjct: 216 LYALYVGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRDAD--IKWLFDNVPQGTRVQF 267 >gi|331700382|ref|YP_004336621.1| cell wall hydrolase/autolysin [Pseudonocardia dioxanivorans CB1190] gi|326955071|gb|AEA28768.1| cell wall hydrolase/autolysin [Pseudonocardia dioxanivorans CB1190] Length = 388 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGD-----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V +R L G P FD +VE AV+ FQ R GL G+ Sbjct: 4 LRRGDSGPAVAEIRGMLARYGLPAGQQAPPGGPAEQLFDEHVEQAVRAFQQRRGLITDGV 63 Query: 157 VDSSTLEAMN 166 V +T A+ Sbjct: 64 VGPATYRALR 73 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 22/96 (22%) Query: 83 AFYQDILSRGGWPELPIRPLHLGN-----------SSVSVQRLRERLIISGDLDPSKGLS 131 A Y+ + G W LG+ S V L+ERL+ G Sbjct: 67 ATYRALREAG-W--------KLGDRMLALLISAPMSGDDVVTLQERLLELGY--DVGRPG 115 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 FD E +K FQ +GL P G+ TL A+ Sbjct: 116 GVFDDQTERGLKGFQRDYGLVPDGVCGPQTLRALRQ 151 >gi|296103243|ref|YP_003613389.1| hypothetical protein ECL_02904 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057702|gb|ADF62440.1| hypothetical protein ECL_02904 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 328 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TP+ +++ R P W + + Sbjct: 123 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPLNWTTKVERKKAGPTWTPTAKMHAE 182 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + A G N M + Sbjct: 183 YIAA-----------------------------------GEPLPAVVPAGPDNPMGLYAL 207 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 208 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 255 >gi|324018500|gb|EGB87719.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 117-3] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|301051255|ref|ZP_07198083.1| ErfK/YbiS/YcfS/YnhG- like protein [Escherichia coli MS 185-1] gi|300297072|gb|EFJ53457.1| ErfK/YbiS/YcfS/YnhG- like protein [Escherichia coli MS 185-1] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|15800571|ref|NP_286583.1| hypothetical protein Z1041 [Escherichia coli O157:H7 EDL933] gi|15830150|ref|NP_308923.1| hypothetical protein ECs0896 [Escherichia coli O157:H7 str. Sakai] gi|16128787|ref|NP_415340.1| L,D-transpeptidase linking Lpp to murein [Escherichia coli str. K-12 substr. MG1655] gi|26246795|ref|NP_752835.1| hypothetical protein c0905 [Escherichia coli CFT073] gi|74311361|ref|YP_309780.1| hypothetical protein SSON_0798 [Shigella sonnei Ss046] gi|82543264|ref|YP_407211.1| hypothetical protein SBO_0709 [Shigella boydii Sb227] gi|82776103|ref|YP_402450.1| hypothetical protein SDY_0777 [Shigella dysenteriae Sd197] gi|89107670|ref|AP_001450.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|91209854|ref|YP_539840.1| hypothetical protein UTI89_C0823 [Escherichia coli UTI89] gi|110641023|ref|YP_668751.1| hypothetical protein ECP_0833 [Escherichia coli 536] gi|117622999|ref|YP_851912.1| hypothetical protein APECO1_1273 [Escherichia coli APEC O1] gi|157159386|ref|YP_001462014.1| hypothetical protein EcE24377A_0889 [Escherichia coli E24377A] gi|157160297|ref|YP_001457615.1| hypothetical protein EcHS_A0876 [Escherichia coli HS] gi|170020825|ref|YP_001725779.1| hypothetical protein EcolC_2824 [Escherichia coli ATCC 8739] gi|170080478|ref|YP_001729798.1| hypothetical protein ECDH10B_0888 [Escherichia coli str. K-12 substr. DH10B] gi|170683699|ref|YP_001742923.1| hypothetical protein EcSMS35_0843 [Escherichia coli SMS-3-5] gi|187733569|ref|YP_001880993.1| hypothetical protein SbBS512_E2529 [Shigella boydii CDC 3083-94] gi|188493106|ref|ZP_03000376.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|193064484|ref|ZP_03045565.1| YbiS protein [Escherichia coli E22] gi|195936860|ref|ZP_03082242.1| hypothetical protein EscherichcoliO157_10410 [Escherichia coli O157:H7 str. EC4024] gi|209918067|ref|YP_002292151.1| hypothetical protein ECSE_0876 [Escherichia coli SE11] gi|215485906|ref|YP_002328337.1| hypothetical protein E2348C_0771 [Escherichia coli O127:H6 str. E2348/69] gi|218553404|ref|YP_002386317.1| hypothetical protein ECIAI1_0856 [Escherichia coli IAI1] gi|218557724|ref|YP_002390637.1| hypothetical protein ECS88_0837 [Escherichia coli S88] gi|218694292|ref|YP_002401959.1| hypothetical protein EC55989_0862 [Escherichia coli 55989] gi|218699192|ref|YP_002406821.1| hypothetical protein ECIAI39_0796 [Escherichia coli IAI39] gi|218704237|ref|YP_002411756.1| hypothetical protein ECUMN_1003 [Escherichia coli UMN026] gi|227884216|ref|ZP_04002021.1| YbiS protein [Escherichia coli 83972] gi|237707219|ref|ZP_04537700.1| ybiS [Escherichia sp. 3_2_53FAA] gi|238900078|ref|YP_002925874.1| hypothetical protein BWG_0672 [Escherichia coli BW2952] gi|253774178|ref|YP_003037009.1| hypothetical protein ECBD_2804 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160896|ref|YP_003044004.1| hypothetical protein ECB_00786 [Escherichia coli B str. REL606] gi|254792015|ref|YP_003076852.1| hypothetical protein ECSP_0917 [Escherichia coli O157:H7 str. TW14359] gi|256021110|ref|ZP_05434975.1| hypothetical protein ShiD9_19479 [Shigella sp. D9] gi|256023585|ref|ZP_05437450.1| hypothetical protein E4_09438 [Escherichia sp. 4_1_40B] gi|260843061|ref|YP_003220839.1| hypothetical protein ECO103_0854 [Escherichia coli O103:H2 str. 12009] gi|260854110|ref|YP_003228001.1| hypothetical protein ECO26_0945 [Escherichia coli O26:H11 str. 11368] gi|261225467|ref|ZP_05939748.1| hypothetical protein EscherichiacoliO157_12828 [Escherichia coli O157:H7 str. FRIK2000] gi|261258564|ref|ZP_05951097.1| hypothetical protein EscherichiacoliO157EcO_22481 [Escherichia coli O157:H7 str. FRIK966] gi|291281816|ref|YP_003498634.1| hypothetical protein G2583_1047 [Escherichia coli O55:H7 str. CB9615] gi|293404118|ref|ZP_06648112.1| ybiS protein [Escherichia coli FVEC1412] gi|293409195|ref|ZP_06652771.1| hypothetical protein ECEG_00125 [Escherichia coli B354] gi|293414096|ref|ZP_06656745.1| hypothetical protein ECDG_00647 [Escherichia coli B185] gi|293433117|ref|ZP_06661545.1| ybiS protein [Escherichia coli B088] gi|298379900|ref|ZP_06989505.1| ybiS protein [Escherichia coli FVEC1302] gi|300816467|ref|ZP_07096689.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 107-1] gi|300824280|ref|ZP_07104397.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 119-7] gi|300895727|ref|ZP_07114321.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 198-1] gi|300907149|ref|ZP_07124814.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 84-1] gi|300920072|ref|ZP_07136529.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 115-1] gi|300922844|ref|ZP_07138930.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 182-1] gi|300929376|ref|ZP_07144847.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 187-1] gi|300947095|ref|ZP_07161313.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 116-1] gi|300957020|ref|ZP_07169268.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 175-1] gi|300991887|ref|ZP_07179712.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 200-1] gi|300993382|ref|ZP_07180364.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 45-1] gi|301020680|ref|ZP_07184751.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 69-1] gi|301026990|ref|ZP_07190378.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 196-1] gi|301303577|ref|ZP_07209699.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 124-1] gi|301328013|ref|ZP_07221176.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 78-1] gi|301646252|ref|ZP_07246146.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 146-1] gi|306812778|ref|ZP_07446971.1| hypothetical protein ECNC101_12717 [Escherichia coli NC101] gi|307137444|ref|ZP_07496800.1| hypothetical protein EcolH7_04844 [Escherichia coli H736] gi|307313771|ref|ZP_07593388.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|309786514|ref|ZP_07681137.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|309798049|ref|ZP_07692425.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 145-7] gi|312969157|ref|ZP_07783364.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|312970896|ref|ZP_07785075.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|331641336|ref|ZP_08342471.1| putative periplasmic protein [Escherichia coli H736] gi|331646039|ref|ZP_08347142.1| putative periplasmic protein [Escherichia coli M605] gi|331651829|ref|ZP_08352848.1| putative periplasmic protein [Escherichia coli M718] gi|331656841|ref|ZP_08357803.1| putative periplasmic protein [Escherichia coli TA206] gi|331662177|ref|ZP_08363100.1| putative periplasmic protein [Escherichia coli TA143] gi|331667189|ref|ZP_08368054.1| putative periplasmic protein [Escherichia coli TA271] gi|331676558|ref|ZP_08377254.1| putative periplasmic protein [Escherichia coli H591] gi|331682326|ref|ZP_08382945.1| putative periplasmic protein [Escherichia coli H299] gi|332282334|ref|ZP_08394747.1| ybiS [Shigella sp. D9] gi|77416786|sp|P0AAY0|YBIS_ECO57 RecName: Full=Probable L,D-transpeptidase YbiS; Flags: Precursor gi|77416787|sp|P0AAX9|YBIS_ECOL6 RecName: Full=Probable L,D-transpeptidase YbiS; Flags: Precursor gi|77416788|sp|P0AAX8|YBIS_ECOLI RecName: Full=Probable L,D-transpeptidase YbiS; Flags: Precursor gi|12513818|gb|AAG55191.1|AE005262_11 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|26107194|gb|AAN79378.1|AE016757_282 Protein ybiS precursor [Escherichia coli CFT073] gi|1787040|gb|AAC73906.1| L,D-transpeptidase linking Lpp to murein [Escherichia coli str. K-12 substr. MG1655] gi|4062386|dbj|BAA35500.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|13360355|dbj|BAB34319.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|73854838|gb|AAZ87545.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81240251|gb|ABB60961.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81244675|gb|ABB65383.1| conserved hypothetical protein [Shigella boydii Sb227] gi|91071428|gb|ABE06309.1| protein YbiS precursor [Escherichia coli UTI89] gi|110342615|gb|ABG68852.1| putative periplasmic protein [Escherichia coli 536] gi|115512123|gb|ABJ00198.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|157065977|gb|ABV05232.1| YbiS protein [Escherichia coli HS] gi|157081416|gb|ABV21124.1| YbiS protein [Escherichia coli E24377A] gi|169755753|gb|ACA78452.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|169888313|gb|ACB02020.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|170521417|gb|ACB19595.1| YbiS protein [Escherichia coli SMS-3-5] gi|187430561|gb|ACD09835.1| YbiS protein [Shigella boydii CDC 3083-94] gi|188488305|gb|EDU63408.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|192928946|gb|EDV82559.1| YbiS protein [Escherichia coli E22] gi|209775718|gb|ACI86171.1| hypothetical protein ECs0896 [Escherichia coli] gi|209775720|gb|ACI86172.1| hypothetical protein ECs0896 [Escherichia coli] gi|209775722|gb|ACI86173.1| hypothetical protein ECs0896 [Escherichia coli] gi|209775724|gb|ACI86174.1| hypothetical protein ECs0896 [Escherichia coli] gi|209775726|gb|ACI86175.1| hypothetical protein ECs0896 [Escherichia coli] gi|209911326|dbj|BAG76400.1| conserved hypothetical protein [Escherichia coli SE11] gi|215263978|emb|CAS08319.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|218351024|emb|CAU96728.1| conserved hypothetical protein [Escherichia coli 55989] gi|218360172|emb|CAQ97721.1| conserved hypothetical protein [Escherichia coli IAI1] gi|218364493|emb|CAR02175.1| conserved hypothetical protein [Escherichia coli S88] gi|218369178|emb|CAR16933.1| conserved hypothetical protein [Escherichia coli IAI39] gi|218431334|emb|CAR12212.1| conserved hypothetical protein [Escherichia coli UMN026] gi|226898429|gb|EEH84688.1| ybiS [Escherichia sp. 3_2_53FAA] gi|227838968|gb|EEJ49434.1| YbiS protein [Escherichia coli 83972] gi|238860289|gb|ACR62287.1| conserved protein [Escherichia coli BW2952] gi|242376611|emb|CAQ31320.1| L,D-transpeptidase YbiS [Escherichia coli BL21(DE3)] gi|253325222|gb|ACT29824.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972797|gb|ACT38468.1| hypothetical protein ECB_00786 [Escherichia coli B str. REL606] gi|253977017|gb|ACT42687.1| hypothetical protein ECD_00786 [Escherichia coli BL21(DE3)] gi|254591415|gb|ACT70776.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|257752759|dbj|BAI24261.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257758208|dbj|BAI29705.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|260450034|gb|ACX40456.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|281177954|dbj|BAI54284.1| conserved hypothetical protein [Escherichia coli SE15] gi|284920670|emb|CBG33733.1| putative exported protein [Escherichia coli 042] gi|290761689|gb|ADD55650.1| hypothetical protein G2583_1047 [Escherichia coli O55:H7 str. CB9615] gi|291323936|gb|EFE63358.1| ybiS protein [Escherichia coli B088] gi|291428704|gb|EFF01729.1| ybiS protein [Escherichia coli FVEC1412] gi|291434154|gb|EFF07127.1| hypothetical protein ECDG_00647 [Escherichia coli B185] gi|291469663|gb|EFF12147.1| hypothetical protein ECEG_00125 [Escherichia coli B354] gi|294490216|gb|ADE88972.1| YbiS protein [Escherichia coli IHE3034] gi|298279598|gb|EFI21106.1| ybiS protein [Escherichia coli FVEC1302] gi|299879483|gb|EFI87694.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 196-1] gi|300305497|gb|EFJ60017.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 200-1] gi|300316213|gb|EFJ65997.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 175-1] gi|300360339|gb|EFJ76209.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 198-1] gi|300398555|gb|EFJ82093.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 69-1] gi|300401116|gb|EFJ84654.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 84-1] gi|300406598|gb|EFJ90136.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 45-1] gi|300412891|gb|EFJ96201.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 115-1] gi|300420876|gb|EFK04187.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 182-1] gi|300453271|gb|EFK16891.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 116-1] gi|300462667|gb|EFK26160.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 187-1] gi|300523254|gb|EFK44323.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 119-7] gi|300531157|gb|EFK52219.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 107-1] gi|300841076|gb|EFK68836.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 124-1] gi|300845505|gb|EFK73265.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 78-1] gi|301075523|gb|EFK90329.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 146-1] gi|305853541|gb|EFM53980.1| hypothetical protein ECNC101_12717 [Escherichia coli NC101] gi|306906411|gb|EFN36925.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|307552663|gb|ADN45438.1| putative periplasmic protein [Escherichia coli ABU 83972] gi|307627771|gb|ADN72075.1| hypothetical protein UM146_13550 [Escherichia coli UM146] gi|308118379|gb|EFO55641.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 145-7] gi|308925577|gb|EFP71061.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|309701097|emb|CBJ00395.1| putative exported protein [Escherichia coli ETEC H10407] gi|310336657|gb|EFQ01824.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|312286559|gb|EFR14472.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|312945338|gb|ADR26165.1| hypothetical protein NRG857_03675 [Escherichia coli O83:H1 str. NRG 857C] gi|315060055|gb|ADT74382.1| L,D-transpeptidase linking LPP to murein [Escherichia coli W] gi|315135469|dbj|BAJ42628.1| hypothetical protein ECDH1ME8569_0772 [Escherichia coli DH1] gi|315257808|gb|EFU37776.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 85-1] gi|315287261|gb|EFU46673.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 110-3] gi|315292555|gb|EFU51907.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 153-1] gi|315299355|gb|EFU58607.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 16-3] gi|315619823|gb|EFV00342.1| conserved hypothetical protein [Escherichia coli 3431] gi|320637682|gb|EFX07474.1| L,D-transpeptidase [Escherichia coli O157:H7 str. G5101] gi|320642807|gb|EFX12008.1| L,D-transpeptidase [Escherichia coli O157:H- str. 493-89] gi|320648264|gb|EFX16919.1| L,D-transpeptidase [Escherichia coli O157:H- str. H 2687] gi|320654101|gb|EFX22169.1| L,D-transpeptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659724|gb|EFX27280.1| L,D-transpeptidase [Escherichia coli O55:H7 str. USDA 5905] gi|320664195|gb|EFX31346.1| L,D-transpeptidase [Escherichia coli O157:H7 str. LSU-61] gi|323155813|gb|EFZ41982.1| hypothetical protein ECEPECA14_2372 [Escherichia coli EPECa14] gi|323159638|gb|EFZ45617.1| hypothetical protein ECE128010_4056 [Escherichia coli E128010] gi|323165741|gb|EFZ51527.1| hypothetical protein SS53G_3947 [Shigella sonnei 53G] gi|323185025|gb|EFZ70391.1| hypothetical protein ECOK1357_1481 [Escherichia coli 1357] gi|323190989|gb|EFZ76256.1| hypothetical protein ECRN5871_0837 [Escherichia coli RN587/1] gi|323379386|gb|ADX51654.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] gi|323938173|gb|EGB34433.1| ykud domain-containing protein [Escherichia coli E1520] gi|323942691|gb|EGB38856.1| ykud domain-containing protein [Escherichia coli E482] gi|323947096|gb|EGB43108.1| ykud domain-containing protein [Escherichia coli H120] gi|323953519|gb|EGB49385.1| ykud domain-containing protein [Escherichia coli H252] gi|323958108|gb|EGB53817.1| ykud domain-containing protein [Escherichia coli H263] gi|323963065|gb|EGB58636.1| ykud domain-containing protein [Escherichia coli H489] gi|323969542|gb|EGB64831.1| ykud domain-containing protein [Escherichia coli TA007] gi|324009747|gb|EGB78966.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 57-2] gi|324013042|gb|EGB82261.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 60-1] gi|324116242|gb|EGC10164.1| ykud domain-containing protein [Escherichia coli E1167] gi|331038134|gb|EGI10354.1| putative periplasmic protein [Escherichia coli H736] gi|331044791|gb|EGI16918.1| putative periplasmic protein [Escherichia coli M605] gi|331050107|gb|EGI22165.1| putative periplasmic protein [Escherichia coli M718] gi|331055089|gb|EGI27098.1| putative periplasmic protein [Escherichia coli TA206] gi|331060599|gb|EGI32563.1| putative periplasmic protein [Escherichia coli TA143] gi|331065545|gb|EGI37438.1| putative periplasmic protein [Escherichia coli TA271] gi|331075247|gb|EGI46545.1| putative periplasmic protein [Escherichia coli H591] gi|331079957|gb|EGI51136.1| putative periplasmic protein [Escherichia coli H299] gi|332104686|gb|EGJ08032.1| ybiS [Shigella sp. D9] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|222032549|emb|CAP75288.1| Uncharacterized protein ybiS [Escherichia coli LF82] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|39995294|ref|NP_951245.1| putative lipoprotein [Geobacter sulfurreducens PCA] gi|39982056|gb|AAR33518.1| lipoprotein, putative [Geobacter sulfurreducens PCA] gi|298504297|gb|ADI83020.1| peptidoglycan L,D-transpeptidase lipoprotein, YkuD family, SPOR domain-containing [Geobacter sulfurreducens KN400] Length = 435 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 66/218 (30%), Gaps = 44/218 (20%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL- 215 V + + A N VD+ + + + + + +++N+ L + L Sbjct: 83 VGINAISAANPGVDVWLPKAGQRITLPLNFILPDAPRKGIVINLATMRLFQFKENGGALA 142 Query: 216 --RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V +G +R TP +R+ R P W +P SI + Sbjct: 143 VSTYPVGIGTKERPTPQGPTRVARKASRPTWYVPASIAED-------------------- 182 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + R PG N + + +H T +P Sbjct: 183 ---------------HRKKGDILPARVPPGPENPLGDYALYLSRS-GYLIHGTNKPASIG 226 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 ++GC+R+ + L +DT + I Sbjct: 227 ---LKASNGCMRLY-PEHI-EVLFRDTAVNTPVLIVNQ 259 >gi|85059020|ref|YP_454722.1| hypothetical protein SG1042 [Sodalis glossinidius str. 'morsitans'] gi|84779540|dbj|BAE74317.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 375 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 60/210 (28%), Gaps = 49/210 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TP + + R P Sbjct: 91 LILPDTPHEGIVINSAEMRLYYYPKGTKTVIVLPIGIGELGKDTPSNWVTSVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W ++I + + G Sbjct: 151 WTPTKAIHAE-----------------------------------YAERGETLPEVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ +L P Sbjct: 176 PDNPMGLYALYVGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KYLFDHVPVG 228 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEVPV 388 +R ++ ++ + +++ + V Sbjct: 229 TRVQFINEPVKATIEPDGSRYLEVHNPLSV 258 >gi|300939857|ref|ZP_07154493.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 21-1] gi|300455291|gb|EFK18784.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 21-1] gi|323967420|gb|EGB62841.1| ykud domain-containing protein [Escherichia coli M863] gi|323976796|gb|EGB71884.1| ykud domain-containing protein [Escherichia coli TW10509] gi|327253606|gb|EGE65235.1| hypothetical protein ECSTEC7V_1030 [Escherichia coli STEC_7v] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGSNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|160935923|ref|ZP_02083297.1| hypothetical protein CLOBOL_00816 [Clostridium bolteae ATCC BAA-613] gi|158441165|gb|EDP18882.1| hypothetical protein CLOBOL_00816 [Clostridium bolteae ATCC BAA-613] Length = 533 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G ++RL++RL+ G +D + F + AVK FQ ++ L G+V + T Sbjct: 81 LRIGVRHEIIKRLQQRLMDLGFMDNDEPTD-YFGEMTQQAVKHFQRQNELPTDGIVGNVT 139 Query: 162 LEAMNVPVDL 171 +A+ P Sbjct: 140 WDAIMSPDAK 149 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 9/143 (6%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + + V EII +++ F D D + + + Sbjct: 76 PAPEYLRIGVRHEIIKRLQQRLMDLGF----MDNDEPTDYFGEMTQQAVKHFQRQNELPT 131 Query: 86 QDILSRGGWPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 I+ W + + G ++R+++RL G L + ++ F E+ Sbjct: 132 DGIVGNVTWDAIMSPDAKYYAVSKGTQGDDIERIQQRLYELGYLATADLVTGNFGDSTEA 191 Query: 141 AVKLFQMRHGLDPSGMVDSSTLE 163 AV Q +GL+ G V T+ Sbjct: 192 AVLKLQEVNGLEQDGKVGQRTIN 214 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 43/121 (35%), Gaps = 8/121 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V +ERL G L + A+ AVK FQ R+ G + ST Sbjct: 226 LSYGEKSDVVLACQERLKELGYL--TTTPDGAYGEDTVVAVKQFQARNDQVVDGYLGPST 283 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLE----QKMGLRYVLVNIPAASLEAVENGKVGLRS 217 A+N D R L + R + + V N+ EA EN +S Sbjct: 284 RIALN-SPDARANGLMLG-ERGDAVTKVQQLLNKHGYLVSGNVTGYYGEATENAVRNFQS 341 Query: 218 T 218 Sbjct: 342 R 342 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 11/160 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGIDSDIPIISKET 74 L + + +++ + + D + + + Sbjct: 215 LLYSDEIKPNFLSYGEKSDVVLACQERLKELGYLTTTPDGAYGEDTVVAVKQFQARNDQV 274 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + I P+ L LG +V ++++ L G L S ++ + Sbjct: 275 VDG---YLGPSTRIALNS--PDARANGLMLGERGDAVTKVQQLLNKHGYL-VSGNVTGYY 328 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 E+AV+ FQ R+GL G+V T+ + R Sbjct: 329 GEATENAVRNFQSRNGLTSDGLVGVQTMAKLTGDNVRRPA 368 >gi|260866985|ref|YP_003233387.1| hypothetical protein ECO111_0879 [Escherichia coli O111:H- str. 11128] gi|257763341|dbj|BAI34836.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|323175561|gb|EFZ61156.1| hypothetical protein ECOK1180_5846 [Escherichia coli 1180] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|187776237|ref|ZP_02801365.2| YbiS protein [Escherichia coli O157:H7 str. EC4196] gi|188024951|ref|ZP_02775023.2| YbiS protein [Escherichia coli O157:H7 str. EC4113] gi|189010026|ref|ZP_02804376.2| YbiS protein [Escherichia coli O157:H7 str. EC4076] gi|189402321|ref|ZP_02781618.2| YbiS protein [Escherichia coli O157:H7 str. EC4401] gi|189402920|ref|ZP_02792334.2| YbiS protein [Escherichia coli O157:H7 str. EC4486] gi|189404285|ref|ZP_02788340.2| YbiS protein [Escherichia coli O157:H7 str. EC4501] gi|189404905|ref|ZP_02812045.2| YbiS protein [Escherichia coli O157:H7 str. EC869] gi|189405886|ref|ZP_02824908.2| YbiS protein [Escherichia coli O157:H7 str. EC508] gi|191166143|ref|ZP_03027977.1| YbiS protein [Escherichia coli B7A] gi|191173759|ref|ZP_03035282.1| YbiS protein [Escherichia coli F11] gi|193069322|ref|ZP_03050277.1| YbiS protein [Escherichia coli E110019] gi|194428213|ref|ZP_03060756.1| YbiS protein [Escherichia coli B171] gi|194433126|ref|ZP_03065408.1| YbiS protein [Shigella dysenteriae 1012] gi|208808882|ref|ZP_03251219.1| YbiS protein [Escherichia coli O157:H7 str. EC4206] gi|208816380|ref|ZP_03257559.1| YbiS protein [Escherichia coli O157:H7 str. EC4045] gi|208822794|ref|ZP_03263113.1| YbiS protein [Escherichia coli O157:H7 str. EC4042] gi|209397897|ref|YP_002269488.1| YbiS protein [Escherichia coli O157:H7 str. EC4115] gi|217325389|ref|ZP_03441473.1| YbiS protein [Escherichia coli O157:H7 str. TW14588] gi|187768201|gb|EDU32045.1| YbiS protein [Escherichia coli O157:H7 str. EC4196] gi|188015726|gb|EDU53848.1| YbiS protein [Escherichia coli O157:H7 str. EC4113] gi|189002893|gb|EDU71879.1| YbiS protein [Escherichia coli O157:H7 str. EC4076] gi|189356224|gb|EDU74643.1| YbiS protein [Escherichia coli O157:H7 str. EC4401] gi|189363361|gb|EDU81780.1| YbiS protein [Escherichia coli O157:H7 str. EC4486] gi|189366517|gb|EDU84933.1| YbiS protein [Escherichia coli O157:H7 str. EC4501] gi|189373062|gb|EDU91478.1| YbiS protein [Escherichia coli O157:H7 str. EC869] gi|189377791|gb|EDU96207.1| YbiS protein [Escherichia coli O157:H7 str. EC508] gi|190903752|gb|EDV63467.1| YbiS protein [Escherichia coli B7A] gi|190906009|gb|EDV65625.1| YbiS protein [Escherichia coli F11] gi|192957275|gb|EDV87723.1| YbiS protein [Escherichia coli E110019] gi|194413773|gb|EDX30052.1| YbiS protein [Escherichia coli B171] gi|194418623|gb|EDX34710.1| YbiS protein [Shigella dysenteriae 1012] gi|208728683|gb|EDZ78284.1| YbiS protein [Escherichia coli O157:H7 str. EC4206] gi|208733028|gb|EDZ81716.1| YbiS protein [Escherichia coli O157:H7 str. EC4045] gi|208738279|gb|EDZ85962.1| YbiS protein [Escherichia coli O157:H7 str. EC4042] gi|209159297|gb|ACI36730.1| YbiS protein [Escherichia coli O157:H7 str. EC4115] gi|217321610|gb|EEC30034.1| YbiS protein [Escherichia coli O157:H7 str. TW14588] gi|320177309|gb|EFW52313.1| L,D-transpeptidase YbiS [Shigella dysenteriae CDC 74-1112] gi|320183313|gb|EFW58168.1| L,D-transpeptidase YbiS [Shigella flexneri CDC 796-83] gi|320192704|gb|EFW67345.1| L,D-transpeptidase YbiS [Escherichia coli O157:H7 str. EC1212] gi|320196685|gb|EFW71308.1| L,D-transpeptidase YbiS [Escherichia coli WV_060327] gi|320199008|gb|EFW73605.1| L,D-transpeptidase YbiS [Escherichia coli EC4100B] gi|326338293|gb|EGD62122.1| L,D-transpeptidase YbiS [Escherichia coli O157:H7 str. 1125] gi|326346271|gb|EGD70009.1| L,D-transpeptidase YbiS [Escherichia coli O157:H7 str. 1044] gi|330910564|gb|EGH39074.1| l,D-transpeptidase YbiS [Escherichia coli AA86] gi|332088926|gb|EGI94038.1| hypothetical protein SB521682_2510 [Shigella boydii 5216-82] gi|332091082|gb|EGI96172.1| hypothetical protein SD15574_2484 [Shigella dysenteriae 155-74] gi|332097449|gb|EGJ02429.1| hypothetical protein SB359474_0835 [Shigella boydii 3594-74] gi|332342151|gb|AEE55485.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 304 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 99 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 159 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 231 >gi|148359132|ref|YP_001250339.1| hypothetical protein LPC_1022 [Legionella pneumophila str. Corby] gi|296107181|ref|YP_003618881.1| hypothetical protein lpa_02313 [Legionella pneumophila 2300/99 Alcoy] gi|148280905|gb|ABQ54993.1| hypothetical protein LPC_1022 [Legionella pneumophila str. Corby] gi|295649082|gb|ADG24929.1| Hypothetical protein lpa_02313 [Legionella pneumophila 2300/99 Alcoy] Length = 244 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 48/175 (27%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + +++N+ L + V + V +G+ +TP+ SRI NP W Sbjct: 93 NVPRKGIVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRITSKEINPTWRPTV 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + PG N + Sbjct: 153 K------LQKAAESIGA-----------------------------PIPSEFPPGPYNPL 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H + ++GC+R+ +I L + TP Sbjct: 178 GQHVLRLGWP-AILIHGSNRVDGIGAK---VSAGCIRMLPEDIEHLYSLVSVGTP 228 >gi|206976246|ref|ZP_03237154.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217961641|ref|YP_002340211.1| hypothetical protein BCAH187_A4281 [Bacillus cereus AH187] gi|222097598|ref|YP_002531655.1| protein erfk/srfk precursor [Bacillus cereus Q1] gi|229140884|ref|ZP_04269429.1| hypothetical protein bcere0013_39780 [Bacillus cereus BDRD-ST26] gi|229198279|ref|ZP_04324986.1| hypothetical protein bcere0001_38090 [Bacillus cereus m1293] gi|206745442|gb|EDZ56841.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217067758|gb|ACJ82008.1| conserved hypothetical protein [Bacillus cereus AH187] gi|221241656|gb|ACM14366.1| Protein erfK/srfK precursor [Bacillus cereus Q1] gi|228585158|gb|EEK43269.1| hypothetical protein bcere0001_38090 [Bacillus cereus m1293] gi|228642674|gb|EEK98960.1| hypothetical protein bcere0013_39780 [Bacillus cereus BDRD-ST26] Length = 186 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|307610295|emb|CBW99859.1| hypothetical protein LPW_16201 [Legionella pneumophila 130b] Length = 241 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + V++N+ L + V + V +G+ +TP+ SRI NP W Sbjct: 93 NVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTV 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + PG N + Sbjct: 153 K------LQKAAESIGA-----------------------------PIPSEFPPGPHNPL 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H + ++GC+R+ +I L + TP Sbjct: 178 GQHVLRLGWP-AILIHGSNRVDGIGAK---VSAGCIRMLPEDIEHLYSLVSVGTP 228 >gi|53802376|ref|YP_112943.1| LysM domain-containing protein [Methylococcus capsulatus str. Bath] gi|53756137|gb|AAU90428.1| LysM domain protein [Methylococcus capsulatus str. Bath] Length = 434 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 48/180 (26%), Gaps = 43/180 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK---VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +++N+ L V V +G+ R TP + + R P Sbjct: 97 FTLPDAPRKGMVINLATMRLYHFPAKAAEGVISTYPVGIGKEGRSTPTGYMTVVRKTEFP 156 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +I + ++ + P Sbjct: 157 TWYPTENIRRD-----------------------------------HALKGDPLPPAVSP 181 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N + + +H T +P R ++GC+R+ D+ + P Sbjct: 182 GPDNPLGDYAMYLSRPQ-YLIHGTNKPYSIG--FRA-SNGCIRLY-PEDIAAVFPEVKPG 236 >gi|323172264|gb|EFZ57902.1| hypothetical protein ECLT68_3301 [Escherichia coli LT-68] Length = 302 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 97 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 157 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 181 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 182 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 229 >gi|146310968|ref|YP_001176042.1| hypothetical protein Ent638_1310 [Enterobacter sp. 638] gi|145317844|gb|ABP59991.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 58/238 (24%) Query: 135 DAYVESAVKLFQM--RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 D +E +Q+ + L+ + VD +A V +N+ + L + Sbjct: 50 DQPLEYFAAEYQLGLSNMLEANPGVDPYLPKAGTV----------LNIPQQLILPDTVHE 99 Query: 193 LRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSI 250 +++N L G + + +G++ + TP+ +++ R P W + Sbjct: 100 G--IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPMNWTTKVERKKAGPTWTPTAKM 157 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + A G N M Sbjct: 158 HAEYIAA-----------------------------------GEPLPAVVPAGPDNPMGL 182 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + H T F +R + GCVR+RN +L ++ P +R Sbjct: 183 YALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFENVPVGTRVQF 233 >gi|170768987|ref|ZP_02903440.1| YbiS protein [Escherichia albertii TW07627] gi|170122059|gb|EDS90990.1| YbiS protein [Escherichia albertii TW07627] Length = 306 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TP+ +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPVNWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 233 >gi|259909024|ref|YP_002649380.1| hypothetical protein YbiS [Erwinia pyrifoliae Ep1/96] gi|224964646|emb|CAX56160.1| conserved uncharacterized protein YbiS [Erwinia pyrifoliae Ep1/96] gi|283479040|emb|CAY74956.1| Protein erfK/srfK precursor [Erwinia pyrifoliae DSM 12163] Length = 362 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 LL +++N L G K + + +G + + TPI + + R P Sbjct: 91 LLLPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTTVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + ++ + + G Sbjct: 151 WT-PTKKMHEE----------------------------------YAARGESLPEVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL + P Sbjct: 176 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-AEDI-KWLFSNVPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|170731554|ref|YP_001763501.1| peptidoglycan binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169814796|gb|ACA89379.1| Peptidoglycan-binding domain 1 protein [Burkholderia cenocepacia MC0-3] Length = 266 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 3/114 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V L+ +L+ +G + + SAV FQ HGL G+ Sbjct: 3 KTLRLGDRGADVSYLQRQLVAAG---ARLDTDAIYGSATRSAVMAFQASHGLVADGIAGP 59 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 T ++ +L R L+ + + + + + +G+ Sbjct: 60 KTWSTLSAGRRDPRHLTDADLQRAADRLQVDLAAVRAVNEVESRGAGFLPDGRP 113 >gi|310767078|gb|ADP12028.1| conserved uncharacterized protein YbiS [Erwinia sp. Ejp617] Length = 362 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 LL +++N L G K + + +G + + TPI + + R P Sbjct: 91 LLLPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTTVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + ++ + + G Sbjct: 151 WT-PTKKMHEE----------------------------------YAARGESLPEVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL + P Sbjct: 176 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-AEDI-KWLFSNVPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|292487711|ref|YP_003530584.1| protein ErfK/srfK [Erwinia amylovora CFBP1430] gi|292898946|ref|YP_003538315.1| exported protein [Erwinia amylovora ATCC 49946] gi|291198794|emb|CBJ45903.1| putative exported protein [Erwinia amylovora ATCC 49946] gi|291553131|emb|CBA20176.1| Protein erfK/srfK precursor [Erwinia amylovora CFBP1430] gi|312171824|emb|CBX80081.1| Protein erfK/srfK precursor [Erwinia amylovora ATCC BAA-2158] Length = 366 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 LL +++N L G K + V +G + + TPI + + R P Sbjct: 91 LLLPDAPREGIVINSAEMRLYYYPKGSKTVVVLPVGIGELGKDTPINWTTTVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + ++ + + G Sbjct: 151 WT-PTKKMHEE----------------------------------YAARGESLPEVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL + P Sbjct: 176 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-AEDI-KWLFSNVPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|196038830|ref|ZP_03106138.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196030553|gb|EDX69152.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] Length = 186 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|160880026|ref|YP_001558994.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428692|gb|ABX42255.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 635 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 80/256 (31%), Gaps = 21/256 (8%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 K V + E +++ F D I ++ ++ Sbjct: 170 PAPKFYDIGVRHSTVMEIQQRLMDLGF----MEDAEPTDYYGSITAEAVKMFQRQSDLKQ 225 Query: 86 QDILSRGGWPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 IL + L LG ++R+++RL G L + ++ F ES Sbjct: 226 DGILGPDTFEMLLSDNAKHYAAKLGMDGADIKRIQQRLYEMGYLATADMVTGHFGDVTES 285 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK Q +GL G V T++ + + + + L QK Sbjct: 286 AVKKMQENNGLGVDGKVGKMTVD-LLYSEEAKPNLIAYGEQSDIVLAAQKR-------LK 337 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI----NRIMFNPYWVIPRSIIQKDMM 256 L +GK G ++V V + + ++ R + +P ++ D Sbjct: 338 ELGYLTTTPDGKYGNDTSVAVKQFQSRNDLVVDGFLGPSTREVLKSSSAVPNGVMLGDSG 397 Query: 257 ALLRQDPQYLKDNNIH 272 +++ + L Sbjct: 398 DAVKRIQELLNKYGYL 413 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P + LG+S +V+R++E L G L S ++ F E AVK FQ +GL G Sbjct: 386 AVPNGVM-LGDSGDAVKRIQELLNKYGYLS-SANMTGYFGEVTEDAVKSFQKNNGLSADG 443 Query: 156 MVDSSTLEAMNVP 168 V T+ + Sbjct: 444 NVGVMTMTKLTSS 456 >gi|266620407|ref|ZP_06113342.1| endopeptidase, cell wall lytic activity [Clostridium hathewayi DSM 13479] gi|288867984|gb|EFD00283.1| endopeptidase, cell wall lytic activity [Clostridium hathewayi DSM 13479] Length = 513 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V L++RL+ G +D + F ESAVK FQ ++ L G+V T Sbjct: 87 LRNGVEHPIVASLQQRLMDLGFMDNDEPT-QYFGTMTESAVKTFQRQNHLAQDGIVGPET 145 Query: 162 LEAMNVPVDL 171 L A+ P Sbjct: 146 LNAIMTPSAK 155 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 9/133 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V + RL G L + A+ +AVK FQ R+ L G + ST Sbjct: 232 LSYGEKSDVVLACQTRLKELGYL--TTTPDGAYGDDTAAAVKQFQARNDLVVDGYLGPST 289 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY---VLVNIPAASLEAVENGKVGLRST 218 A+N + + L + Q++ +Y N+ E E +S+ Sbjct: 290 RVALN-SAEAQANGLMLGEQGETVTRIQQLLNKYGYLSSANVTGYYGEVTEKAVKSFQSS 348 Query: 219 VIV---GRVDRQT 228 + G V RQT Sbjct: 349 NGLTADGSVGRQT 361 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 48/164 (29%), Gaps = 21/164 (12%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGIDSDIPIISKET 74 L + + +++ + + D + Sbjct: 221 LLYSDEIKPNFLSYGEKSDVVLACQTRLKELGYLTTTPDGAYGDDTAAAVKQFQARNDLV 280 Query: 75 IA-----QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 + T A+ + + G L LG +V R+++ L G L S Sbjct: 281 VDGYLGPSTRVALNSAEA-QANG---------LMLGEQGETVTRIQQLLNKYGYLS-SAN 329 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 ++ + E AVK FQ +GL G V T+ + + Sbjct: 330 VTGYYGEVTEKAVKSFQSSNGLTADGSVGRQTMNKLTGSNVKKA 373 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 29/154 (18%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRF------DNFLARVDMGIDSDIP---------I 69 + V + + V I+ +++ F + + I Sbjct: 81 NPVPEYLRNGVEHPIVASLQQRLMDLGFMDNDEPTQYFGTMTESAVKTFQRQNHLAQDGI 140 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 + ET+ A Y + ++R++ RL G L Sbjct: 141 VGPETLNAIMTPSAKYYAVSKD--------------VDGDDIKRIQNRLYELGYLATGDL 186 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 ++ F E+AV Q +GL+ G V T+ Sbjct: 187 VTGHFGDDTEAAVIKLQEVNGLNVDGKVGRQTIN 220 >gi|308535396|ref|YP_002140776.2| peptidoglycan L,D-transpeptidase lipoprotein [Geobacter bemidjiensis Bem] gi|308052741|gb|ACH40980.2| peptidoglycan L,D-transpeptidase lipoprotein, YkuD family, SPOR domain-containing protein [Geobacter bemidjiensis Bem] Length = 440 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 44/210 (20%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL-EAVENGK--V 213 + + + A N VD+ + + ++ + + +++N+ L E+GK V Sbjct: 87 LGINAISAANPGVDVWVPEPGKEVILPLSFILPDAPRKGIVINLATMRLFRFKEDGKAQV 146 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V VG +R TP RI R P W +P SI + Sbjct: 147 VSTYPVGVGTAERPTPTGKMRIERKTALPTWHVPASIAED-------------------- 186 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + + PG N + + + +H T +P Sbjct: 187 ---------------HRKKGDLLPAKVPPGPENPLGERALYLS-KAGYLIHGTNKPASIG 230 Query: 334 NVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 T+GC+R+ N+ L +TP Sbjct: 231 ---LKATNGCLRLYPENVTTLYEETPVNTP 257 >gi|71282503|ref|YP_270846.1| LysM domain-containing protein [Colwellia psychrerythraea 34H] gi|71148243|gb|AAZ28716.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Colwellia psychrerythraea 34H] Length = 303 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 41/182 (22%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + + +++N+P L + + V +GR TP+ + I +P W P Sbjct: 96 ISRKGIVINLPELRLYYYSPEENKVHVFPVGIGRQGLSTPLTSTVIGEKRKDPDWR-PTK 154 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 +QK + +YL G N Sbjct: 155 EMQKR---HFAEHGEYL------------------------------PDVVPAGPNNPFG 181 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + +H + + F +R +SGC+R+ + D+ WL + P ++ + Sbjct: 182 KYALRLGTSE-YLIHGSNKR--FGIGMRA-SSGCIRMYD-DDI-KWLFDNVPVNTKVRVV 235 Query: 370 EV 371 Sbjct: 236 NQ 237 >gi|300715947|ref|YP_003740750.1| conserved uncharacterized protein YbiS [Erwinia billingiae Eb661] gi|299061783|emb|CAX58899.1| Putative conserved uncharacterized protein YbiS [Erwinia billingiae Eb661] Length = 433 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 62/226 (27%), Gaps = 62/226 (27%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + V VG + + TPI + + R P Sbjct: 91 LILPDAPREGIVINSAEMRLYYYPKGTKTVVVLPVGVGELGKDTPINWTTTVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + +D + G Sbjct: 151 WT-PTKKMHEDSV----------------------------------AAGSPLPTIFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL + P Sbjct: 176 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KWLFDNVPVG 228 Query: 364 SR-YHIEEVVK-----------------TRKTTPVKLATEVPVHFV 391 +R I++ +K ++ VP+ Sbjct: 229 TRVQFIDQPIKATVEPDGSRLVEVHNPLSQTEEQFNSREPVPLSIT 274 >gi|282860963|ref|ZP_06270029.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] gi|282564699|gb|EFB70235.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] Length = 311 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 4/139 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+SS V+ L+ RL G D S + E++V+ FQ + GL +G D+ T Sbjct: 106 MKTGDSSDRVRELQARLRQIGHFDRSPT--GYYGTTTEASVRSFQGKRGLPRTGRTDTVT 163 Query: 162 LEA-MNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + +++ + +L+ R + + M R + ++ + +L + +GKV V Sbjct: 164 WQRLLDMTREPTADELRPPTERAVAKPDPRCMTGRVLCISKNSRTLAWMIDGKVVSSMDV 223 Query: 220 IVGRVDRQTPILHSRINRI 238 G T + Sbjct: 224 RFGSEYTPTREGVFEVYWK 242 >gi|288942661|ref|YP_003444901.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] gi|288898033|gb|ADC63869.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] Length = 321 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 43/159 (27%), Gaps = 41/159 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVG--LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + ++VN L + VG+ TP+ + + +P W Sbjct: 102 NVPHQGIVVNRAEKRLYYYPPNSPNEVRIYAITVGKDAMATPLGNFDVIEKRKDPTWTP- 160 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 +R + ++ + PG N Sbjct: 161 --------GPQVRAN--------------------------HAAKGHILPPTVPPGPDNP 186 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + + + +H T +P + GC+R+ Sbjct: 187 LGRFAMRLSNPD-YLIHGTNQPWGMGLE---VSGGCIRM 221 >gi|228909986|ref|ZP_04073806.1| hypothetical protein bthur0013_41350 [Bacillus thuringiensis IBL 200] gi|228849503|gb|EEM94337.1| hypothetical protein bthur0013_41350 [Bacillus thuringiensis IBL 200] Length = 186 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|254507501|ref|ZP_05119635.1| general secretion pathway protein A [Vibrio parahaemolyticus 16] gi|219549571|gb|EED26562.1| general secretion pathway protein A [Vibrio parahaemolyticus 16] Length = 490 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 7/97 (7%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y+ I W + L G V L L + L + S +D+ ++ VKL Sbjct: 399 YRQI-----WRKYWGGSLKPGMQGEPVALLDRHLSML--LGKPRTGSDRYDSALQEKVKL 451 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 FQ GL G+ +TL+ + V + L N Sbjct: 452 FQRWQGLSVDGIAGKNTLQRLEEMVREGVPSLTDNEE 488 >gi|323227282|gb|EGA11450.1| hypothetical protein SEEM0055_00971 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 245 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 40 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 99 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 100 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 124 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 125 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 172 >gi|125974461|ref|YP_001038371.1| peptidoglycan binding domain-containing protein [Clostridium thermocellum ATCC 27405] gi|256005183|ref|ZP_05430151.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum DSM 2360] gi|281418988|ref|ZP_06250006.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum JW20] gi|125714686|gb|ABN53178.1| Peptidoglycan-binding domain 1 [Clostridium thermocellum ATCC 27405] gi|255990837|gb|EEU00951.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum DSM 2360] gi|281407445|gb|EFB37705.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum JW20] gi|316941598|gb|ADU75632.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum DSM 1313] Length = 360 Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 44/153 (28%), Gaps = 18/153 (11%) Query: 27 VEKPIHASVLDEIINESYH-----SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 + + + ++ + + + + E Sbjct: 30 SSGILKEGMSGSQVTSLQRDLNTLGYLDVTPTGYYGSLTTAAVKKL----QRNYGLKEDG 85 Query: 82 IAF-------YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 IA + I R L G S SV L++ L G L + Sbjct: 86 IAGPDTLSLIKRLINERTASRSSGGTTLKEGMSGSSVTALQKDLKALGYLSVDPT--GYY 143 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + AVK Q +HGL+ G+ TL ++ Sbjct: 144 GSLTKEAVKKLQAKHGLEQDGIAGPKTLALIDR 176 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 2/78 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G S V L+ L G LD + + + +AVK Q +GL G+ Sbjct: 30 SSGILKEGMSGSQVTSLQRDLNTLGYLDVTPT--GYYGSLTTAAVKKLQRNYGLKEDGIA 87 Query: 158 DSSTLEAMNVPVDLRIRQ 175 TL + ++ R Sbjct: 88 GPDTLSLIKRLINERTAS 105 >gi|320177848|gb|EFW52834.1| L,D-transpeptidase YbiS [Shigella boydii ATCC 9905] Length = 304 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 99 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 159 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 231 >gi|300813344|ref|ZP_07093695.1| excinuclease ABC, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512487|gb|EFK39636.1| excinuclease ABC, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1208 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 61/231 (26%), Gaps = 65/231 (28%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL--RYVLVN 199 +K FQ + SG +D+ T EA+ N + ++ VN Sbjct: 985 IKKFQATMNIPISGTLDNKTKEAL------------YNKDYKVWDMVTNPPSKGYWIAVN 1032 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L K + V +G QTP +I + NP W Sbjct: 1033 KSRRILTMYMGDKSLGKYPVTLGTSATQTPSGRGKIGNMHKNPAW--------------- 1077 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR- 318 + + N + + + Sbjct: 1078 ---------GGM---------------------NGKYKPVAADDPKNPLGERWMGLSLKG 1107 Query: 319 -NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + +H +P + ++GC+R+ N D++ + + I Sbjct: 1108 FSGYGIHGNIKPHQIG---GYYSNGCIRMFN-YDIEEAVFPQMKIGNPVWI 1154 >gi|213581084|ref|ZP_03362910.1| hypothetical protein SentesTyph_07706 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 210 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 5 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 64 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 65 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 89 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 90 YIGRLYAI--HGTNA--NFGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 137 >gi|238061899|ref|ZP_04606608.1| cell wall hydrolase/autolysin [Micromonospora sp. ATCC 39149] gi|237883710|gb|EEP72538.1| cell wall hydrolase/autolysin [Micromonospora sp. ATCC 39149] Length = 388 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 12/206 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G+ +V +R L L P + FD E AV+ FQ GL G V + Sbjct: 2 RPIRTGDRGPAVSEIRAVLTGLDLLTPGSSAADEFDTETERAVRAFQQSRGLSVDGRVGA 61 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T A++ R R L + E G + +E G R+ Sbjct: 62 ETWRALD---AARWRLGARTL--YHAVPEPLTGEDVRSLQE-----RLLEMGYDVGRADA 111 Query: 220 IVG-RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + G R R + ++++ ++ PQ+L++++ + Sbjct: 112 VYGVRTSRAVAQFQREMGLKPDGSCGPHTMRVLRRLGRKVVGGRPQWLRESD-AIRQAGP 170 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGK 304 V V + G Sbjct: 171 TLVGRTVVIDPGHGGTDPGVVVPDGP 196 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 18/104 (17%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGD 123 +A + + G W L LG V+ L+ERL+ G Sbjct: 45 RAFQQSRGLSVDGRVGAETWRALDAARWRLGARTLYHAVPEPLTGEDVRSLQERLLEMGY 104 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + AV FQ GL P G T+ + Sbjct: 105 DVGRA--DAVYGVRTSRAVAQFQREMGLKPDGSCGPHTMRVLRR 146 >gi|229174826|ref|ZP_04302346.1| hypothetical protein bcere0006_39100 [Bacillus cereus MM3] gi|228608494|gb|EEK65796.1| hypothetical protein bcere0006_39100 [Bacillus cereus MM3] Length = 186 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|223986583|ref|ZP_03636578.1| hypothetical protein HOLDEFILI_03900 [Holdemania filiformis DSM 12042] gi|223961442|gb|EEF65959.1| hypothetical protein HOLDEFILI_03900 [Holdemania filiformis DSM 12042] Length = 159 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 32/166 (19%) Query: 20 LPMGLSLVEKPIHASV----LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + L L I +++I+ + + + D + + + + Sbjct: 1 MAYTLQLGSNGIDVKKMQYYINQILAAPNLTPMEE--DGIYGQKTEFAVAVF-----QYV 53 Query: 76 AQTEKAIAFYQDILSRGGWPEL----------------PIRPLHLGNSSVSVQRLRERLI 119 I+ + W ++ R L +GN + VQ+ ++ L Sbjct: 54 YHL-----NVDGIIGQATWDKIIQEFKNLPSPAMERNKSTRTLRVGNIGLGVQKFQQYLN 108 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +P + F + AV+ FQ +GL+ G++ ++T + + Sbjct: 109 ELIAPNPRLVVDGNFGQNTKRAVETFQALNGLNVDGVIGNNTWDRI 154 >gi|198243048|ref|YP_002214802.1| hypothetical protein SeD_A0935 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937564|gb|ACH74897.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 306 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 101 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 161 -----------------------------------YRAVGEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 233 >gi|326622555|gb|EGE28900.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 304 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 99 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 159 -----------------------------------YRAVGEPLPAVVPAGPDNPMGLYAL 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 231 >gi|295096482|emb|CBK85572.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 306 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TP+ +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPLNWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + A G N M + Sbjct: 161 YIAA-----------------------------------GEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFDNVPVGTRVQF 233 >gi|288550103|ref|ZP_05969281.2| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cancerogenus ATCC 35316] gi|288316740|gb|EFC55678.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cancerogenus ATCC 35316] Length = 306 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TP+ +++ R P W + + Sbjct: 101 IVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPLNWTTKVERKKAGPTWTPTAKMHAE 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + A G N M + Sbjct: 161 YIAA-----------------------------------GEPLPAVVPAGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L + P +R Sbjct: 186 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFDNVPVGTRVQF 233 >gi|213419377|ref|ZP_03352443.1| hypothetical protein Salmonentericaenterica_16811 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 233 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 28 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 87 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 88 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 112 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D +L ++ P +R Sbjct: 113 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVPVGTRVQF 160 >gi|218899313|ref|YP_002447724.1| hypothetical protein BCG9842_B0975 [Bacillus cereus G9842] gi|218544812|gb|ACK97206.1| conserved hypothetical protein [Bacillus cereus G9842] Length = 186 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|16331313|ref|NP_442041.1| hypothetical protein slr0769 [Synechocystis sp. PCC 6803] gi|1001486|dbj|BAA10111.1| slr0769 [Synechocystis sp. PCC 6803] Length = 204 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 52/172 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++++ + + A +N KV V VG+ +TP + ++ +++ NP W P Sbjct: 74 THIVLVLGERKVYAYQNDKVLASYPVAVGKKGWETPQGNFQVIQMVENPVWENPW----- 128 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 GK+V + I Sbjct: 129 -----------------------NGKKVAASL-------------------DGPIGIRWI 146 Query: 314 EFYS--RNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 F+S +N H TP+ + GCVR+RN ++ L + TP Sbjct: 147 GFWSDGKNTIGFHGTPKKHEHFLGT-AASHGCVRMRNQDVVALFNMVQNGTP 197 >gi|189490384|ref|YP_001956952.1| virion structural protein [Pseudomonas phage 201phi2-1] gi|164609449|gb|ABY63058.1| virion structural protein [Pseudomonas phage 201phi2-1] Length = 262 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 21/202 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V RL+ +LI G S F E AVK Q+R L G+V ++T Sbjct: 3 LKNGSKGDDVIRLQRKLIGLGY---SVKDDGVFGDNTEKAVKAVQLRFNLKDDGIVGNNT 59 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ P R + + Y+ V++PA V+ K Sbjct: 60 WAVLDTPTTTRP---ALTDKDYQW------AADYLQVDLPA-----VKAVKEVEAPAGGF 105 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN----NIHMIDEK 277 R T + + + P + + + YL + + ++ Sbjct: 106 LPDGRVTILYERHVMFKRLRVNGINPEPFAAANPSIVNKSTGGYLGKSAEYTRLEQAEKI 165 Query: 278 GKEVFVEEVDWNSPEPPNFIFR 299 + +E W + + + ++ Sbjct: 166 DEVSALESCSWGAYQIMGYHWK 187 >gi|257057905|ref|YP_003135737.1| N-acetylmuramoyl-L-alanine amidase [Saccharomonospora viridis DSM 43017] gi|256587777|gb|ACU98910.1| N-acetylmuramoyl-L-alanine amidase [Saccharomonospora viridis DSM 43017] Length = 382 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV---AFDAYVESAVKLFQMRHGLDPSGM 156 R L G++ V +R L L PS+ + FD VE AV+ FQ + GL G+ Sbjct: 2 RVLRRGDTGPEVAEIRSMLSALDLLPPSEEANGHAAFFDQQVEHAVRAFQQQRGLITDGV 61 Query: 157 VDSSTLEAMNVP 168 V +T A+ Sbjct: 62 VGPATYRALRGS 73 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%) Query: 69 IISKETIAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQ 112 + + +A + +++ G + L HLG+ V Sbjct: 37 AFFDQQVEHAVRAFQQQRGLITDGVVGPATYRALRGSTYHLGSRPLAYSVSSPVHGDDVF 96 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-PVDL 171 L+ERL G + F E A+K FQ +GL G+ +T+ A+ Sbjct: 97 ALQERLTELGY--DAGRPDGGFGPQTERALKNFQRDYGLVVDGICGPATVRALRQLSPRA 154 Query: 172 R 172 R Sbjct: 155 R 155 >gi|188534376|ref|YP_001908173.1| Conserved hypothetical protein YbiS [Erwinia tasmaniensis Et1/99] gi|188029418|emb|CAO97295.1| Conserved hypothetical protein YbiS [Erwinia tasmaniensis Et1/99] Length = 361 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 LL +++N L G + + +G + + TPI + + R P Sbjct: 91 LLLPDAPREGIVINSAEMRLYYYPKGTNTVVVLPIGIGELGKDTPIDWTTTVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + Q+ + + G Sbjct: 151 WTPTKKMHQE-----------------------------------YAARGESLPEVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL + P Sbjct: 176 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-AEDI-QWLFSNVPVG 228 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R + V+ + V++ + Sbjct: 229 TRVQFIDQPVKAAVEPDGSRYVEVHNPL 256 >gi|89897696|ref|YP_521183.1| hypothetical protein DSY4950 [Desulfitobacterium hafniense Y51] gi|89337144|dbj|BAE86739.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 231 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 IL+ G + L R L G+ V L+++L G + + + + ++AV FQ Sbjct: 22 ILASGAYGALGDRALSQGSRGSEVTELQKKLASLGYVV--GKVDGVYGSKTKAAVTRFQK 79 Query: 148 RHGLDPSGMVDSSTLEAMN 166 GL G+ + T++ + Sbjct: 80 ERGLKVDGIAGAQTIKELK 98 >gi|219670845|ref|YP_002461280.1| spore cortex-lytic enzyme [Desulfitobacterium hafniense DCB-2] gi|219541105|gb|ACL22844.1| spore cortex-lytic enzyme [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 IL+ G + L R L G+ V L+++L G + + + + ++AV FQ Sbjct: 19 ILASGAYGALGDRALSQGSRGSEVTELQKKLASLGYVV--GKVDGVYGSKTKAAVTRFQK 76 Query: 148 RHGLDPSGMVDSSTLEAMN 166 GL G+ + T++ + Sbjct: 77 ERGLKVDGIAGAQTIKELK 95 >gi|317047415|ref|YP_004115063.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] gi|316949032|gb|ADU68507.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] Length = 354 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 49/230 (21%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVG 222 N VD+ + + NL+ ++L+ +++N L G K + + +G Sbjct: 69 EANPGVDVYLPKAGTNLVIPQQLILPDAPREGIVINSAEMRLYYYPKGTKTVVVLPIGIG 128 Query: 223 RVDRQTPI-LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 + + TPI + + R P W +++ + Sbjct: 129 ELGKDTPINWTTSVQRKKAGPTWTPTKAMHAE---------------------------- 160 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + G N M + H T F +R + Sbjct: 161 -------YAARGESIPEVFPAGPDNPMGLYALYIGRLYAV--HGTNA--NFGIGLR-VSH 208 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHI-----EEVVKTRKTTPVKLATEV 386 GCVR+R D+ WL + P +R + V+ + V++ + Sbjct: 209 GCVRLR-ADDI-KWLFDNVPVGTRVQFIDQPVKATVEPDGSRYVEVHNPL 256 >gi|23013110|ref|ZP_00053052.1| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 84 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L +L P W E + R T + L V+ +Y +AW+ + I+ FRDDIY Sbjct: 2 ELGELMLG--PRWQGKLAENIAANRSTRTLMLERTTQVYMMYWTAWTDEAGILHFRDDIY 59 Query: 411 GLDNVHVGII---PLPEDHP 427 G D + + P P Sbjct: 60 GHDRRLMTAMERSRSPAPRP 79 >gi|228935470|ref|ZP_04098288.1| hypothetical protein bthur0009_39170 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824222|gb|EEM70036.1| hypothetical protein bthur0009_39170 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 186 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 ++P Y+ N Sbjct: 73 -----------------AKNPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|134103806|ref|YP_001109467.1| N-acetylmuramoyl-L-alanine amidase [Saccharopolyspora erythraea NRRL 2338] gi|291005736|ref|ZP_06563709.1| N-acetylmuramoyl-L-alanine amidase [Saccharopolyspora erythraea NRRL 2338] gi|133916429|emb|CAM06542.1| N-acetylmuramoyl-L-alanine amidase [Saccharopolyspora erythraea NRRL 2338] Length = 383 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 LH G+ +V +R L G L +DA VE AV++FQ + GL G+V Sbjct: 4 LHRGDVGPAVAEIRNTLAALGLLPAPNGRPDPATYDAAVEHAVRVFQQQRGLITDGVVGP 63 Query: 160 STLEAMN 166 +T A+ Sbjct: 64 ATYRALT 70 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 14/148 (9%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 +H + + E +++ D + + Q ++ + ++ Sbjct: 4 LHRGDVGPAVAEIRNTLAALGLLPAPNGRPDPATYDAAVEHAVRVFQQQRGLIT-DGVVG 62 Query: 91 RGGWPELPIRPLHLGN-----------SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + L LG+ S V L+ERL+ G + F E Sbjct: 63 PATYRALTDARWRLGDRSLAFLVSKPVSGDDVFALQERLLELGY--DAGRPDGIFGHETE 120 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 A++ FQ +GL+P G+ TL A+ Sbjct: 121 QALRSFQRDYGLNPDGICGPGTLRALRQ 148 >gi|108805098|ref|YP_645035.1| cell wall hydrolase/autolysin [Rubrobacter xylanophilus DSM 9941] gi|108766341|gb|ABG05223.1| cell wall hydrolase/autolysin [Rubrobacter xylanophilus DSM 9941] Length = 358 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V L+ RL G ++G+ F E AV+ FQ R G+ G+V Sbjct: 2 RTLRRGDRGREVVDLQTRLQALGYDLGNRGIDGVFREETELAVRAFQQRVGILADGLVGP 61 Query: 160 STLEAM 165 T + Sbjct: 62 VTWREL 67 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 12/91 (13%) Query: 93 GWPELPIRPLHLG----------NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 W EL G V ++ L G ++ FD AV Sbjct: 63 TWRELVEAGYRPGGRLLYLRQPPFRGADVMEMQRMLNDLGF--DPGAVNGLFDGRTARAV 120 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 + FQ GL P G+VD + + +++ + Sbjct: 121 RDFQKNAGLQPDGVVDGAVFKTLSIYAAQTL 151 >gi|229019363|ref|ZP_04176187.1| hypothetical protein bcere0030_38690 [Bacillus cereus AH1273] gi|229025609|ref|ZP_04182016.1| hypothetical protein bcere0029_39050 [Bacillus cereus AH1272] gi|228735703|gb|EEL86291.1| hypothetical protein bcere0029_39050 [Bacillus cereus AH1272] gi|228741931|gb|EEL92107.1| hypothetical protein bcere0030_38690 [Bacillus cereus AH1273] Length = 186 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 61/194 (31%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + G +++VN L +++GK+ V G+ + TP I Sbjct: 22 NPRTGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK--------- 72 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KIN 306 +DP Y+ + G N Sbjct: 73 ------------AKDPYYIAKD------------------------------IPGGSPKN 90 Query: 307 AMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 + S I F + +H T +P + + GC+R++ +L P Sbjct: 91 PLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLFDRIPI 145 Query: 363 WSRYHIEEVVKTRK 376 ++ I + K+ + Sbjct: 146 GTKVWIVKSKKSFQ 159 >gi|256752566|ref|ZP_05493421.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748563|gb|EEU61612.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] Length = 327 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ V L+ RL G + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDKGPFVVNLQARLKSLGF--DPGPIDGIFGRKTEEAVKAYQQSRGLPVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|167036871|ref|YP_001664449.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039577|ref|YP_001662562.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter sp. X514] gi|300915173|ref|ZP_07132488.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307725097|ref|YP_003904848.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|320115293|ref|YP_004185452.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853817|gb|ABY92226.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X514] gi|166855705|gb|ABY94113.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300888897|gb|EFK84044.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307582158|gb|ADN55557.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|319928384|gb|ADV79069.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 327 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ V L+ RL G + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDKGPFVVNLQARLKSLGF--DPGPIDGIFGRKTEEAVKAYQQSRGLPVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|242240654|ref|YP_002988835.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] gi|242132711|gb|ACS87013.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] Length = 366 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 83/280 (29%), Gaps = 67/280 (23%) Query: 124 LDPSKGLSVAFDAYVE--------SAVKLF--QMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 S ++ +A++ F Q + GL L N +D+ + Sbjct: 35 YPLPAPNSRLVGENIQVTIPTDSTAALEHFAAQYQMGLSN--------LLEANPGIDVYL 86 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-L 231 + + ++L+ +++N L G K + + +G++ + TPI Sbjct: 87 PKPGSTMTVPQQLILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGQLGKDTPINW 146 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 + + R P W ++ + Y Sbjct: 147 VTSVQRKKERPTWTPTAAMHAE-----------YAARGEF-------------------- 175 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 G N M + + H T F +R + GCVR+R+ Sbjct: 176 ----LPKIYPAGPDNPMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLRDKD- 225 Query: 352 LDVWLLKDTPTWSR-----YHIEEVVKTRKTTPVKLATEV 386 +L + P +R ++ V+ + V++ + Sbjct: 226 -IKFLFSNVPVGTRVQFINEPVKATVEPDGSRYVEVHNPL 264 >gi|228967193|ref|ZP_04128229.1| hypothetical protein bthur0004_39970 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792562|gb|EEM40128.1| hypothetical protein bthur0004_39970 [Bacillus thuringiensis serovar sotto str. T04001] Length = 173 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L + G +++VN L +++GK+ S V G+ + TP + Sbjct: 4 WPLGENPRAGDPFIIVNKATNKLAYIDDGKIQKVSPVATGKTNELTPEGTFDVVMK---- 59 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 60 -----------------AKDPYYIAKD------------------------------IPG 72 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 73 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 127 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 128 DRIPIGTKVWIVKSKKSFQ 146 >gi|227326330|ref|ZP_03830354.1| hypothetical protein PcarcW_03064 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 355 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TPI + + R P Sbjct: 89 LILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPT 148 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + G Sbjct: 149 WTPTAKMHAE-----------------------------------YAARGETLQKVFPAG 173 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + H T F +R + GCVR+R D+ +L + P Sbjct: 174 PDNPMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KYLFNNVPVG 226 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R ++ V+ + V++ + Sbjct: 227 TRVQFINEPVKATVEPDGSRYVEVHNPL 254 >gi|254818669|ref|ZP_05223670.1| putative N-acetylmuramoyl-L-alanine amidase [Mycobacterium intracellulare ATCC 13950] Length = 407 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 9/77 (11%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS---------VAFDAYVESAVKLFQMRH 149 L G+ S +V +R L G LD S FDA ++ AV+ FQ Sbjct: 9 GDALRCGDRSAAVTEIRATLASLGMLDGSDDEDLTTGRHVALELFDAELDQAVRAFQQHR 68 Query: 150 GLDPSGMVDSSTLEAMN 166 GL G+V +T A+ Sbjct: 69 GLLVDGIVGEATYRALK 85 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 19/156 (12%) Query: 27 VEKPIHASVLDEIINESYHSIVN-DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + + E ++ + D + + Q +A + Sbjct: 8 YGDALRCGDRSAAVTEIRATLASLGMLDGSDDEDLTTGRHVALELFDAELDQAVRAFQQH 67 Query: 86 QDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKG 129 + +L G + L LG V L+ RL G + Sbjct: 68 RGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLFGDDVATLQARLQDLGFY--TGL 125 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F +A+ +Q +GL G+ TL ++ Sbjct: 126 VDGYFGLQTHNALMSYQREYGLSADGICGPETLRSL 161 >gi|115380132|ref|ZP_01467166.1| hypothetical protein STIAU_0960 [Stigmatella aurantiaca DW4/3-1] gi|310822017|ref|YP_003954375.1| hypothetical protein STAUR_4769 [Stigmatella aurantiaca DW4/3-1] gi|115362855|gb|EAU62056.1| hypothetical protein STIAU_0960 [Stigmatella aurantiaca DW4/3-1] gi|309395089|gb|ADO72548.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 529 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V+ L+ RL G F E+AVK FQ +H L+ G+V Sbjct: 234 VLKEGSKGTEVKTLQGRLEKLGF--ELGQQDGVFGPKTEAAVKRFQSKHNLEADGIVGPK 291 Query: 161 TLEAMNVPVDLRIRQ 175 T +A+ + R Q Sbjct: 292 THQAIEKALSARTEQ 306 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 34/106 (32%), Gaps = 19/106 (17%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI--------RPLHLGNSSVSVQRLRERLIISGDLDPS 127 A+TE+A S W + P L G SV+ L++ L + Sbjct: 302 ARTEQAKRQSDAFESGSKWKDAPALADVKSGKEHLQQGMEGGSVKHLQKLLGVE------ 355 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPS---GMVDSSTLEAMNVPVD 170 F AV FQ H LD G V TL AM Sbjct: 356 --TDGKFGPNTRKAVAEFQREHRLDVGDAAGSVGPKTLAAMEKAAR 399 >gi|117929357|ref|YP_873908.1| cell wall hydrolase/autolysin [Acidothermus cellulolyticus 11B] gi|117649820|gb|ABK53922.1| cell wall hydrolase/autolysin [Acidothermus cellulolyticus 11B] Length = 378 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSV-------AFDAYVESAVKLFQMRHGLDPS 154 + LG+ S +V +R RL G L + G FD V+ A++ FQ + GL Sbjct: 7 MRLGDRSFAVAEIRHRLAHLGLLSRTNGDHDCVRAACDVFDETVDHAIRAFQQQRGLRTD 66 Query: 155 GMVDSSTLEAMN 166 G+VD+ T A++ Sbjct: 67 GVVDAETFRALD 78 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 19/150 (12%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG- 92 + E H + + + + + + ET+ +A + + + G Sbjct: 10 GDRSFAVAEIRHRLAHLGLLSRTNGDHDCVRAACDVF-DETVDHAIRAFQQQRGLRTDGV 68 Query: 93 ----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + L LG+ V L+ RL G F Sbjct: 69 VDAETFRALDEAKWRLGDRVLSYVPGHPLVGDDVAALQRRLCDMGF--DCGRCDGIFGPL 126 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 E+A++ FQ GL G + TL A+ Sbjct: 127 TEAALREFQRNVGLPADGTCGADTLRALQR 156 >gi|323499427|ref|ZP_08104399.1| general secretion pathway protein A [Vibrio sinaloensis DSM 21326] gi|323315483|gb|EGA68522.1| general secretion pathway protein A [Vibrio sinaloensis DSM 21326] Length = 536 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y+ I W + L G +V +L L + L S +D+ +E VKL Sbjct: 445 YRHI-----WRQYWSTALKPGMQGEAVLQLEHHLSVL--LGQPSLNSNVYDSALEEKVKL 497 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 FQ GL G+ TLE + + + QL + Sbjct: 498 FQRWQGLAVDGIAGKRTLERLESLIRENVPQLNQSKE 534 >gi|229104755|ref|ZP_04235416.1| hypothetical protein bcere0019_38970 [Bacillus cereus Rock3-28] gi|228678628|gb|EEL32844.1| hypothetical protein bcere0019_38970 [Bacillus cereus Rock3-28] Length = 186 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 63/200 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKIFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRKT 377 P ++ I + KT + Sbjct: 141 DRIPIGTKVWIVKSKKTFQR 160 >gi|317494173|ref|ZP_07952589.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917946|gb|EFV39289.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 306 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 58/220 (26%), Gaps = 62/220 (28%) Query: 192 GLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRS 249 +++N L G K + + +G + R TP+ + + R P W P Sbjct: 97 PREGIIINSAEMRLYYYPKGSKTVVVLPIGIGELGRDTPMNWVTSVQRKKAGPTWT-PTK 155 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 + ++ + G N M Sbjct: 156 KMHEE----------------------------------YAANGEILPQVFPAGPDNPMG 181 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-YHI 368 + H T F +R + GCVR+R+ D +L + P +R I Sbjct: 182 LYALYIGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRD--DDIKYLFDNVPVGTRLQFI 234 Query: 369 EEVVK-----------------TRKTTPVKLATEVPVHFV 391 E VK + VPV Sbjct: 235 NEPVKATVEPDGSRYIEVHNPLSTTEQQFNSDAPVPVVLT 274 >gi|50119764|ref|YP_048931.1| hypothetical protein ECA0821 [Pectobacterium atrosepticum SCRI1043] gi|49610290|emb|CAG73734.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 365 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TPI + + R P Sbjct: 91 LILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + G Sbjct: 151 WTPTAKMHAE-----------------------------------YAARGETLQKVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + H T F +R + GCVR+R D+ +L P Sbjct: 176 PDNPMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KYLFNSVPVG 228 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R ++ V+ + V++ + Sbjct: 229 TRVQFINEPVKATVEPDGSRYVEVHNPL 256 >gi|209525841|ref|ZP_03274377.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209493814|gb|EDZ94133.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 472 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V +++ RL G L + F ++AV FQ + L G+V + Sbjct: 53 VLAIGDFGPEVTQIQNRLRALGYLSANAT--GYFGEETQNAVIRFQRDNRLVQDGIVGPN 110 Query: 161 TLEAMNVP----VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 T+ A+ + + + V+ ++ L G + +L N Sbjct: 111 TVVALIATNQNAISRPLNTIPVSDRQLIGLGLGDSGPGVTSLQNRLRNLGFFNNNST 167 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L LG+ V L++RL G + + F AV FQ + + +G V Sbjct: 300 PSSILLLGSRGADVIALQQRLQQLGYY--TGMIDGVFGESTRVAVLRFQRDNAITQTGQV 357 Query: 158 DSST 161 +T Sbjct: 358 GPTT 361 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 GN+ +V+R++ RL G + ++ FD ++AV FQ + + +G+V +T Sbjct: 400 GNAGENVRRIQRRLRELGFY--NGPINGFFDGQTQNAVIQFQQAYNITTTGIVGPTT 454 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 91 RGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G L L G+ V ++ L G ++ +D AV+ FQM + Sbjct: 202 NRGTGSLAGNVSLGPGSFGPIVGLVQRELQRLGFFP--GQITNFYDEVTFQAVRNFQMVN 259 Query: 150 GLDPSGMVDSST 161 GL P+G + +T Sbjct: 260 GLTPTGFIGPTT 271 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+S V L+ RL G + + F AV FQ + + +G+V T Sbjct: 140 LGLGDSGPGVTSLQNRLRNLGFFNNNST--GYFGPITRDAVIRFQQANLIAATGLVTEDT 197 Query: 162 LE 163 L Sbjct: 198 LA 199 >gi|284053689|ref|ZP_06383899.1| Peptidoglycan-binding domain 1 protein [Arthrospira platensis str. Paraca] Length = 130 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 T+A E I++R + P P L G+ V L+ RL G + + Sbjct: 16 TVASAESLTNRETQIVARATPTQNPTSPVLRRGSRGQDVAELQIRLRELGYFNNPNLGN- 74 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F + AV+ FQ GL P G+V T +A+ Sbjct: 75 -FGPITQQAVRQFQSDRGLRPDGIVGQETRQALA 107 >gi|227113507|ref|ZP_03827163.1| hypothetical protein PcarbP_11112 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 357 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TPI + + R P Sbjct: 89 LILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPT 148 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + G Sbjct: 149 WTPTAKMHAE-----------------------------------YAARGETLQKVFPAG 173 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + H T F +R + GCVR+R+ D +L + P Sbjct: 174 PDNPMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLRD--DDIKYLFNNVPVG 226 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R ++ V+ + V++ + Sbjct: 227 TRVQFINEPVKATVEPDGSRYVEVHNPL 254 >gi|118620070|ref|YP_908402.1| hydrolase [Mycobacterium ulcerans Agy99] gi|118572180|gb|ABL06931.1| hydrolase [Mycobacterium ulcerans Agy99] Length = 406 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHG 150 L G+ S +V +R L G LD FD ++ AV+ FQ G Sbjct: 9 GDTLRCGDRSAAVAEIRAALAALGMLDNPDEDLSTGRHIALELFDPELDHAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALR 84 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 13/90 (14%) Query: 87 DILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFD 135 I+ + L LG V L+ RL G + + F Sbjct: 73 GIVGEATYRALREASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFY--TGLVDGYFG 130 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ +Q +G+ G+ TL ++ Sbjct: 131 LQTHNALMSYQREYGMSADGICGPETLRSL 160 >gi|318041244|ref|ZP_07973200.1| hypothetical protein SCB01_06021 [Synechococcus sp. CB0101] Length = 192 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 71/180 (39%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L +++G++ R VG +TP ++ ++ P W P Sbjct: 58 RQLMVLKDGRLLRRYPAAVGTEGWETPAGRHQVLEMVPYPIWEHP--------------- 102 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY------ 316 GK+V PG N + S I FY Sbjct: 103 -------------SNGKQV-------------------GPGPNNPLGSRWIGFYRDCTPR 130 Query: 317 -SRNNT------------YMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + H TP R + GCVR+ N+ ++ + TP Sbjct: 131 QNAWDGERYLSVDGCTVAGFHGTPHRWTVG---RAVSHGCVRLFEENVQEVFELVEVGTP 187 >gi|47568212|ref|ZP_00238916.1| protein erfK/srfK precursor [Bacillus cereus G9241] gi|47555202|gb|EAL13549.1| protein erfK/srfK precursor [Bacillus cereus G9241] Length = 186 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVSIVKSKKSFQ 159 >gi|326390436|ref|ZP_08211994.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] gi|325993554|gb|EGD51988.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] Length = 327 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ V L+ RL G + F+ E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDKGPFVVNLQARLKSLGF--DPGPIDGIFERKTEEAVKAYQQSRGLPVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|183985449|ref|YP_001853740.1| hydrolase [Mycobacterium marinum M] gi|183178775|gb|ACC43885.1| hydrolase [Mycobacterium marinum M] Length = 406 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHG 150 L G+ S +V +R L G LD FD ++ AV+ FQ G Sbjct: 9 GDTLRCGDRSAAVAEIRAALAALGMLDNPDEDLSTGRHIALELFDPELDHAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALR 84 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 13/90 (14%) Query: 87 DILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFD 135 I+ + L LG V L+ RL G + + F Sbjct: 73 GIVGEATYRALREASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFY--TGLVDGYFG 130 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ +Q +G+ G+ TL ++ Sbjct: 131 LQTHNALMSYQREYGMSADGICGPETLRSL 160 >gi|311068995|ref|YP_003973918.1| hypothetical protein BATR1942_10280 [Bacillus atrophaeus 1942] gi|310869512|gb|ADP32987.1| hypothetical protein BATR1942_10280 [Bacillus atrophaeus 1942] Length = 176 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 43/165 (26%), Gaps = 57/165 (34%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G YV++N + L + + +V V G+ D TP I NP Sbjct: 21 NPLPGDPYVIINKASNQLAYIVDNQVEGIYQVATGKTDDLTPEGEFSITVKAANP----- 75 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 Y + NI N Sbjct: 76 -----------------YYRKKNIE----------------------------GGAPENP 90 Query: 308 MASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + I F +H T L F ++GC+R+ N Sbjct: 91 LGARWIGFDAEGTDGRIYGIHGTNRDELIGE---FVSNGCIRMHN 132 >gi|291437660|ref|ZP_06577050.1| lipoprotein [Streptomyces ghanaensis ATCC 14672] gi|291340555|gb|EFE67511.1| lipoprotein [Streptomyces ghanaensis ATCC 14672] Length = 277 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 5/144 (3%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G+S V+ L+ RL + L +D E AVK FQ + GL +G Sbjct: 67 PPRVLWSPGDSGRDVRELQARLRQAAWLFHGPT--GTYDGPTEEAVKGFQGKRGLPRTGR 124 Query: 157 VDSSTLEAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 D+ T + + R + + R + ++ + +L + +G+ Sbjct: 125 TDTVTWQRLLGMTREPGRWELYLMGGQPADAPDARCRTGRVLCISKSSRTLRWMVDGRTV 184 Query: 215 LRSTVIVGRVDRQTPILHSRINRI 238 V G T RI Sbjct: 185 STMPVRFGSEYTPTREGVFRIYWK 208 >gi|327191146|gb|EGE58190.1| hypothetical protein RHECNPAF_3350012 [Rhizobium etli CNPAF512] Length = 249 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 45/241 (18%) Query: 124 LDPSKGLSVAFDAYVESAVKL--FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 L V + V + + FQ R + + T+ A+N + ++ + Sbjct: 45 LGGGTVRPVVYQRPVVQSQQRGLFQRRA-IRQAPQPAPQTVSAINPGIPSIRHPIEPQFL 103 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + + ++++ L V +G R V VG+ + +I R Sbjct: 104 PQMVDYDTQEKPGTIVIDTNNRFLYLVMDGGKARRYGVGVGKPGFE-WAGAHKITRKQEW 162 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P +I ++ + R D Sbjct: 163 PDWTPPSEMISRE-----------AAKGHY------------------------LPARMD 187 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 G N + + + +H T P + +SGC+R+RN ++DL + Sbjct: 188 GGPENPLGARAMYLG-STLYRIHGTNAPWSIGS---AVSSGCIRLRNEDVVDLYDRVRVG 243 Query: 360 T 360 T Sbjct: 244 T 244 >gi|327393217|dbj|BAK10639.1| protein YbiS precursor [Pantoea ananatis AJ13355] Length = 380 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 LL +++N L G K + + +G + + TP+ + + R P Sbjct: 91 LLLPDAPREGIVINSAEMRLYYYPKGTKTVVVLPIGIGELGKDTPLNWTTTVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +++ + + N G Sbjct: 151 WTPTKAMHAE-----------------------------------YASRGENLPAVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL P Sbjct: 176 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KWLFDHVPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|291616791|ref|YP_003519533.1| YbiS [Pantoea ananatis LMG 20103] gi|291151821|gb|ADD76405.1| YbiS [Pantoea ananatis LMG 20103] Length = 380 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 LL +++N L G K + + +G + + TP+ + + R P Sbjct: 91 LLLPDAPREGIVINSAEMRLYYYPKGTKTVVVLPIGIGELGKDTPLNWTTTVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +++ + + N G Sbjct: 151 WTPTKAMHAE-----------------------------------YASRGENLPAVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL P Sbjct: 176 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KWLFDHVPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|15616233|ref|NP_244538.1| cell wall lytic activity [Bacillus halodurans C-125] gi|10176295|dbj|BAB07390.1| cell wall lytic activity [Bacillus halodurans C-125] Length = 416 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 28/164 (17%) Query: 27 VEKPIHASVLDEIINESY-----HSIVNDRFDNFLARVDMGIDSDIP---------IISK 72 + + + + N R+ + I Sbjct: 123 NSTILRFGSSGQAVRDLQEKLKAKGYYNHSITGQYGRITTEAVREFQRANRLTVDGIAGP 182 Query: 73 ETIAQT-EKAIA----FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 +T+A +A A Y + + L G+ +V+ L+ L G S Sbjct: 183 QTLAALTNQAPAASAPQYNAPVQQ-------TTVLRQGSRGDAVRDLQRSLKDLGYYKSS 235 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + F A +AV+ FQ + GL G+ TL A++V Sbjct: 236 --IDGIFGAGTTTAVREFQRKMGLTVDGVAGPQTLNALHVNPTP 277 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G S V+ L+E L G + F + E AV+ FQM+HGL G Sbjct: 32 ALGDQTLRKGQSHPDVKELQEALKKKGFF-NYHTSTGYFGSITEDAVREFQMKHGLQVDG 90 Query: 156 MVDSSTLEAM 165 + TL A+ Sbjct: 91 IAGPQTLNAL 100 >gi|302531346|ref|ZP_07283688.1| N-acetylmuramoyl-L-alanine amidase [Streptomyces sp. AA4] gi|302440241|gb|EFL12057.1| N-acetylmuramoyl-L-alanine amidase [Streptomyces sp. AA4] Length = 382 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G++ V +R L L P G FD VE AV+ FQ R GL G+V Sbjct: 2 RVLRRGDAGPDVAEIRSILAGMDLLPPVAGTERYNTFDVAVEQAVRAFQQRRGLITDGVV 61 Query: 158 DSSTLEAMN 166 +T +A+ Sbjct: 62 GPATYQALK 70 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 18/116 (15%) Query: 75 IAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERL 118 + Q +A + +++ G + L HLG+ V L+ERL Sbjct: 42 VEQAVRAFQQRRGLITDGVVGPATYQALKGASYHLGSRPLQYLLSSPVHGDDVFTLQERL 101 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 G + F E A++ FQ L G+ +T+ ++ R R Sbjct: 102 TELGF--DAGRPDGYFGPQTERALRTFQRDMRLTSDGICGPATIRELHRLSSPRAR 155 >gi|228941312|ref|ZP_04103865.1| hypothetical protein bthur0008_39510 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974244|ref|ZP_04134814.1| hypothetical protein bthur0003_39980 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980835|ref|ZP_04141140.1| hypothetical protein bthur0002_40000 [Bacillus thuringiensis Bt407] gi|228779004|gb|EEM27266.1| hypothetical protein bthur0002_40000 [Bacillus thuringiensis Bt407] gi|228785584|gb|EEM33593.1| hypothetical protein bthur0003_39980 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818471|gb|EEM64543.1| hypothetical protein bthur0008_39510 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941930|gb|AEA17826.1| protein erfK/srfK precursor [Bacillus thuringiensis serovar chinensis CT-43] Length = 186 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDSFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|229163086|ref|ZP_04291042.1| hypothetical protein bcere0009_38550 [Bacillus cereus R309803] gi|228620492|gb|EEK77362.1| hypothetical protein bcere0009_38550 [Bacillus cereus R309803] Length = 186 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|42783267|ref|NP_980514.1| hypothetical protein BCE_4221 [Bacillus cereus ATCC 10987] gi|42739195|gb|AAS43122.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|324328057|gb|ADY23317.1| hypothetical protein YBT020_20445 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 186 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|317131428|ref|YP_004090742.1| spore cortex-lytic enzyme [Ethanoligenens harbinense YUAN-3] gi|315469407|gb|ADU26011.1| spore cortex-lytic enzyme [Ethanoligenens harbinense YUAN-3] Length = 231 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG++ V++++ RL G + + + A +AV FQ ++GL G+ S+TL Sbjct: 41 RLGSTGSEVRQIQTRLKSWGYY--TGTVDGVYGAGTRAAVIAFQRKNGLTADGVAGSATL 98 Query: 163 EAMNVPV 169 A+ +P Sbjct: 99 RAIGLPA 105 >gi|229075857|ref|ZP_04208833.1| hypothetical protein bcere0024_38670 [Bacillus cereus Rock4-18] gi|229098620|ref|ZP_04229560.1| hypothetical protein bcere0020_38480 [Bacillus cereus Rock3-29] gi|229117646|ref|ZP_04247017.1| hypothetical protein bcere0017_39190 [Bacillus cereus Rock1-3] gi|228665825|gb|EEL21296.1| hypothetical protein bcere0017_39190 [Bacillus cereus Rock1-3] gi|228684699|gb|EEL38637.1| hypothetical protein bcere0020_38480 [Bacillus cereus Rock3-29] gi|228707172|gb|EEL59369.1| hypothetical protein bcere0024_38670 [Bacillus cereus Rock4-18] Length = 186 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKIFPVATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + KT + Sbjct: 141 DRIPIGTKVWIVKSKKTFQ 159 >gi|294501172|ref|YP_003564872.1| hypothetical protein BMQ_4428 [Bacillus megaterium QM B1551] gi|294351109|gb|ADE71438.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 174 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 48/182 (26%), Gaps = 59/182 (32%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 Y+++N + L ++N ++ V G+ TP + NP Sbjct: 20 NPLPNDPYIIINKQSNELAYIQNKEIKQIIKVATGKTVNLTPEGEFTVTVKAVNP----- 74 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 Y + NNI N Sbjct: 75 -----------------YYRRNNIE----------------------------GGAPQNP 89 Query: 308 MASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + I F +H T +P + ++GC+RV N + L + T Sbjct: 90 LGVRWIGFDARETDGRIYGIHGTNQPDSIGK---YVSNGCIRVENREVSHLYDQVPLGTK 146 Query: 362 TW 363 W Sbjct: 147 VW 148 >gi|219668958|ref|YP_002459393.1| peptidoglycan-binding protein [Desulfitobacterium hafniense DCB-2] gi|219539218|gb|ACL20957.1| Peptidoglycan-binding domain 1 protein [Desulfitobacterium hafniense DCB-2] Length = 391 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 2/79 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV +L++ L G F E+AV FQ GL P G+V Sbjct: 243 TLRQGSRGPSVVQLQQLLTARGF--NPGAADGIFGPRTEAAVIAFQRSSGLTPDGIVGIR 300 Query: 161 TLEAMNVPVDLRIRQLQVN 179 T A+ V N Sbjct: 301 TWTALGVTCTTPPPPPSQN 319 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 20/152 (13%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + + + + F+ A P IA + I+ Sbjct: 243 TLRQGSRGPSVVQLQQLLTARGFNPGAADGI-----FGPRTEAAVIAFQRSSGLTPDGIV 297 Query: 90 SRGGWPELPIR-------------PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 W L + L +G+ SV+ L+ L G + F + Sbjct: 298 GIRTWTALGVTCTTPPPPPSQNCPTLRMGSRGASVKELQSLLKAQGF--SPGNIDGIFGS 355 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++AV FQ GL G+V T A+ V Sbjct: 356 RTQAAVIAFQKSRGLVQDGIVGIRTWTALGVN 387 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G + SV +L++ L G + F E+AV FQ GL G+V Sbjct: 160 PCPTLRQGATGPSVVQLQQLLTSHGF--SPGAIDGIFGPRTEAAVIAFQGSRGLVQDGIV 217 Query: 158 DSSTLEAMNVP 168 T A+ V Sbjct: 218 GVRTWTALGVN 228 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ SV L++ L G + F +AV FQ GL G+V Sbjct: 84 PCPVLRQGSQGPSVVHLQQLLTSHGF--SPGAIDGIFGPRTHAAVVAFQGSRGLVQDGVV 141 Query: 158 DSSTLEAMNVP 168 T A+ V Sbjct: 142 GVKTWTALGVN 152 >gi|75907389|ref|YP_321685.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75701114|gb|ABA20790.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 412 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV+ L+++L +G ++ +D E AV+ FQ GL G+V +S Sbjct: 65 ALERGDQGPSVRNLQQKLQQAGFY--QAPVTQVYDFSTEEAVRRFQEAAGLPVDGVVGAS 122 Query: 161 TL----EAMNVPVDLRIRQLQV 178 TL + + PV +++Q Sbjct: 123 TLEKLDQWRSTPVANQVQQYTT 144 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ L++RL ++G + F E AVK FQ + LD G+V +T Sbjct: 204 LVKGDEGEAVRSLQQRLRVAGFYYGNAT--GVFGPITEEAVKRFQTAYKLDVDGIVGPAT 261 Query: 162 LEAMN 166 + + Sbjct: 262 IRRLP 266 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G+ +V+ L+E+LI +G L + F Y AVK FQ + L SG+ Sbjct: 284 KDKLTVGDRGEAVRVLQEQLIQAGYL--QGQPNGYFGPYTAEAVKRFQAANYLSASGIAG 341 Query: 159 SSTLEAMNVPVDL 171 +T ++ ++ Sbjct: 342 PTTRAKLHSSLNQ 354 >gi|89894526|ref|YP_518013.1| hypothetical protein DSY1780 [Desulfitobacterium hafniense Y51] gi|89333974|dbj|BAE83569.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 404 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 2/79 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV +L++ L G F E+AV FQ GL P G+V Sbjct: 256 TLRQGSRGPSVVQLQQLLTARGF--NPGAADGIFGPRTEAAVIAFQRSSGLTPDGIVGIR 313 Query: 161 TLEAMNVPVDLRIRQLQVN 179 T A+ V N Sbjct: 314 TWTALGVTCTTPPPPPSQN 332 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 20/152 (13%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + + + + F+ A P IA + I+ Sbjct: 256 TLRQGSRGPSVVQLQQLLTARGFNPGAADGI-----FGPRTEAAVIAFQRSSGLTPDGIV 310 Query: 90 SRGGWPELPIR-------------PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 W L + L +G+ SV+ L+ L G + F + Sbjct: 311 GIRTWTALGVTCTTPPPPPSQNCPTLRMGSRGASVKELQSLLKAQGF--SPGNIDGIFGS 368 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++AV FQ GL G+V T A+ V Sbjct: 369 RTQAAVIAFQKSRGLVQDGIVGIRTWTALGVN 400 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G + SV +L++ L G + F E+AV FQ GL G+V Sbjct: 168 PCPTLRQGATGPSVVQLQQLLTSHGF--SPGAIDGIFGPRTEAAVIAFQGSRGLVQDGIV 225 Query: 158 DSSTLEAMNVP 168 T A+ V Sbjct: 226 GVRTWTALGVN 236 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ SV L++ L G + F +AV FQ GL G+V Sbjct: 92 PCPVLRQGSQGPSVVHLQQLLTSHGF--SPGAIDGIFGPRTHAAVVAFQGSRGLVQDGVV 149 Query: 158 DSSTLEAMNVP 168 T A+ V Sbjct: 150 GVKTWTALGVN 160 >gi|325290484|ref|YP_004266665.1| spore cortex-lytic enzyme [Syntrophobotulus glycolicus DSM 8271] gi|324965885|gb|ADY56664.1| spore cortex-lytic enzyme [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ L R L G+ V L++RL + G + F +AV+LFQ HGL Sbjct: 24 GYSALGDRTLSRGSRGPEVVDLQKRLSMLGY--VTGPQDGIFGRKTNAAVRLFQKEHGLT 81 Query: 153 PSGMVDSSTLEAMNV 167 GM ++T+ + Sbjct: 82 VDGMAGTNTIRELKR 96 >gi|312898059|ref|ZP_07757465.1| 3D domain protein [Megasphaera micronuciformis F0359] gi|310620884|gb|EFQ04438.1| 3D domain protein [Megasphaera micronuciformis F0359] Length = 166 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 3/102 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG + V ++ LI +G L + G F + ++AV+ FQ HGL G+V + T+ Sbjct: 6 LGMTGTRVASVQNMLIGTGYL--TDGADGVFGSGTQAAVQRFQADHGLTADGIVGTQTMN 63 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR-YVLVNIPAAS 204 A++ I +M G Y P A Sbjct: 64 ALSTASGQPIPVDNTIVMEATAYTADDPGNSGYTATGQPLAY 105 >gi|226940770|ref|YP_002795844.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] gi|226715697|gb|ACO74835.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] Length = 235 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 42/149 (28%), Gaps = 36/149 (24%) Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN-NTYMHDTPEPILFNNVVRFE 339 V + PG N + I F MH T P +V F Sbjct: 14 VPRSIQQEMARAGKTVQTVVPPGPQNPLGKVFIRFGEPGLGLGMHGTNAP---GSVPGFR 70 Query: 340 TSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GCVR+RN +DL ++ VPV +Y S Sbjct: 71 SHGCVRLRNEDALDLAS--------------------------RVRYGVPVSVIYQSVLL 104 Query: 398 PKD--SIIQF--RDDIYGLDNVHVGIIPL 422 +D + D YG + I Sbjct: 105 NQDARGDVWMTAFADRYGKTTANAAQIRT 133 >gi|220918200|ref|YP_002493504.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956054|gb|ACL66438.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 282 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 54/192 (28%), Gaps = 51/192 (26%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVI 220 L+A P V + +L V+VN+ L + G L + Sbjct: 59 LDAFVPPPG------TVATVPTAWILPAAAEAGTVVVNLSEMRLYYLRPGAGPLLSFPIG 112 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 V TP+ + + + +P W +I ++D Sbjct: 113 VAVEAGATPLGVLTVEQKLVSPTWYPTPAIRRED-------------------------- 146 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P PG N + S + +H T P F R + Sbjct: 147 -------------PELPAAVPPGPENPLGSHALRLSVP-TLLIHGTNRP--FGVGRR-VS 189 Query: 341 SGCVRVRNIIDL 352 GC+R+ D+ Sbjct: 190 HGCIRLY-PEDM 200 >gi|261404540|ref|YP_003240781.1| peptidoglycan-binding domain 1 protein [Paenibacillus sp. Y412MC10] gi|261281003|gb|ACX62974.1| Peptidoglycan-binding domain 1 protein [Paenibacillus sp. Y412MC10] Length = 159 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GWP L G+S V+ L+ L SG + +F A V SAVK FQ R GL Sbjct: 36 GWPT-----LRQGSSGGYVRALQSNLWASGYQSTVGSIDGSFGAGVTSAVKAFQSREGLT 90 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQ 177 G+V S + AMN V + + Sbjct: 91 SDGVVGSGSWNAMNKYVTTVVTDYE 115 >gi|289811686|ref|ZP_06542315.1| hypothetical protein Salmonellaentericaenterica_48202 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 216 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 44/168 (26%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G + + +G++ + TPI +++ R P W + + Sbjct: 89 IIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE 148 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G N M + Sbjct: 149 -----------------------------------YRAAGEPLPAVVPAGPDNPMGLYAL 173 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 H T F +R + GCVR+RN D +L ++ P Sbjct: 174 YIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLRN--DDIKFLFENVP 214 >gi|300791154|ref|YP_003771445.1| N-acetylmuramoyl-L-alanine amidase [Amycolatopsis mediterranei U32] gi|299800668|gb|ADJ51043.1| N-acetylmuramoyl-L-alanine amidase [Amycolatopsis mediterranei U32] Length = 382 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGMV 157 R L G++ V +R L L P G FD VE AV+ FQ R GL G+V Sbjct: 2 RVLRRGDAGPDVAEIRSILAGMDLLPPVTGTDDYDTFDVAVEHAVRAFQQRRGLMTDGIV 61 Query: 158 DSSTLEAMN 166 +T +A+ Sbjct: 62 GPATFQALK 70 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 14/109 (12%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLD 125 Q + + I+ + L HLG+ V L+ERL G Sbjct: 50 QQRRGLMT-DGIVGPATFQALKGASYHLGSRPLSYMIASPVHGDDVFTLQERLTELGF-- 106 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 + F E A+K FQ L P GM +T+ ++ R R Sbjct: 107 DAGRPDGYFGPQTERALKTFQRDMRLTPDGMCGPATIRELHRLSSPRAR 155 >gi|325927742|ref|ZP_08188970.1| putative chitinase [Xanthomonas perforans 91-118] gi|325541943|gb|EGD13457.1| putative chitinase [Xanthomonas perforans 91-118] Length = 584 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 12/121 (9%) Query: 64 DSDIPIISKETI---AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 D++ + S ET +A A + + G L G++S V +L++ L Sbjct: 356 DANGKLTSPETFWNQGHQHEAGARHTQAAAASG-----TGALRHGDNSQDVGKLQQDLNR 410 Query: 121 SGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQL 176 G D F AV FQ +HGL G+V T A+ P R Q+ Sbjct: 411 LGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALAAQPAQTREAQV 470 Query: 177 Q 177 Sbjct: 471 A 471 >gi|186684193|ref|YP_001867389.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466645|gb|ACC82446.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 361 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 5/154 (3%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH 103 + + +++ + S +P++ T + A I + L Sbjct: 28 RQKSWWTKRSKSFSAIEILLLSAMPLLIASTPLVSIAAPQK---IAQINPGDSISRPNLK 84 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+ V L+ L + G + + SAV F+ GL+P G+VD+ST + Sbjct: 85 VGSQGERVSELQAALKLLGFYS--GAVDGIYSENTASAVARFKQAAGLNPDGVVDASTWQ 142 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + + + + R + + Sbjct: 143 RLFPNQPVAASTIPSSQPRFNSATNFPVPTQASS 176 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V +L+++L G L F E+AVK Q R+GL+ G+V ST Sbjct: 297 LRIGLRGSEVVKLQQQLKKLGFLKGDADGD--FGETTETAVKAAQKRYGLEADGVVGGST 354 Query: 162 LEAM 165 E + Sbjct: 355 WEVL 358 >gi|209548063|ref|YP_002279980.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533819|gb|ACI53754.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 249 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 41/204 (20%) Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ R + + V T+ A+N + ++ + + + ++++ Sbjct: 68 FQRRV-IRQAPQVAPQTVSAINPGIPAIRHPIEPQFLPQMVDYDTEEKPGTIVIDTNNRF 126 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V +G R V VG+ + +I R P W P +I ++ Sbjct: 127 LYLVMDGGKARRYGVGVGKPGFE-WAGAHKITRKQEWPDWTPPSEMISRE---------- 175 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + R D G N + + + +H Sbjct: 176 -AAKGHY------------------------LPARMDGGAENPLGARAMYLG-STLYRIH 209 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T P + +SGC+R+RN Sbjct: 210 GTNAPWSIGS---AVSSGCIRLRN 230 >gi|291566493|dbj|BAI88765.1| peptidoglycan binding domain protein [Arthrospira platensis NIES-39] Length = 492 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L LG+ V L++RL G + + FD AV FQ +G+ +G V Sbjct: 299 PSSILVLGSRGADVIALQQRLQQLGYY--TGMIDGVFDESTRVAVVRFQRDNGITQTGQV 356 Query: 158 DSSTLEAMNVPVDLR 172 +T + R Sbjct: 357 GPTTQFHLARATTQR 371 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V +++ RL G L + F ++AV FQ + L G+V + Sbjct: 52 VLAIGDFGPEVTQIQNRLRELGYLSANAT--GYFGEETQNAVIQFQRDNRLVQDGIVGPN 109 Query: 161 TLEAMNVPVD 170 T+ A+ Sbjct: 110 TVVALIATNQ 119 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 16/90 (17%) Query: 86 QDILSRGGWPELPIRP--------------LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + R P +P P + +GN+ V+R++ RL G + ++ Sbjct: 366 RATTQRPIIPVVPAGPGSVVRPVVTNPNTYITIGNAGEDVRRIQRRLRELGFY--NGPIN 423 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 FD ++AV FQ + + +G+V +T Sbjct: 424 GFFDGQTQNAVIQFQQAYNITTTGIVGPTT 453 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 91 RGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G L L G+ V ++ L G ++ +D AV+ FQM + Sbjct: 201 NRGTGSLAGNVSLGPGSFGPIVGLVQRELQRLGFFP--GQITNFYDEVTFQAVRNFQMVN 258 Query: 150 GLDPSGMVDSST 161 GL P+G + +T Sbjct: 259 GLTPTGFIGPTT 270 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+S V L+ RL G + + F +AV FQ + + +G+V T Sbjct: 139 LGLGDSGPGVTNLQNRLRNLGFFNNNST--GYFGPITRNAVIRFQQANSIAATGLVTEDT 196 Query: 162 LE 163 L Sbjct: 197 LA 198 >gi|75761963|ref|ZP_00741882.1| Hypothetical exported protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902663|ref|ZP_04066813.1| hypothetical protein bthur0014_38380 [Bacillus thuringiensis IBL 4222] gi|74490543|gb|EAO53840.1| Hypothetical exported protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856978|gb|EEN01488.1| hypothetical protein bthur0014_38380 [Bacillus thuringiensis IBL 4222] Length = 186 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L + G +++VN L +++GK+ S V G+ + TP + Sbjct: 17 WPLGENPRAGDPFIIVNKATNKLAYIDDGKIQKVSPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|51892227|ref|YP_074918.1| spore cortex-lytic enzyme precursor [Symbiobacterium thermophilum IAM 14863] gi|51855916|dbj|BAD40074.1| spore cortex-lytic enzyme precursor [Symbiobacterium thermophilum IAM 14863] Length = 224 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G + +V+ +++RL G + F E AV+ FQ ++GL G+V Sbjct: 30 TLRRGATGDAVREVQQRLRDWGYY--EGQVDGRFGPLTEKAVRFFQSKNGLTVDGVVGPE 87 Query: 161 TLEAMN 166 T A+ Sbjct: 88 TWAALG 93 >gi|304313194|ref|YP_003812792.1| hypothetical protein HDN1F_35800 [gamma proteobacterium HdN1] gi|301798927|emb|CBL47163.1| Hypothetical protein HDN1F_35800 [gamma proteobacterium HdN1] Length = 458 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 60/202 (29%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAV----------ENGKVGLR--------STVIV 221 L+ + +L + ++VN+ A L GK V + Sbjct: 135 LIPSQWILP-NAPRKGIVVNLAAMRLFYYVPPTKASAKSRKGKGTHSSGPIRVITHPVGI 193 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 GRV TP +RI P W +I+++ Sbjct: 194 GRVKWNTPQGTTRIVAKNEAPAWRPTAAILKE---------------------------- 225 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 ++ PG N M + + +H T +P T Sbjct: 226 -------HAEMGDPLPAVVPPGPDNPMGNYVMRLGWPE-YAIHGTNKPASIG---LRGTH 274 Query: 342 GCVRV--RNIIDLDVWLLKDTP 361 GC+R+ +I L + +TP Sbjct: 275 GCLRMYPEDIEALFQSVPVNTP 296 >gi|297531427|ref|YP_003672702.1| NLP/P60 protein [Geobacillus sp. C56-T3] gi|297254679|gb|ADI28125.1| NLP/P60 protein [Geobacillus sp. C56-T3] Length = 450 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 57/167 (34%), Gaps = 13/167 (7%) Query: 23 GLSLVEKPIHASVLDEIINES---YHSIVNDRFDNFLARVDMGIDSD--IPIISKETIAQ 77 L++ + S L + + + + + A +P + Sbjct: 98 TLAIGSRGAAVSDLQRWLKQLGYFRYPQITGYYGAVTADAVKQFQQANGLPATGRAD--- 154 Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + + + P L +G+ V++L+++L G S ++ + Sbjct: 155 -RATLERLKQKATSQ--PATSSDALTIGSRGDDVRKLQQQLKQLGYFTYS-DITGYYGVL 210 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 AV+ FQ +GL +G VD+ T + V + + + R + Sbjct: 211 TADAVRRFQRDNGLPVTGAVDNQTAARLASAVKAKTTSPAL-IERER 256 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SS + ++++RL G + F A E AVK FQ L +G+VD +T Sbjct: 29 KKGMSSPEITQIQQRLKEQGFFT-YPKATGYFGAITEEAVKAFQRAMNLPATGIVDDATY 87 Query: 163 EAMNVPVD 170 + P Sbjct: 88 AKLKKPAS 95 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ +V L+ L G ++ + A AVK FQ +GL +G Sbjct: 95 SNDTLAIGSRGAAVSDLQRWLKQLGYF-RYPQITGYYGAVTADAVKQFQQANGLPATGRA 153 Query: 158 DSSTLEAMNVPVD 170 D +TLE + Sbjct: 154 DRATLERLKQKAT 166 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G V+R++ +L G ++ + AV+ FQ L +G+VD Sbjct: 258 AVRLSIGALGEDVKRIQTKLKELGYF--WTAITGYYGTATADAVRRFQQAAQLPATGVVD 315 Query: 159 SSTLEA-MNVPVDLRIRQLQV 178 T E + ++ +++ Sbjct: 316 GETYERLIGQAPAAKLDVIEL 336 >gi|54294361|ref|YP_126776.1| hypothetical protein lpl1430 [Legionella pneumophila str. Lens] gi|53754193|emb|CAH15670.1| hypothetical protein lpl1430 [Legionella pneumophila str. Lens] Length = 244 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 42/175 (24%) Query: 190 KMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + V++N+ L + V + V +G+ +TP+ SRI NP W Sbjct: 93 NVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTV 152 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + PG N + Sbjct: 153 K------LQKAAESIGA-----------------------------PIPSEFPPGPHNPL 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + +H + ++GC+R+ +I L + TP Sbjct: 178 GQHVLRLGWP-AILIHGSNRVDGIGAK---VSAGCIRMLPDDIEHLYSLVSVGTP 228 >gi|253687096|ref|YP_003016286.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753674|gb|ACT11750.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 356 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TPI + + R P Sbjct: 89 LILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPT 148 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + G Sbjct: 149 WTPTAKMHAE-----------------------------------YAARGETLQKVFPAG 173 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + H T F +R + GCVR+R D+ +L P Sbjct: 174 PDNPMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KYLFDHVPVG 226 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R ++ V+ + V++ + Sbjct: 227 TRVQFINEPVKATVEPDGSRYVEVHNPL 254 >gi|229047844|ref|ZP_04193423.1| hypothetical protein bcere0027_38210 [Bacillus cereus AH676] gi|228723505|gb|EEL74871.1| hypothetical protein bcere0027_38210 [Bacillus cereus AH676] Length = 186 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 73 -----------------AKDPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|333008911|gb|EGK28371.1| peptidoglycan-binding domain 1 domain protein [Shigella flexneri K-272] gi|333020221|gb|EGK39491.1| peptidoglycan-binding domain 1 domain protein [Shigella flexneri K-227] Length = 74 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 2 QDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 56 >gi|282882201|ref|ZP_06290840.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus lacrimalis 315-B] gi|281297966|gb|EFA90423.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus lacrimalis 315-B] Length = 269 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 55/211 (26%), Gaps = 64/211 (30%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL--RYVLVN 199 +K FQ + SG +D+ T EA+ N + ++ VN Sbjct: 46 IKKFQATMNIPISGTLDNKTKEAL------------YNKDYKVWDMVTNPPSKGYWIAVN 93 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L K + V +G QTP +I + NP W Sbjct: 94 KSRRILTMYMGDKSLGKYPVTLGTSATQTPSGRGKIGNMHKNPAW--------------- 138 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR- 318 + + N + + + Sbjct: 139 ---------GGM---------------------NGKYKPVAADDPKNPLGERWMGLSLKG 168 Query: 319 -NNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H +P + ++GC+R+ N Sbjct: 169 FSGYGIHGNIKPHQIG---GYYSNGCIRMFN 196 >gi|68537190|ref|YP_251895.1| putative hydrolase [Corynebacterium jeikeium K411] gi|260579551|ref|ZP_05847422.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium jeikeium ATCC 43734] gi|68264789|emb|CAI38277.1| putative hydrolase [Corynebacterium jeikeium K411] gi|258602322|gb|EEW15628.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium jeikeium ATCC 43734] Length = 395 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 37/220 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G L+ +G FD + A+K FQ + Sbjct: 6 LQVGDRSPRVAEVRGTLARLGLLEGYEGDATGSKSQRWTSEEEVFDETLAEALKAFQQQR 65 Query: 150 GLDPSGMVDSSTLEAMNV---PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 G+ G + TL A+ + R+ LQ N + + ++ Sbjct: 66 GIIADGTITPGTLRALREASYTLGARVLSLQSNQ-----FVGDDVAQLQTQLHDLGFYTS 120 Query: 207 AVENGKVGLRSTVIVGRVDRQ--------TPILHSRINRIMFNPYWVIPRSIIQKDMM-- 256 V+ + +V P ++ + P+SI +K+ + Sbjct: 121 RVDGHFGPRTHSAVVNYQLNYGLNNDGVVGPDTLRALSYLGRRITGGSPQSIREKEQIRS 180 Query: 257 -------ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + DP + +++D ++ EE+ W+ Sbjct: 181 AGPQLTGKRVVIDPGLGGSDKGYIVDGPFGQISEEEILWD 220 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 27/158 (17%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS----KETIAQTEKAIAFYQ 86 + + E ++ G S ET+A+ KA + Sbjct: 6 LQVGDRSPRVAEVRGTLARLGLLEGYEGDATGSKSQRWTSEEEVFDETLAEALKAFQQQR 65 Query: 87 DILSRGGWPELPIRPLH--------LGNS----------SVSVQRLRERLIISGDLDPSK 128 I++ G + L LG V +L+ +L G Sbjct: 66 GIIADG---TITPGTLRALREASYTLGARVLSLQSNQFVGDDVAQLQTQLHDLGFYTSR- 121 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + F SAV +Q+ +GL+ G+V TL A++ Sbjct: 122 -VDGHFGPRTHSAVVNYQLNYGLNNDGVVGPDTLRALS 158 >gi|307129489|ref|YP_003881505.1| Protein ybiS [Dickeya dadantii 3937] gi|306527018|gb|ADM96948.1| Protein ybiS precursor [Dickeya dadantii 3937] Length = 365 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 45/298 (15%), Positives = 82/298 (27%), Gaps = 80/298 (26%) Query: 124 LDPSKGLSVAFDAYVE--------SAVKLF--QMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 S ++ A++ F Q + GL L N +D+ + Sbjct: 25 YPLPAPNSRLVGENIQVTIPSDSTDALEHFAAQYQMGLSN--------LLEANPGIDVYL 76 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-L 231 + + ++L+ +++N L G K + + +G++ + TPI Sbjct: 77 PKPGSTMTVPQQLILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGQLGKDTPINW 136 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 + + R P W ++ + Y Sbjct: 137 VTSVQRKKERPTWTPTAAMHAE-----------YAARGEF-------------------- 165 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 G N M + + H T F +R + GCVR+R+ Sbjct: 166 ----LPQVYPAGPDNPMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLRDKD- 215 Query: 352 LDVWLLKDTPTWSR-YHIEEVVK-----------------TRKTTPVKLATEVPVHFV 391 +L P +R I E VK +R T VP+ Sbjct: 216 -IKYLFDHVPVGTRVQFINEPVKATVEPDGSRYVEVHNPLSRTEEEFNSDTPVPLKLT 272 >gi|307944091|ref|ZP_07659432.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307772437|gb|EFO31657.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 401 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 54/164 (32%), Gaps = 13/164 (7%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-L 102 + ++ + + + P A + A YQ I G L Sbjct: 164 KSGLADELRERDFRAIAR--RYNGPGQVSHYAALMQTA---YQRIAKGGASKFNERGRML 218 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ V+ L+ERLI G F V FQ+ HGL P G+V T Sbjct: 219 RLGSDGYRVKALQERLITLGY---HLQADGDFGPATRRQVVAFQVDHGLKPDGIVGPLTE 275 Query: 163 ----EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 EA+ + + ++ + ++K Q + L Sbjct: 276 ERVDEAVPINASKIDGRTKLTVSDLRKRGSQTIKSADRLQQGAG 319 >gi|184201995|ref|YP_001856202.1| putative N-acetylmuramoyl-L-alanine amidase [Kocuria rhizophila DC2201] gi|183582225|dbj|BAG30696.1| putative N-acetylmuramoyl-L-alanine amidase [Kocuria rhizophila DC2201] Length = 411 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG-----DLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L G + V LRERL+ +G + FD V+ AV+ FQ R GL Sbjct: 6 PGAALRHGMTDRRVAGLRERLVRAGADDAALSPDAATDPTVFDQRVDGAVRGFQQRKGLI 65 Query: 153 PSGMVDSSTLEAMN 166 G+V T A+N Sbjct: 66 VDGVVGPDTESALN 79 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 48/173 (27%), Gaps = 21/173 (12%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + + D + +V D+ D D P + + + + + Sbjct: 7 GAALRHGMTDRRVAGLRERLVRAGADDAALSPDAATD---PTVFDQRVDGAVRGFQQRKG 63 Query: 88 ILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLS 131 ++ G L LG+ V+ L+ L + G L Sbjct: 64 LIVDGVVGPDTESALNDAQYALGDRPLSHQRDTPMHGDDVEELQNNLSLLGFY--YGHLD 121 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 F E AVK Q G+ G+V TL + +L + Sbjct: 122 GTFARQTEYAVKELQSSLGVPEDGVVGLDTLTGLARVSKKITTSKAFSLRDHR 174 >gi|218288737|ref|ZP_03493000.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius LAA1] gi|218241095|gb|EED08271.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius LAA1] Length = 112 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 15/119 (12%) Query: 254 DMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 +++ L YL + + G+ V + + P + Sbjct: 5 EIIVDLSDRRLYLLEAGKVIRSFPVGIGRMVTRTPIGQYTIANKE------PNPGGPFGA 58 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + +H T +P + GC+R+ N + WL P + I Sbjct: 59 YWMGLSKPH-YGIHGTNDPSSIGK---LVSHGCIRMYNKDVI--WLAHTVPLGTPVTIR 111 >gi|110635068|ref|YP_675276.1| peptidoglycan binding domain-containing protein [Mesorhizobium sp. BNC1] gi|110286052|gb|ABG64111.1| Peptidoglycan-binding domain 1 [Chelativorans sp. BNC1] Length = 300 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 18/134 (13%) Query: 38 EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG--GWP 95 ++ AR + P ++ + A+A Y+ + + P Sbjct: 154 GLMEALRRRDW-----AAFARG-----YNGPGFARNSY-HLRLALA-YRRLAGQAVRSAP 201 Query: 96 ELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PL G+ +V+ L+ L +G F A + A+ FQ HGL Sbjct: 202 SQATTPLIRSGDRGAAVRNLQILLSAAGY---PVSADGIFGAKTQQALLSFQRHHGLPAD 258 Query: 155 GMVDSSTLEAMNVP 168 G+ +T++ + Sbjct: 259 GIAGPATMKVLQGS 272 >gi|317130360|ref|YP_004096642.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cellulosilyticus DSM 2522] gi|315475308|gb|ADU31911.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cellulosilyticus DSM 2522] Length = 318 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 42/144 (29%), Gaps = 14/144 (9%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 + + + + + N + P I+ Sbjct: 182 LRLGSRGQAVRDLQEKLTNQGYHLGSIDGI-----FGPATENAVRKFQRDRGLTIDGIVG 236 Query: 91 RGG-------WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 + + L G+ +V+ L+ L G + G+ F E AVK Sbjct: 237 QNTLQALEKTTATVSSTTLRRGSRGEAVRSLQSDLHSLGY--ETGGIDGIFGPATERAVK 294 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ +G+ G+V + TL + Sbjct: 295 SFQRTNGITVDGIVGNQTLSKLKQ 318 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ +V+ L+E+L G + F E+AV+ FQ GL G+V +T Sbjct: 182 LRLGSRGQAVRDLQEKLTNQGY--HLGSIDGIFGPATENAVRKFQRDRGLTIDGIVGQNT 239 Query: 162 LEAMNVPVD 170 L+A+ Sbjct: 240 LQALEKTTA 248 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 59/187 (31%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 +++++N + L E+ K+ +V GR + TP +I + Sbjct: 28 NNQFIIINKASNELAFFEDSKLQKVFSVGTGRENSMTPEGTFKIVNKI------------ 75 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 ++ Y N + N + Sbjct: 76 ---------KNRPYYSGN---IAGGD--------------------------PQNPLGDR 97 Query: 312 KIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + +R +H + + ++GCVR+ N WL + Sbjct: 98 WLGINARGTWGTTYAIHGNNDASSIG---GYVSAGCVRMHNSE--VHWLYDRVKINTPVI 152 Query: 368 IEEVVKT 374 I ++ Sbjct: 153 ITNSSQS 159 >gi|302389944|ref|YP_003825765.1| spore cortex-lytic enzyme [Thermosediminibacter oceani DSM 16646] gi|302200572|gb|ADL08142.1| spore cortex-lytic enzyme [Thermosediminibacter oceani DSM 16646] Length = 228 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L G+ V +L+ RL G + F +SAV FQ G+ G Sbjct: 27 TLGDRILKQGSRGDDVAQLQYRLNTLGFWC--GKVDGIFGPKTKSAVMKFQSAKGIKVDG 84 Query: 156 MVDSSTLEAMNVPVDLR 172 +V TL AM V R Sbjct: 85 IVGPQTLSAMGVYKASR 101 >gi|206970927|ref|ZP_03231878.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|229192362|ref|ZP_04319326.1| hypothetical protein bcere0002_40150 [Bacillus cereus ATCC 10876] gi|206733699|gb|EDZ50870.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|228591142|gb|EEK48997.1| hypothetical protein bcere0002_40150 [Bacillus cereus ATCC 10876] Length = 186 Score = 70.4 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + + Sbjct: 17 WPLGDNPRAGDTFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGNFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|298492542|ref|YP_003722719.1| ErfK/YbiS/YcfS/YnhG family protein ['Nostoc azollae' 0708] gi|298234460|gb|ADI65596.1| ErfK/YbiS/YcfS/YnhG family protein ['Nostoc azollae' 0708] Length = 273 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 48/169 (28%), Gaps = 54/169 (31%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +V++ + +V + VG+ +TP +I +P W P + + Sbjct: 150 IVDLSDRRVYVYRYDEVIASYPIAVGKKGWETPTGEFQIIHKQHDPIWKHPITGQVFE-- 207 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 G + + I F+ Sbjct: 208 ---------------------------------------------AGTDSPLGDRWIGFW 222 Query: 317 S--RNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 S RN H TP L + GC+R+RN + L L TP Sbjct: 223 SDGRNEIGFHGTPNTDLIGA---AVSHGCLRMRNSDVRILYEQLSLGTP 268 >gi|33862677|ref|NP_894237.1| hypothetical protein PMT0404 [Prochlorococcus marinus str. MIT 9313] gi|33634593|emb|CAE20579.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 192 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 53/191 (27%), Gaps = 70/191 (36%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 R+++++ + L +E+G + +V VG +TP ++ +P W P+S Sbjct: 47 REGRHLVLDRRSRRLLVLEDGSLIKSFSVAVGMPGWETPTGEFQVLSKTPHPIWEHPQSG 106 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 R G N + S Sbjct: 107 K-----------------------------------------------RIGSGPKNPLGS 119 Query: 311 TKIEFYSRNNT------------------YMHDTPEPILFNNVVRFETSGCVRV--RNII 350 I FY N H TP R + GCVR+ +I Sbjct: 120 RWIGFYRDCNGRDAHDGDRWLTIDGCVTSGFHGTPHRWTVG---RAVSHGCVRLFEEDIQ 176 Query: 351 DLDVWLLKDTP 361 L + TP Sbjct: 177 SLYRLVKIGTP 187 >gi|121533822|ref|ZP_01665649.1| NLP/P60 protein [Thermosinus carboxydivorans Nor1] gi|121307813|gb|EAX48728.1| NLP/P60 protein [Thermosinus carboxydivorans Nor1] Length = 233 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 13/120 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V L+ +L+ G + F AV FQ GL+P G+V + T Sbjct: 33 LKPGMAGEEVAYLQAKLLELGYYTE--AVDGKFGIQTRLAVMRFQQATGLEPDGVVGALT 90 Query: 162 LEAMNVPVDLRI-----------RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 +A+ + +Q+ R G + + +E+ Sbjct: 91 WQAIREYHEQPELSRSGGNERKGQQIAAFATRYLGTPYAWSGQTPSGFDCSGFIVYVLEH 150 >gi|295706519|ref|YP_003599594.1| hypothetical protein BMD_4414 [Bacillus megaterium DSM 319] gi|294804178|gb|ADF41244.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 153 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 59/180 (32%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 Y+++N + L ++N ++ V G+ TP + NP Sbjct: 1 MPNDPYIIINKQSNELAYIQNKEIKQIIKVATGKTVNLTPEGEFTVTVKAVNP------- 53 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 Y + +NI N + Sbjct: 54 ---------------YYRRSNIE----------------------------GGAPQNPLG 70 Query: 310 STKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 I F +H T +P + ++GC+RV N + L + T W Sbjct: 71 VRWIGFDARETDGRIYGIHGTNQPDSIGK---YVSNGCIRVENREVSHLYDQVPLGTKVW 127 >gi|333026677|ref|ZP_08454741.1| hypothetical protein STTU_4183 [Streptomyces sp. Tu6071] gi|332746529|gb|EGJ76970.1| hypothetical protein STTU_4183 [Streptomyces sp. Tu6071] Length = 196 Score = 70.4 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 4/136 (2%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVD 170 L+ RL G F A+ FQ GL SG++D++T + P Sbjct: 3 ALQARLWSLGFFRQQPT--GYFGDVTAQALAAFQRDRGLAASGVLDAATWARLRAAGPAP 60 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + + + + + R + V+ + +L + +G+V V G T Sbjct: 61 TKAALYPETTLPPTRPDPRCLTGRALCVSKKSRTLAWMVDGRVVSVMDVRFGSAYTPTRD 120 Query: 231 LHSRINRIMFNPYWVI 246 ++ + I Sbjct: 121 GTFKVYWKSRDHVSTI 136 >gi|239929324|ref|ZP_04686277.1| lipoprotein [Streptomyces ghanaensis ATCC 14672] Length = 262 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 4/137 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+S V+ L+ RL + L +D E AVK FQ + GL +G D+ T + Sbjct: 59 PGDSGRDVRELQARLRQAAWLFHGPT--GTYDGPTEEAVKGFQGKRGLPRTGRTDTVTWQ 116 Query: 164 AMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + R + + R + ++ + +L + +G+ V Sbjct: 117 RLLGMTREPGRWELYLMGGQPADAPDARCRTGRVLCISKSSRTLRWMVDGRTVSTMPVRF 176 Query: 222 GRVDRQTPILHSRINRI 238 G T RI Sbjct: 177 GSEYTPTREGVFRIYWK 193 >gi|119511408|ref|ZP_01630520.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] gi|119463953|gb|EAW44878.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] Length = 267 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG + V++L+ RL G L + F E+AVK Q R+GL+ G+V +T Sbjct: 203 LRLGMRNSEVRKLQARLKQLGFLA--GDVDGDFGMNTEAAVKAAQQRYGLEADGVVGGAT 260 Query: 162 LEAMNV 167 EA++ Sbjct: 261 WEALSR 266 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 2/80 (2%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q I + L G+ V L+ L + G + + SAV LF Sbjct: 52 QRIAQATPTASISRPTLRFGSQGERVLELQAALKLLGFYS--GAVDGVYREETASAVSLF 109 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 + L+P G+VD+ T E + Sbjct: 110 KRAVALNPDGIVDAMTWERL 129 >gi|150395623|ref|YP_001326090.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150027138|gb|ABR59255.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 246 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 66/234 (28%), Gaps = 48/234 (20%) Query: 133 AFDAYVESAVKLFQMRHGL---DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + V +A + Q R GL +++ P I + Sbjct: 52 VYRQQVPTATRKQQGRRGLVRRPADAAAQQASIARRQKPAKSSIDP---QFLPQMVAYAT 108 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + ++++ L V R V VG+ + RI R P W P+ Sbjct: 109 REKPGTIVIDTNNRFLYLVTGKGEARRYGVGVGKPGFE-WAGEHRITRKAEWPDWTPPQE 167 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 +I ++ + R D G N + Sbjct: 168 MIARE-----------AAQGHY------------------------LPARMDGGPQNPLG 192 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + + +H T P +SGC+R+RN ++DL + T Sbjct: 193 ARAMYLG-STLYRIHGTNAPWTIGYG---VSSGCIRMRNEDVVDLYERVKVGTK 242 >gi|329295991|ref|ZP_08253327.1| ErfK/YbiS/YcfS/YnhG family protein [Plautia stali symbiont] Length = 362 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TP+ + + R P Sbjct: 91 LILPDAPREGIVINSAEMRLYYYPKGTKTVVVLPIGIGELGKDTPVNWTTAVERKKNGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + + A + P G Sbjct: 151 WT-PTKAMHAEYAARGKSIPAVF----------------------------------PAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL + P Sbjct: 176 PDNPMGLYALYIDRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KWLFDNVPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|240168399|ref|ZP_04747058.1| hydrolase [Mycobacterium kansasii ATCC 12478] Length = 406 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHG 150 L G+ S +V +R L G LD FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEIRAALAALGMLDNPDEDLITGRHIALEVFDAELDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 13/90 (14%) Query: 87 DILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFD 135 I+ + L LG V L+ RL G + + F Sbjct: 73 GIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFY--TGLVDGYFG 130 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ +Q +GL P G+ TL ++ Sbjct: 131 LQTHNALMSYQREYGLAPDGICGPETLRSL 160 >gi|17230237|ref|NP_486785.1| hypothetical protein alr2745 [Nostoc sp. PCC 7120] gi|17131838|dbj|BAB74444.1| alr2745 [Nostoc sp. PCC 7120] Length = 305 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 14/110 (12%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S P AQ I + + GWP L +G + V +L++RL G L Sbjct: 208 SSTPRFGPTPSAQRISGIQYTSE-----GWPI-----LRVGMKNSEVTKLQQRLSQLGFL 257 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--NVPVDLR 172 S + F E A+K Q R+G++P G+ +T EA+ R Sbjct: 258 KGS--VDGYFGVQTEEALKAAQRRYGIEPDGVAGGATWEALLRRSSPQRR 305 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AIA Q I + + L +G+ V L+ L + G + ++ + Sbjct: 46 AIATPQQIAQQ---VVINRPTLKIGSQGERVSELQAALRLLGFYS--GAIDGVYNENTAN 100 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 AV F+ GL P G+VD++T + + Sbjct: 101 AVSGFKQAAGLTPDGIVDAATWQRLFPS 128 >gi|190890520|ref|YP_001977062.1| hypothetical protein RHECIAT_CH0000899 [Rhizobium etli CIAT 652] gi|190695799|gb|ACE89884.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 249 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 41/204 (20%) Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ R + + T+ A+N + ++ + + + ++++ Sbjct: 68 FQRRI-IRQAPQPAPQTVSAINPGIPSIRHPIEPQFLPQMVDYDTQEKPGTIVIDTNNRF 126 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V +G R V VG+ + +I R P W P +I ++ Sbjct: 127 LYLVMDGGKARRYGVGVGKPGFE-WAGAHKITRKQEWPDWTPPSEMISRE---------- 175 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + R D G N + + + +H Sbjct: 176 -AAKGHY------------------------LPARMDGGPENPLGARAMYLG-STLYRIH 209 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T P + +SGC+R+RN Sbjct: 210 GTNAPWSIGS---AVSSGCIRLRN 230 >gi|260424725|ref|ZP_05778983.1| endopeptidase, cell wall lytic activity [Dialister invisus DSM 15470] gi|260402963|gb|EEW96510.1| endopeptidase, cell wall lytic activity [Dialister invisus DSM 15470] Length = 246 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LG+S +V+ L+ RL +G L + F+ SAVK FQ +H LD G+V Sbjct: 25 SYSLGDSGDAVKDLQRRLTQAGCLVRA---DGRFNETTVSAVKKFQKKHNLDVDGVVGPV 81 Query: 161 TLEAMN 166 T +A+ Sbjct: 82 TYKALT 87 >gi|218510941|ref|ZP_03508819.1| hypothetical protein RetlB5_28197 [Rhizobium etli Brasil 5] Length = 249 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 41/204 (20%) Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ R + + T+ A+N + ++ + + + ++++ Sbjct: 68 FQRRI-IRQAPQPAPQTVSAINPGIPSIRHPIEPQFLPQMVDYDTQEKPGTIVIDTNNRF 126 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V +G R V VG+ + +I R P W P +I ++ Sbjct: 127 LYLVMDGGKARRYGVGVGKPGFE-WAGAHKITRKQEWPDWTPPSEMISRE---------- 175 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + R D G N + + + +H Sbjct: 176 -AAKGHY------------------------LPARMDGGPENPLGARAMYLG-STLYRIH 209 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T P + +SGC+R+RN Sbjct: 210 GTNAPWSIGS---AVSSGCIRLRN 230 >gi|86159333|ref|YP_466118.1| ErfK/YbiS/YcfS/YnhG [Anaeromyxobacter dehalogenans 2CP-C] gi|85775844|gb|ABC82681.1| ErfK/YbiS/YcfS/YnhG [Anaeromyxobacter dehalogenans 2CP-C] Length = 284 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 59/203 (29%), Gaps = 52/203 (25%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVI 220 L+A P + ++ +L V+VN+ L + G L V Sbjct: 61 LDAFVPPPGE------LAILPTAWILPSAAEEGTVVVNLSEMRLYYLPAGPGPLLTFPVG 114 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 V TP+ + + + +P W +I ++D Sbjct: 115 VAVEAGATPLGVLTVEQKLVSPSWYPTPAIRRED-------------------------- 148 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P PG N + S + + +H T P R + Sbjct: 149 -------------PELPAAVPPGPDNPLGSHALRLSAP-TLLIHGTNRPYGVG---RRVS 191 Query: 341 SGCVRV--RNIIDLDVWLLKDTP 361 GC+R+ +I L + TP Sbjct: 192 HGCIRLYPEDIPRLHRAVRLGTP 214 >gi|302388464|ref|YP_003824286.1| Peptidoglycan-binding domain 1 protein [Clostridium saccharolyticum WM1] gi|302199092|gb|ADL06663.1| Peptidoglycan-binding domain 1 protein [Clostridium saccharolyticum WM1] Length = 510 Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V L+ERL+ G +D + F E+AVK +Q ++GL G+V T Sbjct: 86 LRNGVEHPVVASLQERLMDLGFMDNDEPTH-YFGNVTEAAVKTYQRQNGLVQDGIVGPET 144 Query: 162 LEAMNVPVDL 171 L ++ P Sbjct: 145 LNSIMSPSAK 154 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 29/154 (18%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRF------DNFLARVDMGIDSDIP---------I 69 + + + + V ++ +++ F ++ V I Sbjct: 80 NPIPEYLRNGVEHPVVASLQERLMDLGFMDNDEPTHYFGNVTEAAVKTYQRQNGLVQDGI 139 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 + ET+ A Y + G + R++ RL G L + Sbjct: 140 VGPETLNSIMSPSAKYYAVSK--------------GVEGEDISRIQSRLYELGYLASAGQ 185 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +S +F E+AVK Q +GL+ G V T+ Sbjct: 186 VSGSFGDETEAAVKKLQEVNGLNIDGKVGRQTIN 219 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 42/151 (27%), Gaps = 17/151 (11%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGIDSDIPIISK-- 72 L + + +++ S + + D + + Sbjct: 220 LLYSEEIKPNFLAYGEKSDVVLTSQQRLKELGYLITAPDGAYGDDTVTAVKQFQSRNDLV 279 Query: 73 -ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + I G L LG SV R+++ L G L S Sbjct: 280 VDGYLGPSTRITLMSAEAQPNG--------LTLGEQGDSVTRIQQLLNKYGYLASSNVT- 330 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + E AVK FQ +GL G V T+ Sbjct: 331 GYYGEVTEKAVKAFQSNNGLTADGSVGQLTM 361 >gi|312897678|ref|ZP_07757095.1| ErfK/YbiS/YcfS/YnhG [Megasphaera micronuciformis F0359] gi|310621311|gb|EFQ04854.1| ErfK/YbiS/YcfS/YnhG [Megasphaera micronuciformis F0359] Length = 355 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 44/161 (27%), Gaps = 53/161 (32%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +LVN + L + V VG+ TP + R+ Sbjct: 73 DRILVNTASRILTLYRGKEKAAMYPVGVGKASTPTPSGYYRVETK--------------- 117 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 EV E +D E R G N + I Sbjct: 118 --------------------------EVNPEWIDPEDTEN-----RIASGPGNPLGYRWI 146 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 F H T P + ++GCVR+ +++ DL Sbjct: 147 GFSGTYGI--HGTNSPESVG---GYVSNGCVRMREQDVEDL 182 >gi|304395769|ref|ZP_07377652.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] gi|304357063|gb|EFM21427.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] Length = 379 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TPI + + R P Sbjct: 90 LILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPISWTTAVERKKDGPT 149 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + D + G Sbjct: 150 WT-PTKGMHAD----------------------------------YAARGETLPAVFPAG 174 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL ++ P Sbjct: 175 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KWLYQNVPVG 227 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R + V+ + V++ + Sbjct: 228 TRVQFVDQPVKATVEPDGSRYVEVHNPL 255 >gi|75911127|ref|YP_325423.1| ErfK/YbiS/YcfS/YnhG protein [Anabaena variabilis ATCC 29413] gi|75704852|gb|ABA24528.1| ErfK/YbiS/YcfS/YnhG [Anabaena variabilis ATCC 29413] Length = 272 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 63/214 (29%), Gaps = 55/214 (25%) Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + ++ + + ++ ++R Q R + + + V+V++ Sbjct: 105 KKTQLLTPESRKNADLSDQSQLRLSQPAAHRKTS-NKLENAKKEVVVDLSDRRTYVYSGD 163 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 V + VG+ +TP ++ + +P W P + Sbjct: 164 VVIASYPIAVGKRGWETPTGTFNVSHMEHDPIWRHPITGK-------------------- 203 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS--RNNTYMHDTPEP 329 G + + I F+S RN H TP+ Sbjct: 204 ---------------------------VFPAGVDSPLGERWIGFWSDGRNKIGFHGTPDT 236 Query: 330 ILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 L + GC+R+RN + L + TP Sbjct: 237 HLLGT---AISHGCLRMRNSDVRLLYDQVEVGTP 267 >gi|302519494|ref|ZP_07271836.1| lipoprotein [Streptomyces sp. SPB78] gi|318081632|ref|ZP_07988946.1| hypothetical protein SSA3_34132 [Streptomyces sp. SA3_actF] gi|302428389|gb|EFL00205.1| lipoprotein [Streptomyces sp. SPB78] Length = 196 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 4/136 (2%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVD 170 L+ RL G F A+ FQ GL SG++D++T + P Sbjct: 3 ALQARLWSLGFFRQQPT--GFFGDVTAQALAAFQRDRGLGASGVLDAATWARLRAAGPAP 60 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + + + + + R + V+ + +L + +G+V V G T Sbjct: 61 TKAALYPETTLPPTRPDPRCLTGRALCVSKKSRTLAWMVDGRVVSVMDVRFGSAYTPTRD 120 Query: 231 LHSRINRIMFNPYWVI 246 ++ + I Sbjct: 121 GTFKVYWKSRDHVSTI 136 >gi|229180430|ref|ZP_04307773.1| hypothetical protein bcere0005_37750 [Bacillus cereus 172560W] gi|228603177|gb|EEK60655.1| hypothetical protein bcere0005_37750 [Bacillus cereus 172560W] Length = 186 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGNFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|75910509|ref|YP_324805.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704234|gb|ABA23910.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 305 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 12/101 (11%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S P + AQ I + + GWP L +G + V +L++RL G L Sbjct: 208 SSTPRFAPTPSAQRISGIQYTSE-----GWPI-----LRVGMKNSEVTKLQQRLSQLGFL 257 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G+ F E A+K Q R+G++P G+ +T EA+ Sbjct: 258 K--GGVDGYFGVQTEEALKAAQRRYGIEPDGVAGGATWEAL 296 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AIA Q I + + L +G+ V L+ L + G + ++ + Sbjct: 46 AIATPQQIAQQ---VVINRPTLKIGSQGERVSELQAALRLLGFYS--GAIDGVYNENTAN 100 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 AV F+ GL P G+VD+ T + + Sbjct: 101 AVSGFKQAAGLTPDGIVDAITWQRLFPS 128 >gi|330470820|ref|YP_004408563.1| cell wall hydrolase/autolysin [Verrucosispora maris AB-18-032] gi|328813791|gb|AEB47963.1| cell wall hydrolase/autolysin [Verrucosispora maris AB-18-032] Length = 388 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 RP+ G+ +V +R L L + FD E AV+ FQ GL G V Sbjct: 2 RPIRSGDRGPAVAEIRAVLTSLDLLSKATGPYDDEFDTATERAVRAFQQSRGLSVDGRVG 61 Query: 159 SSTLEAMNV 167 + T A++ Sbjct: 62 AETWRALDA 70 >gi|284053377|ref|ZP_06383587.1| peptidoglycan binding domain-containing protein [Arthrospira platensis str. Paraca] Length = 492 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V +++ RL G L + F ++AV FQ + L G+V + Sbjct: 52 VLAIGDFGPEVTQIQNRLRELGYLSANAT--GYFGEETQNAVIQFQRDNRLVQDGIVGPN 109 Query: 161 TLEAMNVPVD 170 T+ A+ Sbjct: 110 TVVALIATNQ 119 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 28/166 (16%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD----------MGIDSDIPI 69 + M S + + + + + + Sbjct: 292 VSMTQSNPSSILVLGSRGSDVIALQQRLQQLGYYTGMIDGVFGESTRVAVVRFQRDNAIT 351 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRP--------------LHLGNSSVSVQRLR 115 + + T+ +A + R P +P P + +GN+ V+R++ Sbjct: 352 QTGQVGPTTQFHLA--RATTQRPIIPVVPAGPGSVVRPVATNPNTYITIGNAGEDVRRIQ 409 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 RL G + ++ FD ++AV FQ + + +G+V +T Sbjct: 410 RRLRELGFY--NGPINGFFDGQTQNAVIQFQQAYNITTTGIVGPTT 453 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 85/285 (29%), Gaps = 52/285 (18%) Query: 91 RGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G L L G+ V ++ L G ++ +D AV+ FQM + Sbjct: 201 NRGTGSLAGNVSLGPGSFGPIVGLVQRELQRLGFFP--GQITNFYDEVTFQAVRNFQMVN 258 Query: 150 GLDPSGMVDSSTL-----EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 GL P+G + +T + M + V++ + +G R V Sbjct: 259 GLTPTGFIGPTTQSLLASQQMLGNSGITSNSTNVSMTQSNPSSILVLGSRGSDVIALQQR 318 Query: 205 L------EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 L + +G G + V V R R I + ++ + + R+ Q+ ++ Sbjct: 319 LQQLGYYTGMIDGVFGESTRVAVVRFQRDNAITQTG--QVGPTTQFHLARATTQRPIIP- 375 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP-----EPPNFIFRQD--------PGKI 305 + G V + N+ + Q G I Sbjct: 376 -------------VVPAGPGSVVRPVATNPNTYITIGNAGEDVRRIQRRLRELGFYNGPI 422 Query: 306 NAM--AST---KIEFYSRNNT---YMHD-TPEPILFNNVVRFETS 341 N T I+F N + T E LFN R Sbjct: 423 NGFFDGQTQNAVIQFQQAYNITTTGIVGPTTETYLFNVTRRSFGH 467 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+S V L+ RL G + + F +AV FQ + + +G+V T Sbjct: 139 LGLGDSGPGVTNLQNRLRNLGFFNNNST--GYFGPITRNAVIRFQQANSIAATGLVTEDT 196 Query: 162 LE 163 L Sbjct: 197 LA 198 >gi|145221431|ref|YP_001132109.1| peptidoglycan binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315446817|ref|YP_004079696.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium sp. Spyr1] gi|145213917|gb|ABP43321.1| Peptidoglycan-binding domain 1 protein [Mycobacterium gilvum PYR-GCK] gi|315265120|gb|ADU01862.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium sp. Spyr1] Length = 395 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 64/215 (29%), Gaps = 26/215 (12%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHGL 151 L G+ +V +R L G + FD ++ AV+ FQ GL Sbjct: 2 SSLRRGDRGGAVAEIRAALAALGMATDPDEDLSTGKHVAADLFDDELDHAVRAFQQHRGL 61 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-- 209 G+V +T A+ R+ +N + + + V+ Sbjct: 62 LVDGIVGEATYRALKE-ASYRLGARTLNHQFGAPMYGDDVATLQARLQDLGFYTGLVDGH 120 Query: 210 -----NGKVGLRSTVIVGRVDRQ-TPILHSRINRIMFNPYWVIPRSIIQKDMM------- 256 + + D P + + P +I +++++ Sbjct: 121 FGLQTHNALSSYQREYGLYPDGICGPETLRSLYFLGARVTGGSPHAIREEELVRSSGPRL 180 Query: 257 --ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + DP ++ +++ + ++ W+ Sbjct: 181 SGKRIIVDPGRGGSDHGVIVNGPDGPISEADILWD 215 >gi|17229182|ref|NP_485730.1| cell wall-binding protein [Nostoc sp. PCC 7120] gi|17135510|dbj|BAB78056.1| cell wall-binding protein [Nostoc sp. PCC 7120] Length = 424 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV+ L+++L +G ++ +D E AV+ FQ GL G+V +S Sbjct: 65 ALERGDQGPSVRNLQQKLQQAGFY--QAPVTQVYDFSTEEAVRRFQAAAGLPVDGVVGAS 122 Query: 161 TL----EAMNVPVDLRIRQLQVNLMRIK 184 TL + + PV +++Q + Sbjct: 123 TLEKLDQWRSSPVANQVQQYSTPSTPTR 150 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ L++RL ++G + F E AVK FQ + LD G+V +T Sbjct: 216 LVKGDEGEAVRSLQQRLRVAGFYYGNAT--GVFGPITEEAVKRFQTAYRLDVDGIVGPAT 273 Query: 162 LEAMN 166 + + Sbjct: 274 IRRLP 278 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G+ +V+ L+E+LI +G L + F Y AVK FQ + L SG+ Sbjct: 296 KDKLTVGDRGEAVRVLQEQLIQAGYL--QGQPNGYFGPYTAEAVKRFQAANYLAASGIAG 353 Query: 159 SSTLEAMNVP 168 +T ++ Sbjct: 354 PTTRAKLHSS 363 >gi|291451685|ref|ZP_06591075.1| lipoprotein [Streptomyces albus J1074] gi|291354634|gb|EFE81536.1| lipoprotein [Streptomyces albus J1074] Length = 280 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 4/150 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G +S V+ L+ RL G S + AV +Q + L +G Sbjct: 72 PAVLMRPGQTSEQVRELQARLASLGLFGRSPT--GFYGDVTSEAVSAYQRKGALPVTGTT 129 Query: 158 DSSTLEAMNV-PVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGL 215 D+ T + + L +++ + R + ++ + SL + +GKV Sbjct: 130 DAVTWDRLRAGTPRPTQDDLHPPTTLPLSKPDKRCLTGRVLCISKQSRSLAWMVDGKVRA 189 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 V G T ++ + + Sbjct: 190 AMDVRFGSQYTPTRDGAFKVYWKSRDHHST 219 >gi|239979825|ref|ZP_04702349.1| hypothetical protein SalbJ_10322 [Streptomyces albus J1074] Length = 288 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 4/150 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G +S V+ L+ RL G S + AV +Q + L +G Sbjct: 80 PAVLMRPGQTSEQVRELQARLASLGLFGRSPT--GFYGDVTSEAVSAYQRKGALPVTGTT 137 Query: 158 DSSTLEAMNV-PVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGL 215 D+ T + + L +++ + R + ++ + SL + +GKV Sbjct: 138 DAVTWDRLRAGTPRPTQDDLHPPTTLPLSKPDKRCLTGRVLCISKQSRSLAWMVDGKVRA 197 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 V G T ++ + + Sbjct: 198 AMDVRFGSQYTPTRDGAFKVYWKSRDHHST 227 >gi|228954436|ref|ZP_04116461.1| hypothetical protein bthur0006_38060 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805093|gb|EEM51687.1| hypothetical protein bthur0006_38060 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 186 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|315651948|ref|ZP_07904950.1| endopeptidase [Eubacterium saburreum DSM 3986] gi|315485777|gb|EFU76157.1| endopeptidase [Eubacterium saburreum DSM 3986] Length = 533 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 14/220 (6%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 + L + H + + E I N ++ I ++E + ++ Sbjct: 161 TLPLLMDANAKHYAAKLGDVGEDVKRIQNRLYELGYLASADMITGTYDERTQEAALKLQQ 220 Query: 81 AIAFYQDILSRGG-------WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 I + G E+ L LG S VQ ++ RL G L S Sbjct: 221 -INQLSEDGKVGSETMNLLYSDEIKANTLSLGEHSEVVQAIQNRLFQLGYLTSSP--DGT 277 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV---NLMRIKKLLEQK 190 + E AV+ FQ ++ L G + ST A+ + + + L + N + Sbjct: 278 YGNDTELAVRTFQSKNDLVVDGYLGPST-RAVILSKEAKANGLVLGDQNEQVSRLQALLA 336 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 N E E+ +S + R Sbjct: 337 KAGYLNEANATGYFGEITESALKRFQSNNGLEADGRAGAQ 376 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 9/135 (6%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 V I ++ F D + + + + I+ Sbjct: 106 GVQHSYIARVQSRLMELGF----MDNDEPTNYFGEVTKAAVMIFQRQNGLAQDGIIGPST 161 Query: 94 WPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 P L LG+ V+R++ RL G L + ++ +D + A Q Sbjct: 162 LPLLMDANAKHYAAKLGDVGEDVKRIQNRLYELGYLASADMITGTYDERTQEAALKLQQI 221 Query: 149 HGLDPSGMVDSSTLE 163 + L G V S T+ Sbjct: 222 NQLSEDGKVGSETMN 236 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 19/158 (12%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGI----DSDIPII 70 L + + E++ + + + D S ++ Sbjct: 237 LLYSDEIKANTLSLGEHSEVVQAIQNRLFQLGYLTSSPDGTYGNDTELAVRTFQSKNDLV 296 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + + +A+ ++ + G L LG+ + V RL+ L +G L Sbjct: 297 VDGYLGPSTRAVILSKEAKANG---------LVLGDQNEQVSRLQALLAKAGYL-NEANA 346 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + F ESA+K FQ +GL+ G + T +N Sbjct: 347 TGYFGEITESALKRFQSNNGLEADGRAGAQTFAKLNTD 384 >gi|167584280|ref|ZP_02376668.1| putative phage-encoded peptidoglycan binding protein [Burkholderia ubonensis Bu] Length = 268 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 17/151 (11%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ V L+ RLI +G + ++ +D ESAVK Q GL G+ TL Sbjct: 5 RLGDQGDDVGLLQRRLIRAGY---ALDVTHVYDEATESAVKAVQTEAGLVVDGIAGPKTL 61 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A+ L + + + +P A + AV + Sbjct: 62 AAIATGRRDPKH-----------LADADIVKAADTLGVPVACVRAVN---EVESTGSGFL 107 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R + + + P I K Sbjct: 108 SDGRPKILFERHVFWKRLEARGINPAPIAAK 138 >gi|30022230|ref|NP_833861.1| protein erfK/srfK precursor [Bacillus cereus ATCC 14579] gi|218230902|ref|YP_002368953.1| hypothetical protein BCB4264_A4260 [Bacillus cereus B4264] gi|228922900|ref|ZP_04086197.1| hypothetical protein bthur0011_38840 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960418|ref|ZP_04122070.1| hypothetical protein bthur0005_38850 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229071657|ref|ZP_04204874.1| hypothetical protein bcere0025_38250 [Bacillus cereus F65185] gi|229111624|ref|ZP_04241175.1| hypothetical protein bcere0018_38690 [Bacillus cereus Rock1-15] gi|229129430|ref|ZP_04258401.1| hypothetical protein bcere0015_38730 [Bacillus cereus BDRD-Cer4] gi|229146724|ref|ZP_04275090.1| hypothetical protein bcere0012_38650 [Bacillus cereus BDRD-ST24] gi|296504640|ref|YP_003666340.1| protein ErfK/SrfK precursor [Bacillus thuringiensis BMB171] gi|29897787|gb|AAP11062.1| Protein erfK/srfK precursor [Bacillus cereus ATCC 14579] gi|218158859|gb|ACK58851.1| conserved hypothetical protein [Bacillus cereus B4264] gi|228636744|gb|EEK93208.1| hypothetical protein bcere0012_38650 [Bacillus cereus BDRD-ST24] gi|228654035|gb|EEL09902.1| hypothetical protein bcere0015_38730 [Bacillus cereus BDRD-Cer4] gi|228672006|gb|EEL27299.1| hypothetical protein bcere0018_38690 [Bacillus cereus Rock1-15] gi|228711452|gb|EEL63410.1| hypothetical protein bcere0025_38250 [Bacillus cereus F65185] gi|228799279|gb|EEM46244.1| hypothetical protein bthur0005_38850 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228836756|gb|EEM82100.1| hypothetical protein bthur0011_38840 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325692|gb|ADH08620.1| protein erfK/srfK precursor [Bacillus thuringiensis BMB171] Length = 186 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|226536686|gb|ACO72580.1| hypothetical cell wall lytic activity protein [Geobacillus stearothermophilus] Length = 450 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 57/193 (29%), Gaps = 15/193 (7%) Query: 27 VEKPIHASVLDEIINESYHSIVND------RFDNFLARVDMGIDSDIPIIS--KETIAQT 78 + +++ + + + V + T Sbjct: 95 SNDTLAIGSRGAAVSDLQRRLKQLGYFRYPQITGYYGAVTADAVKQFQRANGLPATGRAD 154 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + + + P L +G+ V++L+++L G S ++ + Sbjct: 155 RATLERLKQKATSQ--PATLSDALTIGSRGDDVRKLQQQLKQLGYFTYS-DITGYYGVLT 211 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK---LLEQKMGLRY 195 A++ FQ +GL +G VD+ T+ + V + + R + L +G Sbjct: 212 ADAIRRFQRDNGLPVTGAVDNQTVARLASAVKAKTTSPA-PIERERLAVRLSIGALGDDV 270 Query: 196 VLVNIPAASLEAV 208 + L Sbjct: 271 KRIQTKLKELGYF 283 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G V+R++ +L G ++ + AV+ FQ L +G+VD Sbjct: 258 AVRLSIGALGDDVKRIQTKLKELGYF--WTDITGYYGTATADAVRRFQQAAQLPATGIVD 315 Query: 159 SSTLEA-MNVPVDLRIRQLQV 178 T E + ++ +++ Sbjct: 316 GETYERLIGQAPAAKLDVIEL 336 >gi|148242242|ref|YP_001227399.1| hypothetical protein SynRCC307_1143 [Synechococcus sp. RCC307] gi|147850552|emb|CAK28046.1| Uncharacterized conserved secreted protein [Synechococcus sp. RCC307] Length = 194 Score = 69.7 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 70/212 (33%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 D +R L++ L + + + G R+++++ L +E G++ R V VG +TP Sbjct: 28 DHPLRPLELQLAELPSNVVGRAG-RHLVLHRSRRQLLLIEQGQLVSRYPVAVGMAGWETP 86 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 R+ + P W P++ ++ + Sbjct: 87 AGTFRVLNKVSEPSWAHPQTG---------------------EVVTGED----------- 114 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRN------------------NTYMHDTPEPIL 331 N + S I FY H TP Sbjct: 115 --------------PKNPLGSRWIGFYKDCVGRKGFDGEQMLDIKGCTTVGFHGTPHRWT 160 Query: 332 FNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + GCVR+ +I DL + TP Sbjct: 161 IGH---AVSHGCVRLFDEDIRDLFDRVRTGTP 189 >gi|154497714|ref|ZP_02036092.1| hypothetical protein BACCAP_01690 [Bacteroides capillosus ATCC 29799] gi|150273212|gb|EDN00357.1| hypothetical protein BACCAP_01690 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G++ +V+ ++ +L G + + E AVK FQ ++GL G+ Sbjct: 30 AAVYRQGSTGDAVRTIQTKLSNWGYFS--GAIDGIYGPKTEEAVKYFQRKNGLTADGVAG 87 Query: 159 SSTLEAMNVP 168 +TL A+ + Sbjct: 88 PATLRALGMS 97 >gi|120406998|ref|YP_956827.1| peptidoglycan binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959816|gb|ABM16821.1| Peptidoglycan-binding domain 1 protein [Mycobacterium vanbaalenii PYR-1] Length = 395 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 9/119 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHGL 151 L G+ +V +R L G +D + FD ++ AV+ FQ GL Sbjct: 2 SSLRRGDRGGAVAEIRAALSALGMIDSPDEDLTTGKHVAADMFDDDLDHAVRAFQQHRGL 61 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 G+V +T A+ R+ +N + + + V+ Sbjct: 62 LVDGIVGEATYRALKE-ASYRLGARTLNHQFGAPMYGDDVATLQSRLQDLGFYTGLVDG 119 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 14/99 (14%) Query: 69 IISKETIAQTEKAIAFY--QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 I+ + T ++A + + + G P V L+ RL G Sbjct: 66 IVGEATYRALKEASYRLGARTLNHQFGAP----------MYGDDVATLQSRLQDLGFY-- 113 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + F +A+ +Q +GL P G+ TL ++ Sbjct: 114 TGLVDGHFGLQTHNALSSYQREYGLYPDGICGPETLRSL 152 >gi|328954133|ref|YP_004371467.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] gi|328454457|gb|AEB10286.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] Length = 300 Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 52/182 (28%) Query: 184 KKLLEQKMGLRYVLVNIPAA--SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + +L +++N+ L + G+V + +G D +TP RI+ N Sbjct: 97 RWVLPPAPAGEGIVINVAELRDYLFFPKTGQV-RTYPIGIGVFDYKTPFGRFRISSKAEN 155 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W IP + K MA + Sbjct: 156 PGWRIPAGLQAKYGMAYM-----------------------------------------P 174 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKD 359 PG+ N + + + MH T P F R + GC+R +I +L + Sbjct: 175 PGEENPVGTHWLGLTH---YGMHGTHAP--FGVG-RLVSHGCIRHYNEDIKELFELVPVG 228 Query: 360 TP 361 TP Sbjct: 229 TP 230 >gi|284043195|ref|YP_003393535.1| glycoside hydrolase family 24 [Conexibacter woesei DSM 14684] gi|283947416|gb|ADB50160.1| glycoside hydrolase family 24 [Conexibacter woesei DSM 14684] Length = 391 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S + + + +A + +L R L RPL G + V+ +R L ++G +D + Sbjct: 112 SATALQRVARRLARPRTVLER-----LRARPLRRGAKTPDVKTVRTYLELAGLVDRDRTR 166 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 + + AV+ FQ R GL G+V T A+ R+ Sbjct: 167 RDEYGEPLALAVRAFQRRVGLTEDGLVGPKTFAALRRRYGWRV 209 >gi|222106794|ref|YP_002547585.1| hypothetical protein Avi_5811 [Agrobacterium vitis S4] gi|221737973|gb|ACM38869.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 223 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 44/195 (22%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + V + R++ R L+ V+++ L VE +R V VG Sbjct: 30 ASSVVTPQMMKREVPDKFKRRLVRLKTDEAPGTVIIDTNNKFLYLVEGNNRAIRYGVGVG 89 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R I R + P W P + ++ + +I Sbjct: 90 REG-FGWSGVVNIGRKVEWPSWRPPEEMRVRE-----------ARRGHI----------- 126 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFE 339 Q+ G N + + + +R+ + +H T +P Sbjct: 127 -------------LPVVQEGGPDNPLGARAMYLYKGNRDTIFRIHGTNQPWSIG---LNL 170 Query: 340 TSGCVRVRN--IIDL 352 +SGC+R+ N + DL Sbjct: 171 SSGCIRMNNKDVEDL 185 >gi|171316535|ref|ZP_02905752.1| Peptidoglycan-binding domain 1 protein [Burkholderia ambifaria MEX-5] gi|171098369|gb|EDT43174.1| Peptidoglycan-binding domain 1 protein [Burkholderia ambifaria MEX-5] Length = 266 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V L+ +LI +G + + +AV FQ HGL G+ Sbjct: 3 KTLRLGDRGADVSYLQRQLIAAG---ARLDTDAIYGSATRNAVVAFQATHGLVADGIAGP 59 Query: 160 STLEAMNVPVDLRIRQLQVNLMR 182 T ++ +L R Sbjct: 60 KTWSTLSAGRRDPRHLTDADLQR 82 >gi|254423629|ref|ZP_05037347.1| ErfK/YbiS/YcfS/YnhG superfamily [Synechococcus sp. PCC 7335] gi|196191118|gb|EDX86082.1| ErfK/YbiS/YcfS/YnhG superfamily [Synechococcus sp. PCC 7335] Length = 108 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 36/135 (26%), Gaps = 52/135 (38%) Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 V +GR +TP + + +P W P I +++ Sbjct: 4 SYPVAIGRAGWETPTGKFEVFHQVTDPGWTNP---ITSEVVP------------------ 42 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTYMHDTPEPILFN 333 PG N + I F+ N+ H TP Sbjct: 43 --------------------------PGPYNPLGDRWIAFWTDGTNSIGFHGTPNRESVG 76 Query: 334 NVVRFETSGCVRVRN 348 + GCVR+ N Sbjct: 77 T---AASHGCVRMYN 88 >gi|271499268|ref|YP_003332293.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] gi|270342823|gb|ACZ75588.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] Length = 362 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 81/280 (28%), Gaps = 67/280 (23%) Query: 124 LDPSKGLSVAFDAYVE--------SAVKLF--QMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 S ++ A++ F Q + GL L N +D+ + Sbjct: 27 YPLPAPNSRLVGENIQVTIPSGSTDALEHFAAQYQMGLSN--------LLEANPGIDVYL 78 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-L 231 + + ++L+ +++N L G K + + +G++ + TPI Sbjct: 79 PKPGTTMTVPQQLILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGQLGKDTPINW 138 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 + + R P W ++ + Y Sbjct: 139 VTSVQRKKERPTWTPTAAMHAE-----------YAARGEY-------------------- 167 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 G N M + H T F +R + GCVR+R+ Sbjct: 168 ----LPQVYPAGPDNPMGLYALYIGKLYAI--HGTNAN--FGIGLR-VSHGCVRLRDKD- 217 Query: 352 LDVWLLKDTPTWSR-----YHIEEVVKTRKTTPVKLATEV 386 +L + P +R ++ V+ + V++ + Sbjct: 218 -IKYLFEHVPVGTRVQFINEPVKATVEPDGSRYVEVHNPL 256 >gi|296167152|ref|ZP_06849559.1| N-acetylmuramoyl-l-alanine amidase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897474|gb|EFG77073.1| N-acetylmuramoyl-l-alanine amidase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 405 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHG 150 L G+ S +V +R L G LD + FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEVRATLAALGLLDIPEDDLATGRHVSPEVFDAELDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 18/155 (11%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + + E ++ + P + + Q +A ++ Sbjct: 8 YGDALRCGDRSAAVTEVRATLAALGLLDIPEDDLATGRHVSPEVFDAELDQAVRAFQQHR 67 Query: 87 DILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGL 130 +L G + L LG V L+ RL G + + Sbjct: 68 GLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFY--TGLV 125 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 126 DGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|255659253|ref|ZP_05404662.1| endopeptidase, cell wall lytic activity [Mitsuokella multacida DSM 20544] gi|260848708|gb|EEX68715.1| endopeptidase, cell wall lytic activity [Mitsuokella multacida DSM 20544] Length = 217 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 4/90 (4%) Query: 94 WPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W + +G+ V ++ +L G A+ AVK FQM G++ Sbjct: 14 WFSVAGASAFRVGDQGSDVAEIQGQLANLGY---DVTADGAYGPATVEAVKSFQMTQGIN 70 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 G+V ST A+ + ++ R Sbjct: 71 ADGLVGPSTYAALLGKSMPAVSSTTNSIAR 100 >gi|219670721|ref|YP_002461156.1| peptidoglycan-binding protein [Desulfitobacterium hafniense DCB-2] gi|219540981|gb|ACL22720.1| Peptidoglycan-binding domain 1 protein [Desulfitobacterium hafniense DCB-2] Length = 433 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V ++ RL G + + F E+AV FQ GL+P G+V T Sbjct: 4 LRRGSRGNDVAEVQVRLSELGYIP--GPIDGIFGPKTEAAVIRFQKDRGLNPDGIVGPLT 61 Query: 162 LEAMNVP 168 +A+ P Sbjct: 62 YQALFQP 68 >gi|119488463|ref|ZP_01621636.1| hypothetical protein L8106_23835 [Lyngbya sp. PCC 8106] gi|119455274|gb|EAW36414.1| hypothetical protein L8106_23835 [Lyngbya sp. PCC 8106] Length = 238 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G + L G V L++RL I G + F + E AV+ FQ GL Sbjct: 73 GSSQPIRRYTLEPGTRGTQVTGLQQRLQIHGF--DPGRVDSVFGSRTEQAVRAFQQARGL 130 Query: 152 DPSGMVDSSTLEAMNVPVDLRIR 174 + +G+VD T + + Sbjct: 131 EVNGIVDRGTWKLLETTPRPVAT 153 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 32/162 (19%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI-AFYQDI 88 + + + FD +DS +++ + ++A I Sbjct: 82 TLEPGTRGTQVTGLQQRLQIHGFD------PGRVDSVFGSRTEQAVRAFQQARGLEVNGI 135 Query: 89 LSRGGWP-----------------------ELPIRPLHLGNSSVSVQRLRERLIISGDLD 125 + RG W + L G V+ L+ RL I G Sbjct: 136 VDRGTWKLLETTPRPVATAPRPVETAPRPVAVAQEVLTKGTKGSKVRTLQTRLEIKGF-- 193 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + F + ++AV +Q GL+ +G+VD T A++ Sbjct: 194 DPGPVDGVFGSRTQAAVIAYQQTKGLEVNGVVDEQTWVALSQ 235 >gi|16079450|ref|NP_390274.1| hypothetical protein BSU23940 [Bacillus subtilis subsp. subtilis str. 168] gi|221310314|ref|ZP_03592161.1| hypothetical protein Bsubs1_13136 [Bacillus subtilis subsp. subtilis str. 168] gi|221314638|ref|ZP_03596443.1| hypothetical protein BsubsN3_13057 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319561|ref|ZP_03600855.1| hypothetical protein BsubsJ_12978 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323837|ref|ZP_03605131.1| hypothetical protein BsubsS_13107 [Bacillus subtilis subsp. subtilis str. SMY] gi|321311875|ref|YP_004204162.1| hypothetical protein BSn5_02505 [Bacillus subtilis BSn5] gi|1731066|sp|P54539|YQJB_BACSU RecName: Full=Putative L,D-transpeptidase YqjB; Flags: Precursor gi|1303953|dbj|BAA12608.1| YqjB [Bacillus subtilis] gi|2634828|emb|CAB14325.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|320018149|gb|ADV93135.1| hypothetical protein BSn5_02505 [Bacillus subtilis BSn5] Length = 176 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 62/210 (29%), Gaps = 64/210 (30%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G YV+VN L + + KV +V G+ D TP + NP Sbjct: 21 NPLPGDPYVIVNKRTNELAVILDNKVEGVYSVATGKTDDLTPEGEFSVTVKAENP----- 75 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 Y + NI N Sbjct: 76 -----------------YYRKKNIE----------------------------GGSPDNP 90 Query: 308 MASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 + + I F ++ +H T F ++GC+R+ N D V L + P Sbjct: 91 LGARWIGFDAKGTDGRIYGIHGTNREESVGK---FVSNGCIRMHN--DEVVHLFQTIPVG 145 Query: 364 SRYHIEEVVKTRKTTPV---KL--ATEVPV 388 +R I + ++ + + L ++P+ Sbjct: 146 TRVLITDDNRSFEEIAIEHKALIKKQDIPI 175 >gi|284044768|ref|YP_003395108.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283948989|gb|ADB51733.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 349 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 54/229 (23%) Query: 135 DAYVESAV-----KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 DA + AV Q L+ + + + P R ++ ++ + ++ Sbjct: 154 DASLALAVDSVSVNDSQDGSRLENPDKLRKQIVRTLRKPRGERTFAAKIVAVKPETTTDE 213 Query: 190 KMGLRYVLV--NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +V + ++ G++ +V VG + TP + + +P W +P Sbjct: 214 VWAANQTVVTVSKSGTTVRVFVRGELSKTYSVAVGSAEYPTPGGQFTVQTMQVDPPWNVP 273 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KIN 306 S D+ G+ + G N Sbjct: 274 NSEWAGDLA---------------------GQTI-------------------PGGAPNN 293 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + + I F H T + + + GCVR+ N D+ Sbjct: 294 PLVARWIGFNG--AVGFHGTADGGSIGS---AASHGCVRM-NPADVIDL 336 >gi|89897594|ref|YP_521081.1| hypothetical protein DSY4848 [Desulfitobacterium hafniense Y51] gi|89337042|dbj|BAE86637.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 433 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V ++ RL G + + F E+AV FQ GL+P G+V T Sbjct: 4 LRRGSRGNDVAEVQVRLSELGYIP--GPIDGIFGPKTEAAVIRFQKDRGLNPDGIVGPLT 61 Query: 162 LEAMNVP 168 +A+ P Sbjct: 62 YQALFQP 68 >gi|319408707|emb|CBI82362.1| putative Peptidoglycan-binding domain 1 protein [Bartonella schoenbuchensis R1] Length = 395 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 15/149 (10%) Query: 39 IINESYHSIVNDRFDN--FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 + S+ + F+ + + A T+K+ + + G Sbjct: 164 KVRGLASSLRDKDFNAIARAYNGSGMVKEYGRRMRNAYCALTKKSAEVSNSVRANG---- 219 Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L LG V+ L++RL G + + SA+ FQ H L+ G+ Sbjct: 220 -----LRLGCKGYRVEALQKRLNDLGY---PVAIDSDYGPNTRSAIFAFQADHNLEVDGV 271 Query: 157 VDSSTLEAMNV-PVDLRIRQLQVNLMRIK 184 V + T A++V + R+ V++ ++ Sbjct: 272 VGAKTQAALDVATPMISPRRSGVSMADLR 300 >gi|29829926|ref|NP_824560.1| lipoprotein [Streptomyces avermitilis MA-4680] gi|29607036|dbj|BAC71095.1| putative lipoprotein [Streptomyces avermitilis MA-4680] Length = 285 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 5/144 (3%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P + L G+ +V+ L+ RL L G + +D +AV+ FQ + GL +G Sbjct: 75 PAKVLWSAGDKGTAVRELQARLRQVAWL--FDGPTGTYDDLTVTAVRGFQGKRGLPRTGE 132 Query: 157 VDSSTLEAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 D+ T + + + + + M R + ++ + +L + +GK Sbjct: 133 TDAVTWQRLVRMTHEPTKWELYALGGQPAAAPDPRCMTGRALCISKTSRTLRWMIDGKTV 192 Query: 215 LRSTVIVGRVDRQTPILHSRINRI 238 V G T + Sbjct: 193 STMAVRFGAQYTPTREGVFSVYWK 216 >gi|229061832|ref|ZP_04199163.1| hypothetical protein bcere0026_39090 [Bacillus cereus AH603] gi|228717441|gb|EEL69108.1| hypothetical protein bcere0026_39090 [Bacillus cereus AH603] Length = 186 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVLK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKHD--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + KT + Sbjct: 141 DRIPIGTKVSIVKSKKTFQ 159 >gi|28210330|ref|NP_781274.1| gamma-D-glutamyl-L-diamino acid endopeptidase I [Clostridium tetani E88] gi|28202767|gb|AAO35211.1| gamma-D-glutamyl-L-diamino acid endopeptidase I [Clostridium tetani E88] Length = 423 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V+ ++ L G + + + E+AV+ FQ GL G+V +T Sbjct: 4 LKLGSRGPRVREVQSILKQMGYY--RGTVDGIYGSQTEAAVRNFQKNMGLIADGIVGENT 61 Query: 162 LEAMNV 167 A+ Sbjct: 62 YRALGR 67 >gi|163941899|ref|YP_001646783.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus weihenstephanensis KBAB4] gi|229013361|ref|ZP_04170501.1| hypothetical protein bmyco0001_37750 [Bacillus mycoides DSM 2048] gi|229134965|ref|ZP_04263771.1| hypothetical protein bcere0014_38720 [Bacillus cereus BDRD-ST196] gi|229168894|ref|ZP_04296611.1| hypothetical protein bcere0007_38470 [Bacillus cereus AH621] gi|163864096|gb|ABY45155.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus weihenstephanensis KBAB4] gi|228614486|gb|EEK71594.1| hypothetical protein bcere0007_38470 [Bacillus cereus AH621] gi|228648467|gb|EEL04496.1| hypothetical protein bcere0014_38720 [Bacillus cereus BDRD-ST196] gi|228747954|gb|EEL97819.1| hypothetical protein bmyco0001_37750 [Bacillus mycoides DSM 2048] Length = 186 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDIVLK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKHD--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + KT + Sbjct: 141 DRIPIGTKVSIVKSKKTFQ 159 >gi|308186133|ref|YP_003930264.1| Protein erfK/srfK precursor [Pantoea vagans C9-1] gi|308056643|gb|ADO08815.1| Protein erfK/srfK precursor [Pantoea vagans C9-1] Length = 370 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G K + + +G + + TPI + + R P Sbjct: 90 LILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTAVERKKDGPT 149 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + D + G Sbjct: 150 WT-PTKGMHAD----------------------------------YAARGETLPAVFPAG 174 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ WL ++ P Sbjct: 175 PDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KWLYQNVPVG 227 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R + V+ + V++ + Sbjct: 228 TRVQFVDQPVKATVEPDGSRYVEVHNPL 255 >gi|229081409|ref|ZP_04213911.1| hypothetical protein bcere0023_40430 [Bacillus cereus Rock4-2] gi|228701899|gb|EEL54383.1| hypothetical protein bcere0023_40430 [Bacillus cereus Rock4-2] Length = 186 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKIFPVATGKTNELTPEGNFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + K+ + Sbjct: 141 DRIPIGTKVWIVKSKKSFQ 159 >gi|225568373|ref|ZP_03777398.1| hypothetical protein CLOHYLEM_04450 [Clostridium hylemonae DSM 15053] gi|225162821|gb|EEG75440.1| hypothetical protein CLOHYLEM_04450 [Clostridium hylemonae DSM 15053] Length = 267 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S + L+E+LI G S G + AVK +Q HGL G+V +T Sbjct: 201 LSPGASGGITKLLQEKLISLGYSCGSSGADGILGQDTQRAVKAYQKDHGLAADGIVGPAT 260 Query: 162 LEAM 165 + + Sbjct: 261 WKKL 264 >gi|157692082|ref|YP_001486544.1| peptidoglycan binding protein [Bacillus pumilus SAFR-032] gi|157680840|gb|ABV61984.1| peptidoglycan binding protein [Bacillus pumilus SAFR-032] Length = 165 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 48/153 (31%), Gaps = 11/153 (7%) Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW-VIPRSIIQKDMMALLRQDPQYLKDNN 270 + R+T + + + + P +I + +++ + Sbjct: 16 ALDFRTTTDALKAANPSLQGQEPVQNEVIIIPGLPDPNTIPYRISVSISSKRLVLFS--G 73 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 +I + + +P +I + P + + + +H T P Sbjct: 74 SELIRSY--PIATGRILNMTPTGSYYIVNRQPNPGGPFGAYWLSLSKVH-YGIHGTNNPS 130 Query: 331 LFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + GC+R+ +N+I+L + TP Sbjct: 131 SIGK---AVSRGCIRMYNQNVIELASIVPNGTP 160 >gi|89099286|ref|ZP_01172164.1| hypothetical protein B14911_08385 [Bacillus sp. NRRL B-14911] gi|89086132|gb|EAR65255.1| hypothetical protein B14911_08385 [Bacillus sp. NRRL B-14911] Length = 180 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 46/185 (24%), Gaps = 59/185 (31%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 G +V++N L V+ +V + G+ TP + P Sbjct: 18 WPIGPNPLPGDPFVIINKQTNELALVDENRVQTVISAATGKTADLTPEGLFTVTVKAKEP 77 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 Y + NI Sbjct: 78 ----------------------YYRRKNIP----------------------------GG 87 Query: 303 GKINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 N + + I F +H T EP + +SGCVR++N I L + Sbjct: 88 SPENPLGTRWIGFDAEETDGRIYGIHGTNEPGSIGK---YVSSGCVRMQNEAIESLFELI 144 Query: 357 LKDTP 361 T Sbjct: 145 PIGTK 149 >gi|304393160|ref|ZP_07375088.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] gi|303294167|gb|EFL88539.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] Length = 272 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 44/196 (22%) Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +G+ +S + I + R+ +K G ++V+ L V Sbjct: 101 TGVTTASLRTTQPMTSHAGIDPALL-PTRVSWSGTEKPGT--IIVDTVQRRLFLVGRDGS 157 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 R V VG+ + ++ R M P W P K+M+A +++ Sbjct: 158 ARRYAVGVGKPGFE-WAGSHKVTRKMEWPSWTPP-----KEMIARVKR------------ 199 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILF 332 + + G N M + + S + Y +H T + Sbjct: 200 -----------------ESGRDLPAFMEGGPNNPMGARALYLGS--SIYRIHGTNQAWSI 240 Query: 333 NNVVRFETSGCVRVRN 348 +SGC+R+RN Sbjct: 241 GK---AVSSGCIRMRN 253 >gi|161521380|ref|YP_001584807.1| peptidoglycan binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189352453|ref|YP_001948080.1| putative bacteriophage-encoded peptidoglycan-binding protein [Burkholderia multivorans ATCC 17616] gi|327198031|ref|YP_004306400.1| gp33 [Burkholderia phage KS5] gi|160345430|gb|ABX18515.1| Peptidoglycan-binding domain 1 protein [Burkholderia multivorans ATCC 17616] gi|189336475|dbj|BAG45544.1| putative bacteriophage-encoded peptidoglycan-binding protein [Burkholderia multivorans ATCC 17616] gi|310657165|gb|ADP02280.1| gp33 [Burkholderia phage KS5] Length = 266 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 3/114 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LHLG+ V L+ +L+ +G + + AV FQ HGL G+ Sbjct: 3 KTLHLGDRGADVAYLQRQLVAAG---ARIDADAIYGSATRGAVVAFQASHGLVADGIAGP 59 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 T A+ +L L+ + + + + + +G+ Sbjct: 60 KTWAALAAGRRDPRHLTDADLQCAADRLQADLAAVRAVNEVESRGAGFLPDGRP 113 >gi|302558839|ref|ZP_07311181.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302476457|gb|EFL39550.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 278 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 5/151 (3%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G+S ++ L+ RL + +D AV+ FQ + GL +G+ Sbjct: 68 PARVLWSPGDSGRDIRELQARLRQVAWIFQGPT--GTYDEPTAEAVRGFQGKRGLPRTGV 125 Query: 157 VDSSTLEAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 DS T + R + + R + ++ + +L + +G+ Sbjct: 126 TDSVTWRRLLDMTHEPGRWELYLMGGQPADAPDPRCGTGRVLCISKSSRTLRWMIDGRTV 185 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 V G T R+ + Sbjct: 186 STMAVRFGSEYTPTREGVFRVYWKSRDHVST 216 >gi|258512366|ref|YP_003185800.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479092|gb|ACV59411.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 112 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 15/119 (12%) Query: 254 DMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 +++ L YL + + GK V + + P + Sbjct: 5 EIIVDLSDRRLYLLEAGKVIRAFPVGIGKMVTRTPIGQYTIVNKE------PNPGGPFGA 58 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + +H T +P + GC+R+ N + WL P + I Sbjct: 59 YWMGLSKPH-YGIHGTNDPSSIGK---LVSHGCIRMYNKDVI--WLAHTVPLGTPVTIR 111 >gi|218462030|ref|ZP_03502121.1| hypothetical protein RetlK5_22248 [Rhizobium etli Kim 5] Length = 167 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 48/174 (27%), Gaps = 30/174 (17%) Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFV 283 + + +P + + + Q Y +D + + G + Sbjct: 1 NPGSQFAAGDTVWVVSPGPPREGRVKRIEADKKTGQVLAYGEDGYLLAVYPATIGSKDNP 60 Query: 284 EEVDWNSPEP----------PNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMH 324 + + P F+Q G + + I+ +H Sbjct: 61 SPSGKHKVKGVARMPVYRYDPKRNFKQGNNNKVLTIPKGPNGPVGTVWIDLTEP-TYGIH 119 Query: 325 DTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 TPEP L + V + GCVR+ N +L + P + K Sbjct: 120 GTPEPKLIDKVG---SHGCVRLTNWDAEELAGMV---KPGVLVDFVNRSPAAPK 167 >gi|326777088|ref|ZP_08236353.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces cf. griseus XylebKG-1] gi|326657421|gb|EGE42267.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces cf. griseus XylebKG-1] Length = 343 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V+ L+ RL G + + + AV+ FQ + L +G D+ T Sbjct: 138 MRTGSESDRVRELQARLRQIGHFGRNPT--GYYGSVTADAVRSFQAKRRLPVTGSTDAVT 195 Query: 162 LEA-MNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + + + +L R +++ + R + ++ + +L + +GKV V Sbjct: 196 WQRLLAMTRVPTAEELDPPTERPLAAPDERCLKGRVLCISKESRTLAWMRDGKVLSAMDV 255 Query: 220 IVGRVDRQTPILHSRI 235 G T + Sbjct: 256 RFGSEYTPTREGVFEV 271 >gi|222056278|ref|YP_002538640.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. FRC-32] gi|221565567|gb|ACM21539.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. FRC-32] Length = 320 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 +G+S V +++ L +G F ++AV+ FQ GL G+V + Sbjct: 3 SYRIGSSGDDVMLIQKALQDAGFYQSQP--DGVFGPNTDAAVRNFQAASGLGGDGIVGPA 60 Query: 161 TLEAMNVPVDLRIRQLQVNLM 181 T + L +L Sbjct: 61 TWAKLFPSQSPAPAPLSGSLD 81 >gi|182436464|ref|YP_001824183.1| hypothetical protein SGR_2671 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464980|dbj|BAG19500.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 206 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V+ L+ RL G + + + AV+ FQ + L +G D+ T Sbjct: 1 MRTGSESDRVRELQARLRQIGHFGRNPT--GYYGSVTADAVRSFQAKRRLPVTGSTDAVT 58 Query: 162 LEA-MNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + + + +L R +++ + R + ++ + +L + +GKV V Sbjct: 59 WQRLLAMTRVPTAEELDPPTERPLAAPDERCLKGRVLCISKESRTLAWMRDGKVLSAMDV 118 Query: 220 IVGRVDRQTPILHSRI 235 G T + Sbjct: 119 RFGSEYTPTREGVFEV 134 >gi|261420639|ref|YP_003254321.1| NLP/P60 protein [Geobacillus sp. Y412MC61] gi|319768309|ref|YP_004133810.1| NLP/P60 protein [Geobacillus sp. Y412MC52] gi|261377096|gb|ACX79839.1| NLP/P60 protein [Geobacillus sp. Y412MC61] gi|317113175|gb|ADU95667.1| NLP/P60 protein [Geobacillus sp. Y412MC52] Length = 450 Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ +V L+ RL G ++ + A AVK FQ +GL +G Sbjct: 95 SNDTLAIGSRGAAVSDLQRRLKQLGYF-RYPQITGYYGAVTADAVKQFQQANGLPATGRA 153 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLM 181 D +TLE + ++ +L L Sbjct: 154 DRATLERLKQKATIKTAELSDTLT 177 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 57/197 (28%), Gaps = 23/197 (11%) Query: 27 VEKPIHASVLDEIINESYHSIVND------RFDNFLARVDMGIDSDI------PIISKET 74 + +++ + + + V P + Sbjct: 95 SNDTLAIGSRGAAVSDLQRRLKQLGYFRYPQITGYYGAVTADAVKQFQQANGLPATGRAD 154 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A E+ + L +G+ V++L+++L G S ++ + Sbjct: 155 RATLERLKQKATIKTAE------LSDTLTIGSRGDDVRKLQQQLKQLGYFTYS-DITGYY 207 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK---KLLEQKM 191 AV+ FQ +GL +G VD+ T + V + + R + +L + Sbjct: 208 GVLTADAVRRFQRDNGLPVTGAVDNQTAARLASAVKAKTTSPA-PIERERQAVRLSIGAL 266 Query: 192 GLRYVLVNIPAASLEAV 208 G + L Sbjct: 267 GDDVKRIQTKLKELGYF 283 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SS + ++++RL G + F A E AVK FQ L +G+VD +T Sbjct: 29 KKGMSSPEITQIQQRLKEQGFFT-YPKATGYFGAITEEAVKAFQRAMNLPATGIVDDATY 87 Query: 163 EAMNVPVD 170 + P Sbjct: 88 AKLKKPAS 95 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G V+R++ +L G ++ + A AV+ FQ L +G+VD Sbjct: 258 AVRLSIGALGDDVKRIQTKLKELGYF--WTAITGYYGAATADAVRRFQQAAQLPATGIVD 315 Query: 159 SSTLEA-MNVPVDLRIRQLQV 178 T E + ++ +++ Sbjct: 316 GETYERLIGQAPAAKLDVIEL 336 >gi|77748527|ref|NP_640821.2| lytic enzyme [Xanthomonas axonopodis pv. citri str. 306] Length = 584 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 64 DSDIPIISKETI---AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 D++ + S E +A A + S G + G+SS V +L++ L Sbjct: 356 DANGKLTSPENFWNQGHQHQAGARHTQAASASGTGAV-----RHGDSSQDVGKLQQDLNR 410 Query: 121 SGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQL 176 G D F AV FQ +HGL G+V T A++ PV R Q+ Sbjct: 411 LGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQV 470 Query: 177 Q 177 Sbjct: 471 A 471 >gi|317126727|ref|YP_004100839.1| cell wall hydrolase/autolysin [Intrasporangium calvum DSM 43043] gi|315590815|gb|ADU50112.1| cell wall hydrolase/autolysin [Intrasporangium calvum DSM 43043] Length = 418 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPS------KGLSVAFDAYVESAVKLFQMRHGLDPS 154 L G+S +V + RL+++GDL S + FD VE AVK FQ R GL Sbjct: 8 VLRRGDSGPAVADVCARLLLTGDLPASWAERGVPRGTAVFDETVEEAVKSFQQRRGLLVD 67 Query: 155 GMVDSSTLEAMN 166 G+V ST ++ Sbjct: 68 GVVGRSTYSVLD 79 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V RL+ RL+ G + ++A++ FQ GL P G + TL A Sbjct: 100 GDDVVRLQARLLELGFTP--GKVDGIHGPATDAALRSFQAAVGLTPDGTLGPETLRAFQA 157 >gi|21106554|gb|AAM35357.1| lytic enzyme [Xanthomonas axonopodis pv. citri str. 306] Length = 589 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 64 DSDIPIISKETI---AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 D++ + S E +A A + S G + G+SS V +L++ L Sbjct: 361 DANGKLTSPENFWNQGHQHQAGARHTQAASASGTGAV-----RHGDSSQDVGKLQQDLNR 415 Query: 121 SGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQL 176 G D F AV FQ +HGL G+V T A++ PV R Q+ Sbjct: 416 LGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQV 475 Query: 177 Q 177 Sbjct: 476 A 476 >gi|86356460|ref|YP_468352.1| hypothetical protein RHE_CH00814 [Rhizobium etli CFN 42] gi|86280562|gb|ABC89625.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 249 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 41/204 (20%) Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ R + + T+ A+N + ++ + + ++++ Sbjct: 68 FQRRV-IRHAPQPAPQTVSAINPGIPAIRHPIEPQYLPQMVDYDTMEKPGTIVIDTNNRF 126 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V G R V VG+ + +I R P W P +I ++ Sbjct: 127 LYLVMEGGKARRYGVGVGKPGFE-WAGAHKITRKQEWPDWTPPSEMISRE---------- 175 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + R D G N + + + +H Sbjct: 176 -AAKGHY------------------------LPARMDGGPENPLGARAMYLG-STLYRIH 209 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T P + +SGC+R+RN Sbjct: 210 GTNAPWSIGS---AVSSGCIRLRN 230 >gi|323491182|ref|ZP_08096368.1| general secretion pathway protein A [Vibrio brasiliensis LMG 20546] gi|323314550|gb|EGA67628.1| general secretion pathway protein A [Vibrio brasiliensis LMG 20546] Length = 540 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 21/168 (12%) Query: 25 SLVEKPIHASVLDEIINESY----HSIVNDR--FDNFLARVDMGIDSDIPIISKETIAQT 78 L + L ++ + ++ + F A + + + E I Sbjct: 379 GLFRCAVEQGNLSQLAESNTPVVLSLDIDGQPRFAVLYALSATKVQLLV---NDELIEFE 435 Query: 79 EKAIAF-----YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + + Y+ I G W L G V L + L L ++ S Sbjct: 436 RQWLEEIWHGEYRHIWK-GYW----DETLKPGMQGQQVALLDKHLSQL--LGQAESDSPM 488 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 FD +++ V+LFQ GL G+ TL + L N Sbjct: 489 FDQQLKNKVELFQRWQGLSVDGIAGQKTLRLLETLSQPGAPTLTANEE 536 >gi|169825867|ref|YP_001696025.1| spore protein ykuD-like protein [Lysinibacillus sphaericus C3-41] gi|168990355|gb|ACA37895.1| Spore protein ykuD-like protein [Lysinibacillus sphaericus C3-41] Length = 164 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLK 358 DP + + + +H T +P + + GC+R++N +L + Sbjct: 101 DPNPGGPFGTMWMSLSKEH-YGIHGTNDPSSIGH---AVSHGCIRMQNPDVEELASIVPI 156 Query: 359 DTP 361 T Sbjct: 157 GTE 159 >gi|291484832|dbj|BAI85907.1| hypothetical protein BSNT_03562 [Bacillus subtilis subsp. natto BEST195] Length = 176 Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 64/210 (30%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G YV+VN L + + +V +V G+ D TP + NP Sbjct: 21 NPLPGDPYVIVNKRTNELAVILDNRVEGVYSVATGKTDDLTPEGEFSVTVKAENP----- 75 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 Y + NI N Sbjct: 76 -----------------YYRKKNIE----------------------------GGSPDNP 90 Query: 308 MASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 + + I F ++ +H T F ++GC+R+ N D V L + P Sbjct: 91 LGARWIGFDAKGTDGRIYGIHGTNREESVGK---FVSNGCIRMHN--DEVVHLFQTIPVG 145 Query: 364 SRYHIEEVVKTRKTTPV---KL--ATEVPV 388 +R I + ++ + + L ++P+ Sbjct: 146 TRVLITDDNRSFEEIAIEHKALIKKQDIPI 175 >gi|229152352|ref|ZP_04280544.1| hypothetical protein bcere0011_38900 [Bacillus cereus m1550] gi|228630960|gb|EEK87597.1| hypothetical protein bcere0011_38900 [Bacillus cereus m1550] Length = 186 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 63/191 (32%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 17 WPLGDNPRAGDPFIIVNKATNKLAYIDDGKIQKVFPVATGKTNELTPEGTFDVVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ + Sbjct: 73 -----------------AKDPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHI 368 P ++ I Sbjct: 141 DRIPIGTKVWI 151 >gi|186681476|ref|YP_001864672.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186463928|gb|ACC79729.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 379 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV+ L+++L +G ++ +D + AV+ FQ GL G+V +S Sbjct: 65 ALEKGDQGPSVRNLQQKLKTAGFY--QASVTQVYDVSTQEAVRRFQKAVGLPVDGIVGAS 122 Query: 161 TLEAMN 166 TL+ + Sbjct: 123 TLQKLE 128 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L +G+ SV+ ++E+LI +G L+ + + Y AV+ FQ + L SG+ Sbjct: 251 VNRDKLRVGDRGESVRIIQEQLIQAGYLEGEP--NGYYGPYTADAVRRFQAANFLAASGV 308 Query: 157 VDSSTLEAMNVPV 169 +T + V Sbjct: 309 AGPTTRAKLYSSV 321 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+ERL I+G + F E +VK FQ + L G+ +T Sbjct: 174 LAKGDEGEDVRALQERLRIAGFYYGNAT--GIFGPITEESVKRFQDSYKLSVDGIAGPAT 231 Query: 162 LEAMN 166 L + Sbjct: 232 LRKLP 236 >gi|297585348|ref|YP_003701128.1| NLP/P60 protein [Bacillus selenitireducens MLS10] gi|297143805|gb|ADI00563.1| NLP/P60 protein [Bacillus selenitireducens MLS10] Length = 507 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G S SV+ L+ RL G F +SAV FQ GL G+ Sbjct: 228 STDTLREGMSGDSVRALQTRLKDLGHYHHRVT--GIFGPLTKSAVISFQRNEGLTADGIA 285 Query: 158 DSSTLEAMNVPVDLRI 173 + TL+AM Sbjct: 286 GARTLKAMQQASAAPA 301 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 1/72 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G V L+ L G + F E AV+ FQ + G+V Sbjct: 35 QTLRQGMDHPDVVELQTMLKDKGYFT-YHTATGYFGTITEEAVRKFQREANIQVDGVVGP 93 Query: 160 STLEAMNVPVDL 171 T + Sbjct: 94 ETYRQLLSTSAP 105 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 6/144 (4%) Query: 27 VEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + + + + + + + + + + + I + T IA Sbjct: 228 STDTLREGMSGDSVRALQTRLKDLGHYHHRVTGIFGPLTKSAVISFQRNEGLTADGIAGA 287 Query: 86 QDILSRGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + + + P L G++ +V+ L+ERL +G + F + AV Sbjct: 288 RTLKAMQQASAAPAPTGFLLKEGDTGSNVRELQERLKATGHYKHNVT--GTFGPITKEAV 345 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMN 166 + FQ + L G+V +S E + Sbjct: 346 RSFQSQWSLVNDGIVTASVWEKVE 369 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 1/70 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V+ L+ L G L+ + F V+ FQ GL G+ Sbjct: 136 SSRLLREGVRGQDVEALQLALKQKGFLNIE-RATGYFGTVTAKGVRDFQQARGLKVDGIA 194 Query: 158 DSSTLEAMNV 167 T+ +N Sbjct: 195 GPQTIGRLNA 204 >gi|296333452|ref|ZP_06875905.1| hypothetical protein BSU6633_20252 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675042|ref|YP_003866714.1| hypothetical protein BSUW23_11835 [Bacillus subtilis subsp. spizizenii str. W23] gi|296149650|gb|EFG90546.1| hypothetical protein BSU6633_20252 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413286|gb|ADM38405.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 176 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 56/197 (28%), Gaps = 59/197 (29%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G YV+VN L + + KV +V G+ D TP + NP Sbjct: 21 NPLPGDPYVIVNKRTNELAVILDNKVEGVYSVATGKTDDLTPEGEFSVTVKAVNP----- 75 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 Y + +I N Sbjct: 76 -----------------YYRKKSIE----------------------------GGSPDNP 90 Query: 308 MASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 + + I F ++ +H T F ++GC+R+ N V L + P Sbjct: 91 LGARWIGFDAKGTDGRIYGIHGTNREDSIGK---FVSNGCIRMHNNE--VVHLFQTIPVG 145 Query: 364 SRYHIEEVVKTRKTTPV 380 +R I + ++ + + Sbjct: 146 TRVLITDDTRSFEEIAI 162 >gi|148264215|ref|YP_001230921.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter uraniireducens Rf4] gi|146397715|gb|ABQ26348.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter uraniireducens Rf4] Length = 439 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 47/182 (25%) Query: 181 MRIKKLLEQKMGL---RYVLVNIPAASLEAVENGK---VGLRSTVIVGRVDRQTPILHSR 234 RI L + + ++VN+ L + V V VG +R TP Sbjct: 108 ERIMLPLSFILPDAPRKGIVVNLATMRLFQFKGDSKSLVVSTYPVGVGTKERPTPTGQMH 167 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + R P W +P SI + + + Sbjct: 168 VERKATRPTWHVPASISED-----------------------------------HRKKGD 192 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 PG N + + ++ +H T +P T+GC+R+ N+ L Sbjct: 193 PLPAEVPPGPQNPLGECALYLS-KSGYLIHGTNKPASIG---LKATNGCLRLYPENVKML 248 Query: 353 DV 354 Sbjct: 249 YD 250 >gi|116250643|ref|YP_766481.1| ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255291|emb|CAK06366.1| putative ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 248 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 41/204 (20%) Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ R + + V T+ A+N + R ++ + + ++++ Sbjct: 67 FQRRI-IRRAPQVSPQTVSAINPGIPSIRRPIEPQYLPQMVDYDTTEKPGTIVIDTNNRF 125 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V G R V VG+ + +I R P W P +I ++ Sbjct: 126 LYLVMQGGKARRYGVGVGKPGFE-WAGAHKITRKTEWPDWTPPSEMISRE---------- 174 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + R D G N + + + +H Sbjct: 175 -AAKGHY------------------------LPARMDGGAENPLGARAMYLG-STLYRIH 208 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T P + +SGC+R+RN Sbjct: 209 GTNAPWSIGS---AVSSGCIRLRN 229 >gi|116074564|ref|ZP_01471825.1| hypothetical protein RS9916_28559 [Synechococcus sp. RS9916] gi|116067786|gb|EAU73539.1| hypothetical protein RS9916_28559 [Synechococcus sp. RS9916] Length = 206 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 72/216 (33%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 +P L+ +L R+ L Q++G++ ++++ L + +G + R VG Sbjct: 38 PIPPVAEPISLEASLARVPMDLRQRLGVQ-LVLDRTHRQLLVLRDGVIRRRYPAAVGTEG 96 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 +TP R+ + + P W P G+ + Sbjct: 97 WETPAGRHRVLQKVREPVWTHPV----------------------------DGRHIS--- 125 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFY------SRNNT------------YMHDTP 327 G+ N + + I FY + + H TP Sbjct: 126 -----------------GEKNPLGTRWIGFYRDCKGRNGWDGEQYLDIAGCTVAGFHGTP 168 Query: 328 EPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 R + GCVR+ N+ ++ + TP Sbjct: 169 HRWTVG---RAVSHGCVRLYEENVQEVFDLVRVGTP 201 >gi|108802363|ref|YP_642560.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. MCS] gi|119871516|ref|YP_941468.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. KMS] gi|126438343|ref|YP_001074034.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. JLS] gi|108772782|gb|ABG11504.1| Peptidoglycan-binding domain 1 [Mycobacterium sp. MCS] gi|119697605|gb|ABL94678.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. KMS] gi|126238143|gb|ABO01544.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. JLS] Length = 398 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 8/75 (10%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHGL 151 L G+ +V +R L G LD + FD +++ AV+ FQ GL Sbjct: 2 SSLRHGDRGAAVTEIRAALSALGLLDSPDDDLTTGRHVVADLFDDHLDQAVRAFQQHRGL 61 Query: 152 DPSGMVDSSTLEAMN 166 G+V +T A+ Sbjct: 62 LVDGIVGEATYRALK 76 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 14/99 (14%) Query: 69 IISKETIAQTEKAIAFY--QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 I+ + T ++A + ++ + G P V L+ RL G Sbjct: 66 IVGEATYRALKEASYRLGARTLMHQFGAP----------MYGDDVATLQARLQDLGFY-- 113 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + F + +Q +GL P G+ TL ++ Sbjct: 114 TGLVDGHFGLQTHHGLTSYQREYGLYPDGICGPETLRSL 152 >gi|288554208|ref|YP_003426143.1| endopeptidase, cell wall lytic activity [Bacillus pseudofirmus OF4] gi|288545368|gb|ADC49251.1| endopeptidase, cell wall lytic activity [Bacillus pseudofirmus OF4] Length = 393 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L +G + V L+E L G + + + AV+ FQ +GL G Sbjct: 25 ALGDQTLRVGMNHTDVTELQEALKSKGYFTFD-RATGYYGSITADAVRKFQASNGLKVDG 83 Query: 156 MVDSSTLEAMNVP 168 + T A+ Sbjct: 84 IAGPQTFAALKAN 96 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 7/99 (7%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +T A + + S L G +V L+++L G + Sbjct: 86 GPQTFAALKANGSTVTAASSNT-----SSATLRTGARGAAVTNLQQQLRNHGHFSS--AV 138 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 F E AV+ FQ GL G+ T A+ Sbjct: 139 DGVFGPLTERAVRSFQSARGLSVDGIAGPQTFSALGQAA 177 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V RL++RL G + + + +V+ FQ + L G+ T Sbjct: 191 LRQGTRSAEVTRLQDRLRQLGYFNSNST--GYYGTVTTESVRRFQAVNKLQVDGVAGPQT 248 Query: 162 LEAMNVP 168 L ++ Sbjct: 249 LSRLHGS 255 >gi|157145092|ref|YP_001452411.1| hypothetical protein CKO_00823 [Citrobacter koseri ATCC BAA-895] gi|157082297|gb|ABV11975.1| hypothetical protein CKO_00823 [Citrobacter koseri ATCC BAA-895] Length = 310 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + G + +G R+TP + + R P W P + ++ Sbjct: 99 IVVNVAEMRLYYYPKGGDTVDVLPIGIGEAGRETPRNWVTAVERKQEAPSWT-PTANTRR 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + P + G N M I Sbjct: 158 EYAKRGESLPAF----------------------------------VPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI----- 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGKLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQIIDQPL 236 Query: 369 EEVVKTRKTTPVKLATEV 386 + V+ + +++ + Sbjct: 237 KTTVEADGSRWIEVHEPL 254 >gi|56421723|ref|YP_149041.1| cell wall lytic activity [Geobacillus kaustophilus HTA426] gi|56381565|dbj|BAD77473.1| cell wall lytic activity [Geobacillus kaustophilus HTA426] Length = 451 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 20/178 (11%) Query: 27 VEKPIHASVLDEIINESYHSIVND------RFDNFLARVDMGIDSDI------PIISKET 74 + +++ + + + V P + Sbjct: 96 SNDTLAIGSRGAAVSDLQRRLKQLGYFRYPQITGYYGAVTADAVKQFQRANGLPATGRAD 155 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A E+ G P P L +G V++L+++L G S ++ + Sbjct: 156 RATLERLKQK-----EEGSSPS-PSAALTVGARGDEVRKLQQQLKQLGYFTYS-DITGYY 208 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 A++ FQ +GL +G VD+ T A + R + + +G Sbjct: 209 GVLTADAIRRFQRDNGLPVTGAVDNQT-AARLASAVKAKTPPPAPIERERLAVRLSIG 265 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 59/262 (22%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFL-------ARVDMGIDS-----DIPIIS---K 72 + I + + F + A + + + ++P Sbjct: 25 AAEWKKGMSSPEIKQLQQRLKEKGFFTYPQATGYFGAITEEAVKAFQRAMNLPATGIVDD 84 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 T A+ + A A L +G+ +V L+ RL G ++ Sbjct: 85 ATYAKLKSAPA--------------SNDTLAIGSRGAAVSDLQRRLKQLGYF-RYPQITG 129 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD----------------LRIRQL 176 + A AVK FQ +GL +G D +TLE + + +R+L Sbjct: 130 YYGAVTADAVKQFQRANGLPATGRADRATLERLKQKEEGSSPSPSAALTVGARGDEVRKL 189 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI-LHSRI 235 Q L ++ + Y ++ A +NG + G VD QT L S + Sbjct: 190 QQQLKQLGYFTYSDITGYYGVLTADAIRRFQRDNGLP------VTGAVDNQTAARLASAV 243 Query: 236 NRIMFNPYWVIPRSIIQKDMMA 257 P + I+++ +A Sbjct: 244 KAK------TPPPAPIERERLA 259 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 22/143 (15%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDI 88 + A + ++ + + AR+ + + P + + Sbjct: 209 GVLTADAIRRFQRDNGLPVTGAVDNQTAARLASAVKAKTPPPAPIERERL---------- 258 Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 L +G V+R++ +L G ++ + AV+ FQ Sbjct: 259 ----------AVRLSIGALGEDVKRIQTKLKELGYF--YTAITGYYGTATADAVRRFQQA 306 Query: 149 HGLDPSGMVDSSTLEAMNVPVDL 171 L +G+VDS T E + Sbjct: 307 AKLPATGIVDSETYERLLGQAPP 329 >gi|295704524|ref|YP_003597599.1| autolytic lysozyme [Bacillus megaterium DSM 319] gi|294802183|gb|ADF39249.1| autolytic lysozyme [Bacillus megaterium DSM 319] Length = 433 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 26/167 (15%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+S ++V+ L++ LI G +G + + +AVK Q ++GL +G Sbjct: 220 PSAQLQQGDSGLAVKELQQNLIKLGFELSQQGTDGQYGSETVAAVKALQEKYGLTSTGKA 279 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 D TL M + ++ +L ++ L G +Y + ++A ++ Sbjct: 280 DEKTLAKMMELLKGVSNPIEESLPKVTSL-----GDKY------SFQVKAKKD------- 321 Query: 218 TVIVGRVDRQTPILHSRINRIMF------NPYWVIPRSIIQ-KDMMA 257 + V + T + +F N W +P +Q KD+ Sbjct: 322 -IGVYKYANVTEDFRTIKKGTVFSVYGYTNAAWAVPGGFVQMKDVEP 367 >gi|228992894|ref|ZP_04152819.1| hypothetical protein bpmyx0001_36320 [Bacillus pseudomycoides DSM 12442] gi|228766943|gb|EEM15581.1| hypothetical protein bpmyx0001_36320 [Bacillus pseudomycoides DSM 12442] Length = 186 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKQTNKLAYIDDGKIQKVFPVATGKTNELTPEGSFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 ++P Y+ + Sbjct: 73 -----------------AKNPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F +R+ +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARDTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + +T + Sbjct: 141 DRIPIGTKVWIVKSKRTFQ 159 >gi|157368843|ref|YP_001476832.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia proteamaculans 568] gi|157320607|gb|ABV39704.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia proteamaculans 568] Length = 306 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 51/185 (27%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G + + +G++ + TP+ + + R P Sbjct: 91 LILPDAPREGIIINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPLNWTTTVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W + + + + G Sbjct: 151 WTPTAKMRAE-----------------------------------YAADGEILPAVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ +L + P Sbjct: 176 PDNPMGLYALYVGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KFLFDNVPVG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|218755707|ref|ZP_03534503.1| hydrolase [Mycobacterium tuberculosis GM 1503] gi|254548919|ref|ZP_05139366.1| hydrolase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289764106|ref|ZP_06523484.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289711612|gb|EFD75628.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length = 406 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHG 150 L G+ S +V +R L G LD + FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEIRAALTALGMLDHQEEDLTTGRNVALELFDAQLDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQ ++A+ +Q I+ + L LG V L+ Sbjct: 54 AQLDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQA 113 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL G + + F +A+ +Q +GL G+ TL ++ Sbjct: 114 RLQDLGFY--TGLVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|15843548|ref|NP_338585.1| N-acetymuramyl-L-alanine amidase-related protein [Mycobacterium tuberculosis CDC1551] gi|31795088|ref|NP_857581.1| putative hydrolase [Mycobacterium bovis AF2122/97] gi|57117169|ref|YP_178027.1| hydrolase [Mycobacterium tuberculosis H37Rv] gi|121635901|ref|YP_976124.1| putative hydrolase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121639826|ref|YP_980050.1| putative hydrolase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663782|ref|YP_001285305.1| N-acetymuramyl-L-alanine amidase-related protein [Mycobacterium tuberculosis H37Ra] gi|148825123|ref|YP_001289877.1| hydrolase [Mycobacterium tuberculosis F11] gi|167969452|ref|ZP_02551729.1| hypothetical hydrolase [Mycobacterium tuberculosis H37Ra] gi|215405973|ref|ZP_03418154.1| hydrolase [Mycobacterium tuberculosis 02_1987] gi|215413843|ref|ZP_03422508.1| hydrolase [Mycobacterium tuberculosis 94_M4241A] gi|215425177|ref|ZP_03423096.1| hydrolase [Mycobacterium tuberculosis T92] gi|215432896|ref|ZP_03430815.1| hydrolase [Mycobacterium tuberculosis EAS054] gi|215448262|ref|ZP_03435014.1| hydrolase [Mycobacterium tuberculosis T85] gi|219555762|ref|ZP_03534838.1| hydrolase [Mycobacterium tuberculosis T17] gi|224992321|ref|YP_002647011.1| putative hydrolase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800965|ref|YP_003033967.1| hydrolase [Mycobacterium tuberculosis KZN 1435] gi|254366451|ref|ZP_04982495.1| hypothetical hydrolase [Mycobacterium tuberculosis str. Haarlem] gi|260184845|ref|ZP_05762319.1| hydrolase [Mycobacterium tuberculosis CPHL_A] gi|260198975|ref|ZP_05766466.1| hydrolase [Mycobacterium tuberculosis T46] gi|260203128|ref|ZP_05770619.1| hydrolase [Mycobacterium tuberculosis K85] gi|289441358|ref|ZP_06431102.1| hydrolase [Mycobacterium tuberculosis T46] gi|289445516|ref|ZP_06435260.1| hydrolase [Mycobacterium tuberculosis CPHL_A] gi|289556183|ref|ZP_06445393.1| hydrolase [Mycobacterium tuberculosis KZN 605] gi|289567871|ref|ZP_06448098.1| hydrolase [Mycobacterium tuberculosis T17] gi|289572567|ref|ZP_06452794.1| hydrolase [Mycobacterium tuberculosis K85] gi|289747759|ref|ZP_06507137.1| hydrolase [Mycobacterium tuberculosis 02_1987] gi|289748453|ref|ZP_06507831.1| hydrolase [Mycobacterium tuberculosis T92] gi|289756050|ref|ZP_06515428.1| hydrolase [Mycobacterium tuberculosis EAS054] gi|289760088|ref|ZP_06519466.1| hydrolase [Mycobacterium tuberculosis T85] gi|297636602|ref|ZP_06954382.1| hydrolase [Mycobacterium tuberculosis KZN 4207] gi|297733597|ref|ZP_06962715.1| hydrolase [Mycobacterium tuberculosis KZN R506] gi|298527387|ref|ZP_07014796.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306778809|ref|ZP_07417146.1| hydrolase [Mycobacterium tuberculosis SUMu002] gi|306791520|ref|ZP_07429822.1| hydrolase [Mycobacterium tuberculosis SUMu005] gi|306795585|ref|ZP_07433887.1| hydrolase [Mycobacterium tuberculosis SUMu006] gi|307086717|ref|ZP_07495830.1| hydrolase [Mycobacterium tuberculosis SUMu012] gi|313660928|ref|ZP_07817808.1| hydrolase [Mycobacterium tuberculosis KZN V2475] gi|7478145|pir||C70851 probable hydrolase - Mycobacterium tuberculosis (strain H37RV) gi|13883926|gb|AAK48399.1| N-acetymuramyl-L-alanine amidase-related protein [Mycobacterium tuberculosis CDC1551] gi|31620686|emb|CAD96132.1| PUTATIVE HYDROLASE [Mycobacterium bovis AF2122/97] gi|38490393|emb|CAE55652.1| PROBABLE HYDROLASE [Mycobacterium tuberculosis H37Rv] gi|121491548|emb|CAL70005.1| Putative hydrolase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121495474|emb|CAL73963.1| Putative hydrolase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151963|gb|EBA44008.1| hypothetical hydrolase [Mycobacterium tuberculosis str. Haarlem] gi|148507934|gb|ABQ75743.1| N-acetymuramyl-L-alanine amidase-related protein [Mycobacterium tuberculosis H37Ra] gi|148723650|gb|ABR08275.1| hypothetical hydrolase [Mycobacterium tuberculosis F11] gi|224775437|dbj|BAH28243.1| putative hydrolase [Mycobacterium bovis BCG str. Tokyo 172] gi|253322469|gb|ACT27072.1| hydrolase [Mycobacterium tuberculosis KZN 1435] gi|289414277|gb|EFD11517.1| hydrolase [Mycobacterium tuberculosis T46] gi|289418474|gb|EFD15675.1| hydrolase [Mycobacterium tuberculosis CPHL_A] gi|289440815|gb|EFD23308.1| hydrolase [Mycobacterium tuberculosis KZN 605] gi|289536998|gb|EFD41576.1| hydrolase [Mycobacterium tuberculosis K85] gi|289541624|gb|EFD45273.1| hydrolase [Mycobacterium tuberculosis T17] gi|289688287|gb|EFD55775.1| hydrolase [Mycobacterium tuberculosis 02_1987] gi|289689040|gb|EFD56469.1| hydrolase [Mycobacterium tuberculosis T92] gi|289696637|gb|EFD64066.1| hydrolase [Mycobacterium tuberculosis EAS054] gi|289715652|gb|EFD79664.1| hydrolase [Mycobacterium tuberculosis T85] gi|298497181|gb|EFI32475.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308328146|gb|EFP16997.1| hydrolase [Mycobacterium tuberculosis SUMu002] gi|308339869|gb|EFP28720.1| hydrolase [Mycobacterium tuberculosis SUMu005] gi|308343881|gb|EFP32732.1| hydrolase [Mycobacterium tuberculosis SUMu006] gi|308363867|gb|EFP52718.1| hydrolase [Mycobacterium tuberculosis SUMu012] gi|323717331|gb|EGB26536.1| hydrolase [Mycobacterium tuberculosis CDC1551A] gi|328460693|gb|AEB06116.1| hydrolase [Mycobacterium tuberculosis KZN 4207] Length = 406 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHG 150 L G+ S +V +R L G LD + FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEIRAALTALGMLDHQEEDLTTGRNVALELFDAQLDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQ ++A+ +Q I+ + L LG V L+ Sbjct: 54 AQLDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQA 113 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL G + + F +A+ +Q +GL G+ TL ++ Sbjct: 114 RLQDLGFY--TGLVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|332982629|ref|YP_004464070.1| spore cortex-lytic enzyme [Mahella australiensis 50-1 BON] gi|332700307|gb|AEE97248.1| spore cortex-lytic enzyme [Mahella australiensis 50-1 BON] Length = 235 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L+ G V ++ +L G D + ++ +AV+ FQ ++GL G+V Sbjct: 34 TGNLYYGAKGDKVAEVQRKLKQWGYYD--GPVDASYGPKTFAAVQQFQRKNGLKVDGVVG 91 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMR 182 +T AM V ++ R Sbjct: 92 PATAAAMGVTLNTGKPSTAYTPSR 115 >gi|114564416|ref|YP_751930.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella frigidimarina NCIMB 400] gi|114335709|gb|ABI73091.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella frigidimarina NCIMB 400] Length = 305 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 45/155 (29%), Gaps = 42/155 (27%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 V++N L GK + +G++ + TP + + R NP W +I + Sbjct: 99 VVINSAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTTVQRKRANPTWTPTVNIRKS 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M + Sbjct: 159 -----------------------------------YAAKGITLPAVWPAGADNPMGLFAL 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + H T F +R +SGCVR+R+ Sbjct: 184 YVGNLYAV--HGTNA--TFGIGLR-VSSGCVRLRD 213 >gi|307945301|ref|ZP_07660637.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] gi|307771174|gb|EFO30399.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] Length = 204 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 52/203 (25%), Gaps = 40/203 (19%) Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q D +T + + + + R K + ++++ L Sbjct: 22 QAAFAQAGGRFFDPNTRQWITYGPTHGNPSGKSPIRRKMVKYSTKYPVGTIVIDTSERRL 81 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 V ++ V VG+ Q RI R P W P + ++ Sbjct: 82 YHVRPNGKAMKYGVGVGKTGFQ-WAGTHRITRKAEWPGWTPPPQMRARE----------- 129 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 + G N + + + +H Sbjct: 130 ------------------------RKKGRILPAHMPGGPNNPLGARALYIG-STLYRIHG 164 Query: 326 TPEPILFNNVVRFETSGCVRVRN 348 T +P +SGC+R+ N Sbjct: 165 TNQPWTIG---GAVSSGCIRLAN 184 >gi|15613858|ref|NP_242161.1| hypothetical protein BH1295 [Bacillus halodurans C-125] gi|10173911|dbj|BAB05014.1| BH1295 [Bacillus halodurans C-125] Length = 881 Score = 68.5 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 18/144 (12%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 + + + F+ A G ++ IA ++ I+ R Sbjct: 10 VGSRGDEVAAIQRQLNQLGFNVGTADGIFGQRTE-----SAVIAFQKQNNLNSDGIVGRL 64 Query: 93 GWPEL-----------PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 W +L P + G+ V ++++RL G + F A Sbjct: 65 TWDKLFDHRASGNHPFPGTLIGTGSRGEQVVKVQQRLNSLGY--NAGVADGIFGQGTRQA 122 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 V FQ + L P G+V T A+ Sbjct: 123 VINFQSDYFLSPDGIVGELTWNAL 146 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 27/181 (14%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 +VG L + + + +P L+ + ++N + A Sbjct: 297 IVGRLTWDVLFRNNTTTVSIPYPGYLISS----GSSGNDVRRIQERLINMGYSVGAADGI 352 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL----------------PIRPLHL 104 PI + + I+ R W +L P L Sbjct: 353 -----FGPITKRAVESFQRDTGLDVDGIVGRLTWNQLFNGANVDNPGGATQSYPGVLLST 407 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S SV+ ++ +L G + F + + AV+ FQ GL G+V T A Sbjct: 408 GSSGDSVRAVQRKLQERGYYH--GVIDGIFGSMTDRAVRSFQHAMGLQVDGIVGRMTWNA 465 Query: 165 M 165 + Sbjct: 466 L 466 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P +G+ V ++ +L G F ESAV FQ ++ L+ G+V Sbjct: 4 PGVLYSVGSRGDEVAAIQRQLNQLGF--NVGTADGIFGQRTESAVIAFQKQNNLNSDGIV 61 Query: 158 DSSTLEAM 165 T + + Sbjct: 62 GRLTWDKL 69 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 2/71 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L +G+ V+ ++ +L G F + E VK FQ L G+V Sbjct: 159 PGFLLRVGSRGEEVKIVQNQLNRLGF--NVGTADGIFGSGTEQGVKDFQTSRNLQVDGIV 216 Query: 158 DSSTLEAMNVP 168 T + Sbjct: 217 GQETWNRLMSS 227 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 23/154 (14%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + E + + + F+ A G ++ + +T + Sbjct: 160 GFLLRVGSRGEEVKIVQNQLNRLGFNVGTADGIFGSGTEQGVKDFQTSRNLQ-----VDG 214 Query: 88 ILSRGGWPEL----------------PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 I+ + W L P L LG + V+ ++ +L + + + Sbjct: 215 IVGQETWNRLMSSSSSGEGINNNVPYPGVLLSLGATGDLVRSVQRQLNSNHY--NAGVVD 272 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F + AV FQ +GL G+V T + + Sbjct: 273 GIFGGQTQQAVMNFQRTNGLSVDGIVGRLTWDVL 306 >gi|158313774|ref|YP_001506282.1| peptidoglycan binding domain-containing protein [Frankia sp. EAN1pec] gi|158109179|gb|ABW11376.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EAN1pec] Length = 187 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 62/244 (25%), Gaps = 74/244 (30%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L+ RL+ G + + A AV Q GL+ G+V +T ++ Sbjct: 3 ALQRRLVELGYWLGEP--NGIYGALTVQAVLAAQKVAGLERDGLVGPATWASLRQGPRPL 60 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + V++ L V++G V G Sbjct: 61 AVT---------------GSGLALEVDVARQLLLVVQDGSVRQILNTSTGTERWY----E 101 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 R R++ + + +D V + Sbjct: 102 VRGQRLLADTPRG---------------------TWHVYRQVDG----VDPGPLG----- 131 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +++ + +H + R + GCVRV N + Sbjct: 132 ----------------GLYRPKYFHTDGIAVHG-----YVSVPGRAASHGCVRVTN--EA 168 Query: 353 DVWL 356 WL Sbjct: 169 MDWL 172 >gi|226311558|ref|YP_002771452.1| spore protein YkuD [Brevibacillus brevis NBRC 100599] gi|226094506|dbj|BAH42948.1| spore protein YkuD [Brevibacillus brevis NBRC 100599] Length = 123 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 D+ + G+++A + + + +H T +P + + GC+R+ Sbjct: 45 DFTIISKVPYPNSYPGGRLSAFGTLWMGLSKPH-YGIHGTNDPSSIGK---YVSHGCIRM 100 Query: 347 --RNIIDLDVWLLKDTP 361 ++ L + TP Sbjct: 101 FNEDVNALAKIVPIGTP 117 Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 1/113 (0%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + + ++I L+ + ++ V +G++ TP I + P + Sbjct: 4 LPSYNIRISIAKLRLDLFDGNRLIRSYPVALGKIATSTPRGDFTIISKVPYPNSYPGGRL 63 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 + + P Y + + GK V + + + G Sbjct: 64 SAFGTLWMGLSKPHYGI-HGTNDPSSIGKYVSHGCIRMFNEDVNALAKIVPIG 115 >gi|254233397|ref|ZP_04926723.1| hypothetical protein TBCG_03842 [Mycobacterium tuberculosis C] gi|124603190|gb|EAY61465.1| hypothetical protein TBCG_03842 [Mycobacterium tuberculosis C] Length = 401 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHG 150 L G+ S +V +R L G LD + FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEIRAALTALGMLDHQEEDLTTGRNVALELFDAQLDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQ ++A+ +Q I+ + L LG V L+ Sbjct: 54 AQLDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQA 113 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL G + + F +A+ +Q +GL G+ TL ++ Sbjct: 114 RLQDLGFY--TGLVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|326905748|gb|EGE52681.1| hydrolase [Mycobacterium tuberculosis W-148] Length = 406 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHG 150 L G+ S +V +R L G LD + FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEIRAALTALGMLDHQEEDLTTGRNVALELFDAQLDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQ ++A+ +Q I+ + L LG V L+ Sbjct: 54 AQLDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQA 113 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL G + + F +A+ +Q +GL G+ TL ++ Sbjct: 114 RLQDLGFY--TGLVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|166368768|ref|YP_001661041.1| lysozyme [Microcystis aeruginosa NIES-843] gi|166091141|dbj|BAG05849.1| probable lysozyme [Microcystis aeruginosa NIES-843] Length = 504 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 78/255 (30%), Gaps = 37/255 (14%) Query: 95 PELPIRPLHLGNSSVS-----VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR- 148 P+L L G S ++ ++ERL G L F + + AV+ FQ Sbjct: 248 PQLNRGLLLKGMSDEDAPGYDIREMQERLKDLGYYQKE--LDGIFGSGTDEAVRKFQADV 305 Query: 149 HGL-DPSGMVDSSTLEAM---NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 G + G V T + + + +R+ K ++ Y+L+ Sbjct: 306 FGHSEADGKVGPKTWAKLWGEETTPTPTPQPAEGTYLRLTKTNQKDGDGLYILI------ 359 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD-- 262 LE ++NG+V V G+ R + + + + + D++ +D Sbjct: 360 LEYIKNGQVKDHLKVCSGQ--RSKQLFRTGPQSVSGSMEPLPEGKWYINDILWAGGKDKY 417 Query: 263 -PQYLKDNNIHMIDEKGKEVF----VEEVDWNSPEPPNFIFRQDPGKINAMAST------ 311 P + + ++ + + PG + Sbjct: 418 GPTVFSNGLGPVTTPIKYVGPNSTRRSAIEIHIDWNGKYCDGPCPGTAGCLGIYDIADYK 477 Query: 312 ----KIEFYSRNNTY 322 + + ++ Y Sbjct: 478 KLVSWLRDTNPHDLY 492 >gi|56694927|ref|YP_164437.1| lysin [Bacillus phage BCJA1c] gi|52631354|gb|AAU85106.1| lysin [Bacillus phage BCJA1c] Length = 355 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G V+ L+E+LI G G F +AV+ FQ G+ G+ Sbjct: 211 TGQVLRHGERGPLVRSLQEQLIDKGFDLGRYGADGVFGDITRNAVRDFQRAAGIAVDGVP 270 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 T A+ + + + V++ R+ V Sbjct: 271 GPQTFRALKAYQPDKGQMVIVDVDRLNVRSRPSFADSAVS 310 >gi|330883400|gb|EGH17549.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 164 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 6/69 (8%) Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV-- 346 ++ + G N + K +H + + F +R + GC R+ Sbjct: 2 HAADGDPLPDVVPAGPDNPLGPFKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYN 57 Query: 347 RNIIDLDVW 355 N+++L Sbjct: 58 NNVLELADM 66 >gi|298243007|ref|ZP_06966814.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297556061|gb|EFH89925.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 545 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 4/108 (3%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 P + ++ ++ WP L + G++ +V L+ +L G S Sbjct: 79 PQTTGAVVSFQSAQGLQADGVVGPQTWPALIVTT-SQGSTGSAVLALQRQLNAHG---AS 134 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + F +AVK FQ HGL G+ T A+ + Sbjct: 135 LSVDGQFGPATAAAVKSFQSSHGLSADGVAGPQTWNALVGSKSSQAYS 182 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 10/106 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGD 123 +T A T KA + + G WP L + G++ +V L+ +L G Sbjct: 214 SFGPQT-ASTAKAFQSAHGLGADGIVGPQTWPVLIVTT-SQGSTGSAVLALQRQLNAHG- 270 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 S + F + E+AVK +Q L G+ ++ Sbjct: 271 --ASLSVDGQFGSATETAVKNYQSSQKLSVDGVAGPQIWSSLVSTA 314 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 18/148 (12%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 + + + A + + P + + + Sbjct: 114 QGSTGSAVLALQR-----QLNAHGASLSVDGQF-GPATAAAVKSFQSSHGLSADGVAGPQ 167 Query: 93 GWPELPIRP---------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L + G + +V ++ L G S + +F S K Sbjct: 168 TWNALVGSKSSQAYSWPDIGQGATGENVYSIQLMLQAHGY---SLPIDGSFGPQTASTAK 224 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 FQ HGL G+V T + V Sbjct: 225 AFQSAHGLGADGIVGPQTWPVLIVTTSQ 252 >gi|283853882|ref|ZP_06371096.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfovibrio sp. FW1012B] gi|283570724|gb|EFC18770.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfovibrio sp. FW1012B] Length = 234 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 21/152 (13%) Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 + G + + +R + + R+++ Y +P L R+ + Sbjct: 73 YQPGLPDDQMAEFLASKNRYS--IEVRLSQRTLYLYENLPDGTRH-----LARRYAVAVP 125 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSP----------EPPNFIFRQDPG-KINAMASTKIEFY 316 ++ G + W P + PG K N M KI Sbjct: 126 GRDMEAPQGWGVVTGISFEPWWRPTPAMKERALKKGKQLPEVVKPGVKENPMGPFKIILS 185 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H P R TSGC+R++N Sbjct: 186 HGYGYRIHGNNNPGSIG---RPVTSGCIRMQN 214 >gi|227487672|ref|ZP_03917988.1| hydrolase [Corynebacterium glucuronolyticum ATCC 51867] gi|227541382|ref|ZP_03971431.1| hydrolase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092366|gb|EEI27678.1| hydrolase [Corynebacterium glucuronolyticum ATCC 51867] gi|227182933|gb|EEI63905.1| hydrolase [Corynebacterium glucuronolyticum ATCC 51866] Length = 392 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 18/152 (11%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 + + E ++ ++ + + E +++ A + IL+ Sbjct: 7 LSVGDRSPRVAEVRATLARLGRNDAFSAPLADDFRVEETLFDEELSELLCAFQQSRGILA 66 Query: 91 RGGWPELPIRPLH--------------LG--NSSVSVQRLRERLIISGDLDPSKGLSVAF 134 G E +R L G V +L+ +L G + + + Sbjct: 67 TGMIDEPTLRALREASYTLGTRVLNFIPGKQMVGDDVVQLQTQLQELGFY--TDKVDGHY 124 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 D AVK +Q+ GL G+ T+ A++ Sbjct: 125 DDVTYEAVKTYQLNSGLTEDGICGPETVRALS 156 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 21/196 (10%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGL----SVAFDAYVESAVKLFQM 147 + ++ L +G+ S V +R L G P FD + + FQ Sbjct: 1 MVVLKKLSVGDRSPRVAEVRATLARLGRNDAFSAPLADDFRVEETLFDEELSELLCAFQQ 60 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 G+ +GM+D TL A+ + +N + K+++ + + + Sbjct: 61 SRGILATGMIDEPTLRALRE-ASYTLGTRVLNFIPGKQMVGDDVVQLQTQLQELGFYTDK 119 Query: 208 VENGKVGLRSTVIVGRVDRQ--------TPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 V+ + + P ++ + + P +I +++++ Sbjct: 120 VDGHYDDVTYEAVKTYQLNSGLTEDGICGPETVRALSLLGHHITGGNPLAIRERELV--- 176 Query: 260 RQDPQYLKDNNIHMID 275 ++ L +ID Sbjct: 177 -RNAGPLLSGKRVVID 191 >gi|310641655|ref|YP_003946413.1| l,d-transpeptidase ykud [Paenibacillus polymyxa SC2] gi|309246605|gb|ADO56172.1| Putative L,D-transpeptidase YkuD [Paenibacillus polymyxa SC2] Length = 112 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 9/109 (8%) Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ L YLKD + ++ V + +V +P I + P + + Sbjct: 6 IVVDLSDRRLYLKDGSQIVLSY---PVGIGKVATQTPHGQFTIINKQPNPGGPFGAFWMG 62 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + +H T EP + GC+R++N +++L + TP Sbjct: 63 LSKPH-YGIHGTNEPSSIGQ---MVSHGCIRMQNKDVLELQEKVSIGTP 107 >gi|15964534|ref|NP_384887.1| hypothetical protein SMc00924 [Sinorhizobium meliloti 1021] gi|307308482|ref|ZP_07588186.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307322405|ref|ZP_07601762.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|15073711|emb|CAC45353.1| Hypothetical protein SMc00924 [Sinorhizobium meliloti 1021] gi|306891940|gb|EFN22769.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306901085|gb|EFN31693.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 246 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 61/212 (28%), Gaps = 45/212 (21%) Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + V +++ P Q+ + E K ++++ L V Sbjct: 74 PANAAVQPASIARRQKPAK---SQIDPQFLPQMIAYETKEKPGTIVIDTNNRFLYLVTGN 130 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 R V VG+ + RI R P W P+ +I ++ + Sbjct: 131 GEARRYGVGVGKPGFE-WAGEHRITRKAEWPNWTPPQEMIARE-----------AARGHY 178 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 R D G N + + + +H T P Sbjct: 179 ------------------------LPARMDGGPENPLGARAMYLG-STLYRIHGTNAPWT 213 Query: 332 FNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 +SGC+R+RN ++DL + T Sbjct: 214 IGYG---VSSGCIRMRNEDVVDLYERVKVGTK 242 >gi|288549819|ref|ZP_05968304.2| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Enterobacter cancerogenus ATCC 35316] gi|288317538|gb|EFC56476.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Enterobacter cancerogenus ATCC 35316] Length = 323 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W + ++ Sbjct: 116 IVVNVAEMRLYYYPPGSNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPTWTPTPNTRRE 175 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + E G N M I Sbjct: 176 -----------------------------------YAKEGKTLPAFVPAGPDNPMGLYAI 200 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-YHIEEVV 372 H T F +R + GC+R+RN +L + P +R I+ V Sbjct: 201 YIGRLYAI--HGTNS--NFGIGLR-VSQGCIRLRNAD--IKYLFDNVPVGTRVELIDRPV 253 Query: 373 KTRKT----TPVKLATEV 386 K V++ + Sbjct: 254 KMTTEPDGSRWVEVHEPL 271 >gi|297201935|ref|ZP_06919332.1| lipoprotein [Streptomyces sviceus ATCC 29083] gi|197712688|gb|EDY56722.1| lipoprotein [Streptomyces sviceus ATCC 29083] Length = 279 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 4/143 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P G+S V+ L+ RL L G + ++D E AVK FQ + GL +G Sbjct: 70 PAVLWSRGDSGRDVRELQARLRQVAWL--YDGPTGSYDDLTERAVKGFQGKRGLPRTGRT 127 Query: 158 DSSTLEAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 D+ T + + + + + + R + ++ + +L + +G+ + Sbjct: 128 DTVTWKRLKAMTHEPGKWELYLMGGQPADAPDPRCLTGRVLCISKTSRTLRWMIDGRTVM 187 Query: 216 RSTVIVGRVDRQTPILHSRINRI 238 +V G V T + Sbjct: 188 TVSVRFGSVGTPTREGVFSVYWK 210 >gi|325003245|ref|ZP_08124357.1| N-acetylmuramoyl-L-alanine amidase [Pseudonocardia sp. P1] Length = 386 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S +V+ +R L G L P FD V+ AV++FQ GL G+V Sbjct: 4 LRRGDSGPAVREIRATLRELGLLPALSPGTSDRDVFDDEVDHAVRVFQQGRGLITDGIVG 63 Query: 159 SSTLEAMN 166 T A+ Sbjct: 64 PDTARALR 71 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 27/127 (21%) Query: 66 DIPIISKET---------IAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGNS---- 107 +P +S T + + + +++ G R L LG+ Sbjct: 25 LLPALSPGTSDRDVFDDEVDHAVRVFQQGRGLITDGIVGPDTARALREAGWSLGDRMLSF 84 Query: 108 -------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 V L+ERL+ G S FD E A+ FQ +G+ P GM Sbjct: 85 TLSTPTNGDDVATLQERLLELGY--NPGRPSGLFDQQTEQALMRFQRDYGMVPDGMCGPE 142 Query: 161 TLEAMNV 167 TL A+ Sbjct: 143 TLRALRQ 149 >gi|313893120|ref|ZP_07826697.1| NlpC/P60 family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442473|gb|EFR60888.1| NlpC/P60 family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 270 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L G+ SV ++++LI G + + + + AV+LFQ GL G Sbjct: 24 MVGATTLQYGDKGKSVTAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDG 81 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLM 181 +V +T A+ L N Sbjct: 82 IVGPATYNALMGAPRSTKAVLTQNAA 107 >gi|282850480|ref|ZP_06259859.1| NlpC/P60 family protein [Veillonella parvula ATCC 17745] gi|294792103|ref|ZP_06757251.1| endopeptidase, cell wall lytic activity [Veillonella sp. 6_1_27] gi|282579973|gb|EFB85377.1| NlpC/P60 family protein [Veillonella parvula ATCC 17745] gi|294457333|gb|EFG25695.1| endopeptidase, cell wall lytic activity [Veillonella sp. 6_1_27] Length = 270 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L G+ SV ++++LI G + + + + AV+LFQ GL G Sbjct: 24 MVGATTLQYGDKGKSVTAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDG 81 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLM 181 +V +T A+ L N Sbjct: 82 IVGPATYNALMGAPRSTKAVLTQNAA 107 >gi|269798242|ref|YP_003312142.1| NLP/P60 protein [Veillonella parvula DSM 2008] gi|294793974|ref|ZP_06759111.1| protein P60 [Veillonella sp. 3_1_44] gi|269094871|gb|ACZ24862.1| NLP/P60 protein [Veillonella parvula DSM 2008] gi|294455544|gb|EFG23916.1| protein P60 [Veillonella sp. 3_1_44] Length = 270 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L G+ SV ++++LI G + + + + AV+LFQ GL G Sbjct: 24 MVGATTLQYGDKGKSVTAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDG 81 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLM 181 +V +T A+ L N Sbjct: 82 IVGPATYNALMGAPRSTKAVLTQNAA 107 >gi|307266815|ref|ZP_07548338.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918156|gb|EFN48407.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 327 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ V L+ RL + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDKGPFVVNLQARLKSLSF--DPGPIDGIFGRKTEEAVKAYQQSRGLPVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|226358219|ref|YP_002787958.1| bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; Muramoylpentapeptide carboxypeptidase [Deinococcus deserti VCD115] gi|226319862|gb|ACO47856.1| putative bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; Muramoylpentapeptide carboxypeptidase [Deinococcus deserti VCD115] Length = 359 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 4/102 (3%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S P + A A ++ W L R + G+S +VQ + +L G Sbjct: 261 SYGPATASAVSAFQSGAGLTPDGVIGSATWERLI-RTVRRGDSGPAVQAAQGQLAARGY- 318 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F A ESAV+ FQ GL G+V +T A+ Sbjct: 319 --GVTADGVFGAGTESAVRSFQSSRGLTSDGIVGPNTWHALE 358 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP G + V+ + L+ G S ++ SAV FQ GL P Sbjct: 230 WPTT-----RSGQTGERVRSAQRLLVSHG---QSLTADGSYGPATASAVSAFQSGAGLTP 281 Query: 154 SGMVDSSTLEAMNVPVD 170 G++ S+T E + V Sbjct: 282 DGVIGSATWERLIRTVR 298 >gi|297192509|ref|ZP_06909907.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486] gi|197718051|gb|EDY61959.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486] Length = 282 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 5/200 (2%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSS 108 + + S P + +++E A + S P + G Sbjct: 23 DAPSAGTPSAAPATSASTPPASPTPSASESETAEPSKKPSPSPSTQKPAPKVLMAPGAKG 82 Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA-MNV 167 V+ L+ RL G D + + +AVK FQ + GL +G D+ T + + + Sbjct: 83 EQVRELQARLAQIGWFD--DKPTGTYGPVTTTAVKGFQGKRGLLATGSTDTVTWDRLLGM 140 Query: 168 PVDLRIRQLQVNLMRI--KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 +L ++ KL + M R + ++ +L + +GKV V G Sbjct: 141 TTKPTRAELDGKDVKKPQAKLDPRCMTGRVMCISKTTRTLSWMIDGKVLSTMDVRFGSQY 200 Query: 226 RQTPILHSRINRIMFNPYWV 245 T ++ + Sbjct: 201 TPTREGVFKVGWKSRDHVST 220 >gi|134301026|ref|YP_001114522.1| cell wall hydrolase SleB [Desulfotomaculum reducens MI-1] gi|134053726|gb|ABO51697.1| cell wall hydrolase, SleB [Desulfotomaculum reducens MI-1] Length = 234 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V+ +++RL G D + F SAV+ FQ HGL G+V T A Sbjct: 36 GSSGTKVRAVQQRLKDWGYYD--GPVDGYFSGKTASAVRKFQAYHGLATDGIVGPKTFSA 93 Query: 165 MNVPVDLR 172 M + R Sbjct: 94 MGLYTPPR 101 >gi|284048182|ref|YP_003398521.1| NLP/P60 protein [Acidaminococcus fermentans DSM 20731] gi|283952403|gb|ADB47206.1| NLP/P60 protein [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G S V ++E+L++ G + A +AVK +Q GL G++ + Sbjct: 24 SFKPGQSGPEVAAIQEQLLMEGY--DIGIPDGVYGARTVAAVKKYQASMGLAADGVIGNF 81 Query: 161 TLEAMNVPVDLRIRQLQVN 179 T + + R L N Sbjct: 82 TYKKLMGREMPTHRTLNTN 100 >gi|310642862|ref|YP_003947620.1| cell wall hydrolase, sleb [Paenibacillus polymyxa SC2] gi|309247812|gb|ADO57379.1| cell wall hydrolase, SleB [Paenibacillus polymyxa SC2] Length = 217 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 6/133 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G S V L+++L G G + + + AV FQ HGL P G+ Sbjct: 30 SSALKKGIQSERVLELQQQLHSLGYFK--AGFTGYYGSLTSKAVARFQRDHGLAPDGIAG 87 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV-LVNIPAASLEAVENGKVGLRS 217 ++T ++ +R+ L + + + G + V + A L V++G+ Sbjct: 88 AATQAKLDSFGKVRVTALD---QLARIIYSEARGESFEGQVAVGAVVLNRVQSGEFPSSI 144 Query: 218 TVIVGRVDRQTPI 230 ++ + + T + Sbjct: 145 PDVILQPGQFTAV 157 >gi|229086722|ref|ZP_04218889.1| hypothetical protein bcere0022_33010 [Bacillus cereus Rock3-44] gi|228696596|gb|EEL49414.1| hypothetical protein bcere0022_33010 [Bacillus cereus Rock3-44] Length = 180 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ V G+ + TP + Sbjct: 11 WPLGDNPRAGDPFIIVNKQTNKLAYIDDGKIQKIFPVATGKTNELTPEGTFDVVMK---- 66 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 +DP Y+ N Sbjct: 67 -----------------AKDPYYIAKN------------------------------IPG 79 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S I F + +H T +P + + GC+R++ +L Sbjct: 80 GSPKNPLGSRWIGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKHD--VEYLF 134 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + KT + Sbjct: 135 DRIPIGTKVLIVKSKKTFQ 153 >gi|325924744|ref|ZP_08186181.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] gi|325544836|gb|EGD16182.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] Length = 630 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 L V+ L++ L G D A+ AVK FQ HGL Sbjct: 429 APGVLRENARGAEVRTLQQTLQQLGYKDAGGNEIKADGAYGQRTSEAVKAFQRAHGLQDD 488 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V T A+ + + N Sbjct: 489 GVVGRDTQAALKQAEKTPLLSEKTN 513 >gi|270263801|ref|ZP_06192069.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia odorifera 4Rx13] gi|270041994|gb|EFA15090.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia odorifera 4Rx13] Length = 306 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 64/208 (30%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L G + + +G++ + TP+ + + R P Sbjct: 91 LILPDAPREGIIINSAEMRLYYYPKGSNTVVVLPIGIGQLGKDTPLNWITSVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + ++++ + + G Sbjct: 151 WT-PTAKMREE----------------------------------YAADGEILPAVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ +L + P Sbjct: 176 PDNPMGLYALYVGRLYAI--HGTNA--NFGIGLR-VSHGCVRLR-ADDI-KYLFDNVPVG 228 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R ++ V+ + V++ + Sbjct: 229 TRVQFINEPVKATVEPDGSRYVEVHNPL 256 >gi|78049307|ref|YP_365482.1| hypothetical protein XCV3751 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037737|emb|CAJ25482.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 630 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 L V+ L++ L G D A+ AVK FQ HGL Sbjct: 429 APGVLRENARGAEVRTLQQTLQQLGYKDAGGNELKADGAYGQRTSEAVKAFQRAHGLQDD 488 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V T A+ + + N Sbjct: 489 GVVGRDTQAALKQAEKTPLLSEKTN 513 >gi|118591608|ref|ZP_01549005.1| hypothetical protein SIAM614_28472 [Stappia aggregata IAM 12614] gi|118435936|gb|EAV42580.1| hypothetical protein SIAM614_28472 [Stappia aggregata IAM 12614] Length = 226 Score = 68.1 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 64/215 (29%), Gaps = 56/215 (26%) Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDL------RIRQLQVNLMRIKKLLEQKMGLRYV 196 + FQ + + D +T + ++ R Q R + Sbjct: 30 QSFQTQ-------IYDPTTRKWVDYTPRAAAKFYNRHGQSPEEFRRQVVPFRTAEKPGTI 82 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +++ L V+ +R + VGR D +I R+ P W P +I + Sbjct: 83 IIDGDRHFLYLVQPNFQAIRYGIGVGR-DGFGWAGIVKIGRMQEWPTWTPPPEMIAR--- 138 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF- 315 E W + G N + + + Sbjct: 139 -------------------------DPESAKWANG--------MPGGPDNPLGARAMYLY 165 Query: 316 -YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 ++++ Y +H T +P +SGC+R+ N Sbjct: 166 VGNKDSIYRIHGTNQPWTIG---LNISSGCIRLNN 197 >gi|291571162|dbj|BAI93434.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 303 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 12/114 (10%) Query: 63 IDSDI-PIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---------LHLGNSSVSVQ 112 +DS P + I ++ R W L P + G+ V+ Sbjct: 188 VDSLFGPRTERALINFQLSKGLRPTGVVDRSTWQALSKDPHQQTIAETLIKQGDRGSKVK 247 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L+ RL ++G + F +AV FQ+ GL+ +G+VD T + + Sbjct: 248 TLQTRLELTGH--DPGPVDGIFGPKTLAAVSDFQLAMGLESTGVVDDKTWKVLG 299 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V V L++RL + G + F E A+ FQ+ GL P+G+VD S Sbjct: 161 TLARGTQGVQVAGLQQRLEVHGF--SVGRVDSLFGPRTERALINFQLSKGLRPTGVVDRS 218 Query: 161 TLEAMNVPV 169 T +A++ Sbjct: 219 TWQALSKDP 227 >gi|238018984|ref|ZP_04599410.1| hypothetical protein VEIDISOL_00846 [Veillonella dispar ATCC 17748] gi|237864468|gb|EEP65758.1| hypothetical protein VEIDISOL_00846 [Veillonella dispar ATCC 17748] Length = 269 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L G+ SV ++++LI G + + + + AV+LFQ GL G Sbjct: 24 MVGATTLQYGDKGKSVTAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDG 81 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLM 181 +V +T A+ L N Sbjct: 82 IVGPATYNALMSAPRSTKAVLTQNAA 107 >gi|194014419|ref|ZP_03053036.1| peptidoglycan binding protein [Bacillus pumilus ATCC 7061] gi|194013445|gb|EDW23010.1| peptidoglycan binding protein [Bacillus pumilus ATCC 7061] Length = 166 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 48/153 (31%), Gaps = 11/153 (7%) Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW-VIPRSIIQKDMMALLRQDPQYLKDNN 270 + R+T + + + + P +I + +++ + Sbjct: 17 ALDFRTTTEALKAANPSLQGREPLQNEVIIIPGLPDPNTIPYRISVSISSKRLVLFS--G 74 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 +I + + +P +I + P + + + +H T P Sbjct: 75 SELIRSY--PIATGRILNMTPTGSYYIVNRQPNPGGPFGAYWLSLSKVH-YGIHGTNNPS 131 Query: 331 LFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + GC+R+ +N+I+L + TP Sbjct: 132 SIGK---AVSRGCIRMYNQNVIELASIVPNGTP 161 >gi|241203249|ref|YP_002974345.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857139|gb|ACS54806.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 249 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 41/204 (20%) Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ R + + V T+ A+N + R ++ + + ++++ Sbjct: 68 FQRRI-IRRAPQVSPQTVSAINPGIPSIRRPIEPQYLPQVVDYDTTEKPGTIVIDTNNRF 126 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V G R V VG+ + +I R P W P +I ++ Sbjct: 127 LYLVMQGGKARRYGVGVGKPGFE-WAGAHKITRKTEWPDWTPPSEMISRE---------- 175 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + R D G N + + + +H Sbjct: 176 -AAKGHY------------------------LPARMDGGAENPLGARAMYLG-STLYRIH 209 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T P + +SGC+R+RN Sbjct: 210 GTNAPWSIGS---AVSSGCIRLRN 230 >gi|209523125|ref|ZP_03271681.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209496276|gb|EDZ96575.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 286 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 18/147 (12%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI-PIISKETIAQTEKAIAFYQDI 88 + + + F IDS P + I + Sbjct: 144 TLARGTEGAQVAGLQQRLEVHGFSVG------RIDSLFGPRTERSLIQFQLAKGLRPTGV 197 Query: 89 LSRGGWPELPIRP---------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + R W L P + G+ V+ L+ RL ++G + F Sbjct: 198 VDRSTWQALSKDPHQQTIAETLIKQGDRGSKVRTLQTRLELTGH--DPGPVDGIFGPKTL 255 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SAV FQ+ GL+ +G+VD T + + Sbjct: 256 SAVSDFQLAMGLEATGVVDEKTWKVLG 282 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V L++RL + G + F E ++ FQ+ GL P+G+VD S Sbjct: 144 TLARGTEGAQVAGLQQRLEVHGF--SVGRIDSLFGPRTERSLIQFQLAKGLRPTGVVDRS 201 Query: 161 TLEAMNVPV 169 T +A++ Sbjct: 202 TWQALSKDP 210 >gi|228998939|ref|ZP_04158522.1| hypothetical protein bmyco0003_34970 [Bacillus mycoides Rock3-17] gi|229006470|ref|ZP_04164123.1| hypothetical protein bmyco0002_33810 [Bacillus mycoides Rock1-4] gi|228754783|gb|EEM04175.1| hypothetical protein bmyco0002_33810 [Bacillus mycoides Rock1-4] gi|228760814|gb|EEM09777.1| hypothetical protein bmyco0003_34970 [Bacillus mycoides Rock3-17] Length = 186 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 59/199 (29%), Gaps = 63/199 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L +++GK+ + G+ + TP I Sbjct: 17 WPLGDNPRAGDPFIIVNKQTNKLAYIDDGKIQKVFPIATGKTNELTPEGSFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 ++P Y+ + Sbjct: 73 -----------------AKNPYYIAKD------------------------------IPG 85 Query: 303 G-KINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F +R+ +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARDTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKTRK 376 P ++ I + +T + Sbjct: 141 DRIPIGTKVWIVKSKRTFQ 159 >gi|254472343|ref|ZP_05085743.1| protein ybis [Pseudovibrio sp. JE062] gi|211958626|gb|EEA93826.1| protein ybis [Pseudovibrio sp. JE062] Length = 203 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 55/192 (28%), Gaps = 42/192 (21%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 D+ + + + R ++++ L V++ +R Sbjct: 34 DTRQWDIFPDTPAMASSSARRKYKRKLITYRTNEKPGTIIIDTDKRYLYHVQDNGKAMRY 93 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + VGR + RI R P W P + +++ R P+Y+ Sbjct: 94 GIGVGREGFE-WNGTERITRKAKWPGWTPPEEMRRRE-AKKGRILPRYM----------- 140 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVV 336 G N + + + Y +H T E + Sbjct: 141 -----------------------KGGPENPLGARALYL--GATIYRIHGTTEDWSIGH-- 173 Query: 337 RFETSGCVRVRN 348 +SGC+R+ N Sbjct: 174 -AVSSGCIRMFN 184 >gi|293393015|ref|ZP_06637332.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia odorifera DSM 4582] gi|291424549|gb|EFE97761.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia odorifera DSM 4582] Length = 306 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 65/226 (28%), Gaps = 62/226 (27%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ + +++N L G + + +G++ + TP+ + + R P Sbjct: 91 LILPDAPRQGIIINSAEMRLYYYPKGSNTVVVLPIGIGQLGKDTPLNWVTSVQRKKDGPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P + ++++ + + G Sbjct: 151 WT-PTAKMREE----------------------------------YAADGEILPAVFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GCVR+R D+ +L P Sbjct: 176 PDNPMGLYALYVGRLYAI--HGTNAN--FGIGLR-VSHGCVRLR-ADDI-KYLFDSVPVG 228 Query: 364 SR-YHIEEVVK-----------------TRKTTPVKLATEVPVHFV 391 +R I E VK + +K VPV Sbjct: 229 TRVQFINEPVKASVEPDGSRYLEVHNPLSANEEELKSKDPVPVTIT 274 >gi|302873222|ref|YP_003841855.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307688611|ref|ZP_07631057.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302576079|gb|ADL50091.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 508 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 26/154 (16%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + E + E ++ FD + + T A + Sbjct: 120 AASALKLGSSGEAVKELQVNLTKLGFDTKGTDG---------VFGQNTYNAVV-AFQNSR 169 Query: 87 DILSRGGWP--------------ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + + G P L +G+S V +L+ L G + G Sbjct: 170 GLTADGIVGLNTKNAIDTAISALNNPSLALKIGSSGDEVIQLQVNLTRLGY--DTNGADG 227 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F AV FQ GL G+V ++T A+ Sbjct: 228 VFGQNTYDAVVAFQTAKGLTADGIVGAATKNAIT 261 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 72/236 (30%), Gaps = 31/236 (13%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L LG+S +V+ L+ L G +KG F +AV FQ GL G+V Sbjct: 120 AASALKLGSSGEAVKELQVNLTKLGF--DTKGTDGVFGQNTYNAVVAFQNSRGLTADGIV 177 Query: 158 DSSTLEAMNV---------------PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 +T A++ + QLQVNL R+ + N Sbjct: 178 GLNTKNAIDTAISALNNPSLALKIGSSGDEVIQLQVNLTRL--GYDTNGADGVFGQNTYD 235 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY-WVIPRSIIQKDMMALLRQ 261 A V ++ + + I + N S Q+ + Sbjct: 236 A--------VVAFQTAKGLTADGIVGAATKNAITEALKNVGTSNNNTSSSQQIALKKALA 287 Query: 262 DPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFI-FRQDPGKINAMASTKIE 314 + + + G+ + V + WN + R+ + NA+ Sbjct: 288 ITSSFEGSGFVNVTGNFDGQGISVGALQWNIGQGSLQPLLRRMDTENNALTRQIFG 343 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRE 116 + + + +T +T+ A A + + L L G++ V L+ Sbjct: 8 SISALLSGTSNTSATKTANETKTATATANLVAAASTSDSLSISGTLQKGSTGQEVMDLQN 67 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L G + + F +SAV FQ GL G+V + T A++ Sbjct: 68 ALKKLGYF--TSTVDGDFGDLTKSAVIKFQAAKGLTQDGIVGTETKAAIS 115 >gi|220931432|ref|YP_002508340.1| cell wall hydrolase SleB [Halothermothrix orenii H 168] gi|219992742|gb|ACL69345.1| cell wall hydrolase SleB [Halothermothrix orenii H 168] Length = 229 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + + G + EL R L G+ V L+ +L + F E AVKLFQ Sbjct: 24 KVEASGYYMELGTRILKKGDEGPDVAILQRKLKELNLY--RGKIDGIFGPGTEKAVKLFQ 81 Query: 147 MRHGLDPSGMVDSSTLEAMNV 167 ++ L G+V T + Sbjct: 82 EKNKLKVDGIVGPGTYSKLPK 102 >gi|329922685|ref|ZP_08278237.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] gi|328942027|gb|EGG38310.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] Length = 114 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 293 PPNFIFR-QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 P N+ + P + + + +H T +P R + GC+R+ ++ Sbjct: 42 PGNYTIVNKQPNPGGPFGAYWLGLSKPH-YGIHGTNDPSSIG---RSVSHGCIRMYNEDV 97 Query: 350 IDLDVWLLKDT 360 ++L + T Sbjct: 98 VELASLVPIHT 108 >gi|282555154|gb|ADA82673.1| L,D-transpeptidase [endosymbiont of Polyrhachis macropus] Length = 309 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPY 243 L+ +++N L +N + + +G + TP + + R NP Sbjct: 90 LILPNTPHEGIIINSAEMRLYFYPKNSNKIIVFPIGIGEIGNNTPFNWVTSVQRKKHNPV 149 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W IP I+ + + + G Sbjct: 150 W-IPTKKIRDEYL----------------------------------IQGTILPKIIASG 174 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R + GC+R+R D+ +L ++ P Sbjct: 175 PHNPMGLYALYIGKLYAI--HGTNAN--FGIGLR-ISHGCIRLR-ADDI-KYLFQNVPLG 227 Query: 364 SRYHI 368 +R Sbjct: 228 TRVQF 232 >gi|222529549|ref|YP_002573431.1| spore cortex-lytic enzyme [Caldicellulosiruptor bescii DSM 6725] gi|222456396|gb|ACM60658.1| spore cortex-lytic enzyme [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V +++RL G D + + AV+ FQ ++GL G+ S TL A Sbjct: 41 GSTGPEVIEIQKRLKQWGYYD--GPIDGIYGYKTYMAVRYFQAKNGLKVDGIAGSETLRA 98 Query: 165 MNVPVDLR 172 + + R Sbjct: 99 LGIVTTTR 106 >gi|24113382|ref|NP_707892.1| hypothetical protein SF2058 [Shigella flexneri 2a str. 301] gi|30063442|ref|NP_837613.1| hypothetical protein S2168 [Shigella flexneri 2a str. 2457T] gi|24052400|gb|AAN43599.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041695|gb|AAP17422.1| hypothetical protein S2168 [Shigella flexneri 2a str. 2457T] gi|281601448|gb|ADA74432.1| putative exported protein ErfK [Shigella flexneri 2002017] Length = 311 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W +I ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNIRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|313649766|gb|EFS14189.1| hypothetical protein SF2457T_1734 [Shigella flexneri 2a str. 2457T] gi|332756943|gb|EGJ87287.1| hypothetical protein SFK671_2511 [Shigella flexneri K-671] gi|332759868|gb|EGJ90169.1| hypothetical protein SF274771_1174 [Shigella flexneri 2747-71] gi|332766515|gb|EGJ96723.1| L,D-transpeptidase ErfK [Shigella flexneri 2930-71] gi|333017362|gb|EGK36679.1| hypothetical protein SFK304_2659 [Shigella flexneri K-304] Length = 310 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W +I ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNIRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|308068757|ref|YP_003870362.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus polymyxa E681] gi|305858036|gb|ADM69824.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus polymyxa E681] Length = 112 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 9/109 (8%) Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ L YLKD + ++ V + ++ +P I + P + + Sbjct: 6 IVVDLSDRRLYLKDGDQIVLSY---PVGIGKLATQTPHGQFTIINKQPNPGGPFGAFWMG 62 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + +H T EP + GC+R++N +++L + TP Sbjct: 63 LSKPH-YGIHGTNEPWSIGK---LVSHGCIRMQNKDVLELQEKVSIGTP 107 >gi|294499183|ref|YP_003562883.1| autolytic lysozyme [Bacillus megaterium QM B1551] gi|294349120|gb|ADE69449.1| autolytic lysozyme [Bacillus megaterium QM B1551] Length = 433 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 14/161 (8%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+S ++V+ L++ L G G + +AVK FQ ++GL +G Sbjct: 220 PSAQLQQGDSGLAVKELQQNLTKLGFDLSQHGTDGQYGNETTAAVKAFQEKYGLTSTGKA 279 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 D TL M + ++ +L ++ L G +Y +E + V Sbjct: 280 DERTLAKMMELLKGISNPIEESLPKVTSL-----GDKYSFQVKAKKDIEVYKYANVTENF 334 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII-QKDMMA 257 I ++ I W +P + KD+ Sbjct: 335 RTI-----KKDTIFSVYGYT---YAAWAVPGGFVQIKDVEP 367 >gi|167770795|ref|ZP_02442848.1| hypothetical protein ANACOL_02146 [Anaerotruncus colihominis DSM 17241] gi|167666835|gb|EDS10965.1| hypothetical protein ANACOL_02146 [Anaerotruncus colihominis DSM 17241] Length = 286 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V+++++RL G + F + AV FQ ++GL G+ ++TL Sbjct: 95 KTGSRGNEVRQIQQRLKNWGYYTGE--VDGIFGVETKKAVMSFQRKNGLTVDGIAGNATL 152 Query: 163 EAMNVPVDL 171 +AM + Sbjct: 153 KAMGIQSSQ 161 >gi|291570839|dbj|BAI93111.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 225 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+SS V L+ +L G F AVK FQ +GL G+ Sbjct: 160 KSLSHGDSSSRVANLQHKLAYYGYFHARAT--GYFGPITTKAVKAFQRDYGLRVDGVAGP 217 Query: 160 STLEAMNV 167 +TL A+ + Sbjct: 218 ATLAALGM 225 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V +L+ L G + F + + +VK FQ +GL G+V +T A Sbjct: 67 GSSGNHVVQLQNALANHGYF--RARSTGYFGSMTKHSVKAFQRDYGLAVDGIVGPATASA 124 Query: 165 MN 166 + Sbjct: 125 LG 126 >gi|56965297|ref|YP_177029.1| hypothetical protein ABC3535 [Bacillus clausii KSM-K16] gi|81365181|sp|Q5WC42|YKUD_BACSK RecName: Full=Putative L,D-transpeptidase YkuD; AltName: Full=Spore protein YkuD homolog gi|56911541|dbj|BAD66068.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 165 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 10/135 (7%) Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + + + P P +I + ++L + L + ++ I + V ++ +P Sbjct: 40 VGQSIVIPGLPNPNTIPYEIHVSLSQHQLTLLHNGSVVKIY----PIAVGKMLTQTPTGN 95 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 I + P + + + +H T +P + GC+R+ N Sbjct: 96 FVIVNKAPNPGGPFGTMWMSLSKLH-YGIHGTNDPSSIGKS---VSHGCIRMHNKD--VE 149 Query: 355 WLLKDTPTWSRYHIE 369 L P +R IE Sbjct: 150 ELAATVPIGTRVRIE 164 >gi|149181895|ref|ZP_01860384.1| hypothetical protein BSG1_07801 [Bacillus sp. SG-1] gi|148850434|gb|EDL64595.1| hypothetical protein BSG1_07801 [Bacillus sp. SG-1] Length = 167 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 14/146 (9%) Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP P I+ K + + + + ++ + + + + +R Sbjct: 19 KNPLPGDPFLIVNKQ-TNKIAYIQGEEIRHQYSVATGRTDDLTPQGLFTIIVKAKDPYYR 77 Query: 300 QD--PG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + PG N + + + F +H T + ++GC+R+ N Sbjct: 78 KSDIPGGSPDNPLGTRWMGFDAEGTDGRTYGIHGTNNDDSIGK---YISNGCIRMHNAE- 133 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKT 377 L P+ ++ I + K+ + Sbjct: 134 -VETLFDRVPSGTKILIVKTGKSFEE 158 >gi|302544645|ref|ZP_07296987.1| lipoprotein [Streptomyces hygroscopicus ATCC 53653] gi|302462263|gb|EFL25356.1| lipoprotein [Streptomyces himastatinicus ATCC 53653] Length = 211 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 4/144 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V+ L+ RL G D + F ++V +Q GL +G VDS T + Sbjct: 9 GTSGERVRELQARLRRLGHFDRNPT--GYFGTVTRASVTSYQRARGLSATGSVDSRTWTS 66 Query: 165 MNVPVD--LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + R + K + + R + ++ + +L + NG+V V G Sbjct: 67 LRSRTARPTRDELYPPTTNPLAKPDSRCLTGRVLCISKSSRTLAWMINGRVVSAMDVRFG 126 Query: 223 RVDRQTPILHSRINRIMFNPYWVI 246 T ++N + I Sbjct: 127 SQYTPTREGLFQVNFKSRDHVSTI 150 >gi|295400954|ref|ZP_06810929.1| NLP/P60 protein [Geobacillus thermoglucosidasius C56-YS93] gi|294976956|gb|EFG52559.1| NLP/P60 protein [Geobacillus thermoglucosidasius C56-YS93] Length = 452 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 79/272 (29%), Gaps = 42/272 (15%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG------------IDSDIPIIS---K 72 + + E + F + A +P+ Sbjct: 27 AAEWKVGMSAPQVKELQQLLKEKGFFTYPAATGYFGTITEQAVKAFQASVRLPVTGVVDD 86 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 T A+ ++A A + +G+ V+ L++ L G ++ Sbjct: 87 ATYAKLKEAAAR-------------RTAEMKIGSRGNDVKVLQQNLKQLGYFK-YPEITG 132 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA-----MNVPVDLRIRQLQVNL-----MR 182 + + AVK FQ +GL +G+ D+ T+++ MN ++ + + Sbjct: 133 YYGTITQDAVKRFQQNYGLPVTGIADARTVQSIQNEVMNRRPAQIAQEYVLAIGSQGAEV 192 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 K K + I + + + + ++IN + Sbjct: 193 SKLQQNLKQLGYFTYPKITGYYGTVTADAVRQFQKRYSLPATGKADSQTLAKINEAVAGS 252 Query: 243 YWVIPRSIIQKDM---MALLRQDPQYLKDNNI 271 P++ I+ + +++ LK Sbjct: 253 KTPAPKAAIRLTIGSTGPEVKKVQTKLKQLGY 284 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 +P K + +A + ++ P L +G++ V++++ +L G Sbjct: 228 RYSLPATGKAD----SQTLAKINEAVAGSKTPAPKAAIRLTIGSTGPEVKKVQTKLKQLG 283 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA-MNVPVDLRIRQLQV 178 S ++ + + AVK FQ G+ +G+VD+ T E M ++ + + Sbjct: 284 YFTHS-EITGYYGSITAEAVKQFQKSAGIKATGVVDAETYERLMGQAPQKKLDAIAL 339 >gi|261405715|ref|YP_003241956.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. Y412MC10] gi|261282178|gb|ACX64149.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. Y412MC10] Length = 112 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 293 PPNFIFR-QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 P N+ + P + + + +H T +P R + GC+R+ ++ Sbjct: 40 PGNYTIVNKQPNPGGPFGAYWLGLSKPH-YGIHGTNDPSSIG---RSVSHGCIRMYNEDV 95 Query: 350 IDLDVWLLKDT 360 ++L + T Sbjct: 96 VELASLVPIHT 106 >gi|21228276|ref|NP_634198.1| hypothetical protein MM_2174 [Methanosarcina mazei Go1] gi|20906735|gb|AAM31870.1| conserved protein [Methanosarcina mazei Go1] Length = 309 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 4/158 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S +V++++E LI P G + F E AV+ +Q GL G++ S Sbjct: 28 RVLRRGDSGPAVKKIQEALIFLEIPVPGAGANGIFGDETELAVRSYQEARGLKVDGVIGS 87 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T+ +++ + + V+ + E L+ P VE V Sbjct: 88 ETIGSLDEEFPGVVEKTPVSSATEPYVSEVPTPLKPTPPVKP-PRASPVE---PVKAPDV 143 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 + R + + + I+ + Sbjct: 144 PPVKAPRAPKVGVPPLKIPQPPGVPTVEPPIMTTQAVP 181 >gi|302871645|ref|YP_003840281.1| spore cortex-lytic enzyme [Caldicellulosiruptor obsidiansis OB47] gi|302574504|gb|ADL42295.1| spore cortex-lytic enzyme [Caldicellulosiruptor obsidiansis OB47] Length = 225 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V ++ RL G D + + AV+ FQ ++GL G+ S TL A Sbjct: 41 GSTGPEVIEIQRRLKQWGYYD--GPIDGIYGYKTYMAVRYFQAKNGLKVDGIAGSETLRA 98 Query: 165 MNVPVDLR 172 + + R Sbjct: 99 LGIVTTTR 106 >gi|312109409|ref|YP_003987725.1| NLP/P60 protein [Geobacillus sp. Y4.1MC1] gi|311214510|gb|ADP73114.1| NLP/P60 protein [Geobacillus sp. Y4.1MC1] Length = 452 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 79/272 (29%), Gaps = 42/272 (15%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG------------IDSDIPIIS---K 72 + + E + F + A +P+ Sbjct: 27 AAEWKVGMSAPQVKELQQLLKEKGFFTYPAATGYFGTITEQAVKAFQASVRLPVTGVVDD 86 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 T A+ ++A A + +G+ V+ L++ L G ++ Sbjct: 87 ATYAKLKEAAAR-------------RTAEMKIGSRGNDVKVLQQNLKQLGYFK-YPEITG 132 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA-----MNVPVDLRIRQLQVNL-----MR 182 + + AVK FQ +GL +G+ D+ T+++ MN ++ + + Sbjct: 133 YYGTITQDAVKRFQQNYGLPVTGIADARTVQSIQNEVMNRRPAKIAQEYVLAIGSQGAEV 192 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 K K + I + + + + ++IN + Sbjct: 193 SKLQQNLKQLGYFTYPKITGYYGTVTADAVRQFQKRYSLPATGKADSQTLAKINEAVAGS 252 Query: 243 YWVIPRSIIQKDM---MALLRQDPQYLKDNNI 271 P++ I+ + +++ LK Sbjct: 253 KTPAPKAAIRLTIGSTGPEVKKVQTKLKQLGY 284 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 +P K + +A + ++ P L +G++ V++++ +L G Sbjct: 228 RYSLPATGKAD----SQTLAKINEAVAGSKTPAPKAAIRLTIGSTGPEVKKVQTKLKQLG 283 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA-MNVPVDLRIRQLQV 178 S ++ + + AVK FQ G+ +G+VD+ T E M ++ + + Sbjct: 284 YFTHS-EITGYYGSITAEAVKQFQKSAGIKATGVVDAETYERLMGQAPQKKLDAIAL 339 >gi|295838581|ref|ZP_06825514.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Streptomyces sp. SPB74] gi|295827071|gb|EDY44726.2| ErfK/YbiS/YcfS/YnhG superfamily protein [Streptomyces sp. SPB74] Length = 196 Score = 67.7 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 4/135 (2%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVD 170 L+ RL G F A+ FQ GL SG++D+ T + P Sbjct: 3 ALQARLWSLGFFRQQPT--GYFGEVTARALAAFQRDRGLGASGVLDAVTWGRLRAAGPAP 60 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + + + R + V+ + +L + +G+V V G T Sbjct: 61 TKAELYPETTLPPTDPDPRCRTGRALCVSKKSRTLSWMVDGRVVSVMDVRFGSAYTPTRD 120 Query: 231 LHSRINRIMFNPYWV 245 ++ + Sbjct: 121 GTFKVYWKSRDHVST 135 >gi|223984154|ref|ZP_03634305.1| hypothetical protein HOLDEFILI_01598 [Holdemania filiformis DSM 12042] gi|223963886|gb|EEF68247.1| hypothetical protein HOLDEFILI_01598 [Holdemania filiformis DSM 12042] Length = 262 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +P + G+ + V ++ L G P +S FDA ++ AV+ FQ HGL G+ Sbjct: 180 VPFTQIQKGDKNTEVCVAQDALWALGY--PITKISGVFDAELDQAVRAFQRDHGLVADGI 237 Query: 157 VDSSTLEAM 165 + T EA+ Sbjct: 238 LGKLTWEAL 246 >gi|15614028|ref|NP_242331.1| hypothetical protein BH1465 [Bacillus halodurans C-125] gi|10174082|dbj|BAB05184.1| BH1465 [Bacillus halodurans C-125] Length = 170 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 59/185 (31%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +G +++VNI L V+ GK+ + G+ +TP+ I Sbjct: 18 WPIGPNPTVGDPFLIVNIATNRLAYVDEGKIQKIVPIATGKPSDKTPVGLFTIT------ 71 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 ++ + Y + NI Sbjct: 72 ----------------VKAEQPYYRKKNIA----------------------------GG 87 Query: 303 GKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 N + + + F +++ +H T P R+ T+GC+R++N + +L + Sbjct: 88 DPKNPLGTRWLGFDAKDTEGRTYGIHGTNRPESIG---RYVTAGCIRLQNKEVEELYANI 144 Query: 357 LKDTP 361 T Sbjct: 145 PLGTK 149 >gi|78046052|ref|YP_362227.1| putative lytic enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034482|emb|CAJ22127.1| putative lytic enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 584 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 4/87 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGL 151 P L G++S V +L++ L G D F AV FQ +HGL Sbjct: 385 PASGTSALRHGDNSQDVGKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGL 444 Query: 152 DPSGMVDSSTLEAM-NVPVDLRIRQLQ 177 G+V T A+ P R Q+ Sbjct: 445 QQDGVVGRDTRAALAAQPAQTREAQVA 471 >gi|152976556|ref|YP_001376073.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025308|gb|ABS23078.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cytotoxicus NVH 391-98] Length = 169 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 55/197 (27%), Gaps = 63/197 (31%) Query: 185 KLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L G +++VN L + +GK+ + G+ + TP I Sbjct: 17 WPLGDNPRVGDPFIIVNKENNKLAYINDGKIQNMFPIATGKTNELTPEGTFDIVMK---- 72 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 ++P Y+ N Sbjct: 73 -----------------AKNPYYIAKN------------------------------IPG 85 Query: 303 G-KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 G N + S + F + +H T +P + + GC+R++ +L Sbjct: 86 GSPKNPLGSRWMGFNARGTDGSKYGIHGTNQPSSIGK---YISQGCIRMKKHD--VEYLF 140 Query: 358 KDTPTWSRYHIEEVVKT 374 P ++ I + K+ Sbjct: 141 DRVPIGTKVWIVKSKKS 157 >gi|284053940|ref|ZP_06384150.1| peptidoglycan binding domain-containing protein [Arthrospira platensis str. Paraca] Length = 160 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 12/114 (10%) Query: 63 IDSDI-PIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---------LHLGNSSVSVQ 112 +DS P + I ++ R W L P + G+ V+ Sbjct: 45 VDSLFGPRTERALINFQLSKGLRPTGVVDRSTWQALSKDPHQQTIAETLIKQGDRGSKVK 104 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L+ RL ++G + F +AV FQ+ GL+ +G+VD T + + Sbjct: 105 TLQTRLELTGH--DPGPVDGIFGPKTLAAVSDFQLAMGLESTGVVDDKTWKVLG 156 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V V L++RL + G + F E A+ FQ+ GL P+G+VD S Sbjct: 18 TLARGTQGVQVAGLQQRLEVHGF--SVGRVDSLFGPRTERALINFQLSKGLRPTGVVDRS 75 Query: 161 TLEAMNVPV 169 T +A++ Sbjct: 76 TWQALSKDP 84 >gi|22298230|ref|NP_681477.1| hypothetical protein tsr0688 [Thermosynechococcus elongatus BP-1] gi|22294409|dbj|BAC08239.1| tsr0688 [Thermosynechococcus elongatus BP-1] Length = 84 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSR--NNTYMHDTPEPILFNNVVRFETSGCV 344 D P N + I F+S N +H TP P + + GCV Sbjct: 4 DPAWKNPFTGAVIAGGHPQNPLGRRWIGFWSDGTNWVGLHGTPNPDSIGH---AVSHGCV 60 Query: 345 RVRN--IIDLDVWLLKDTP 361 R+ N I +L + P Sbjct: 61 RMYNRDIEELFEKVQLGVP 79 >gi|147679188|ref|YP_001213403.1| hypothetical protein PTH_2853 [Pelotomaculum thermopropionicum SI] gi|146275285|dbj|BAF61034.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 269 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V R+++RL G + L + AV+ FQ+ +GL P G+V +T +A Sbjct: 77 GTSGDDVYRVQQRLSQWGYY--TGPLDGFYGYETFRAVQDFQINNGLPPDGVVGQATWDA 134 Query: 165 MNVPVDLRIRQLQVNLMRIKK 185 + + V + + Sbjct: 135 LGLSVPEAAPAVSRGAATDRG 155 >gi|78214188|ref|YP_382967.1| hypothetical protein Syncc9605_2687 [Synechococcus sp. CC9605] gi|78198647|gb|ABB36412.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 199 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 43/165 (26%), Gaps = 68/165 (41%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + L +E+G++ LR VG +TP+ R +P W P Sbjct: 65 SRQLILLEHGQLRLRVPAAVGTQGWETPLGEHRALFKAVDPVWRHP-------------- 110 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF----YS 317 G V PG N + S I F + Sbjct: 111 --------------GTGALV-------------------PPGGRNPLGSRWIVFYQDCSN 137 Query: 318 RNN--------------TYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H TP R + GCVR+ + Sbjct: 138 PGGWDGEKVVQVRGCSHVGLHGTPHRWTVG---RAVSHGCVRLYD 179 >gi|312622221|ref|YP_004023834.1| spore cortex-lytic enzyme [Caldicellulosiruptor kronotskyensis 2002] gi|312202688|gb|ADQ46015.1| spore cortex-lytic enzyme [Caldicellulosiruptor kronotskyensis 2002] Length = 225 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V +++RL G D + + AV+ FQ ++GL G+ S TL A Sbjct: 41 GSTGPEVIEIQKRLKQWGYYD--GPIDGIYGYKTYMAVRYFQAKNGLKVDGIAGSETLRA 98 Query: 165 MNVPVDLR 172 + + R Sbjct: 99 LGIVTTTR 106 >gi|254473359|ref|ZP_05086756.1| ErfK/YbiS/YcfS/YnhG [Pseudovibrio sp. JE062] gi|211957475|gb|EEA92678.1| ErfK/YbiS/YcfS/YnhG [Pseudovibrio sp. JE062] Length = 197 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 43/168 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + G ++++ L + + V VGR Q RI R Sbjct: 52 RKQVRYNGSYGPNTIVISTKDRRLYHIRGNGTAMVYGVGVGREGFQ-WAGTHRITRKAEW 110 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P+ +I+++ F Sbjct: 111 PSWTPPKVMIERE------------------------------------RRKGRISFFMK 134 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + S Y +H + EP + +SGC+R+ N Sbjct: 135 GGPNNPLGARAMYIGS--TIYRIHGSNEPWTIGS---AVSSGCIRMAN 177 >gi|121534486|ref|ZP_01666309.1| NLP/P60 protein [Thermosinus carboxydivorans Nor1] gi|121306979|gb|EAX47898.1| NLP/P60 protein [Thermosinus carboxydivorans Nor1] Length = 219 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G+ + ++ RL G + F +SAV FQ GL+ G+V Sbjct: 23 ASGVYEEGDQGPEIAAIQARLRELGY---RLEVDGDFGQATKSAVIAFQKDRGLEADGVV 79 Query: 158 DSSTLEAM 165 + T A+ Sbjct: 80 GAQTYRAL 87 >gi|253577644|ref|ZP_04854953.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251842971|gb|EES71010.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 112 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 9/98 (9%) Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 YL DNN + +G V + + +P I + P + + + +H Sbjct: 16 YLLDNNNVV---RGFPVGIGTMLTQTPVGSYTIVNKAPNPGGPFGAYWMGLSKPH-YGIH 71 Query: 325 DTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 T +P + GC+R+ N +L + T Sbjct: 72 GTDDPSSIGKE---VSHGCIRMYNPDVIELARIVPIGT 106 >gi|331002315|ref|ZP_08325833.1| hypothetical protein HMPREF0491_00695 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410131|gb|EGG89565.1| hypothetical protein HMPREF0491_00695 [Lachnospiraceae oral taxon 107 str. F0167] Length = 539 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 14/179 (7%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 + L + H + + E I ++ I ++E + ++ Sbjct: 162 TLPLLMDANAKHYAAKLGDVGEDVKRIQTRMYELGYLASADLITGTYDEKTQEGALKLQQ 221 Query: 81 AIAFYQDILSRGG-------WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 I + G E+ L LG S VQ ++ RL G L S Sbjct: 222 -INSLSEDGKVGSETMNLLYSDEIKANTLSLGEHSEVVQAIQNRLSELGYLTTSP--DGT 278 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL----RIRQLQVNLMRIKKLLE 188 + E AV++FQ ++ L G + ST + R+ + R++ LL Sbjct: 279 YGNDTELAVRVFQSKNDLVVDGYLGPSTRAVILSSEAKANGLRLGDQNEQVERLQSLLA 337 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ + V+RL+ L +G L+ S F E+A+K FQ +GL G + T Sbjct: 320 LRLGDQNEQVERLQSLLAKAGYLNDSNAT-GYFGEITETALKRFQSNNGLSADGRAGAQT 378 Query: 162 LEAMN 166 +N Sbjct: 379 FAKLN 383 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + +++ERL+ G ++ + + F SAV +FQ ++GL G++ ST Sbjct: 104 LEEGVQHSYIAKVQERLMELGFMEHDEPTN-YFGNVTRSAVMIFQRQNGLAQDGIIGPST 162 Query: 162 L 162 L Sbjct: 163 L 163 >gi|294498419|ref|YP_003562119.1| endopeptidase LytF [Bacillus megaterium QM B1551] gi|294348356|gb|ADE68685.1| endopeptidase LytF (cell wall hydrolase) [Bacillus megaterium QM B1551] Length = 303 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 YQ ++ L G +S V+++++ L G + + F ++AV Sbjct: 88 YQALIGNSTSTVTNGTLLKYGMTSNEVEKVQQLLKDKGYF--NATPTGYFGTVTQTAVMN 145 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ HGL G+V +TL A+ Sbjct: 146 FQRDHGLAVDGIVGPATLNAL 166 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V+ L++ L G + F + + +V FQ H L G Sbjct: 24 ALGDKLLKEGMTDPDVKELQDVLRQKGIFS--ATSTGYFGSITKDSVLSFQRSHSLTADG 81 Query: 156 MVDSSTLEAMNVP 168 +V S+T +A+ Sbjct: 82 IVGSNTYQALIGN 94 >gi|238921306|ref|YP_002934821.1| hypothetical protein NT01EI_3450 [Edwardsiella ictaluri 93-146] gi|238870875|gb|ACR70586.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 150 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + G N M + H T F +R + GCVR+R+ Sbjct: 5 YAANGQYLPAVFPAGPDNPMGLYALYVGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRD 59 Query: 349 IIDLDVWLLKDTPTWSRYHI 368 WL K+ P +R Sbjct: 60 PD--IKWLFKNVPIGTRVQF 77 >gi|283779427|ref|YP_003370182.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula staleyi DSM 6068] gi|283437880|gb|ADB16322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula staleyi DSM 6068] Length = 677 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + P +P + L +G+S V L+ L + + +AVK FQ+ H Sbjct: 296 QQSTTPPVP-KTLRIGSSGDLVAALQRTLNAKNPEASRLTVDGDYGPATAAAVKKFQLEH 354 Query: 150 GLDPSGMVDSSTLEAMN 166 L+ +G +DS T +A+ Sbjct: 355 MLNETGEMDSKTWQALG 371 >gi|329122079|ref|ZP_08250687.1| cell wall lytic enzyme [Dialister micraerophilus DSM 19965] gi|327466886|gb|EGF12402.1| cell wall lytic enzyme [Dialister micraerophilus DSM 19965] Length = 422 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + L +G + L+ L+ +G L + + + E AV LFQ GL +G Sbjct: 20 ISAKTLKIGMKGQEITALQNSLVAAGYLAR--TVDSEYGSTTEKAVSLFQKDKGLTITGE 77 Query: 157 VDSSTLEAMNV 167 D TL+A+ Sbjct: 78 ADEKTLKAIKK 88 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ ++ ++ +L G LD + + E+AVK Q + GL SG +D T+ Sbjct: 185 GDVGKDIENIQTKLQEYGYLD--GDIDGIYGNDTETAVKKLQEKSGLAISGSIDEETMRE 242 Query: 165 M 165 + Sbjct: 243 L 243 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+S V L+ +LI+ G F E+AVKLFQ + L+ +G+ DS ++ Sbjct: 261 IGDSGTDVGELQNKLILHGY--NPGIADGFFGNDTETAVKLFQKDNNLEVTGIADSVVIK 318 Query: 164 AMNVPV 169 + Sbjct: 319 KLKKAP 324 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 16/162 (9%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGIDSDIP-- 68 + + L + +++ K + + + I +S+V + D+ S Sbjct: 10 LIMCLSVSVNISAKTLKIGMKGQEITALQNSLVAAGYLARTVDSEYGSTTEKAVSLFQKD 69 Query: 69 ---IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD 125 I+ E +T KAI ++ R G + + GN + V++ ++ L SG L Sbjct: 70 KGLTITGEADEKTLKAIKKAENKGYRNGGGIVYAK----GNLGIEVEKWQKVLYESGCL- 124 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + + +AV+LFQ + + SG +D TL A+ Sbjct: 125 -NGDVDGIYGTETFNAVELFQKNNDIPVSGAIDEMTLSALEK 165 >gi|313891696|ref|ZP_07825303.1| peptidoglycan binding domain protein [Dialister microaerophilus UPII 345-E] gi|313119974|gb|EFR43159.1| peptidoglycan binding domain protein [Dialister microaerophilus UPII 345-E] Length = 422 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + L +G + L+ L+ +G L + + + E AV LFQ GL +G Sbjct: 20 ISAKTLKIGMKGQEITALQNSLVAAGYLAR--TVDSEYGSTTEKAVSLFQKDKGLTITGE 77 Query: 157 VDSSTLEAMNV 167 D TL+A+ Sbjct: 78 ADEKTLKAIKK 88 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 16/162 (9%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-----DNFLARVDMGIDSDIP-- 68 + + L + +++ K + + + I +S+V + D+ S Sbjct: 10 LIMCLSVSVNISAKTLKIGMKGQEITALQNSLVAAGYLARTVDSEYGSTTEKAVSLFQKD 69 Query: 69 ---IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD 125 I+ E +T KAI ++ R G + + GN + V++ ++ L SG L Sbjct: 70 KGLTITGEADEKTLKAIKKAENKGYRNGGGIVYAK----GNLGIEVEKCQKVLYESGYL- 124 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + + +AVKLFQ + + SG +D TL A+ Sbjct: 125 -NGDVDGIYGTETFNAVKLFQKNNDIPVSGAIDEMTLSALEK 165 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ ++ ++ +L G LD + + + E+AVK Q + GL SG +D T+ Sbjct: 185 GDVGKDIENIQTKLQEYGYLD--GDIDGIYGSDTENAVKKLQEKSGLAISGSIDEETMRE 242 Query: 165 M 165 + Sbjct: 243 L 243 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+S V L+ +LI+ G F E+AVKLFQ + L+ +G+ DS ++ Sbjct: 261 IGDSGTDVGELQNKLILHGY--NPGIADGFFGNDTETAVKLFQKDNNLEVTGIADSVVIK 318 Query: 164 AMNVPV 169 + Sbjct: 319 NLKKAP 324 >gi|319653745|ref|ZP_08007842.1| hypothetical protein HMPREF1013_04460 [Bacillus sp. 2_A_57_CT2] gi|317394588|gb|EFV75329.1| hypothetical protein HMPREF1013_04460 [Bacillus sp. 2_A_57_CT2] Length = 266 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ V +++ +L +G + + L + SAVK FQ + GL G+ Sbjct: 97 KVLRYGDIGKQVIQIQYQLKQTGHYESN--LDGIYGNGTVSAVKSFQKQQGLTADGIAGP 154 Query: 160 STLEAMNVPVD 170 T ++ Sbjct: 155 RTRAELDRKAK 165 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L G+S V L++ L+ G + + + AVK FQ + L G Sbjct: 28 ALGDRTLANGSSGSDVAELQDYLMTKGVFP-YHTSTGYYGSITVEAVKDFQRKRHLKVDG 86 Query: 156 MVDSSTLEAMNV 167 + S T A+ V Sbjct: 87 IAGSQTSHALKV 98 >gi|290967813|ref|ZP_06559366.1| 3D domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290782172|gb|EFD94747.1| 3D domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 170 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S +VQRL+ LI +G L G F A AV FQ GLD G+V + TL A Sbjct: 4 GMSGAAVQRLQYMLIDAGYLS--DGADGVFGAATRDAVTRFQAAKGLDADGVVGTRTLTA 61 Query: 165 MNVPVDLRIRQLQVNLMRIK 184 + + N+ + Sbjct: 62 LAETGKKKTNNSAQNIWGKR 81 >gi|254416303|ref|ZP_05030057.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176985|gb|EDX71995.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 320 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ V +++RL G D F AV+ FQ GL P G+V Sbjct: 59 AQTLQPGSRGSQVIEIQQRLRELGYFDQQPT--GYFGPITTEAVQQFQRSQGLIPDGIVG 116 Query: 159 SST 161 T Sbjct: 117 QRT 119 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V L+ +L +G + + ++AV+ FQ + L P G+ + Sbjct: 182 RELRPGDRGQEVFELQLKLRQAGF--DPGRVDGIYGFQTQNAVEQFQEANNLFPDGVANQ 239 Query: 160 STLEAMN 166 TL+A+ Sbjct: 240 DTLQALG 246 >gi|297545285|ref|YP_003677587.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843060|gb|ADH61576.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 333 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ S V L+ RL + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDRSPFVVSLQARLKSL--YFDPGPIDGIFGRKTEEAVKAYQQSRGLSVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|296392456|ref|YP_003657340.1| cell wall hydrolase/autolysin [Segniliparus rotundus DSM 44985] gi|296179603|gb|ADG96509.1| cell wall hydrolase/autolysin [Segniliparus rotundus DSM 44985] Length = 402 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 22/130 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSV---------------------AFDAYVES 140 L G+ V +R L G L S G FDA ++ Sbjct: 4 LRRGDIGPEVVAVRAILEELGFLRSSNGSPDQGAAHDGLTPDASGQEARVEALFDAELDL 63 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV+ FQ G+ G++ +T R+ + ++ + ++ Sbjct: 64 AVRAFQQHRGMLVDGIIGPAT-SQCLREASFRLGARVTSYQPSAPMVGDDVADLQARLHD 122 Query: 201 PAASLEAVEN 210 + V+ Sbjct: 123 LGFYMGLVDG 132 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + F + + +Q GL P G+ +TL ++ Sbjct: 108 MVGDDVADLQARLHDLGFYM--GLVDGYFGPKTHNGLMSYQREFGLTPDGICGPATLRSL 165 Query: 166 N 166 N Sbjct: 166 N 166 >gi|187939515|gb|ACD38663.1| putative peptidoglycan-binding domain-containing protein [Pseudomonas aeruginosa] Length = 268 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V++L+ RL + F A E AV+ FQ HGL G+ Sbjct: 2 TLRYGDRSQEVRQLQRRLNTW--AGANLYEDGHFGAATEDAVRAFQRSHGLVADGIAGPK 59 Query: 161 TLEAMN 166 TL A+ Sbjct: 60 TLAALG 65 >gi|330898219|gb|EGH29638.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. japonica str. M301072PT] Length = 162 Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 6/68 (8%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--R 347 + + G N + K +H + + F +R + GC R+ Sbjct: 1 AADGDPLPDVVPAGPDNPLGPFKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNN 56 Query: 348 NIIDLDVW 355 N+++L Sbjct: 57 NVLELADM 64 >gi|312877867|ref|ZP_07737814.1| spore cortex-lytic enzyme [Caldicellulosiruptor lactoaceticus 6A] gi|311795371|gb|EFR11753.1| spore cortex-lytic enzyme [Caldicellulosiruptor lactoaceticus 6A] Length = 225 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V +++RL G D + + AV+ FQ ++GL G+ S TL A Sbjct: 41 GSTGPEVIEIQKRLKQWGYYD--GPIDGIYGYKTYMAVRYFQAKNGLKVDGIAGSETLRA 98 Query: 165 MNVPVDLR 172 + + R Sbjct: 99 LGIVTTTR 106 >gi|126649562|ref|ZP_01721803.1| hypothetical protein BB14905_06478 [Bacillus sp. B14905] gi|126593887|gb|EAZ87810.1| hypothetical protein BB14905_06478 [Bacillus sp. B14905] Length = 143 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLK 358 DP + + + +H T +P + + GC+R++N + +L + Sbjct: 80 DPNPGGPFGTMWMSLSKEH-YGIHGTNDPSSIGH---AVSHGCIRMQNQDVEELASIVPI 135 Query: 359 DTP 361 T Sbjct: 136 GTE 138 >gi|320007102|gb|ADW01952.1| Peptidoglycan-binding domain 1 protein [Streptomyces flavogriseus ATCC 33331] Length = 126 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S VQ L+ L+ G S G+ F A ESAV+ FQ G+ G+V +T Sbjct: 61 GDSGAKVQELQALLVFKGFSVGSSGVDGQFGAGTESAVRRFQTSRGISSDGVVGPTTWHY 120 Query: 165 MNVP 168 + P Sbjct: 121 LRTP 124 >gi|54027638|ref|YP_121880.1| putative N-acetylmuramoyl-L-alanine amidase [Nocardia farcinica IFM 10152] gi|54019146|dbj|BAD60516.1| putative N-acetylmuramoyl-L-alanine amidase [Nocardia farcinica IFM 10152] Length = 397 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 13/130 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA------------FDAYVESAVKLFQMRH 149 L G++ +V +R L G L G + FD +++SAV+ FQ Sbjct: 4 LRHGDTGPAVAEVRSTLASLGFLHAHAGSDESQSPEYWKDTEASFDHHLDSAVRAFQQHR 63 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G+V +T A+ R+ + L + + + V+ Sbjct: 64 GLLVDGVVGPATYRALKE-ASYRLGARTLIYQLSAPLYGDDVATLQRKLQDLGFYVHRVD 122 Query: 210 NGKVGLRSTV 219 Sbjct: 123 GYFGPHTHDA 132 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 28/159 (17%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET-------IAQTEKAIA 83 + + E ++ + F + A D S P K+T + +A Sbjct: 4 LRHGDTGPAVAEVRSTLASLGFLHAHAGSDE---SQSPEYWKDTEASFDHHLDSAVRAFQ 60 Query: 84 FYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPS 127 ++ +L G + L LG V L+ +L G Sbjct: 61 QHRGLLVDGVVGPATYRALKEASYRLGARTLIYQLSAPLYGDDVATLQRKLQDLGFYVHR 120 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + F + A+ FQ GL G+ TL ++ Sbjct: 121 --VDGYFGPHTHDALTAFQREIGLSADGICGPDTLRSLE 157 >gi|330000830|ref|ZP_08303844.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] gi|328537852|gb|EGF64042.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] Length = 313 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 44/172 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 100 IVINVAEMRLYYYPPQGNSVEVLPIGIGQAGRETPRNWVTAVERKQEGPTW-VPTANTRR 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E PG N M I Sbjct: 159 E----------------------------------YAKEGKTLPAMVPPGPDNPMGLYAI 184 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 H T F +R + GC+R+RN D +L + P +R Sbjct: 185 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKFLFDNVPVGTR 229 >gi|41410439|ref|NP_963275.1| CwlM [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465835|ref|YP_884413.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium avium 104] gi|41399273|gb|AAS06891.1| CwlM [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167122|gb|ABK68019.1| putative N-acetylmuramoyl-L-alanine amidase [Mycobacterium avium 104] Length = 406 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHG 150 L G+ S +V +R L G L + FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 18/155 (11%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + + E ++ + + + Q +A ++ Sbjct: 8 YGDALRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHR 67 Query: 87 DILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGL 130 +L G + L LG V L+ RL G + + Sbjct: 68 GLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFY--TGLV 125 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 126 DGYFGLQTHNALMSYQREYGLSADGICGPETLRSL 160 >gi|328954552|ref|YP_004371886.1| Peptidoglycan-binding domain 1 protein [Desulfobacca acetoxidans DSM 11109] gi|328454876|gb|AEB10705.1| Peptidoglycan-binding domain 1 protein [Desulfobacca acetoxidans DSM 11109] Length = 524 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 12/179 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY--HSIVNDRFDNFLARVDMGIDSDIPIISKETIA- 76 + L L K L + + + ++ FD+ + +++ + Sbjct: 179 VAQALQLGAKGSEVLELQKRLKDLRFDPGRLDGVFDSGTEAAVVAFQKSEDLLADGIVGP 238 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +T A+ + + G L +G S V+ L+++L G L F Sbjct: 239 KTLAALELAETEEAAG-----ETLLLQVGASGPHVEALQKQLAALGF--DPGPLDGVFGE 291 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEA--MNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 E AV FQ LD G+ T+ A + P + L + L+ + Sbjct: 292 KTERAVLAFQESRELDADGIAGPQTMAALSLQAPPIQPAKALGLAPDVTVDLVAEMFPD 350 >gi|299535205|ref|ZP_07048529.1| spore protein ykuD-like protein [Lysinibacillus fusiformis ZC1] gi|298729326|gb|EFI69877.1| spore protein ykuD-like protein [Lysinibacillus fusiformis ZC1] Length = 164 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLK 358 P + + + +H T +P + + GC+R++N + +L + Sbjct: 101 APNPGGPFGTMWMSLSKEH-YGIHGTNDPSSIGH---AVSHGCIRMQNRDVEELASIVPI 156 Query: 359 DTP 361 T Sbjct: 157 GTE 159 >gi|289668377|ref|ZP_06489452.1| hypothetical protein XcampmN_07730 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 616 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 11/164 (6%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L + S + + S LD + E H+ + + + + +++ A T Sbjct: 344 QLKISQSRGGEGVELSSLDSYL-ERKHAKGVKLYASDPLSEARDLLQERSQTKQQSHAAT 402 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFD 135 E + G L V+ L++ L G D + Sbjct: 403 EHKPSQAYAAADASG-------VLRENVCGADVRTLQQTLQQLGYKDAHGHELKPDGVYG 455 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 AVK FQ HGL G+V T A+ + + N Sbjct: 456 QRTSEAVKAFQRAHGLQDDGVVGRDTQAALRQAEKTPLLSEKTN 499 >gi|254777652|ref|ZP_05219168.1| putative N-acetylmuramoyl-L-alanine amidase [Mycobacterium avium subsp. avium ATCC 25291] Length = 406 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHG 150 L G+ S +V +R L G L + FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 18/155 (11%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + + E ++ + + + Q +A ++ Sbjct: 8 YGDALRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHR 67 Query: 87 DILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGL 130 +L G + L LG V L+ RL G + + Sbjct: 68 GLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFY--TGLV 125 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 126 DGYFGLQTHNALMSYQREYGLSADGICGPETLRSL 160 >gi|15808975|gb|AAL08577.1|AF418548_3 N-acetylmuramoyl-l-alanine amidase [Mycobacterium avium subsp. paratuberculosis] Length = 406 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHG 150 L G+ S +V +R L G L + FDA ++ AV+ FQ G Sbjct: 9 GDALRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGIVGEATYRALK 84 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 43/155 (27%), Gaps = 18/155 (11%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + + E ++ + + + Q +A ++ Sbjct: 8 YGDALRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHR 67 Query: 87 DILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGL 130 +L G + L LG V L+ RL G + + Sbjct: 68 GLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFY--TGLV 125 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 126 DGYFGLQTHNALMSYQREYGLSADGICGPETLRSL 160 >gi|886316|gb|AAB53132.1| N-acetymuramyl-L-alanine amidase [Mycobacterium leprae] Length = 205 Score = 67.0 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHG 150 L G+ + +V +R L G L FD ++ AV+ FQ G Sbjct: 9 GDTLRCGDRNAAVTEIRSALAALGLLHSPGDDLTTSKYIALDLFDPQLDDAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGVVGEATHRALK 84 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 18/154 (11%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + + + E ++ + + + +A ++ Sbjct: 9 GDTLRCGDRNAAVTEIRSALAALGLLHSPGDDLTTSKYIALDLFDPQLDDAVRAFQQHRG 68 Query: 88 ILSRG-----GWPELPIRPLHLGN-----------SSVSVQRLRERLIISGDLDPSKGLS 131 +L G L LG S V L+ RL G + + Sbjct: 69 LLVDGVVGEATHRALKEASYRLGARTLYHRFGAPLSGDDVATLQARLQDLGFY--TGMVD 126 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 127 GHFGLQTHNALISYQREYGLTADGICGPETLRSL 160 >gi|284993429|ref|YP_003411984.1| cell wall hydrolase/autolysin [Geodermatophilus obscurus DSM 43160] gi|284066675|gb|ADB77613.1| cell wall hydrolase/autolysin [Geodermatophilus obscurus DSM 43160] Length = 383 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 6/88 (6%) Query: 83 AFYQDILSRG---GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 Y+ + G L P+ V L++RL G + + F E Sbjct: 74 ETYRALSEARWSLGDRLLHHDPVRP-MRGDDVTNLQDRLHELGY--DAGPVDGVFGPETE 130 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + ++ FQ +GL G +TL A+ Sbjct: 131 AGLRAFQRDYGLTSDGTCGPATLRALRQ 158 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA------FDAYVESAVKLFQMRHGLDP 153 +PL G+ +V + L L + A +D E AV+ FQ GL Sbjct: 8 QPLGPGDRGHAVADVHAALRALTLLPAAGSAEEASLDEAAYDPATELAVRHFQQVRGLTV 67 Query: 154 SGMVDSSTLEAMN 166 G V T A++ Sbjct: 68 DGRVGEETYRALS 80 >gi|52081895|ref|YP_080686.1| N-acetylmuramoyl-L-alanine amidase [Bacillus licheniformis ATCC 14580] gi|52787285|ref|YP_093114.1| BlyA [Bacillus licheniformis ATCC 14580] gi|52005106|gb|AAU25048.1| N-acetylmuramoyl-L-alanine amidase [Bacillus licheniformis ATCC 14580] gi|52349787|gb|AAU42421.1| BlyA [Bacillus licheniformis ATCC 14580] Length = 359 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++RLI +G P G ++ AVK Q + G+ G+ +T Sbjct: 195 LKKGASGSQVKALQKRLIAAGFSLPKYGADGSYGNETVQAVKALQKKAGIAVDGIYGPAT 254 Query: 162 LEAMNV 167 +A+ Sbjct: 255 EKALAA 260 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP +V +++E L + G+ + +AVK FQ+ Sbjct: 278 TLPSGIYKVKSPMMKGTAVWQIQEALAALYFYPDKEAKNNGIDGYYGPKTANAVKRFQLM 337 Query: 149 HGLDPSGMVDSSTLEAMNV 167 HGL G+ T + Sbjct: 338 HGLSADGIYGPKTKAKIEA 356 >gi|284045118|ref|YP_003395458.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283949339|gb|ADB52083.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 345 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 47/192 (24%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI--PAASLEAVENGKVGLRSTVI 220 A+ D R +++ ++R K Q V++ + A L +N ++ TV Sbjct: 184 RALRRTDDARTVKVRAAVVRPKVTTAQLAKQYPVVITVDRAAFRLSLWKNLRLAKSYTVA 243 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 +G++ TP I +P W +P S D+ G Sbjct: 244 IGQIGLDTPAGLYEIQNKAVDPVWSVPNSAWAGDLA---------------------GTT 282 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 V PG N + + + + + +H T + Sbjct: 283 V-------------------PPGPSNPIKARWLGIF--DGAGIHGTDAVYSLGT---AAS 318 Query: 341 SGCVRVRNIIDL 352 GCVR+ + Sbjct: 319 HGCVRMAIPDVI 330 >gi|261253884|ref|ZP_05946457.1| general secretion pathway protein A [Vibrio orientalis CIP 102891] gi|260937275|gb|EEX93264.1| general secretion pathway protein A [Vibrio orientalis CIP 102891] Length = 540 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 11/165 (6%) Query: 26 LVEKPIHASVLDEIINESY----HSIVNDR--FDNFLARVDMGIDSDIPIISKETIAQTE 79 L + + LDE++ + ++++ F + ++ I + + Sbjct: 380 LFRCQLDQASLDELVQANRPVLLSLQIDEQPRFAILYSVSGEQVELLI---GSQLVTFDR 436 Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + +A R W L G S + +L + L L + +S FD+ V+ Sbjct: 437 QWLASIWQGQYRHIWQSYWSETLKQGMSGEEIAQLDKALSQV--LGEPESVSEYFDSDVK 494 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 V+LFQ GL G+ TL + L+ ++ Sbjct: 495 RKVELFQRWQGLSVDGIAGKKTLRLLEELSQHEAPTLERLEEKLD 539 >gi|320528988|ref|ZP_08030080.1| NlpC/P60 family protein [Selenomonas artemidis F0399] gi|320138618|gb|EFW30508.1| NlpC/P60 family protein [Selenomonas artemidis F0399] Length = 229 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+ V ++ +L G F AVK FQ HGL GMV Sbjct: 31 SAESFQIGDQGTDVAEIQGQLSSVGY---DVVADGDFGPATAEAVKEFQAAHGLAVDGMV 87 Query: 158 DSSTLEAM 165 ST EA+ Sbjct: 88 GPSTYEAL 95 >gi|313895511|ref|ZP_07829067.1| NlpC/P60 family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975637|gb|EFR41096.1| NlpC/P60 family protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 220 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+ V ++ +L G F AVK FQ HGL GMV Sbjct: 22 SAESFQIGDQGTDVAEIQGQLSSVGY---DVVADGDFGPATAEAVKEFQAAHGLAVDGMV 78 Query: 158 DSSTLEAM 165 ST EA+ Sbjct: 79 GPSTYEAL 86 >gi|17313229|ref|NP_490609.1| hypothetical protein phiCTXp12 [Pseudomonas phage phiCTX] gi|4063783|dbj|BAA36237.1| unnamed protein product [Pseudomonas phage phiCTX] Length = 268 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V +L+ RL + F A E AV+ FQ HGL G+ Sbjct: 2 TLRYGDRSQEVLQLQRRLNTW--AGANLYEDGHFGAATEDAVRAFQRSHGLVADGIAGPK 59 Query: 161 TLEAMN 166 TL A+ Sbjct: 60 TLAALG 65 >gi|323704291|ref|ZP_08115870.1| ErfK/YbiS/YcfS/YnhG family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536357|gb|EGB26129.1| ErfK/YbiS/YcfS/YnhG family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 387 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 57/221 (25%), Gaps = 81/221 (36%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNIP+ ++ V L + VG++ +P+ RI NP WV P Sbjct: 31 MTVNIPSRTIYFVSQNMSKL-YPIAVGKIISTSPLGTYRIINKQVNPKWVSP-------- 81 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 WN G N + + F Sbjct: 82 --------------------------------WNGE-------VVPSGPDNPLGYRWMGF 102 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 YS H P +SGC+R+ + ++V Sbjct: 103 YSDYGI--HGNNMPSSIGT---LASSGCIRMYEA--------------DVEELFDMVSYG 143 Query: 376 KTTPVKLATEVPVHFVYISAWSPKD---SIIQF-RDDIYGL 412 V+ VY + + + F D Y Sbjct: 144 DI----------VNVVYQTIFPKTSPTGGMALFVYPDFYKK 174 >gi|148807399|gb|ABR13472.1| hypothetical protein [Pseudomonas aeruginosa] Length = 268 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V++L+ RL + F A E AV+ FQ HGL G+ Sbjct: 2 TLRYGDRSQEVRQLQRRLNTW--AGANLYEDGHFGAATEDAVRAFQRSHGLVADGIAGPK 59 Query: 161 TLEAMN 166 TL A+ Sbjct: 60 TLSALG 65 >gi|297568445|ref|YP_003689789.1| Peptidoglycan-binding domain 1 protein [Desulfurivibrio alkaliphilus AHT2] gi|296924360|gb|ADH85170.1| Peptidoglycan-binding domain 1 protein [Desulfurivibrio alkaliphilus AHT2] Length = 442 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 14/89 (15%) Query: 94 WPEL-PIRPLHLGNSSVSVQRLRERLIIS-----GDLDPSKGL--------SVAFDAYVE 139 WP L P L G+ V++LR L G + + FDA + Sbjct: 332 WPPLLPGELLQEGDQGPEVRQLRFLLQQLAAELSGHEEERAAATLAATASGADYFDAELA 391 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V FQ HGL+ G+V T + Sbjct: 392 ELVGNFQAAHGLEADGIVGPQTWRQLRRS 420 >gi|251796689|ref|YP_003011420.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] gi|247544315|gb|ACT01334.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] Length = 221 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 7/97 (7%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ RL G D + ++ + E AV+ FQ +GL G+ + Sbjct: 36 TLSYGSYGPDVPDLQFRLKTLGYFDNTA-ITTFYGKMTEEAVRKFQADYGLKSDGVAEEK 94 Query: 161 TLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 T + V + + L + + + G Y Sbjct: 95 TWTQLKKVSANQKELDLL-----ARIIYAEARGESYK 126 >gi|119488069|ref|ZP_01621513.1| Peptidoglycan-binding domain 1 [Lyngbya sp. PCC 8106] gi|119455358|gb|EAW36497.1| Peptidoglycan-binding domain 1 [Lyngbya sp. PCC 8106] Length = 206 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG +V L+ERL G L F + ++AV Q ++ L P G+V S Sbjct: 142 VLKLGMRGEAVVGLQERLRAKGFLKGQA--DGVFGSQTQAAVIAAQEQYKLKPDGVVGSQ 199 Query: 161 TL 162 T Sbjct: 200 TW 201 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L L G+ V L+ L + G + + AV FQ L +G+ Sbjct: 37 LTRPTLQTGSQGTEVFELQAALKLLGYYTGE--VDGVYAESTAEAVSQFQKAANLPVTGV 94 Query: 157 VDSSTLEAMNVPVD 170 +S+T + + P + Sbjct: 95 TNSATWDRLFPPEE 108 >gi|312135357|ref|YP_004002695.1| spore cortex-lytic enzyme [Caldicellulosiruptor owensensis OL] gi|311775408|gb|ADQ04895.1| spore cortex-lytic enzyme [Caldicellulosiruptor owensensis OL] Length = 226 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V ++ RL G D + + AV+ FQ ++GL G+ S TL A Sbjct: 41 GSTGPEVIEIQRRLKQWGYYD--GPIDGIYGYKTYMAVRYFQAKNGLKVDGIAGSETLRA 98 Query: 165 MNV 167 + + Sbjct: 99 LGI 101 >gi|170760217|ref|YP_001786763.1| zinc carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407206|gb|ACA55617.1| zinc carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 423 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMNV 167 E +N Sbjct: 62 YELLNK 67 >gi|284989789|ref|YP_003408343.1| peptidoglycan-binding domain 1 protein [Geodermatophilus obscurus DSM 43160] gi|284063034|gb|ADB73972.1| Peptidoglycan-binding domain 1 protein [Geodermatophilus obscurus DSM 43160] Length = 234 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V + RL+ + LD + F E A + FQ HGL G+V T Sbjct: 167 LRRGDRGAAVATWQWRLVQA--LDRQVDVDEVFGPMTEQATRDFQSAHGLAVDGVVGPRT 224 Query: 162 LEAMNV 167 AM Sbjct: 225 RAAMVR 230 >gi|161502822|ref|YP_001569934.1| hypothetical protein SARI_00873 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864169|gb|ABX20792.1| hypothetical protein SARI_00873 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 309 Score = 67.0 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 53/175 (30%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPEGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|289579097|ref|YP_003477724.1| peptidoglycan-binding protein [Thermoanaerobacter italicus Ab9] gi|289528810|gb|ADD03162.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter italicus Ab9] Length = 336 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ S V L+ RL + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDRSPFVVNLQARLKSL--YFDPGPIDGIFGRKTEEAVKAYQQSRGLSVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|21244359|ref|NP_643941.1| hypothetical protein XAC3634 [Xanthomonas axonopodis pv. citri str. 306] gi|21110016|gb|AAM38477.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 306 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 L V+ L++ L G D + A+ AVK FQ HGL Sbjct: 105 APSVLRENARGAEVRTLQQTLQQLGYKDAAGNELKADGAYGQRTSDAVKAFQRAHGLQDD 164 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V T A+ + + N Sbjct: 165 GVVGRDTQAALKQAEKTPLLSEKTN 189 >gi|153939521|ref|YP_001390735.1| zinc carboxypeptidase family protein [Clostridium botulinum F str. Langeland] gi|152935417|gb|ABS40915.1| zinc carboxypeptidase family protein [Clostridium botulinum F str. Langeland] gi|295318808|gb|ADF99185.1| zinc carboxypeptidase family protein [Clostridium botulinum F str. 230613] Length = 423 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMNV 167 E +N Sbjct: 62 YELLNK 67 >gi|113955394|ref|YP_730733.1| protein erfK/srfK precursor [Synechococcus sp. CC9311] gi|113882745|gb|ABI47703.1| Protein erfK/srfK precursor [Synechococcus sp. CC9311] Length = 238 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 65/240 (27%), Gaps = 75/240 (31%) Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL--EQKMGLRYVLVNIPAA 203 + R G + G + E I L + L L + R L + Sbjct: 43 EERQG-EIKGEILVEAPEEAPKRKSDPIPPLAIPLSDTASLARIPDDLMERKGLQLVLDR 101 Query: 204 ---SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 L +++G++ R VG +TP R+ + +P W P S Sbjct: 102 KHHQLLVLKDGQMTRRFPAAVGTTGWETPAGRFRVFEKVKDPVWTHPVS----------- 150 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY---S 317 G V E K N + S I FY + Sbjct: 151 -----------------GDLVDAES------------------KGNPLGSRWIGFYRDCN 175 Query: 318 RNNT---------------YMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 + H TP R + GCVR+ N+ ++ + T Sbjct: 176 GRSGWDGEQYLDINGCTVAGFHGTPYRWTVG---RAVSHGCVRLYEENVQEVFDLVRVGT 232 >gi|168180045|ref|ZP_02614709.1| zinc carboxypeptidase family protein [Clostridium botulinum NCTC 2916] gi|226948652|ref|YP_002803743.1| zinc carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] gi|182669125|gb|EDT81101.1| zinc carboxypeptidase family protein [Clostridium botulinum NCTC 2916] gi|226842575|gb|ACO85241.1| zinc carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] Length = 423 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMNV 167 E +N Sbjct: 62 YELLNK 67 >gi|317128889|ref|YP_004095171.1| NLP/P60 protein [Bacillus cellulosilyticus DSM 2522] gi|315473837|gb|ADU30440.1| NLP/P60 protein [Bacillus cellulosilyticus DSM 2522] Length = 470 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L +G+ V+ ++E L G + + E AV+ +Q HGL+ Sbjct: 135 WPV--DTVLSIGDHGPKVKIIQEHLSEIGYYVQE--IDGLYGEKTEKAVERYQKEHGLNI 190 Query: 154 SGMVDSSTL 162 +G VD T+ Sbjct: 191 TGKVDHETI 199 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ ++ L+E L +G + + + + + AV++ Q + L G+ + Sbjct: 260 GDEHEDIKELQELLNKAGYY--NGTIDGIYGSNTQQAVRMLQRDNDLMVDGLAGDQVFDF 317 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 + ++++ NL + + + + + S+E Sbjct: 318 LKSSD---LKKIADNLEKSQVESTKNENNSKETIEKSSNSME 356 >gi|148379350|ref|YP_001253891.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. ATCC 3502] gi|153930920|ref|YP_001383725.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|153935817|ref|YP_001387274.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. Hall] gi|148288834|emb|CAL82918.1| putative gamma-D-glutamyl-L-diamino acid endopeptidase [Clostridium botulinum A str. ATCC 3502] gi|152926964|gb|ABS32464.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|152931731|gb|ABS37230.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. Hall] gi|322805689|emb|CBZ03254.1| gamma-D-glutamyl-L-diamino acid endopeptidase I [Clostridium botulinum H04402 065] Length = 423 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMNV 167 E +N Sbjct: 62 YELLNK 67 >gi|78222403|ref|YP_384150.1| peptidoglycan binding domain-containing protein [Geobacter metallireducens GS-15] gi|78193658|gb|ABB31425.1| Peptidoglycan-binding domain 1 [Geobacter metallireducens GS-15] Length = 321 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G++ V+ ++ RL G F ESAVK FQ ++GLD G+V Sbjct: 2 TNAYRRGSTGAEVKTIQTRLAGLGLYS--GDTDGIFGGGTESAVKNFQRKNGLDVDGIVG 59 Query: 159 SSTLEAM 165 T + + Sbjct: 60 EDTWKKL 66 >gi|289663317|ref|ZP_06484898.1| hypothetical protein XcampvN_09602 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 255 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 3/111 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSG 155 L G SV++L+ +L G F + AV+ FQ HGL G Sbjct: 31 DGKLEQGERGESVKQLQGQLAQLGYHGRDGKPLHPDGDFGGNTKHAVEQFQREHGLQVDG 90 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 +V T A+ + + P ++ Sbjct: 91 VVGRQTQAALGQALSQYTAKQAEQTDATAIPSPAPSSPLLSDPRHPDNAMY 141 >gi|319644741|ref|ZP_07998974.1| N-acetylmuramoyl-L-alanine amidase cwlL [Bacillus sp. BT1B_CT2] gi|317392550|gb|EFV73344.1| N-acetylmuramoyl-L-alanine amidase cwlL [Bacillus sp. BT1B_CT2] Length = 359 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S V+ L++RLI +G P G ++ AVK Q G+ G+ +T Sbjct: 195 LKKGSSGSKVRALQKRLIAAGFSLPKYGADGSYGDETVQAVKALQKNAGIAVDGIYGPAT 254 Query: 162 LEAMNV 167 +A+ Sbjct: 255 EKALAA 260 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 25/161 (15%) Query: 31 IHASVLDEIINESYHSIVNDRFD-----NFLARVDMGIDSDIPIISKETIA-------QT 78 + + ++ F + D + + + IA T Sbjct: 195 LKKGSSGSKVRALQKRLIAAGFSLPKYGADGSYGDETVQAVKALQKNAGIAVDGIYGPAT 254 Query: 79 EKAIAFYQDILSRGGWP------ELPIRPLH---LGNSSVSVQRLRERLIISGDLD---- 125 EKA+A + + LP V++++E L Sbjct: 255 EKALAAIEAKKKKPSSSGKKSSYPLPSGIYKVKSPLMKGTGVRQIQEALAALYFYPDKGA 314 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + G+ + +AVK FQ+ +GL G+ T + Sbjct: 315 KNNGIDGYYGPKTANAVKRFQLMYGLSADGIYGPKTKAKLE 355 >gi|253573824|ref|ZP_04851167.1| spore cortex-lytic enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251847352|gb|EES75357.1| spore cortex-lytic enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 240 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L LG++S V L+ RL G ++ L+ + + AV+ FQ R+GL G+ Sbjct: 53 ASGTLKLGSTSGDVWDLQYRLKALGIF--NEQLTGYYGTKTQQAVRTFQSRYGLQVDGVA 110 Query: 158 DSSTLEAMNV 167 T A+ Sbjct: 111 GPQTWAALRK 120 >gi|158321097|ref|YP_001513604.1| spore cortex-lytic enzyme SleB [Alkaliphilus oremlandii OhILAs] gi|158141296|gb|ABW19608.1| Spore cortex-lytic enzyme SleB [Alkaliphilus oremlandii OhILAs] Length = 228 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+S V+ + RL G L G+ F AV FQ +GL P G++ Sbjct: 28 GQTLAWGSSGEDVRIAQSRLKQWGYL--EGGVDGVFGKTTYDAVIKFQKANGLTPDGVIG 85 Query: 159 SSTLEAMNVP 168 + T A+ + Sbjct: 86 AQTRVALGMS 95 >gi|146296750|ref|YP_001180521.1| cell wall hydrolase, SleB [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410326|gb|ABP67330.1| cell wall hydrolase, SleB [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 226 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V ++ RL G D + + AV+ FQ ++GL G+ S TL A Sbjct: 41 GSTGSEVIEIQRRLKQWGYYD--GPIDGIYGYKTYMAVRYFQAKNGLKVDGIAGSETLRA 98 Query: 165 MNVPVDLRIRQLQVNLM 181 + + NL Sbjct: 99 LGIVTTTSRSSYNSNLN 115 >gi|238926949|ref|ZP_04658709.1| NLP/P60 protein [Selenomonas flueggei ATCC 43531] gi|238885183|gb|EEQ48821.1| NLP/P60 protein [Selenomonas flueggei ATCC 43531] Length = 226 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+ V ++ +L G F AVK FQ HGLD G+V Sbjct: 28 SAESFQIGDQGTDVAEIQGQLSNYGY---DVAADGDFGPATAEAVKEFQAAHGLDADGLV 84 Query: 158 DSSTLEAM 165 +T EA+ Sbjct: 85 GPATYEAL 92 >gi|326204425|ref|ZP_08194283.1| NLP/P60 protein [Clostridium papyrosolvens DSM 2782] gi|325985457|gb|EGD46295.1| NLP/P60 protein [Clostridium papyrosolvens DSM 2782] Length = 508 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 15/198 (7%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L I V D + +++ +D + + T K Sbjct: 62 LQGDVIKLGVKDSTVTVIQKKLMD----LDYLEIDEPTEEFGESLKLATELFQRKNKLPI 117 Query: 86 QDILSRGGWPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + + L + LG VQ+L+ERL G + + F + Sbjct: 118 TGEVDAKTYQLLLSDDAKAYTVSLGAEGTDVQQLQERLYELGYM---GKATGYFGTDTDI 174 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ R+GL G V T E + + + + + +Q++ L Sbjct: 175 AVKDFQKRNGLFDDGNVGKQTREVLYSAKAVPMSFYLGDENKEILQYKQRLYELGYLTAK 234 Query: 201 PAASLEAVENGKVGLRST 218 P+ +N V Sbjct: 235 PSGK---YDNDTVQAVKR 249 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+ + + + ++RL G L + S +D AVK FQ +GL G + T + Sbjct: 211 LGDENKEILQYKQRLYELGYL--TAKPSGKYDNDTVQAVKRFQENNGLIADGFIGPVTKD 268 Query: 164 AMNVP 168 + Sbjct: 269 LLMSS 273 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+S V +++ L G L ++ F + +AV FQ ++GL G + S Sbjct: 279 ALDIGDSGDDVTKVQTYLKKLGYLKS---VTGYFGSDTHNAVLKFQSKNGLGKDGKIGSQ 335 Query: 161 TLEAMNVPVDLRIR 174 T+ + P + Sbjct: 336 TIAKLLSPDAKKWT 349 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 27/234 (11%) Query: 57 ARVDMGIDSDIPIISKETI---AQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSV 111 S ++ A A+ SRG P P + LG +V Sbjct: 21 TDKPEKTVSVSDQTPQQKYSKPATESNALTK----TSRGITPMNPLQGDVIKLGVKDSTV 76 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 ++++L+ L+ + F ++ A +LFQ ++ L +G VD+ T + + + D Sbjct: 77 TVIQKKLMDLDYLEIDEPTEE-FGESLKLATELFQRKNKLPITGEVDAKTYQ-LLLSDDA 134 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 + + + G + L + + + D Q Sbjct: 135 KAYTVSLGAE----------GTDVQQLQERLYELGYMGKATGYFGTDTDIAVKDFQKRNG 184 Query: 232 ------HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 + R + +P S D + Q Q L + GK Sbjct: 185 LFDDGNVGKQTREVLYSAKAVPMSFYLGDENKEILQYKQRLYELGYLTAKPSGK 238 >gi|315646088|ref|ZP_07899208.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus vortex V453] gi|315278287|gb|EFU41603.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus vortex V453] Length = 112 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 7/75 (9%) Query: 289 NSPEPPNFIFR-QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV- 346 P N+ ++P + + + +H T +P R + GC+R+ Sbjct: 36 TQTPPGNYTIVTKEPNPGGPFGAYWLGLSKPH-YGIHGTNDPSSIG---RSVSHGCIRMY 91 Query: 347 -RNIIDLDVWLLKDT 360 +++ L + T Sbjct: 92 NEDVVQLASLVPLHT 106 Score = 36.5 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 M ++V++ L ++ V + VG++ QTP + I NP Sbjct: 1 MPKYRIIVDVGNYQLHLLDGDAVVHTYPIAVGKMATQTPPGNYTIVTKEPNPGG 54 >gi|312793773|ref|YP_004026696.1| spore cortex-lytic enzyme [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180913|gb|ADQ41083.1| spore cortex-lytic enzyme [Caldicellulosiruptor kristjanssonii 177R1B] Length = 225 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V +++RL G D + + AV+ FQ ++GL G+ S TL A Sbjct: 41 GSTGPEVIEIQKRLKQWGYYD--GPIDGIYGYKTYMAVRYFQAKNGLKVDGIAGSETLRA 98 Query: 165 MNV 167 + + Sbjct: 99 LGI 101 >gi|302532519|ref|ZP_07284861.1| peptidoglycan-binding domain 1 protein [Streptomyces sp. C] gi|302441414|gb|EFL13230.1| peptidoglycan-binding domain 1 protein [Streptomyces sp. C] Length = 306 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I+ W L L G S +V L+ L G+ F ++AV+ FQ Sbjct: 69 GIVGAATWAAL-APTLKEGASGPAVSALQGELNAK--AGAGLGVDGKFGDGTKAAVRRFQ 125 Query: 147 MRHGLDPSGMVDSSTLE 163 GL G+V +T + Sbjct: 126 TAAGLTADGVVGPATWK 142 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN V L+ L+ G S F A +AVK FQ H L G+V ++T A Sbjct: 22 GNRGTDVLALQRLLVSKG---QSAPADGVFGASTTAAVKRFQASHKLAADGIVGAATWAA 78 Query: 165 MNVPVDL 171 + + Sbjct: 79 LAPTLKE 85 >gi|196249438|ref|ZP_03148136.1| NLP/P60 protein [Geobacillus sp. G11MC16] gi|196211195|gb|EDY05956.1| NLP/P60 protein [Geobacillus sp. G11MC16] Length = 544 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 37/293 (12%), Positives = 79/293 (26%), Gaps = 31/293 (10%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRF------DNFLARVDMGIDSDIPIISKETIA 76 + + + + + + + + V + Sbjct: 94 AFVPTARTLSVGMRGDDVKVLQQRLKQLGYFKYPEITGYFGTVTEAAVKQF--QQANGLK 151 Query: 77 QTEKA----IAFYQD-ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 T KA I + + + L +G+ V L++ L + G + Sbjct: 152 VTGKADAVTIERLRQAVSKQTTTTSSSPVTLKIGSRGSEVSELQKNLKLLGYFT-YPTAT 210 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + AV+ FQ +GL +G VDS+TL + V + L Sbjct: 211 GYYGTITADAVRRFQKDNGLPATGSVDSTTLGRIADAVKKKTAPPAKENSSSVYLKIGTR 270 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI- 250 G + V L I G T + R + + S+ Sbjct: 271 GEKVKQVQTNLKQLGY-------FTYPEITGYYGTITA---DAVRRFQKDNGLPVTGSVD 320 Query: 251 -----IQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPEPPNFI 297 +D + P +++++ G++V + + + Sbjct: 321 STTFGRIEDAVKKKTASPAKESSSSVYLKTGTRGEKVKQVQTNLKQLGYFTYP 373 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 62/200 (31%), Gaps = 9/200 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G SS V+ L++ L G + F E AV+ FQ L +G+VD +T Sbjct: 31 KVGMSSSKVKELQQLLKEKGFFS-YPQATGYFGPITEEAVRAFQKAANLPVTGVVDDATY 89 Query: 163 EAMNV-PVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIPAASLEAVENGKVGLRSTVI 220 + R + + +K L ++ + I E + Sbjct: 90 AKLRAFVPTARTLSVGMRGDDVKVLQQRLKQLGYFKYPEITGYFGTVTEAAVKQFQQANG 149 Query: 221 V---GRVDRQTPILHSRINRIMFNPYWVIPRSII---QKDMMALLRQDPQYLKDNNIHMI 274 + G+ D T + P ++ + ++ L+++ + L Sbjct: 150 LKVTGKADAVTIERLRQAVSKQTTTTSSSPVTLKIGSRGSEVSELQKNLKLLGYFTYPTA 209 Query: 275 DEKGKEVFVEEVDWNSPEPP 294 + + V + Sbjct: 210 TGYYGTITADAVRRFQKDNG 229 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V++++ L G ++ + AV+ FQ L +G+VDS T Sbjct: 348 LKTGTRGEKVKQVQTNLKQLGYFT-YPEITGYYGTITADAVRRFQKDAKLQANGIVDSQT 406 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 E + Q + + + +L+ Sbjct: 407 YERLIGQAPASKGQASASKLDVMELIAD 434 >gi|15828462|ref|NP_302725.1| hydrolase [Mycobacterium leprae TN] gi|221230939|ref|YP_002504355.1| putative hydrolase [Mycobacterium leprae Br4923] gi|13093892|emb|CAC32236.1| putative hydrolase [Mycobacterium leprae] gi|219934046|emb|CAR72804.1| putative hydrolase [Mycobacterium leprae Br4923] Length = 406 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHG 150 L G+ + +V +R L G L FD +E AV+ FQ G Sbjct: 9 GDTLRCGDRNAAVTEIRSALAALGLLHSPGDDLTTSKYIALDLFDPQLEHAVRAFQQHRG 68 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T A+ Sbjct: 69 LLVDGVVGEATHRALK 84 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 18/154 (11%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + + + E ++ + + + +A ++ Sbjct: 9 GDTLRCGDRNAAVTEIRSALAALGLLHSPGDDLTTSKYIALDLFDPQLEHAVRAFQQHRG 68 Query: 88 ILSRG-----GWPELPIRPLHLGN-----------SSVSVQRLRERLIISGDLDPSKGLS 131 +L G L LG S V L+ RL G + + Sbjct: 69 LLVDGVVGEATHRALKEASYRLGARTLYHRFGAPLSGDDVATLQARLQDLGFY--TGMVD 126 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 127 GHFGLQTHNALISYQREYGLTADGICGPETLRSL 160 >gi|332970134|gb|EGK09128.1| zinc D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 243 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLF 145 + GW R L G+S V+ L+ R+ PS + F E+AVK F Sbjct: 30 VDAYGW----SRTLKQGDSGADVRELQIRVAGWAADSPSRTYVAVDGVFGPGTEAAVKRF 85 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q +GL P G+V +T A+N Sbjct: 86 QRAYGLSPDGVVGPATQSALN 106 >gi|294631054|ref|ZP_06709614.1| peptidoglycan binding domain-containing protein [Streptomyces sp. e14] gi|292834387|gb|EFF92736.1| peptidoglycan binding domain-containing protein [Streptomyces sp. e14] Length = 282 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 5/152 (3%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G+S SV+ L+ RL L + + E AV+ FQ + GL +G Sbjct: 72 PARVLWSRGDSGRSVRELQARLRQIAWLSEAPT--GTYGPLTERAVRGFQSKRGLPATGR 129 Query: 157 VDSSTLEAMNVPVDLR--IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 D+ T + + + + R + ++ + +L + +G+ Sbjct: 130 TDTVTWRRLVAMTRAPGTWELYPMGGQPAGAPDARCLTGRVLCIDKTSRTLRWMIDGRTL 189 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 V G T ++ + I Sbjct: 190 STMAVRFGTQYTPTREGEFQVYWKSRHHVSTI 221 >gi|284050956|ref|ZP_06381166.1| peptidoglycan binding domain-containing protein [Arthrospira platensis str. Paraca] Length = 247 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+SS V L+ +L G F +VK FQ +GL G+ Sbjct: 182 KSLSHGDSSSRVANLQHKLAYYGYFHARAT--GYFGPITTKSVKAFQRDYGLKVDGVAGP 239 Query: 160 STLEAMNV 167 +TL A+ + Sbjct: 240 ATLAALGM 247 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V +L+ L G + F + + +VK FQ +GL G+V +T A Sbjct: 89 GSSGNHVVQLQNALANHGYF--RARSTGYFGSMTKHSVKAFQRDYGLAVDGIVGPATASA 146 Query: 165 MN 166 + Sbjct: 147 LG 148 >gi|312127392|ref|YP_003992266.1| spore cortex-lytic enzyme [Caldicellulosiruptor hydrothermalis 108] gi|311777411|gb|ADQ06897.1| spore cortex-lytic enzyme [Caldicellulosiruptor hydrothermalis 108] Length = 226 Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V +++RL G D + + AV+ FQ ++GL G+ S TL A Sbjct: 41 GSTGPEVIEIQKRLKQWGYYD--GPIDGIYGYKTYMAVRYFQAKNGLKVDGIAGSETLRA 98 Query: 165 MNV 167 + + Sbjct: 99 LGI 101 >gi|282600699|ref|ZP_06257697.1| putative cell wall lytic activity [Subdoligranulum variabile DSM 15176] gi|282571458|gb|EFB76993.1| putative cell wall lytic activity [Subdoligranulum variabile DSM 15176] Length = 508 Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 16/207 (7%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR--ERLIISGDLDP 126 ++ + T A Q L WP + L G++ + V+ ++ RL Sbjct: 115 VVGQATWEALYSAWLDMQSDLGGTAWPGI---VLRRGDTGMEVRLVQFWLRLAAENYSAL 171 Query: 127 SK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV-NLMRIK 184 + + F A + AV FQ GL G+V +T +N ++ N+ + Sbjct: 172 AAVSVDGNFGASTQRAVTGFQSLFGLTADGLVGRATWNKLNEVALAVANEIVEPNVAPGQ 231 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + G R V L R + + T W Sbjct: 232 FTTTVREGNRGTTVRAVQYYLR---------RLSAYYSDIPSVTVDGVFGSATTKAVKAW 282 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNI 271 + ++ L + Y N+ Sbjct: 283 QARAGLTVDGVVGRLTWNSLYAAVENL 309 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR---ERLIISGDLDPS 127 S + +A+ S G WP + L G++ V++++ L P+ Sbjct: 30 SVKDLAELTSEGETATGTESSGSWPGV---VLKRGSTGSEVEQVQFWLSELAQFNSALPA 86 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F A E AVK+FQ GL G+V +T EA+ Sbjct: 87 LTVDGNFGAATERAVKIFQQEQGLTADGVVGQATWEAL 124 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 16/166 (9%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 V L + SV + ++ F + G+ + T Sbjct: 157 VQFWLRLAAENYSALAAVSVDGNFGASTQRAV--TGFQSLFGLTADGLV------GRATW 208 Query: 76 AQTEK-AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR---ERLIISGDLD--PSKG 129 + + A+A +I+ P + GN +V+ ++ RL PS Sbjct: 209 NKLNEVALAVANEIVEPNVAPGQFTTTVREGNRGTTVRAVQYYLRRLSA--YYSDIPSVT 266 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + F + AVK +Q R GL G+V T ++ V+ Sbjct: 267 VDGVFGSATTKAVKAWQARAGLTVDGVVGRLTWNSLYAAVENLAES 312 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 10/96 (10%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLII-----SGDLDPSKGLSVAFDAYVESAVKLF 145 G WP L LG+S +V +++ L + G + FD ++A++ + Sbjct: 417 DGIWP---ASALTLGSSGPAVLQVQRWLNLIASVDQGY--SFVPETGDFDDATQNALENY 471 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 Q+ GL G+VD++T E++ + Q Sbjct: 472 QLTAGLPTLGVVDAATWESLRTAAEALCSTCQQAKE 507 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 8/80 (10%) Query: 98 PIRPLHLGNSSVSVQRLRER-------LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P L G++ SV RL L L + S + +E V+ Q G Sbjct: 324 PTSTLQPGDTGASVLRLDRLLLFLGQWLPEINFLGSTAP-SDVYSNDLEITVRSAQRYFG 382 Query: 151 LDPSGMVDSSTLEAMNVPVD 170 L +G V ++ Sbjct: 383 LPETGQVTAADWNVFLKAAQ 402 >gi|167039388|ref|YP_001662373.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter sp. X514] gi|300914030|ref|ZP_07131347.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307725285|ref|YP_003905036.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|166853628|gb|ABY92037.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X514] gi|300890715|gb|EFK85860.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307582346|gb|ADN55745.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] Length = 1089 Score = 66.2 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 23/213 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ V+ L+E L I G S F ++AVK FQ ++GL G+V T Sbjct: 319 LKLGSTGNGVKILQETLNIIGY---SLVEDGQFGTRTQAAVKDFQSKNGLTVDGIVGPQT 375 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + + R + + + IPA +G + V + Sbjct: 376 WQKLG-SKLTRTYIRPIYQWNYAWGINISKAYAGAGIGIPA---SFSVDGSNAYFTDV-L 430 Query: 222 GRVDRQTPILHSRINRIM----FNPYWVIPRSIIQKDMMALLRQDPQYLKD----NNIHM 273 G + + I S +N + N ++ S D P Y D + + Sbjct: 431 GGIYKINNIFSSTLNLTVNGNLRNTNNLVNHSPAVDD---RYLYIPYYYSDSSKQHGKIV 487 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +K ++++D++S + Q P N Sbjct: 488 VLDKNNLNVIKQIDFSSSSLKS----QLPNSSN 516 >gi|298492482|ref|YP_003722659.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298234400|gb|ADI65536.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 249 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 7/75 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GWP L LGN V +L++ L G L S + F E+AVK Q+R+GL Sbjct: 176 GWPI-----LRLGNRGSEVVKLQKLLQNLGFLKGS--IDGDFGITTEAAVKAAQIRYGLQ 228 Query: 153 PSGMVDSSTLEAMNV 167 P G+ +T EA Sbjct: 229 PDGIAGGATWEAFVR 243 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AIA I + L +G+ V L+ L + G + + + Sbjct: 21 AIAVPTKIAQVSTVGNINRPTLKVGSQGERVSELQAALKLLGFY--TGAVDGVYQEATAR 78 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 AV F+ GL+P G+VD+ T + + V + + Sbjct: 79 AVSQFKQAAGLNPDGVVDAITWQKLFPNVSIVATNI 114 >gi|113475624|ref|YP_721685.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110166672|gb|ABG51212.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 487 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 70/196 (35%), Gaps = 10/196 (5%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARV--DMGIDSDIPIISKETIAQTEKA 81 + K + ++ + + F D + + I + T Sbjct: 186 FNSSTKVLSFGEVNPQVAIIQRQLAELGFYKGQINSIYDQKTRTAV-IQFQNVYGITPTG 244 Query: 82 IAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Y +P R L LGN+ + V+RL++RL G ++ FD E+ Sbjct: 245 QVGYTTREFLFETRTIPVERVLRLGNTGLDVRRLQQRLRSLGYYQRQ--ITNYFDLSTET 302 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV FQ R+ + P+G+V +T +A D + V+ R + Y + Sbjct: 303 AVIDFQKRNRITPTGIVGQTT-KAFLFDADQVLPPGPVSYSRG---NYARKHYSYQGLLK 358 Query: 201 PAASLEAVENGKVGLR 216 P AVE ++ L Sbjct: 359 PGNEGWAVEQLQILLT 374 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ S V ++ L G + L+ + E AVK FQ GL P+G ++ +T Sbjct: 111 LRCGDFSEIVAEVQRELRELGYF--TANLTGYYGQETEIAVKQFQQEKGLKPTGEIEPTT 168 Query: 162 L 162 Sbjct: 169 W 169 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L GN +V++L+ L G + F E AV+ FQ GL +G+ Sbjct: 355 GLLKPGNEGWAVEQLQILLTRLGYYS--GVIDGFFGLRTEFAVRSFQQDLGLVDTGVATI 412 Query: 160 STLEAMNVP 168 TL+A+ P Sbjct: 413 DTLQALRHP 421 >gi|124023582|ref|YP_001017889.1| hypothetical protein P9303_18821 [Prochlorococcus marinus str. MIT 9303] gi|123963868|gb|ABM78624.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9303] Length = 180 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 70/191 (36%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 R+++++ + L +++G + +V VG +TP ++ +P W P+S Sbjct: 35 REGRHLVLDRRSRRLLVLQDGSLIKSFSVAVGMPGWETPTGEFQVLDKTPHPIWEHPQSG 94 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 R G N + S Sbjct: 95 K-----------------------------------------------RIGSGPNNPLGS 107 Query: 311 TKIEFY------SRNNT------------YMHDTPEPILFNNVVRFETSGCVRV--RNII 350 I FY + ++ H TP R + GCVR+ +I Sbjct: 108 RWIGFYRDCNGRNAHDGDRWLTIDGCVTSGFHGTPHCWTVG---RAVSHGCVRLFEEDIQ 164 Query: 351 DLDVWLLKDTP 361 L + TP Sbjct: 165 SLYRLVKIGTP 175 >gi|319647510|ref|ZP_08001730.1| N-acetylmuramoyl-L-alanine amidase cwlL [Bacillus sp. BT1B_CT2] gi|317390358|gb|EFV71165.1| N-acetylmuramoyl-L-alanine amidase cwlL [Bacillus sp. BT1B_CT2] Length = 224 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 98 PIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P L G+S V+ L++RLI +G P G ++ AVK Q + G+ G+ Sbjct: 55 PTGTILKKGSSGSQVKALQKRLIAAGFSLPKYGADGSYGNETVQAVKALQKKAGIAVDGI 114 Query: 157 VDSSTLEAMNV 167 +T +A+ Sbjct: 115 YGPATEKALAA 125 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP +V++++E L + G+ + +AVK FQM Sbjct: 143 PLPSGIYKVKSPLMKGTAVRQVQEALAALYFYPDKGAKNNGIDGYYGPKTANAVKRFQMM 202 Query: 149 HGLDPSGMVDSSTLEAMNV 167 HGL G+ T + Sbjct: 203 HGLSADGIYGPKTKAKLEA 221 >gi|152970977|ref|YP_001336086.1| hypothetical protein KPN_02435 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955826|gb|ABR77856.1| hypothetical protein KPN_02435 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 313 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 44/172 (25%) Query: 196 VLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 100 IVINVAEMRLYYYPPLGNSVEVLPIGIGQAGRETPRNWVTAVERKQEGPTW-VPTANTRR 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E PG N M I Sbjct: 159 E----------------------------------YAKEGKTLPAMVPPGPDNPMGLYAI 184 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 H T F +R + GC+R+RN D +L + P +R Sbjct: 185 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKFLFDNVPVGTR 229 >gi|164688705|ref|ZP_02212733.1| hypothetical protein CLOBAR_02352 [Clostridium bartlettii DSM 16795] gi|164602181|gb|EDQ95646.1| hypothetical protein CLOBAR_02352 [Clostridium bartlettii DSM 16795] Length = 429 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 16/125 (12%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSG 342 N + + PG N + + + +H + G Sbjct: 75 NKIKNRPYYKTGIPGGDPRNPLGKRWMGLNIDGTQGSTYGIHGNNNEKSIGKN---VSHG 131 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 C+R+ N WL P + I+ + +A V + S W ++ Sbjct: 132 CIRMHNSE--VEWLFDQVPLGTVVLIKNTSNSDN----YIANYYNVKLL-QSGWFTENKK 184 Query: 403 IQFRD 407 +R Sbjct: 185 TYYRK 189 >gi|308173372|ref|YP_003920077.1| L,D-transpeptidase [Bacillus amyloliquefaciens DSM 7] gi|307606236|emb|CBI42607.1| L,D-transpeptidase [Bacillus amyloliquefaciens DSM 7] gi|328553699|gb|AEB24191.1| L,D-transpeptidase [Bacillus amyloliquefaciens TA208] Length = 166 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 16/130 (12%) Query: 236 NRIMFNPY--WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + I+ N IP SI+ L+ L + + V ++ +P Sbjct: 44 HIIIPNLPDPSTIPYSIVVYIGAKKLQ-----LYRLGRLIRTY---PIAVGKILTTTPTG 95 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IID 351 +I + P + + + +H T +P + GC+R+ N + + Sbjct: 96 EFYIVNRQPKPGGPFGAYWLSLSKLH-YGIHGTNDPSSIGK---AVSKGCIRMHNQDVTE 151 Query: 352 LDVWLLKDTP 361 L + T Sbjct: 152 LAATVPNGTK 161 >gi|256398134|ref|YP_003119698.1| cell wall hydrolase/autolysin [Catenulispora acidiphila DSM 44928] gi|256364360|gb|ACU77857.1| cell wall hydrolase/autolysin [Catenulispora acidiphila DSM 44928] Length = 381 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G+S +V +RERL G +D FD VE+AV+ FQ GMV Sbjct: 6 TYRRGDSGPAVAAIRERLARLGLIDAGSIPAQGEPVFDDAVENAVRHFQQTRRTTVDGMV 65 Query: 158 DSSTLE 163 T+ Sbjct: 66 TPGTMR 71 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 13/82 (15%) Query: 97 LPIRPLHLGNSS-----------VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 L LG+ V L+ L+ G ++ A+D AV+ F Sbjct: 73 LEEASWRLGDRDLVPSPAEPPFGDDVAELQRSLLTLGF--DCGRVNGAYDPTTVGAVREF 130 Query: 146 QMRHGLDPSGMVDSSTLEAMNV 167 Q GL +G+ D +T++A+N Sbjct: 131 QRNVGLPATGVTDLATVQALNR 152 >gi|209696096|ref|YP_002264026.1| general secretion pathway protein A [Aliivibrio salmonicida LFI1238] gi|208010049|emb|CAQ80372.1| general secretion pathway protein A [Aliivibrio salmonicida LFI1238] Length = 519 Score = 66.2 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 7/126 (5%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW--PELPIR 100 +D I +P + I + + + + W P + R Sbjct: 385 LQQENGDDLLAIVYHISSKNIALLLP---ERQIEVSHQWFEKHWNGAYMQLWKKPIMTKR 441 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + LG+ ++ L + L + L+ S F E VK FQ GL G+V SS Sbjct: 442 AMRLGDEGEAIVELNQLLSFA--LEQPLTDSNRFTEETEEQVKQFQAIFGLKTDGVVGSS 499 Query: 161 TLEAMN 166 TL ++ Sbjct: 500 TLMWLD 505 >gi|294627225|ref|ZP_06705812.1| lytic enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667703|ref|ZP_06732915.1| lytic enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598464|gb|EFF42614.1| lytic enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292602543|gb|EFF45982.1| lytic enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 244 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSG 155 L G+ S V +L++ L G D F AV FQ +HGL G Sbjct: 108 TAALRHGDDSQDVGKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVTAFQKQHGLQQDG 167 Query: 156 MVDSSTLEAMN-VPVDLRIRQLQ 177 +V T A++ PV +R Q+ Sbjct: 168 VVGRDTRAALSAQPVQIREAQVA 190 >gi|288934536|ref|YP_003438595.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] gi|288889245|gb|ADC57563.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] Length = 313 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 44/172 (25%) Query: 196 VLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 100 IVINVAEMRLYYYPPLGNSVEVLPIGIGQAGRETPRNWVTAVERKQEGPTW-VPTANTRR 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E PG N M I Sbjct: 159 E----------------------------------YAKEGKTLPALVPPGPDNPMGLYAI 184 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 H T F +R + GC+R+RN D +L + P +R Sbjct: 185 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKFLFDNVPVGTR 229 >gi|254424899|ref|ZP_05038617.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196192388|gb|EDX87352.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 252 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 10/135 (7%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQR 113 D D D P ++ T +Q + + I + L G+ SV R Sbjct: 25 TIGVSADALEDRDTPQLTTRTYSQISQ-----RQIAQA---STVIYPTLRNGSVGESVSR 76 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 L+ L + G ++ ++ + AV FQ L G+ +T + + Sbjct: 77 LQATLKLLGFY--QGEVNGTYNELTQQAVASFQSAVNLSADGITGPATWRKLLPAPNDVA 134 Query: 174 RQLQVNLMRIKKLLE 188 + + Sbjct: 135 SDSVASNTDATSTTD 149 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +V +L+ L G D + + A E+AV+ FQ L +V Sbjct: 181 SPPVLRPSAEGPAVSQLQRELQTLGYYD--GTIDGKYGALTEAAVRAFQADQQLIVDAIV 238 Query: 158 DSSTLEAMNV 167 ST A+ Sbjct: 239 GPSTWTALTR 248 >gi|218672072|ref|ZP_03521741.1| hypothetical protein RetlG_10705 [Rhizobium etli GR56] Length = 58 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 25/40 (62%) Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + VK+ +VPV+ Y +AW KD ++++ DD+YG D Sbjct: 1 NGQNHAVKVPQKVPVYVSYFTAWPNKDGVVEYFDDVYGRD 40 >gi|188991086|ref|YP_001903096.1| hypothetical protein xccb100_1690 [Xanthomonas campestris pv. campestris str. B100] gi|167732846|emb|CAP51040.1| hypothetical protein with peptidoglycan-binding domain [Xanthomonas campestris pv. campestris] Length = 441 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRH 149 G P L G V++L+ +L G + F A + AV+ FQ H Sbjct: 216 GSPSADDGKLEQGERGEQVKQLQGQLAQLGAIGRDGKPLHPDGDFGANTKHAVEQFQREH 275 Query: 150 GLDPSGMVDSSTLEAMNV 167 GL G+V T A+ Sbjct: 276 GLQVDGVVGRQTQAALGQ 293 >gi|325918977|ref|ZP_08181044.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325534822|gb|EGD06751.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 644 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 L V++L++ L G D + A+ AVK FQ HGL Sbjct: 441 TSGVLREKAHGAEVEKLQQTLQQLGYKDANGNELKADSAYGQRTGEAVKAFQRAHGLQDD 500 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V TL+A+ + + N Sbjct: 501 GIVGVDTLKALKQAEKTPLLSEKTN 525 >gi|218705523|ref|YP_002413042.1| hypothetical protein ECUMN_2326 [Escherichia coli UMN026] gi|293405463|ref|ZP_06649455.1| hypothetical protein ECGG_00811 [Escherichia coli FVEC1412] gi|298381151|ref|ZP_06990750.1| hypothetical protein ECFG_00872 [Escherichia coli FVEC1302] gi|218432620|emb|CAR13514.1| conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Escherichia coli UMN026] gi|291427671|gb|EFF00698.1| hypothetical protein ECGG_00811 [Escherichia coli FVEC1412] gi|298278593|gb|EFI20107.1| hypothetical protein ECFG_00872 [Escherichia coli FVEC1302] Length = 310 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPIGTRVQI 230 >gi|254426449|ref|ZP_05040165.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196187863|gb|EDX82829.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 498 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 28/189 (14%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAF-------YQDI 88 D + + I D + S + ++ + + Y+D Sbjct: 180 RDLNLQKPILPIWGSESDARAPSSAGELQSYLARFPGSSVWRIPRVGERGQAWNLSYKDK 239 Query: 89 LSR--GGWPE---LPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 +S+ GG P LP R L G+ V+ L+ L + + F+ E A Sbjct: 240 VSQPVGGNPSEFELPSLSRILRRGSVGEDVKALQRALNALAF--EAGNTNGEFNTQTERA 297 Query: 142 VKLFQMRHGLDPSGMVDSSTLEA-------MNVPVDLRIRQLQVNLMR-----IKKLLEQ 189 V FQ + G+ G V T A +N P +++L R ++ Sbjct: 298 VTRFQQKAGITIDGEVGPETWSALGGELGLVNRPDQGILQELGNFAEREANRDLQWTSPT 357 Query: 190 KMGLRYVLV 198 +Y+ + Sbjct: 358 SEAEKYLEI 366 >gi|171321312|ref|ZP_02910273.1| Peptidoglycan-binding domain 1 protein [Burkholderia ambifaria MEX-5] gi|171093419|gb|EDT38603.1| Peptidoglycan-binding domain 1 protein [Burkholderia ambifaria MEX-5] Length = 266 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 3/114 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V L+ +L+ + + +AV FQ HGL G+ Sbjct: 3 KTLRLGDRGTDVGYLQRQLVAA---SARIDTDAIYGNATRTAVMAFQASHGLVADGIAGP 59 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 T + +L R L+ + + + + + +G+ Sbjct: 60 KTWSTLASGRRDPRHLTDADLQRSADRLQVDLAAVRAVNEVESHGAGFLPDGRP 113 >gi|300113040|ref|YP_003759615.1| peptidoglycan-binding domain 1 protein [Nitrosococcus watsonii C-113] gi|299538977|gb|ADJ27294.1| Peptidoglycan-binding domain 1 protein [Nitrosococcus watsonii C-113] Length = 683 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 2/90 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV L++RL G F + ESAV+ FQ + G+V T Sbjct: 216 LGRGSRGASVIELQKRLSALGF--NPGAADGIFGSRTESAVRAFQHSQRITVDGIVGPQT 273 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + P + + L ++ Sbjct: 274 WSRLYGPTPSPVPSPPSGTTSVTWKLPPEI 303 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 106 NSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 +S+ V+ +++ L I G + SAV+ FQ RH L G+V T A Sbjct: 480 SSTDHVRWIQQSLNKIMGL---RLAVDGILGPMTRSAVRSFQSRHRLAVDGIVGPHTERA 536 Query: 165 MNVPVDL 171 + Sbjct: 537 LVAAGAD 543 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 17/42 (40%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L +S + A++ FQ + GL G+ T A+ Sbjct: 128 LGSRLPVSGVMNRGTRDALRQFQKQQGLPVDGIAGPPTERAL 169 >gi|206578471|ref|YP_002237659.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae 342] gi|290508736|ref|ZP_06548107.1| erfK/srfK [Klebsiella sp. 1_1_55] gi|206567529|gb|ACI09305.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae 342] gi|289778130|gb|EFD86127.1| erfK/srfK [Klebsiella sp. 1_1_55] Length = 311 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 44/172 (25%) Query: 196 VLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVINVAEMRLYYYPPLGNSVEVLPIGIGQAGRETPRNWVTAVERKQEGPTW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E PG N M I Sbjct: 157 E----------------------------------YAKEGKTLPALVPPGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 H T F +R + GC+R+RN D +L + P +R Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKFLFDNVPVGTR 227 >gi|254414875|ref|ZP_05028639.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178364|gb|EDX73364.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 406 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 4/146 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G++ + V+ L++ L G + F A E AV LFQ +GL+P G+V Sbjct: 191 EVLREGDTGLRVKELQQILSAQGF--NPGPIDGIFGAGTEDAVVLFQKFYGLEPDGLVGP 248 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 +T + + V + ++ G + + P ++ ++ + Sbjct: 249 NTWKVLER-VSQPTQPPPIDTGTPTAPDTTPGGSKPLNPQTPFTQVQLLDTYRYYRELPH 307 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWV 245 + L + F+ W Sbjct: 308 QTQAIQWLQAQLSEA-TLVEFSQKWR 332 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 5/111 (4%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW---PELPIRPLHLGNSSVSVQRLR 115 +D + I + ++ + W P P PL G+ V++++ Sbjct: 296 LDTYRYYRELPHQTQAIQWLQAQLSEATLVEFSQKWRNQPLEPFLPLQEGSVGSQVKQVQ 355 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 E L G + A ++AV FQ G+ G+V + T +N Sbjct: 356 EVLQQEGF--DPGPADGIYGAKTKAAVIAFQRSKGMTADGIVGAVTWSVLN 404 >gi|297522118|ref|ZP_06940504.1| hypothetical protein EcolOP_31053 [Escherichia coli OP50] Length = 144 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 43/169 (25%), Gaps = 44/169 (26%) Query: 202 AASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L G + + +G++ + TPI +++ R P W + + Sbjct: 1 EMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE------ 54 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 G N M + Sbjct: 55 -----------------------------YRAAGEPLPAVVPAGPDNPMGLYALYIGRLY 85 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN +L + P +R Sbjct: 86 AI--HGTNAN--FGIGLR-VSHGCVRLRNED--IKFLFEKVPVGTRVQF 127 >gi|544113|sp|P36550|CWLL_BACLI RecName: Full=N-acetylmuramoyl-L-alanine amidase CwlL; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|436573|dbj|BAA02647.1| CwlL protein [Bacillus licheniformis] gi|742336|prf||2009368D cell wall protein Length = 360 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++RLI +G P G +++ AVK Q + G+ G+ +T Sbjct: 196 LKKGASGSQVKALQKRLIAAGFSLPKYGADGSYENETVQAVKALQKKAGIAVDGIYGPAT 255 Query: 162 LEAMNV 167 +A+ Sbjct: 256 EKALAA 261 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP V++++E L + G+ + +AVK FQ+ Sbjct: 279 PLPSGIYKVKSPLMKGTGVRQIQEALAALYFYPDKGAKNNGIDGYYGPKTANAVKRFQLM 338 Query: 149 HGLDPSGMVDSSTLEAMNV 167 HGL G+ S T + Sbjct: 339 HGLSADGIYGSDTKAKLKT 357 >gi|119511704|ref|ZP_01630808.1| ErfK/YbiS/YcfS/YnhG-like protein [Nodularia spumigena CCY9414] gi|119463613|gb|EAW44546.1| ErfK/YbiS/YcfS/YnhG-like protein [Nodularia spumigena CCY9414] Length = 237 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 25/172 (14%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ--TPILHSRINRIMFNPYWVIPRSIIQK 253 VN P + N + V P + + N + + Q Sbjct: 52 TSVNKPTYQPDVQRNSVGNMSGAVSQNSAGSTELLPKMRALFPGQRQNSQGLSSPTSSQT 111 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP-------NFIFRQDP---- 302 +++ L Y+ + + + + W +P + Q P Sbjct: 112 EVVVNLSDRRTYVYKGGEVIASY---PIAIGKEGWETPTGSFRITDKQKYPIWQHPITGK 168 Query: 303 ----GKINAMASTKIEFYS--RNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G + + I F+S RN H TP+ L + GC+R+RN Sbjct: 169 VFPSGADSPLGERWIGFWSDGRNEIGFHGTPDTHLLGA---AISHGCLRMRN 217 >gi|186684276|ref|YP_001867472.1| ErfK/YbiS/YcfS/YnhG family protein [Nostoc punctiforme PCC 73102] gi|186466728|gb|ACC82529.1| ErfK/YbiS/YcfS/YnhG family protein [Nostoc punctiforme PCC 73102] Length = 351 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 43/157 (27%), Gaps = 52/157 (33%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V+V++ +V + VG+ +TP ++ + P W P + Sbjct: 227 VVVDLSDRRTYVYAGDEVIASYPIAVGKKGWETPTGSFQVIHMRHYPIWRHPITGK---- 282 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 G + + I F Sbjct: 283 -------------------------------------------VFQAGTDSPLGDRWIGF 299 Query: 316 YS--RNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 +S RN H TP+ L + GC+R+RN Sbjct: 300 WSDGRNEIGFHGTPDIDLVGT---AVSHGCLRMRNSD 333 >gi|212378958|gb|ACJ24812.1| matrix metalloproteinase [Pinus taeda] Length = 364 Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + L+ G L ++ FD VESAV+ +Q GL+ +G++D +T+ Sbjct: 65 GDRMQGLPDLKRYFRRFGYLSAQNNVTEDFDEAVESAVRTYQKNFGLNVTGVLDEATISQ 124 Query: 165 MNVPVDLRIRQLQVNLM-RIKKLLEQKMGLR 194 + VP R + + R + L G Sbjct: 125 LMVPRCGREDIINGSSAMRGRGLFPFFPGSP 155 >gi|308069833|ref|YP_003871438.1| spore cortex-lytic enzyme precursor (Germination-specific amidase) (SCLE) [Paenibacillus polymyxa E681] gi|305859112|gb|ADM70900.1| Spore cortex-lytic enzyme precursor (Germination-specific amidase) (SCLE) [Paenibacillus polymyxa E681] Length = 217 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G S V L+++L G G + + + AV FQ +GL P G+ Sbjct: 30 TSALKKGVQSERVLELQQQLHSLGYFK--AGFTAYYGSLTSKAVARFQRDNGLIPDGVAG 87 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV-LVNIPAASLEAVENGKVGLRS 217 ++T + +R+ L + + + G + V + A L V++G+ Sbjct: 88 AATQAKLESFGKVRVTALD---QLARIIYSEARGESFEGQVAVGAVVLNRVQSGEFPSSI 144 Query: 218 TVIVGRVDRQTPI 230 ++ + + T + Sbjct: 145 PDVILQPGQFTAV 157 >gi|304436897|ref|ZP_07396861.1| endopeptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370096|gb|EFM23757.1| endopeptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 220 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+ V ++ +L G F AVK FQ HGL G+V Sbjct: 22 SAESFQIGDQGTDVAEIQGQLSNYGY---DVAADGDFGPATAEAVKEFQAAHGLAVDGLV 78 Query: 158 DSSTLEAMNVPVDLRI 173 ST EA+ ++ Sbjct: 79 GPSTYEALLGKAMPQV 94 >gi|288554241|ref|YP_003426176.1| endopeptidase SpoIID/LytB [Bacillus pseudofirmus OF4] gi|288545401|gb|ADC49284.1| cell wall lytic activity, endopeptidase (spoIID/lytB) [Bacillus pseudofirmus OF4] Length = 527 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L N +V L+++L G S ++ F +SAVK FQ H L G+V ++ Sbjct: 230 TLRLNNHGDAVSSLQQKLKDLGYYTSS--ITGTFGPQTDSAVKDFQRAHNLVADGIVGAN 287 Query: 161 TLEAMN 166 T A+ Sbjct: 288 TYRALA 293 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G +S +VQ L++ L +G + + + AV+ FQ + L G+ Sbjct: 136 SNQVLRQGTTSGAVQELQQLLSRAGHFNSNAT--GYYGRVTTEAVRAFQRQQNLTVDGIA 193 Query: 158 DSSTLEAMN 166 T+ A+ Sbjct: 194 GPKTITALQ 202 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G + +V ++ +L G + + E AV+ FQ + GL G+ +T Sbjct: 326 LRIGTTGAAVTNMQAQLRTIGLFGQAPT--GYYGTVTEQAVRAFQRQQGLTVDGIAGPAT 383 Query: 162 LEAMNV 167 L + Sbjct: 384 LGKLQQ 389 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V+ L++ L G + + + AVK FQ +GL +G Sbjct: 44 ALGDQALSEGMNDPDVKDLQKALKDRGHF-NYHTATGYYGSITTEAVKAFQKANGLPATG 102 Query: 156 MVDSSTLEAMN 166 D +TL + Sbjct: 103 NADLATLAQLT 113 >gi|260775196|ref|ZP_05884094.1| general secretion pathway protein A [Vibrio coralliilyticus ATCC BAA-450] gi|260608897|gb|EEX35059.1| general secretion pathway protein A [Vibrio coralliilyticus ATCC BAA-450] Length = 536 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 11/170 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID-SDIPIISKETIAQT 78 L S +N + V + + S + + T Sbjct: 370 LCQQSDQSAFRCTQSR--GTLNTLRQANVPVLLSLSKDSLQSYAVLYKLTQNSAQLLLGT 427 Query: 79 EK------AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E+ + W + L S ++ L +RL L + S Sbjct: 428 ERIELPISKLKELWQGQYHQIWQGYWHQTLKPNMSGRAIAELDDRLSKV--LGEPERESD 485 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 +D + V+LFQ GL G+ TL+ + L + + Sbjct: 486 VYDQELMRKVELFQQWQGLHVDGIAGRRTLQRLEKLSQEHAPSLTASEEK 535 >gi|326442995|ref|ZP_08217729.1| hypothetical protein SclaA2_18108 [Streptomyces clavuligerus ATCC 27064] Length = 326 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 11/140 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ RL G + + AV+ FQ + GL +G+ D++T Sbjct: 117 GAQGPRVRELQARLAQIGWFGSAPT--GFYGRLTADAVRGFQGKRGLSVTGLTDTTTWRK 174 Query: 165 MN----VPVDL-----RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + P R ++ +L + + R + ++ SL V +G V Sbjct: 175 LRGMTTAPTAEELSGTRKDPVKAAHKPRPRLDPRCLNGRVLCISKTTRSLSWVVDGTVRS 234 Query: 216 RSTVIVGRVDRQTPILHSRI 235 V G T + Sbjct: 235 TMDVRFGAEYTPTREGVFSV 254 >gi|317130716|ref|YP_004096998.1| NLP/P60 protein [Bacillus cellulosilyticus DSM 2522] gi|315475664|gb|ADU32267.1| NLP/P60 protein [Bacillus cellulosilyticus DSM 2522] Length = 542 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 17/141 (12%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRP----------LHLGNSSVSVQRLRERLII 120 +T E+A+ P L +G S V V L+ RL + Sbjct: 307 GPQTFQALERALT-----EKNNPSSTTPTSNNNANADATTLLRVGQSGVGVTELQARLKV 361 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G F ++A+ FQ GL G+V ST + ++ + ++ ++ L Sbjct: 362 LGYFKQEPT--GFFGDITKNALTQFQKDWGLVSDGLVTQSTWDKLDEVSAVHLKTVETML 419 Query: 181 MRIKKLLEQKMGLRYVLVNIP 201 + + + +P Sbjct: 420 PKTSFNPLNLVADAGNFIGVP 440 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G S V L+E+L G + F AV+ FQ + L G+V Sbjct: 35 KTLSFGVKSNDVVVLQEQLKEKGYF-NYPTATGYFGEVTRKAVQDFQRANNLKADGIVGP 93 Query: 160 STLEAMNVPVDLRIRQ 175 T A+ ++ Q Sbjct: 94 RTFAALANTTSVQPTQ 109 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V+ ++ L +G + ++ + + V+ FQ GL G+ Sbjct: 135 TTNVLRVGSRGKDVEAVQTILKKTGFFNHDA-ITGYYGTITQEGVRNFQRARGLKVDGIA 193 Query: 158 DSSTLEAMNV 167 T+ A+N Sbjct: 194 GPQTIAALNK 203 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+ L G ++ F +AV+ FQ + L G+ T Sbjct: 253 LREGSQGEQVRTLQTALKELGYF--QGDVTTIFGPITRNAVRSFQQANSLKVDGVAGPQT 310 Query: 162 LEAMNVPVDLR 172 +A+ + + Sbjct: 311 FQALERALTEK 321 >gi|319409155|emb|CBI82799.1| putative Peptidoglycan-binding domain 1 protein [Bartonella schoenbuchensis R1] Length = 395 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L LG V+ L++RL G + + SA+ FQ H L+ G Sbjct: 214 SVRANGLRLGCKGYRVEALQKRLNDLGY---PVAIDSDYGPDTRSAIFSFQADHNLEVDG 270 Query: 156 MVDSSTLEAMNV-PVDLRIRQLQVNLMRIK 184 +V + T EA++V + R+ V++ ++ Sbjct: 271 VVGTKTQEALDVATPMISPRRSGVSIADLR 300 >gi|302556105|ref|ZP_07308447.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302473723|gb|EFL36816.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 83 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L G + V L++RL+ D+ S ++D + +AV FQ+ +G+ G+ Sbjct: 6 AGTLREGATGPEVTELQQRLLRIPDVYRDGATSGSYDPTLTAAVARFQLWYGIRGDETGV 65 Query: 157 VDSSTLEAMN 166 + T A+ Sbjct: 66 YGNDTRAALE 75 >gi|213422205|ref|ZP_03355271.1| hypothetical protein Salmonentericaenterica_32498 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 61 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 1 ALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 43 >gi|170769767|ref|ZP_02904220.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] gi|170121381|gb|EDS90312.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 44/179 (24%) Query: 192 GLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRS 249 + ++VN+ L + V +G R+TP + + R P W + Sbjct: 94 ARKGIVVNVAEMRLYYYPPDSNTVEVFPVGIGEAGRETPRNWVTTVERKQEAPTWTPTPN 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 ++ + + G N M Sbjct: 154 TRRE-----------------------------------YAKRGESLPAFVPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 I H T F +R + GC+R+RN D +L + P +R I Sbjct: 179 LYAIYIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|15616210|ref|NP_244515.1| hypothetical protein BH3648 [Bacillus halodurans C-125] gi|10176272|dbj|BAB07367.1| BH3648 [Bacillus halodurans C-125] Length = 1113 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 13/160 (8%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L RPL LG V +L++ L +G + F + +K FQ H L +G Sbjct: 664 ALATRPLQLGMYHPDVVQLKKDLAKAGYFVSNNPND-YFGPTTTTKLKEFQTDHNLPATG 722 Query: 156 MVDSSTLEAMNVPVDLRIRQLQ----------VNLMRIKKLLEQKMGLRYVLVNIPAASL 205 + D TL + V Q V + + + G Y + + Sbjct: 723 IADRQTLNKIKEVVQAIGVQYVFQGKRQFGHGVGMTQWGAYGMSQQGFTYRQILTYYYTD 782 Query: 206 EAVENGKVGLRS--TVIVGRVDRQTPILHSRINRIMFNPY 243 V + + V++G + S + N Sbjct: 783 VTVSSSSSYRNTNVRVMIGDEQINSATFSSTGTYSVQNIS 822 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 10/153 (6%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + + V D + + + + D P+ ++ Sbjct: 317 LSGVLFLGVRDSKVIDLKKMLAD----LGYGVSDNPTTYFGPVTEEQVKRFQNDFGRPVT 372 Query: 87 DILSRGGWPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 ++ R + + L G + V +L+E L I G S + F + E+ Sbjct: 373 GVVDRATFEFIQKMVEEGFVLRSGMNHPEVLKLKEYLAILGY-RVSNTPNDFFGSVTEAK 431 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 V+ +Q +GL +G+V L + ++ Sbjct: 432 VREYQYDNGLQQTGIVTKQLLTELEKQATGPLK 464 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 8/168 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL LG V +L+ L G S + F + V+ FQ GL G+V Sbjct: 247 ATGPLRLGMYREDVIQLKINLEKVGF-PVSSNPNTYFGPTTDRQVRAFQQSQGLTADGIV 305 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL-- 215 SST++A+ + + L V ++ L + L Y + + P V +V Sbjct: 306 GSSTIKALEEALSGVLF-LGVRDSKVIDLKKMLADLGYGVSDNPTTYFGPVTEEQVKRFQ 364 Query: 216 --RSTVIVGRVDRQTPILHSRI--NRIMFNPYWVIPRSIIQKDMMALL 259 + G VDR T ++ + P + K+ +A+L Sbjct: 365 NDFGRPVTGVVDRATFEFIQKMVEEGFVLRSGMNHPEVLKLKEYLAIL 412 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 12/120 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ + ++ L I G + S + E V+ FQ ++ L +G VD T Sbjct: 181 FQVGDRDPEIITIKLHLEILGFKVSNNPTS-YYGIQTEEMVRAFQSQYQLPVTGKVDQET 239 Query: 162 LEAMNVPVDLRIR---------QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 ++ +R QL++NL ++ + + + A + + Sbjct: 240 RNLLSQRATGPLRLGMYREDVIQLKINLEKVGFPVSSNPNTYFG--PTTDRQVRAFQQSQ 297 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 10/95 (10%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 ++T T++ + + PL +G L+E+L G + + + Sbjct: 442 QQTGIVTKQLLTELEKQA---------TGPLKMGMYREDAITLKEQLAALGYVISNNPTN 492 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + E+ VK FQ HGL +G+ DS TL+ + Sbjct: 493 -YYGPSTEATVKQFQKDHGLQVNGIADSLTLKKIQ 526 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + + L+E L I G + A V+ FQ ++GL +G+ D T++ Sbjct: 603 GMRASGIITLKEHLAILGFRVSDNPT-TLYGAVTTEQVRQFQQKYGLSSTGIADQKTVDQ 661 Query: 165 MNVPVDLRIRQ 175 + ++ Sbjct: 662 LRALATRPLQL 672 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 4/121 (3%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI---RPLHLG 105 + + P + I ++ + L+ G Sbjct: 477 EQLAALGYVISNNPTNYYGPSTEATVKQFQKDHGLQVNGIADSLTLKKIQELLNQTLYFG 536 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V L+ L G L S + F + E V+ F+ R L +G+V+ L+ M Sbjct: 537 VRNDKVVELKLELERLG-LSVSSSPTTYFGSVTEEMVREFKRRANLPVTGVVNDEQLKFM 595 Query: 166 N 166 Sbjct: 596 K 596 Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMV 157 L LG +V L++ L L+ S FD +E + Q +PSG V Sbjct: 41 ETLKLGVDHQNVLVLKQVLYSLEYLESDDPESFTTYFDPDLEQVIVDLQEMFQFEPSGEV 100 Query: 158 D 158 Sbjct: 101 T 101 >gi|257867798|ref|ZP_05647451.1| carboxyl-terminal protease [Enterococcus casseliflavus EC30] gi|257874125|ref|ZP_05653778.1| carboxyl-terminal protease [Enterococcus casseliflavus EC10] gi|257801881|gb|EEV30784.1| carboxyl-terminal protease [Enterococcus casseliflavus EC30] gi|257808289|gb|EEV37111.1| carboxyl-terminal protease [Enterococcus casseliflavus EC10] Length = 476 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 94 WPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P LP L G SS +V L + L G F+ +AVK FQ H L Sbjct: 383 FPPLPRDNALKAGQSSTAVNNLNQFLKALGY----ATSGDTFNDETTAAVKAFQEAHNLK 438 Query: 153 PSGMVDSSTLEAMNVPVDLRIR 174 +G VD+ T +A+ V +++ Sbjct: 439 ATGEVDADTAQAIEKEVAEKLK 460 >gi|294814609|ref|ZP_06773252.1| Lipoprotein [Streptomyces clavuligerus ATCC 27064] gi|294327208|gb|EFG08851.1| Lipoprotein [Streptomyces clavuligerus ATCC 27064] Length = 344 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ RL G + + AV+ FQ + GL +G+ D++T Sbjct: 135 GAQGPRVRELQARLAQIGWFGSAPT--GFYGRLTADAVRGFQGKRGLSVTGLTDTTTWRK 192 Query: 165 MN----VPVDLRIRQLQVNLMRIKKLLEQKMGLRY-----VLVNIPAASLEAVENGKVGL 215 + P + + + ++ ++ R + ++ SL V +G V Sbjct: 193 LRGMTTAPTAEELSGTRKDPVKAAHKPRPRLDPRCLNGRVLCISKTTRSLSWVVDGTVRS 252 Query: 216 RSTVIVGRVDRQTPILHSRI 235 V G T + Sbjct: 253 TMDVRFGAEYTPTREGVFSV 272 >gi|319949441|ref|ZP_08023502.1| N-acetylmuramoyl-L-alanine amidase cwlM [Dietzia cinnamea P4] gi|319436903|gb|EFV91962.1| N-acetylmuramoyl-L-alanine amidase cwlM [Dietzia cinnamea P4] Length = 396 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 15/122 (12%) Query: 103 HLGNSSVSVQRLRERLIISGDL--------------DPSKGLSVAFDAYVESAVKLFQMR 148 G+ V +R L G L FDA +E+AV FQ Sbjct: 4 RRGDRGPEVAAIRATLAGMGLLHNIDSVGVTEPETGSVLARTDAVFDADLETAVLAFQQA 63 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 GL G+V +T A++ + ++ + K + + + V Sbjct: 64 RGLISDGIVGPATQAALD-DASHVLGTRDLSYIVSKPMAGDDVAQLQRRLGELGFYAGLV 122 Query: 209 EN 210 + Sbjct: 123 DG 124 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V +L+ RL G + F A +AV FQ L+ G+V + TL+ + Sbjct: 100 MAGDDVAQLQRRLGELGFYA--GLVDGTFGALTHAAVTDFQRDCALEADGVVGAETLDTI 157 Query: 166 NV 167 N Sbjct: 158 NR 159 >gi|238913775|ref|ZP_04657612.1| hypothetical protein SentesTe_21948 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 309 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 53/175 (30%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|238895496|ref|YP_002920231.1| hypothetical protein KP1_3568 [Klebsiella pneumoniae NTUH-K2044] gi|238547813|dbj|BAH64164.1| hypothetical protein KP1_3568 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 311 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 44/172 (25%) Query: 196 VLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVINVAEMRLYYYPPLGNSVEVLPIGIGQAGRETPRNWVTAVERKQEGPTW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E PG N M I Sbjct: 157 E----------------------------------YAKEGKTLPALVPPGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 H T F +R + GC+R+RN D +L + P +R Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKFLFDNVPVGTR 227 >gi|331668678|ref|ZP_08369526.1| protein ErfK/srfK [Escherichia coli TA271] gi|331063872|gb|EGI35783.1| protein ErfK/srfK [Escherichia coli TA271] Length = 311 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|26248328|ref|NP_754368.1| hypothetical protein c2476 [Escherichia coli CFT073] gi|91211241|ref|YP_541227.1| hypothetical protein UTI89_C2228 [Escherichia coli UTI89] gi|110642158|ref|YP_669888.1| hypothetical protein ECP_1988 [Escherichia coli 536] gi|227885541|ref|ZP_04003346.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|237704406|ref|ZP_04534887.1| erfK/srfK [Escherichia sp. 3_2_53FAA] gi|300936517|ref|ZP_07151433.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 21-1] gi|300985217|ref|ZP_07177324.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 200-1] gi|300992316|ref|ZP_07179860.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 45-1] gi|301051399|ref|ZP_07198212.1| ErfK/YbiS/YcfS/YnhG- like protein [Escherichia coli MS 185-1] gi|306814895|ref|ZP_07449057.1| hypothetical protein ECNC101_22677 [Escherichia coli NC101] gi|331647595|ref|ZP_08348687.1| protein ErfK/srfK [Escherichia coli M605] gi|26108732|gb|AAN80935.1|AE016762_188 Protein erfK/srfK precursor [Escherichia coli CFT073] gi|91072815|gb|ABE07696.1| hypothetical protein UTI89_C2228 [Escherichia coli UTI89] gi|110343750|gb|ABG69987.1| protein ErfK/SrfK precursor [Escherichia coli 536] gi|226900772|gb|EEH87031.1| erfK/srfK [Escherichia sp. 3_2_53FAA] gi|227837481|gb|EEJ47947.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300296969|gb|EFJ53354.1| ErfK/YbiS/YcfS/YnhG- like protein [Escherichia coli MS 185-1] gi|300306560|gb|EFJ61080.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 200-1] gi|300406834|gb|EFJ90372.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 45-1] gi|300458345|gb|EFK21838.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 21-1] gi|305852289|gb|EFM52741.1| hypothetical protein ECNC101_22677 [Escherichia coli NC101] gi|307554029|gb|ADN46804.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ABU 83972] gi|307626503|gb|ADN70807.1| hypothetical protein UM146_07050 [Escherichia coli UM146] gi|315286927|gb|EFU46344.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 110-3] gi|315290147|gb|EFU49528.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 153-1] gi|324010299|gb|EGB79518.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 60-1] gi|331043319|gb|EGI15457.1| protein ErfK/srfK [Escherichia coli M605] Length = 311 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGKLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|209919465|ref|YP_002293549.1| hypothetical protein ECSE_2274 [Escherichia coli SE11] gi|209912724|dbj|BAG77798.1| conserved hypothetical protein [Escherichia coli SE11] gi|324119031|gb|EGC12920.1| ykud domain-containing protein [Escherichia coli E1167] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGMYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|118470140|ref|YP_891129.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium smegmatis str. MC2 155] gi|118171427|gb|ABK72323.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium smegmatis str. MC2 155] Length = 396 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHGL 151 L G+ +V +R L G ++ FD ++ AV+ FQ GL Sbjct: 2 SSLRRGDRGGAVTEIRAALAALGLIENPDTDLSTGRHVALDVFDDELDHAVRAFQQHRGL 61 Query: 152 DPSGMVDSSTLEAMN 166 G+V +T A+ Sbjct: 62 LVDGIVGEATYRALR 76 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 14/99 (14%) Query: 69 IISKETIAQTEKAIAFY--QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 I+ + T +A + + + G P V L+ RL G Sbjct: 66 IVGEATYRALREASYRLGARILSHQFGAP----------MYGDDVATLQARLQDLGFY-- 113 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + F +A+ +Q +GL P G+ TL ++ Sbjct: 114 TGLVDGYFGLQTHNALMSYQREYGLYPDGICGPETLRSL 152 >gi|157155230|ref|YP_001463333.1| hypothetical protein EcE24377A_2272 [Escherichia coli E24377A] gi|170681366|ref|YP_001743204.1| hypothetical protein EcSMS35_1134 [Escherichia coli SMS-3-5] gi|187731449|ref|YP_001879647.1| hypothetical protein SbBS512_E0968 [Shigella boydii CDC 3083-94] gi|191167721|ref|ZP_03029529.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] gi|194428777|ref|ZP_03061313.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B171] gi|260844589|ref|YP_003222367.1| hypothetical protein ErfK [Escherichia coli O103:H2 str. 12009] gi|293446362|ref|ZP_06662784.1| hypothetical protein ECCG_00510 [Escherichia coli B088] gi|157077260|gb|ABV16968.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] gi|170519084|gb|ACB17262.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|187428441|gb|ACD07715.1| ErfK/YbiS/YcfS/YnhG family protein [Shigella boydii CDC 3083-94] gi|190902234|gb|EDV61975.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] gi|194413224|gb|EDX29510.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B171] gi|257759736|dbj|BAI31233.1| conserved hypothetical protein ErfK [Escherichia coli O103:H2 str. 12009] gi|291323192|gb|EFE62620.1| hypothetical protein ECCG_00510 [Escherichia coli B088] gi|323161918|gb|EFZ47792.1| hypothetical protein ECE128010_1879 [Escherichia coli E128010] gi|323183766|gb|EFZ69157.1| hypothetical protein ECOK1357_2747 [Escherichia coli 1357] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|92110337|emb|CAJ87605.1| putative exported protein ErfK [Escherichia coli] Length = 311 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|15616227|ref|NP_244532.1| N-acetylmuramoyl-L-alanine amidase (major autolysin) [Bacillus halodurans C-125] gi|10176289|dbj|BAB07384.1| N-acetylmuramoyl-L-alanine amidase (major autolysin) [Bacillus halodurans C-125] Length = 588 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 8/145 (5%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG---IDSDIPIISKETIAQTEKAI-- 82 + + + + F + + +S + + T T I Sbjct: 252 PATLRFGDRHPYVIQLKKDLAEAGFPVSGSPTEYFGSVTESQVKAF-QRTYGLTVDGIVG 310 Query: 83 -AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y + L G+ V +L++ L G S + F + ES Sbjct: 311 SATYSKLDEVLKNGTGRPATLRFGDRHPYVIQLKKDLAEVGF-PVSGSPTEYFGSVTESQ 369 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMN 166 VK FQ +GL G+V S+T ++ Sbjct: 370 VKAFQRAYGLTADGIVGSATYSKLD 394 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 23/171 (13%) Query: 14 FFVYLILPMGLSLV----------EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGI 63 F +++ + L L + + D + + + F D Sbjct: 3 FHKFIVFCIALLLSFVLWSNETAQAQVLKLGTYDTAVIQLKIDLEKAGFKV----SDNPT 58 Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGW--------PELPIRPLHLGNSSVSVQRLR 115 P ++ + I + L G+ V +L+ Sbjct: 59 TYFGPTTEQKVKEFQQAYGLTVDGIAGPATLSKLDEVVRGTVRPATLRFGDRHPYVIQLK 118 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + L +G S + F + ES VK FQ HGL +G+V+S+T ++ Sbjct: 119 KDLAEAGF-PVSGSPTEYFGSVTESQVKAFQRAHGLTANGVVESATYAKLD 168 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V +L++ L +G S + F + ES VK FQ HGL +G+V S+ Sbjct: 179 TLRFGDRHPYVIQLKKDLAEAGF-PVSGSPTEYFGSVTESQVKAFQRAHGLTANGVVGSA 237 Query: 161 TLEAMN 166 T ++ Sbjct: 238 TYAKLD 243 >gi|220931154|ref|YP_002508062.1| Spore cortex-lytic enzyme SleB [Halothermothrix orenii H 168] gi|219992464|gb|ACL69067.1| Spore cortex-lytic enzyme SleB [Halothermothrix orenii H 168] Length = 239 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S +V+ ++ +L G + F AV+ FQ ++GL G+V T A Sbjct: 46 GTSGSNVRLVQWKLQQWGYY--EGRIDGYFGPETSEAVREFQRKNGLRVDGLVGPQTWAA 103 Query: 165 M--NVPVDLRIRQLQVNLMR 182 + RQ + R Sbjct: 104 LGYEARPTTYARQTAAAVSR 123 >gi|332709903|ref|ZP_08429859.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332351274|gb|EGJ30858.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 140 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 99 IRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G V+ L++ L G L ++ +A+K FQ+++ L G+V Sbjct: 66 APTLRPGQQGDKVRILQKLLLKKYGYRQKQVPLDGTYNDGTVAAIKKFQLKNSLSADGIV 125 Query: 158 DSSTLE 163 T + Sbjct: 126 GPQTWK 131 >gi|229097030|ref|ZP_04227998.1| hypothetical protein bcere0020_22760 [Bacillus cereus Rock3-29] gi|228686426|gb|EEL40336.1| hypothetical protein bcere0020_22760 [Bacillus cereus Rock3-29] Length = 1027 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + LG+ V++++ RL + FD+ + VK FQ R L G+V Sbjct: 939 PGHVVKLGDKGAEVKKIQARLNEEN---IDVNIDGIFDSNTQMKVKEFQKRFELQVDGIV 995 Query: 158 DSSTL 162 T Sbjct: 996 GPETW 1000 >gi|191170031|ref|ZP_03031585.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|218699444|ref|YP_002407073.1| hypothetical protein ECIAI39_1058 [Escherichia coli IAI39] gi|190909547|gb|EDV69132.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|218369430|emb|CAR17193.1| conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Escherichia coli IAI39] gi|281179058|dbj|BAI55388.1| conserved hypothetical protein [Escherichia coli SE15] gi|294493197|gb|ADE91953.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli IHE3034] gi|323956268|gb|EGB52014.1| ykud domain-containing protein [Escherichia coli H263] gi|330911799|gb|EGH40309.1| l,D-transpeptidase ErfK [Escherichia coli AA86] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGKLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|75674351|ref|YP_316772.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] gi|74419221|gb|ABA03420.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] Length = 172 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 47/169 (27%), Gaps = 46/169 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V L + + LR V VGR +Q +RI NP W P + + Sbjct: 41 IVVKTSERRLYLIIDSDRALRYPVGVGRAGKQ-WSGAARIEGKYRNPAWAPPAEVKR--- 96 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIE 314 + P G N M + Sbjct: 97 ------------------------------------DNPRIADVIPGGSPANPMGVAAMT 120 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI--IDLDVWLLKDTP 361 +H T P RF + GC+R+ N DL + TP Sbjct: 121 LSGGGQYAIHGTNRPGSIG---RFVSYGCIRMYNADIDDLYRRVSVGTP 166 >gi|218558848|ref|YP_002391761.1| hypothetical protein ECS88_2055 [Escherichia coli S88] gi|218365617|emb|CAR03348.1| conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Escherichia coli S88] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|256017824|ref|ZP_05431689.1| hypothetical protein ShiD9_02837 [Shigella sp. D9] Length = 311 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|195939498|ref|ZP_03084880.1| hypothetical protein EscherichcoliO157_24328 [Escherichia coli O157:H7 str. EC4024] gi|208810757|ref|ZP_03252633.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|209400843|ref|YP_002271156.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|261226496|ref|ZP_05940777.1| hypothetical protein EscherichiacoliO157_18150 [Escherichia coli O157:H7 str. FRIK2000] gi|261254697|ref|ZP_05947230.1| hypothetical protein EscherichiacoliO157EcO_02605 [Escherichia coli O157:H7 str. FRIK966] gi|208725273|gb|EDZ74980.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|209162243|gb|ACI39676.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|320189634|gb|EFW64291.1| L,D-transpeptidase ErfK [Escherichia coli O157:H7 str. EC1212] gi|320641447|gb|EFX10885.1| L,D-transpeptidase [Escherichia coli O157:H7 str. G5101] gi|320646819|gb|EFX15691.1| L,D-transpeptidase [Escherichia coli O157:H- str. 493-89] gi|320652096|gb|EFX20435.1| L,D-transpeptidase [Escherichia coli O157:H- str. H 2687] gi|320668182|gb|EFX35045.1| L,D-transpeptidase [Escherichia coli O157:H7 str. LSU-61] Length = 311 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|302390198|ref|YP_003826019.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosediminibacter oceani DSM 16646] gi|302200826|gb|ADL08396.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V +++RL G + + + AVK FQ GL +G+VD Sbjct: 160 RTLVEGSRGSDVMEVQKRLANHGFY--NGSFDGIYGSGTREAVKAFQKAKGLKATGIVDE 217 Query: 160 STLEAMNV 167 +T +A+ + Sbjct: 218 ATYKALGI 225 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 8/113 (7%) Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVD-WNSPEP-PNFIFRQDPGKINAMASTKIEFYSRN 319 L+ + M+D K + F V +++P P F + + + Sbjct: 43 VIYALERKLVVMVDGKPFKTFPVAVGTFDTPTPIGLFRITEKSKWGEGFGTRWMRLSVPW 102 Query: 320 N-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIE 369 +H T +P + F + GC+R+ N + L W+ T + ++ Sbjct: 103 GTYGIHGTNKPHSIGS---FASHGCIRMHNRHVEQLYDWVKVGTKVYIVGGVD 152 >gi|298113087|gb|ADI58676.1| hypothetical protein [Streptomyces nodosus subsp. asukaensis] Length = 555 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 11/140 (7%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 + + + + + S P A ++ Sbjct: 421 QSGSTGAQVKAVQQLLNDQGYPAGAVDG-----SFGPATKTAVAAFQAARGLSADGVVGP 475 Query: 92 GGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 W L L G S V+RL+ L + L + G+ F +AV+ +Q Sbjct: 476 RTWTALLSAGTTPSLQQGASGDGVKRLQRSLTAA--LGTTVGIDGGFGPATVTAVRNYQT 533 Query: 148 RHGLDPSGMVDSSTLEAMNV 167 GL G+V T A+ Sbjct: 534 SRGLTADGIVGPDTWAALQT 553 >gi|258539612|ref|YP_003174111.1| carboxyl-terminal protease [Lactobacillus rhamnosus Lc 705] gi|257151288|emb|CAR90260.1| Carboxyl-terminal protease [Lactobacillus rhamnosus Lc 705] Length = 480 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD SG Sbjct: 390 INATQLKPGDKGSDVKSLQQMLKAL--KIGSATVNGQYDDATQAAVKSFQEANKLDASGT 447 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 448 ADQDTLAALAQKLSDQLTK 466 >gi|229552197|ref|ZP_04440922.1| S41 family carboxy-terminal processing peptidase [Lactobacillus rhamnosus LMS2-1] gi|229314499|gb|EEN80472.1| S41 family carboxy-terminal processing peptidase [Lactobacillus rhamnosus LMS2-1] Length = 485 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD SG Sbjct: 395 INATQLKPGDKGSDVKSLQQMLKAL--KIGSATVNGQYDDATQAAVKSFQEANKLDASGT 452 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 453 ADQDTLAALAQKLSDQLTK 471 >gi|199598686|ref|ZP_03212100.1| Periplasmic protease [Lactobacillus rhamnosus HN001] gi|199590374|gb|EDY98466.1| Periplasmic protease [Lactobacillus rhamnosus HN001] Length = 480 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD SG Sbjct: 390 INATQLKPGDKGSDVKSLQQMLKAL--KIGSATVNGQYDDATQAAVKSFQEANKLDASGT 447 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 448 ADQDTLAALAQKLSDQLTK 466 >gi|333003591|gb|EGK23129.1| hypothetical protein SFK272_2677 [Shigella flexneri K-272] gi|333017508|gb|EGK36821.1| hypothetical protein SFK227_2425 [Shigella flexneri K-227] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|323187718|gb|EFZ73019.1| hypothetical protein ECRN5871_4061 [Escherichia coli RN587/1] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|320198672|gb|EFW73272.1| L,D-transpeptidase ErfK [Escherichia coli EC4100B] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|307312431|ref|ZP_07592065.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|306907602|gb|EFN38105.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|315061278|gb|ADT75605.1| L,D-transpeptidase linking LPP to murein [Escherichia coli W] gi|323378142|gb|ADX50410.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] Length = 311 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|282555169|gb|ADA82684.1| L,D-transpeptidase [Candidatus Blochmannia nearcticus] Length = 332 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 60/208 (28%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPY 243 L+ +++N L + + + +G ++ TP + I + NP Sbjct: 91 LILPNKPHSGIVINNAEMRLYYYPKKNDTVIVLPIAIGTIEHATPSQWITSIKQKKKNPI 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W IP + + M G Sbjct: 151 W-IPTKSMHDEYMKH----------------------------------GKILPTIFPAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M S + H T F +R T GC+R+R D+ +L P Sbjct: 176 PNNPMGSYALYLGKYYAI--HGTNSN--FGIGLR-VTRGCIRLR-PQDI-EYLFNIVPIG 228 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 ++ I+ ++T +++ + Sbjct: 229 TKVQFINEPIKSTIETNGMQYLEVHNPL 256 >gi|218554565|ref|YP_002387478.1| hypothetical protein ECIAI1_2070 [Escherichia coli IAI1] gi|218361333|emb|CAQ98919.1| conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Escherichia coli IAI1] Length = 310 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|117624178|ref|YP_853091.1| hypothetical protein APECO1_6023 [Escherichia coli APEC O1] gi|256022346|ref|ZP_05436211.1| hypothetical protein E4_03144 [Escherichia sp. 4_1_40B] gi|301018085|ref|ZP_07182636.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 69-1] gi|115513302|gb|ABJ01377.1| conserved protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli APEC O1] gi|300399866|gb|EFJ83404.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 69-1] gi|320657691|gb|EFX25483.1| L,D-transpeptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663374|gb|EFX30674.1| L,D-transpeptidase [Escherichia coli O55:H7 str. USDA 5905] Length = 311 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|323168887|gb|EFZ54567.1| hypothetical protein SS53G_1216 [Shigella sonnei 53G] Length = 310 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|308174184|ref|YP_003920889.1| hypothetical protein BAMF_2293 [Bacillus amyloliquefaciens DSM 7] gi|307607048|emb|CBI43419.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7] gi|328554128|gb|AEB24620.1| hypothetical protein BAMTA208_12285 [Bacillus amyloliquefaciens TA208] gi|328912519|gb|AEB64115.1| hypothetical protein LL3_02582 [Bacillus amyloliquefaciens LL3] Length = 176 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 44/165 (26%), Gaps = 57/165 (34%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G Y++VN +L V++ ++ V G+ D TP + NP Sbjct: 21 NPLPGDPYIIVNKATNALAVVKDNRIEGIYQVATGKTDDLTPEGEFTVTVKAVNP----- 75 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 Y + N + N Sbjct: 76 -----------------YYRKKN----------------------------VEGGAPENP 90 Query: 308 MASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + I F +H T L F ++GC+R++N Sbjct: 91 LGVRWIGFDARGTDGRIYGIHGTNREELIG---GFVSNGCIRMKN 132 >gi|331673538|ref|ZP_08374301.1| protein ErfK/srfK [Escherichia coli TA280] gi|331068811|gb|EGI40203.1| protein ErfK/srfK [Escherichia coli TA280] Length = 311 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|332278846|ref|ZP_08391259.1| ErfK/YbiS/YcfS/YnhG family protein [Shigella sp. D9] gi|332101198|gb|EGJ04544.1| ErfK/YbiS/YcfS/YnhG family protein [Shigella sp. D9] Length = 310 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|15802471|ref|NP_288497.1| hypothetical protein Z3150 [Escherichia coli O157:H7 EDL933] gi|15832039|ref|NP_310812.1| hypothetical protein ECs2785 [Escherichia coli O157:H7 str. Sakai] gi|189010742|ref|ZP_02809080.2| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|189403413|ref|ZP_02795306.2| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|208816755|ref|ZP_03257875.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208818653|ref|ZP_03258973.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|217329581|ref|ZP_03445660.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|254793692|ref|YP_003078529.1| hypothetical protein ECSP_2655 [Escherichia coli O157:H7 str. TW14359] gi|12516167|gb|AAG57051.1|AE005425_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13362253|dbj|BAB36208.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|188998695|gb|EDU67681.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|189360771|gb|EDU79190.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|208731098|gb|EDZ79787.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208738776|gb|EDZ86458.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209748326|gb|ACI72470.1| hypothetical protein ECs2785 [Escherichia coli] gi|209748328|gb|ACI72471.1| hypothetical protein ECs2785 [Escherichia coli] gi|209748330|gb|ACI72472.1| hypothetical protein ECs2785 [Escherichia coli] gi|217317349|gb|EEC25778.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|254593092|gb|ACT72453.1| conserved protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli O157:H7 str. TW14359] gi|326340064|gb|EGD63869.1| L,D-transpeptidase ErfK [Escherichia coli O157:H7 str. 1044] gi|326346477|gb|EGD70213.1| L,D-transpeptidase ErfK [Escherichia coli O157:H7 str. 1125] Length = 310 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|330946579|gb|EGH47586.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. pisi str. 1704B] Length = 159 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 6/65 (9%) Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNII 350 G N + K +H + + F +R + GC R+ N++ Sbjct: 1 GDPLPDVVPAGPDNPLGPFKFGLGLS-GYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVL 56 Query: 351 DLDVW 355 +L Sbjct: 57 ELADM 61 >gi|291283218|ref|YP_003500036.1| hypothetical protein G2583_2500 [Escherichia coli O55:H7 str. CB9615] gi|290763091|gb|ADD57052.1| Conserved protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli O55:H7 str. CB9615] gi|323952485|gb|EGB48358.1| ykud domain-containing protein [Escherichia coli H252] Length = 310 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|82777468|ref|YP_403817.1| hypothetical protein SDY_2243 [Shigella dysenteriae Sd197] gi|309787915|ref|ZP_07682525.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|81241616|gb|ABB62326.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308924314|gb|EFP69811.1| conserved hypothetical protein [Shigella dysenteriae 1617] gi|323936971|gb|EGB33252.1| ykud domain-containing protein [Escherichia coli E1520] Length = 310 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|325292051|ref|YP_004277915.1| hypothetical protein AGROH133_04195 [Agrobacterium sp. H13-3] gi|325059904|gb|ADY63595.1| hypothetical protein AGROH133_04195 [Agrobacterium sp. H13-3] Length = 274 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 47/211 (22%) Query: 145 FQMRHGL----DPSGMVDSS---TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 FQ R SG+ A P Q+ + + ++ Sbjct: 85 FQQRQAAMPQRPSSGVTSQRPARVQNAAVRPNAPVRTQIAPQFLPQIVSYQTTQKPGTIV 144 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 ++ P L V R V VG+ + ++ R P W P+ +I ++ Sbjct: 145 IDTPNRFLYLVMADGKARRYGVGVGKPGFE-WAGTHKVTRKAEWPSWTPPKEMISRE--- 200 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + + + G N M + + Sbjct: 201 --------------------------------ATKGHYLPAFMEGGPANPMGARAMYLG- 227 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 228 STLYRIHGTNQPWTIGSNN---SSGCIRMRN 255 >gi|325291306|ref|YP_004267487.1| Peptidoglycan-binding domain 1 protein [Syntrophobotulus glycolicus DSM 8271] gi|324966707|gb|ADY57486.1| Peptidoglycan-binding domain 1 protein [Syntrophobotulus glycolicus DSM 8271] Length = 258 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 17/147 (11%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + + E + N F+ G + ++S +T K ++ I+ Sbjct: 116 TLREGSRGASVRELQTLLSNHGFNPGPIDGIFGPRTRAAVVSFQT----SKGLSP-DGIV 170 Query: 90 SRGGW----------PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 W P L G+ SV+ L+ RL G + F + + Sbjct: 171 GPRTWAALGVNCTSSPSTKCPTLRRGSRGSSVRTLQTRLNNQGF--NPGPIDGIFGSRTQ 228 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +AV FQ L P G+V T A+ Sbjct: 229 AAVIAFQNSRCLSPDGIVGRKTWAALG 255 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV+ L+ L G + F +AV FQ GL P G+V Sbjct: 116 TLREGSRGASVRELQTLLSNHGF--NPGPIDGIFGPRTRAAVVSFQTSKGLSPDGIVGPR 173 Query: 161 TLEAMNVP 168 T A+ V Sbjct: 174 TWAALGVN 181 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ +V L+E L++ G + F ++AV FQ L P Sbjct: 4 PPTNYPTLQIGSTGPAVVHLQESLVVQGF--DPGMIDGIFGPKTQAAVIAFQSCCCLVPD 61 Query: 155 GMVDSSTLEAMNVPVDLRIRQL 176 G+V T A+ + L Sbjct: 62 GIVGPITWAALEAACPPPLDHL 83 >gi|293410342|ref|ZP_06653918.1| L,D-transpeptidase ErfK [Escherichia coli B354] gi|291470810|gb|EFF13294.1| L,D-transpeptidase ErfK [Escherichia coli B354] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|300905094|ref|ZP_07122900.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 84-1] gi|300921759|ref|ZP_07137924.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 182-1] gi|301307113|ref|ZP_07213145.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 124-1] gi|309798184|ref|ZP_07692551.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 145-7] gi|331677866|ref|ZP_08378541.1| protein ErfK/srfK [Escherichia coli H591] gi|284921978|emb|CBG35054.1| putative exported protein [Escherichia coli 042] gi|300403006|gb|EFJ86544.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 84-1] gi|300421847|gb|EFK05158.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 182-1] gi|300837679|gb|EFK65439.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 124-1] gi|308118234|gb|EFO55496.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 145-7] gi|315252446|gb|EFU32414.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 85-1] gi|331074326|gb|EGI45646.1| protein ErfK/srfK [Escherichia coli H591] Length = 311 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|20090011|ref|NP_616086.1| hypothetical protein MA1145 [Methanosarcina acetivorans C2A] gi|19914978|gb|AAM04566.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 320 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S +V++++E LII G P G F E AV+ +Q GL G++ + Sbjct: 28 RVLGRGDSGPAVKKVQEALIILGIPVPKVGADGVFGGETELAVRSYQEARGLKVDGIIGA 87 Query: 160 STLEAMN 166 T+ +++ Sbjct: 88 ETIGSLD 94 >gi|110805975|ref|YP_689495.1| hypothetical protein SFV_2062 [Shigella flexneri 5 str. 8401] gi|110615523|gb|ABF04190.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 311 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|323702591|ref|ZP_08114253.1| spore cortex-lytic enzyme [Desulfotomaculum nigrificans DSM 574] gi|323532410|gb|EGB22287.1| spore cortex-lytic enzyme [Desulfotomaculum nigrificans DSM 574] Length = 239 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V ++++RL G + L F + + +AV+ FQ +GL G+V T +A Sbjct: 44 GTSGDKVYQVQKRLKDWGYY--TGPLDGYFGSQMSAAVQKFQRYNGLTADGVVGEQTWQA 101 Query: 165 MN-VPVDLR 172 + R Sbjct: 102 LGLATPAPR 110 >gi|293415295|ref|ZP_06657938.1| hypothetical protein ECDG_01852 [Escherichia coli B185] gi|291432943|gb|EFF05922.1| hypothetical protein ECDG_01852 [Escherichia coli B185] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|198284291|ref|YP_002220612.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248812|gb|ACH84405.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 361 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 41/169 (24%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++V+IPA + N +V V V + + +RI P W +P++I Sbjct: 97 IIVDIPARRIYYFPVNDRVVYTYPVGVFLPGWKEALTDTRIIAKFKMPAWNVPKNIHA-- 154 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ F ++ W PG N M +E Sbjct: 155 ----------------------WFEKKFHMDIPWYW----------PPGPENPMGELAME 182 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++H T P +R + GC ++ N+ L + TP Sbjct: 183 TGLS-GIFIHGTYHPW--GVGMRA-SQGCFQMFPENVAQLFPMVPVGTP 227 >gi|260868641|ref|YP_003235043.1| hypothetical protein ErfK [Escherichia coli O111:H- str. 11128] gi|257764997|dbj|BAI36492.1| conserved hypothetical protein ErfK [Escherichia coli O111:H- str. 11128] gi|323177176|gb|EFZ62766.1| hypothetical protein ECOK1180_4544 [Escherichia coli 1180] gi|323948395|gb|EGB44380.1| ykud domain-containing protein [Escherichia coli H120] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|154685816|ref|YP_001420977.1| YkuD [Bacillus amyloliquefaciens FZB42] gi|154351667|gb|ABS73746.1| YkuD [Bacillus amyloliquefaciens FZB42] Length = 166 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 16/129 (12%) Query: 236 NRIMFNPY--WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + I+ N IP SII L L + + V ++ +P Sbjct: 44 HIIIPNLPDPSTIPYSIIVYIGAKKLE-----LYRLGRLIRTY---PIAVGKILTTTPTG 95 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIID 351 +I + P + + + +H T P + GC+R+ +++ + Sbjct: 96 EFYIVNRQPKPGGPFGAYWLSLSKIH-YGIHGTNNPSSIGK---AVSKGCIRMYNQDVTE 151 Query: 352 LDVWLLKDT 360 L + T Sbjct: 152 LAATVPNGT 160 >gi|320184160|gb|EFW58977.1| L,D-transpeptidase ErfK [Shigella flexneri CDC 796-83] Length = 311 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|301017423|ref|ZP_07182155.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 196-1] gi|299882723|gb|EFI90934.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 196-1] gi|323961843|gb|EGB57443.1| ykud domain-containing protein [Escherichia coli H489] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|253773068|ref|YP_003035899.1| hypothetical protein ECBD_1659 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|331652797|ref|ZP_08353803.1| protein ErfK/srfK [Escherichia coli M718] gi|253324112|gb|ACT28714.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448907|gb|ACX39329.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|315136623|dbj|BAJ43782.1| hypothetical protein ECDH1ME8569_1926 [Escherichia coli DH1] gi|331049553|gb|EGI21624.1| protein ErfK/srfK [Escherichia coli M718] Length = 311 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|284034921|ref|YP_003384852.1| cell wall hydrolase/autolysin [Kribbella flavida DSM 17836] gi|283814214|gb|ADB36053.1| cell wall hydrolase/autolysin [Kribbella flavida DSM 17836] Length = 377 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R +G+S +V + +L G L P G +D AV+ FQ + GL G+V Sbjct: 7 ARIYRIGDSGEAVAEIIGKLQRLGLLAP--GPRSVYDEETAHAVRGFQQQRGLMIDGIVG 64 Query: 159 SSTLEAMN 166 T A++ Sbjct: 65 PQTYRAID 72 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 13/100 (13%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPS 127 ++ I+ + + LG+ V L+ +L G Sbjct: 53 QQRGLMIDGIVGPQTYRAIDDARWRLGDRLLTYVVSHPLTGDDVVALQAKLQELGF--AV 110 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + F + AV FQ GL G ST +A+ Sbjct: 111 ARVDGIFGPDTQRAVTEFQRNMGLPADGTCGPSTFKALQR 150 >gi|215487204|ref|YP_002329635.1| hypothetical protein E2348C_2123 [Escherichia coli O127:H6 str. E2348/69] gi|312967213|ref|ZP_07781429.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|215265276|emb|CAS09671.1| conserved protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli O127:H6 str. E2348/69] gi|312288021|gb|EFR15925.1| conserved hypothetical protein [Escherichia coli 2362-75] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|300951628|ref|ZP_07165454.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 116-1] gi|300449132|gb|EFK12752.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 116-1] Length = 311 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|229491220|ref|ZP_04385048.1| peptidoglycan-binding domain 1 protein [Rhodococcus erythropolis SK121] gi|229321958|gb|EEN87751.1| peptidoglycan-binding domain 1 protein [Rhodococcus erythropolis SK121] Length = 396 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 14/79 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG--------------LSVAFDAYVESAVKLFQM 147 L G+ +V +R L G L FD ++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLTKLGYLHHGTSGIRRESADGAHWVAPDAIFDHQLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAMN 166 + GL G+V +T ++ Sbjct: 64 QRGLLVDGIVGPATYRSLR 82 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 15/124 (12%) Query: 48 VNDRFDNFLARVDMGIDSDIPII-----SKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + FD+ L ++ T +A Y+ + +R +L Sbjct: 46 PDAIFDHQLDSAVRAFQQQRGLLVDGIVGPATYRSLREA--SYR-LGARTLIYQLSAPLY 102 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V L+ +L G + F ++ FQ G+ G+ TL Sbjct: 103 -----GDDVAALQAKLQDLGFYA--GRVDGFFGPQTHESLSSFQREIGIAADGICGPQTL 155 Query: 163 EAMN 166 ++ Sbjct: 156 RSLE 159 >gi|16129931|ref|NP_416494.1| L,D-transpeptidase linking Lpp to murein [Escherichia coli str. K-12 substr. MG1655] gi|89108811|ref|AP_002591.1| conserved hypothetical protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli str. K-12 substr. W3110] gi|170081622|ref|YP_001730942.1| hypothetical protein ECDH10B_2134 [Escherichia coli str. K-12 substr. DH10B] gi|218690048|ref|YP_002398260.1| hypothetical protein ECED1_2326 [Escherichia coli ED1a] gi|238901184|ref|YP_002926980.1| hypothetical protein BWG_1784 [Escherichia coli BW2952] gi|254161987|ref|YP_003045095.1| hypothetical protein ECB_01899 [Escherichia coli B str. REL606] gi|1175850|sp|P39176|ERFK_ECOLI RecName: Full=Probable L,D-transpeptidase ErfK/SrfK; Flags: Precursor gi|1008488|gb|AAA78909.1| unknown [Escherichia coli str. K-12 substr. W3110] gi|1736651|dbj|BAA15807.1| conserved hypothetical protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli str. K12 substr. W3110] gi|1788299|gb|AAC75051.1| L,D-transpeptidase linking Lpp to murein [Escherichia coli str. K-12 substr. MG1655] gi|169889457|gb|ACB03164.1| conserved protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli str. K-12 substr. DH10B] gi|218427612|emb|CAR08388.1| conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Escherichia coli ED1a] gi|238860592|gb|ACR62590.1| conserved protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli BW2952] gi|242377646|emb|CAQ32405.1| L,D-transpeptidase ErfK [Escherichia coli BL21(DE3)] gi|253973888|gb|ACT39559.1| conserved hypothetical protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli B str. REL606] gi|253978082|gb|ACT43752.1| conserved protein with NAD(P)-binding Rossmann-fold domain [Escherichia coli BL21(DE3)] gi|332093060|gb|EGI98124.1| hypothetical protein SB521682_0999 [Shigella boydii 5216-82] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|167589013|ref|ZP_02381401.1| putative phage-encoded peptidoglycan binding protein [Burkholderia ubonensis Bu] Length = 277 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LG+ V L+ RLI +G + ++ +DA E+AV Q + GL G+ Sbjct: 2 KTRRLGDHGDDVGLLQRRLIRAGY---AVQVTHIYDAATEAAVIALQRKTGLVDDGVAGP 58 Query: 160 STLEAMNVPVDLRIRQLQVNLMR 182 T A+ +L R Sbjct: 59 KTYAALATGQRDPQHLALADLER 81 >gi|82543728|ref|YP_407675.1| hypothetical protein SBO_1213 [Shigella boydii Sb227] gi|81245139|gb|ABB65847.1| conserved hypothetical protein [Shigella boydii Sb227] gi|332096606|gb|EGJ01600.1| hypothetical protein SB359474_1352 [Shigella boydii 3594-74] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|52080005|ref|YP_078796.1| peptidoglycan-binding protein YkuD [Bacillus licheniformis ATCC 14580] gi|52785379|ref|YP_091208.1| YkuD [Bacillus licheniformis ATCC 14580] gi|319646218|ref|ZP_08000448.1| spore protein ykuD [Bacillus sp. BT1B_CT2] gi|81385713|sp|Q65K99|YKUD_BACLD RecName: Full=Putative L,D-transpeptidase YkuD; AltName: Full=Spore protein YkuD homolog gi|52003216|gb|AAU23158.1| Peptidoglycan-binding protein YkuD [Bacillus licheniformis ATCC 14580] gi|52347881|gb|AAU40515.1| YkuD [Bacillus licheniformis ATCC 14580] gi|317391968|gb|EFV72765.1| spore protein ykuD [Bacillus sp. BT1B_CT2] Length = 165 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 50/151 (33%), Gaps = 10/151 (6%) Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + + + + + + P P +I + ++L + + + + + Sbjct: 17 ADFRTTRQALLQANPGLNGGQVSAGQSIIIPGIRNPDTIPYRIAVSLNGRTLRLYERDRL 76 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 K + V ++ +P I + P + + ++ +H T P Sbjct: 77 V----KTYPIAVGKILTQTPRGEFVIVNRQPNPGGPFGAYWLSLSKQH-YGIHGTNNPSS 131 Query: 332 FNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + GC+R+ N +++L + T Sbjct: 132 IGK---AVSRGCIRMHNRDVLELASIVPNGT 159 >gi|262043472|ref|ZP_06016595.1| LysM domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039214|gb|EEW40362.1| LysM domain protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 300 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 44/172 (25%) Query: 196 VLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 87 IVINVAEMRLYYYPPLGNSVEVLPIGIGQAGRETPRNWVTAVERKQEGPTW-VPTANTRR 145 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E PG N M I Sbjct: 146 E----------------------------------YAKEGKTLPALVPPGPDNPMGLYAI 171 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 H T F +R + GC+R+RN D +L + P +R Sbjct: 172 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKFLFDNVPVGTR 216 >gi|17229661|ref|NP_486209.1| hypothetical protein alr2169 [Nostoc sp. PCC 7120] gi|17131260|dbj|BAB73868.1| alr2169 [Nostoc sp. PCC 7120] Length = 160 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 87 DILSRGGWPELPIRP------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 I+ W L L G+ V+ L++RL +G + + F E+ Sbjct: 70 GIVGYKTWQALYEGRVIDLPILKYGSQGELVKALQQRLQNAGYY--TGLVDGDFSLVTEA 127 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 VK FQ+R+ L G+V T ++ Sbjct: 128 GVKSFQLRNNLKVDGIVGDRTWAVLSNTP 156 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L+ L S + D+ V LFQ R + G+V Sbjct: 18 TLKQGDTGEVVKELQRLLRS--YYCYSGPIDGVLDSETVGGVILFQHRVFIPEDGIVGYK 75 Query: 161 TLEAM 165 T +A+ Sbjct: 76 TWQAL 80 >gi|323940709|gb|EGB36899.1| ykud domain-containing protein [Escherichia coli E482] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|197123397|ref|YP_002135348.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter sp. K] gi|196173246|gb|ACG74219.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter sp. K] Length = 282 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 52/203 (25%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVI 220 L+A P V ++ +L + V+VN+ L + G L + Sbjct: 59 LDAFVPPPG------AVAIVPTAWILPAAAEVGTVVVNLSEMRLYYLPPGPGALLSFPIG 112 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 V TP+ + + + +P W +I ++D Sbjct: 113 VAVEAGATPLGVLTVEQKLVSPTWYPTPAIRRED-------------------------- 146 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P PG N + S + +H T P F R + Sbjct: 147 -------------PELPAAVPPGPENPLGSHALRLSVP-TLLIHGTHRP--FGVGRR-VS 189 Query: 341 SGCVRV--RNIIDLDVWLLKDTP 361 GC+R+ +I L + TP Sbjct: 190 HGCIRLYPEDIPLLYRAVRVGTP 212 >gi|226309507|ref|YP_002769469.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus erythropolis PR4] gi|226188626|dbj|BAH36730.1| putative N-acetylmuramoyl-L-alanine amidase [Rhodococcus erythropolis PR4] Length = 396 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 14/79 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG--------------LSVAFDAYVESAVKLFQM 147 L G+ +V +R L G L FD ++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLTKLGYLHHGTSGIRRESADGAHWVAPDAIFDHQLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAMN 166 + GL G+V +T ++ Sbjct: 64 QRGLLVDGIVGPATYRSLR 82 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 15/124 (12%) Query: 48 VNDRFDNFLARVDMGIDSDIPII-----SKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + FD+ L ++ T +A Y+ + +R +L Sbjct: 46 PDAIFDHQLDSAVRAFQQQRGLLVDGIVGPATYRSLREA--SYR-LGARTLIYQLSAPLY 102 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V L+ +L G + F ++ FQ G+ G+ TL Sbjct: 103 -----GDDVAALQAKLQDLGFYA--GRVDGFFGPQTHESLSSFQREIGIAADGICGPQTL 155 Query: 163 EAMN 166 ++ Sbjct: 156 RSLE 159 >gi|154686655|ref|YP_001421816.1| YqjB [Bacillus amyloliquefaciens FZB42] gi|154352506|gb|ABS74585.1| YqjB [Bacillus amyloliquefaciens FZB42] Length = 176 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 57/165 (34%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G Y++VN +L V++ ++ V G+ D TP + NP Sbjct: 21 NPLPGDPYIIVNKATNALAVVKDNRIQGIYQVATGKTDDLTPEGEFTVTVKAVNP----- 75 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 Y + N + N Sbjct: 76 -----------------YYRKKN----------------------------VEGGAPENP 90 Query: 308 MASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRN 348 + I F ++ +H T L F ++GC+R++N Sbjct: 91 LGVRWIGFDAKGTDGRIYGIHGTNREELIG---GFVSNGCIRMKN 132 >gi|75907469|ref|YP_321765.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75701194|gb|ABA20870.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 508 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 10/152 (6%) Query: 24 LSLVEKPIHASVLDEIINESY--HSIVNDRFDNFLARVDMGIDSDIPIISKETI-AQTEK 80 L L + + S L + + + F + + + I + + +QT + Sbjct: 142 LRLGSRGVAVSQLQQNLRRLRYFNGPNTGYFGSETQQAVIRFQRANRIGADGIVGSQTAQ 201 Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AI + G + L G++ +V RL++RL G P+ + F + Sbjct: 202 AIRN-----AATGSLGVKSPVLSEGSTGQAVTRLQQRLRQLGYFSPNPTGN--FRSITRD 254 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 AV FQ GL +G+V+ T A+ + Sbjct: 255 AVMAFQRNAGLPITGVVNQQTWNALGGVAQVP 286 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ +V+ +++RL G + L FD Y ++V FQ + L+P+G VDS T Sbjct: 365 LTVGDRGNNVRAVQQRLTQLGFF--TGSLDGYFDEYTRASVASFQQYYQLNPTGNVDSQT 422 Query: 162 LEAMNVPVDLRIRQ 175 +A+N+ Sbjct: 423 WQALNINGSPIAEI 436 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 11/161 (6%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 L + + + + + + F S I +A A Sbjct: 211 LGVKSPVLSEGSTGQAVTRLQQRL--RQLGYFSPNPTGNFRS---ITRDAVMAFQRNAGL 265 Query: 84 FYQDILSRGGWPE---LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 ++++ W + P G S+ V+ L++RL G + + S+ Sbjct: 266 PITGVVNQQTWNALGGVAQVPNRPGLSTPQVRDLQQRLRDLGYFNGNPTGSI--GVMTRD 323 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNL 180 A+ FQ + L G+ D L+A++ + R Q NL Sbjct: 324 AIVRFQRDYRLTADGIADVQILQAVSRVWEDRYANQPNRNL 364 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 T++A+ + G + L LG+ V+V +L++ L + + F + Sbjct: 121 TQRALQRACRSATPG---AINSSDLRLGSRGVAVSQLQQNLRRLRYF--NGPNTGYFGSE 175 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + AV FQ + + G+V S T +A+ Sbjct: 176 TQQAVIRFQRANRIGADGIVGSQTAQAIR 204 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 20/117 (17%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G++ V ++ L G + ++ F + S V FQ + L G+V T Sbjct: 65 KVGSTGSEVAEIQRCLKKLGFF--NGPVNGRFASITRSGVIGFQRANRLAADGVVGGGTQ 122 Query: 163 EAMNV------------------PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 A+ + + QLQ NL R++ G Sbjct: 123 RALQRACRSATPGAINSSDLRLGSRGVAVSQLQQNLRRLRYFNGPNTGYFGSETQQA 179 >gi|332755732|gb|EGJ86094.1| hypothetical protein SF434370_2275 [Shigella flexneri 4343-70] gi|333002778|gb|EGK22337.1| hypothetical protein SFVA6_2737 [Shigella flexneri VA-6] gi|333002969|gb|EGK22524.1| hypothetical protein SFK218_2917 [Shigella flexneri K-218] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|323140555|ref|ZP_08075482.1| NlpC/P60 family protein [Phascolarctobacterium sp. YIT 12067] gi|322415007|gb|EFY05799.1| NlpC/P60 family protein [Phascolarctobacterium sp. YIT 12067] Length = 210 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G++ V +++RL+ + F E AVK FQ GL+ G+V S+ Sbjct: 16 SFQRGDNGQEVVAIQKRLLELSY--SINNIDGDFGPETERAVKNFQADKGLEVDGVVGSA 73 Query: 161 TLEAM--NVPVDLRIRQLQVNLMR 182 T A+ R + N++R Sbjct: 74 TYRALMNREMPPNRSNSVVRNVLR 97 >gi|312946611|gb|ADR27438.1| hypothetical protein NRG857_10115 [Escherichia coli O83:H1 str. NRG 857C] gi|324008923|gb|EGB78142.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 57-2] Length = 308 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|258513404|ref|YP_003189626.1| spore cortex-lytic enzyme [Desulfotomaculum acetoxidans DSM 771] gi|257777109|gb|ACV61003.1| spore cortex-lytic enzyme [Desulfotomaculum acetoxidans DSM 771] Length = 242 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G+S V ++++RL G + F AV+ FQ +GL G+V T Sbjct: 41 LHWGSSGYRVTKIQQRLNWWGYY--EGPVDGLFGTKTSKAVRKFQGYNGLSKDGVVGRQT 98 Query: 162 LEAMN 166 L A+ Sbjct: 99 LTALG 103 >gi|222033754|emb|CAP76495.1| Protein erfK/srfK [Escherichia coli LF82] Length = 307 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|223985219|ref|ZP_03635303.1| hypothetical protein HOLDEFILI_02609 [Holdemania filiformis DSM 12042] gi|223962797|gb|EEF67225.1| hypothetical protein HOLDEFILI_02609 [Holdemania filiformis DSM 12042] Length = 639 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P P L LG+ +V ++ L + G+ + F A E+AV+ FQ R G Sbjct: 523 PAYPGTSLRLGSRGENVSIMQMALNVINQGWGN-SNQLVVDGIFGAATEAAVRAFQTRVG 581 Query: 151 LDPSGMVDSSTLEAM----NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 L G++ +T A+ +V + + + N + L E L Y + N Sbjct: 582 LTADGIIGRNTWGAISEQYSVATNNAVALSEQNFELYRFLYENYTSLMYAIDN 634 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL--IISGD--LDPSKGLSVAFDAYVESAVKLFQMRHG 150 P L G S SV ++ +L I + P+ + F E+AVK FQ + Sbjct: 333 GSFPGLNLQRGVRSDSVAIIQNQLNRIAVNYPNIPPTYPIDGIFGEGTENAVKAFQRQFS 392 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V T ++ Sbjct: 393 LTADGIVGKGTWYKIS 408 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 18/191 (9%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R L G+ +V VQ ++ L P+ + +F A +AV FQ GL Sbjct: 434 PGRALRQGDRNVYVQEIQFYLQKIALFTSRVPTVKIDSSFGASTRNAVVAFQKLAGLTAD 493 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL--EQKMGLRYVLVNIPAASLEAVENGK 212 G+V T + + + +I ++G R V+I +L + G Sbjct: 494 GIVGRQTWDILVRAYRETQSIVPPISQKIPAYPGTSLRLGSRGENVSIMQMALNVINQGW 553 Query: 213 VGLRSTVIVGRVDRQTP----ILHSRI----NRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 V+ G T +R+ + I+ W + ++ + Sbjct: 554 GNSNQLVVDGIFGAATEAAVRAFQTRVGLTADGIIGRNTWG-----AISEQYSVATNNAV 608 Query: 265 YLKDNNIHMID 275 L + N + Sbjct: 609 ALSEQNFELYR 619 >gi|218695599|ref|YP_002403266.1| hypothetical protein EC55989_2224 [Escherichia coli 55989] gi|218352331|emb|CAU98097.1| conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Escherichia coli 55989] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|194431569|ref|ZP_03063861.1| protein ErfK/srfK [Shigella dysenteriae 1012] gi|194420394|gb|EDX36471.1| protein ErfK/srfK [Shigella dysenteriae 1012] gi|332091571|gb|EGI96652.1| hypothetical protein SD15574_2277 [Shigella dysenteriae 155-74] Length = 307 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|170019668|ref|YP_001724622.1| hypothetical protein EcolC_1638 [Escherichia coli ATCC 8739] gi|169754596|gb|ACA77295.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] Length = 307 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|300900128|ref|ZP_07118321.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 198-1] gi|300955303|ref|ZP_07167688.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 175-1] gi|307138653|ref|ZP_07498009.1| hypothetical protein EcolH7_11072 [Escherichia coli H736] gi|331642606|ref|ZP_08343741.1| protein ErfK/srfK [Escherichia coli H736] gi|300317782|gb|EFJ67566.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 175-1] gi|300356342|gb|EFJ72212.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 198-1] gi|331039404|gb|EGI11624.1| protein ErfK/srfK [Escherichia coli H736] Length = 311 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|125974900|ref|YP_001038810.1| cell wall hydrolase, SleB [Clostridium thermocellum ATCC 27405] gi|256003843|ref|ZP_05428830.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 2360] gi|281418634|ref|ZP_06249653.1| spore cortex-lytic enzyme [Clostridium thermocellum JW20] gi|125715125|gb|ABN53617.1| cell wall hydrolase, SleB [Clostridium thermocellum ATCC 27405] gi|255992181|gb|EEU02276.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 2360] gi|281407718|gb|EFB37977.1| spore cortex-lytic enzyme [Clostridium thermocellum JW20] gi|316939111|gb|ADU73145.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 1313] Length = 233 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L + V RL++RL D ++ +D AV+ FQ + L +G+ Sbjct: 34 TERLAPNMQNEDVVRLQQRLKNWEYYD--GKITGVYDFKTYLAVRDFQKTYNLPVTGIAG 91 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMR 182 TL AM + R +++ R Sbjct: 92 EETLAAMGLTTLSRWSEVRAQSSR 115 >gi|326628250|gb|EGE34593.1| Putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 327 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 116 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 174 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 175 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 200 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 201 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 248 >gi|300818593|ref|ZP_07098801.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 107-1] gi|300528765|gb|EFK49827.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 107-1] gi|324018779|gb|EGB87998.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 117-3] Length = 311 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|316933153|ref|YP_004108135.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315600867|gb|ADU43402.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 238 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 53/187 (28%), Gaps = 46/187 (24%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +A +L L R + ++V+ P L V G +R + VG Sbjct: 63 QAAPQDDGEAAAELPARLKRQIVTYPSREAPGTIIVDTPNTYLYYVLGGGRAIRYGIGVG 122 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R D T + R P W P +I + YL + Sbjct: 123 R-DGFTWSGVKSVTRKAEWPDWTPPPEMIARQP---------YLPRH------------- 159 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETS 341 G N + + + + Y +H T P +S Sbjct: 160 -----------------MAGGPGNPLGARAMYL--GDTIYRIHGTNAPSTIGT---HVSS 197 Query: 342 GCVRVRN 348 GC+R+ N Sbjct: 198 GCIRLTN 204 >gi|188493557|ref|ZP_03000827.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|193071626|ref|ZP_03052531.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] gi|312973798|ref|ZP_07787970.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|331683655|ref|ZP_08384251.1| protein ErfK/srfK [Escherichia coli H299] gi|188488756|gb|EDU63859.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|192955057|gb|EDV85555.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] gi|310332393|gb|EFP99628.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|315618035|gb|EFU98627.1| conserved hypothetical protein [Escherichia coli 3431] gi|323972855|gb|EGB68054.1| ykud domain-containing protein [Escherichia coli TA007] gi|331078607|gb|EGI49809.1| protein ErfK/srfK [Escherichia coli H299] gi|332343751|gb|AEE57085.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|260855960|ref|YP_003229851.1| hypothetical protein ErfK [Escherichia coli O26:H11 str. 11368] gi|257754609|dbj|BAI26111.1| conserved hypothetical protein ErfK [Escherichia coli O26:H11 str. 11368] gi|323155648|gb|EFZ41821.1| hypothetical protein ECEPECA14_2469 [Escherichia coli EPECa14] Length = 314 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|168242080|ref|ZP_02667012.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449450|ref|YP_002046063.1| hypothetical protein SeHA_C2237 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407754|gb|ACF67973.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338621|gb|EDZ25385.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|320086448|emb|CBY96219.1| Protein erfK/srfK Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 309 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|204929258|ref|ZP_03220401.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321802|gb|EDZ07001.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 309 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|168238749|ref|ZP_02663807.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737599|ref|YP_002115048.1| hypothetical protein SeSA_A2184 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713101|gb|ACF92322.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288428|gb|EDY27809.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 309 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|56413081|ref|YP_150156.1| hypothetical protein SPA0856 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168229327|ref|ZP_02654385.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168466336|ref|ZP_02700206.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446202|ref|YP_002041282.1| hypothetical protein SNSL254_A2191 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194469136|ref|ZP_03075120.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248966|ref|YP_002146972.1| hypothetical protein SeAg_B2137 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362005|ref|YP_002141642.1| hypothetical protein SSPA0801 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387045|ref|ZP_03213657.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|56127338|gb|AAV76844.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404865|gb|ACF65087.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194455500|gb|EDX44339.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631209|gb|EDX49769.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093482|emb|CAR58942.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212669|gb|ACH50066.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199604143|gb|EDZ02688.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205335580|gb|EDZ22344.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|322613720|gb|EFY10660.1| hypothetical protein SEEM315_03295 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620290|gb|EFY17159.1| hypothetical protein SEEM971_18458 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623336|gb|EFY20177.1| hypothetical protein SEEM973_19208 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630541|gb|EFY27310.1| hypothetical protein SEEM974_07076 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632782|gb|EFY29527.1| hypothetical protein SEEM201_07248 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638885|gb|EFY35579.1| hypothetical protein SEEM202_11294 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640349|gb|EFY37007.1| hypothetical protein SEEM954_18691 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647201|gb|EFY43700.1| hypothetical protein SEEM054_01532 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649026|gb|EFY45469.1| hypothetical protein SEEM675_20213 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322661040|gb|EFY57269.1| hypothetical protein SEEM19N_03749 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663019|gb|EFY59226.1| hypothetical protein SEEM801_19632 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668464|gb|EFY64619.1| hypothetical protein SEEM507_16920 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673400|gb|EFY69503.1| hypothetical protein SEEM877_01775 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679187|gb|EFY75241.1| hypothetical protein SEEM867_07101 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683281|gb|EFY79296.1| hypothetical protein SEEM180_15699 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685849|gb|EFY81839.1| hypothetical protein SEEM600_00035 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195135|gb|EFZ80316.1| hypothetical protein SEEM581_00005 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198703|gb|EFZ83803.1| hypothetical protein SEEM501_18738 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204202|gb|EFZ89212.1| hypothetical protein SEEM460_08971 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209268|gb|EFZ94204.1| hypothetical protein SEEM020_14561 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210615|gb|EFZ95497.1| hypothetical protein SEEM6152_15935 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216075|gb|EGA00805.1| hypothetical protein SEEM0077_16345 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223016|gb|EGA07362.1| hypothetical protein SEEM0047_06993 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223680|gb|EGA07987.1| hypothetical protein SEEM0055_18261 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231286|gb|EGA15400.1| hypothetical protein SEEM0052_00482 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232622|gb|EGA16719.1| hypothetical protein SEEM3312_18026 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240935|gb|EGA24975.1| hypothetical protein SEEM5258_20464 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323246752|gb|EGA30723.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251118|gb|EGA34992.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254887|gb|EGA38682.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260921|gb|EGA44519.1| hypothetical protein SEEM8284_11098 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266272|gb|EGA49761.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271415|gb|EGA54837.1| L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 309 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|159901703|ref|YP_001547949.1| peptidoglycan binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894742|gb|ABX07821.1| Peptidoglycan-binding domain 1 protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GN V+ L+ L I F +AVK FQ R GL G+V + Sbjct: 35 TLSKGNRGTDVKALQYLLAI--------DADGVFGDATVTAVKRFQGRKGLTADGIVGPA 86 Query: 161 TLEAMNVPVDL 171 T +A+ V Sbjct: 87 TWDALTETVRP 97 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 20/159 (12%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L +G + + ++ + + + I + Sbjct: 9 FIFLLLVGFLVSSQSSAHAIAGAFFHTLSKGN--------RGTDVKALQYLLAIDADGVF 60 Query: 76 A-QTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 T A+ +Q I+ W L + G+S +V+ ++ L Sbjct: 61 GDATVTAVKRFQGRKGLTADGIVGPATWDAL-TETVRPGDSGNAVKAIQTELNAKH--KA 117 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F A E AVK FQ G+ G+V S+T + + Sbjct: 118 GLTVDGKFGAGTEQAVKQFQRHVGITADGIVGSTTWKQL 156 >gi|90419954|ref|ZP_01227863.1| ErfK/YbiS/YcfS/YhnG family protein [Aurantimonas manganoxydans SI85-9A1] gi|90335995|gb|EAS49743.1| ErfK/YbiS/YcfS/YhnG family protein [Aurantimonas manganoxydans SI85-9A1] Length = 291 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 83/288 (28%), Gaps = 59/288 (20%) Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 +A Y+ + P+L R L ++ V R +R SG + + ++ A Sbjct: 25 QAQERYRSLPPVEIAPDLADRWLLQLSTGDGVARSYQRAAASGVVLGGRRVAQPPSAGTR 84 Query: 140 SAVK------LFQMRHGLDPSGM---VDSSTLEAMNVPVDLRIRQLQVNL-----MRIKK 185 V+ Q R G+ T A V + NL + + Sbjct: 85 VVVQPGYAQPRMQQRVRGQAPGVRPGYLPGTRSAAPVTGQQQAALATRNLPAPNAVDPQF 144 Query: 186 LLEQKM-----GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 L + ++V+ A L V R V VG+ I R Sbjct: 145 LPQTVPYSGKEAPGTIVVDTRAKFLYHVGRDGTARRYGVGVGKPG-FGWKGRHPITRKAE 203 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W P+ +I ++ + Sbjct: 204 WPGWTPPKEMIARE-----------------------------------RKKGRILPAHM 228 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G+ N + + + +H T +P R +SGC+R+RN Sbjct: 229 KGGEANPLGARALYLG-STLYRIHGTNQPWTIG---RAVSSGCIRMRN 272 >gi|20807586|ref|NP_622757.1| sporulation protein and related proteins [Thermoanaerobacter tengcongensis MB4] gi|20516125|gb|AAM24361.1| sporulation protein and related proteins [Thermoanaerobacter tengcongensis MB4] Length = 780 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 18/139 (12%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 +S G + + L G V+ L++ L G + F AV FQ Sbjct: 225 ISNGDGNAIFNKVLKYGMIGEEVKLLQQYLNKLGF--DAGVPDGIFGGKTRQAVINFQKS 282 Query: 149 HGLDPSGMVDSSTLEAMNV----------------PVDLRIRQLQVNLMRIKKLLEQKMG 192 L+ G+V T +A+ P + + Q+Q ++L G Sbjct: 283 ANLEADGIVGPMTWQALISRLNVTLPSRGDVNRDNPQNQKEDQIQFPTPFTRELKGGLQG 342 Query: 193 LRYVLVNIPAASLEAVENG 211 L+ + L+ + Sbjct: 343 DDVKLLQGMLSELKYYDGD 361 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ L+ L G F ++AV FQ +GL G+V Sbjct: 127 SRTLRYGMQGEDVKFLQSILNKLGF--DVGTPDGIFGFKTQNAVVQFQKANGLLADGIVG 184 Query: 159 SSTLEAMNVPVDLR 172 +T + + V+ Sbjct: 185 PATQKVLLQKVNAP 198 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V++L+E L G S F +A+ FQ L P G+ ST Sbjct: 29 LKYGMRSPEVRKLQENLNRLGYFVTSTPTD-YFGPATLNALIKFQKDSNLVPDGIYGPST 87 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 88/251 (35%), Gaps = 33/251 (13%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R L G V+ L+ L D ++ +D +AV+ FQ + L+P Sbjct: 328 FPTPFTRELKGGLQGDDVKLLQGMLSELKYYD--GDVTGTYDDVTSNAVRSFQQYYSLNP 385 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +G+ D TL+ + VD +++ ++ ++ K +G+ A + Sbjct: 386 TGIADVDTLKKLLE-VDAQVKAVKGFYVQGKGGYGHGVGMTQFGAKGMAEQGFKYDEIIK 444 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM------------------ 255 + V + +VD + +I+ + + I S + Sbjct: 445 YYYTGVDINKVDTSNVNVKVKISLDVTSQDIKITSSQPYNVIYKVKDDSTGQIIEKQETF 504 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN-----FIFRQDPGKINAMAS 310 + YL NI + + + E+ VD P N ++ + P + Sbjct: 505 LPDSVTSINYLD-GNILIANSQSPEI-RTSVDMVKIVPTNDGVLFYVNKARPYE----GE 558 Query: 311 TKIEFYSRNNT 321 +I + + N+ Sbjct: 559 FRI-YPNPNSI 568 >gi|90425500|ref|YP_533870.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90107514|gb|ABD89551.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 253 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 50/186 (26%), Gaps = 46/186 (24%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A++ + R + V+V+ L V +R V VGR Sbjct: 52 AIDDSAADEGATVPEQFKRAVVNYPNREAAGTVIVDTANTYLYYVLGQNRAIRYGVGVGR 111 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 T I R P W P +I + Sbjct: 112 EG-FTWAGVQTITRKSEWPDWHPPAEMIARQ----------------------------- 141 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSG 342 P G N + + + S + Y +H T +P F +SG Sbjct: 142 ----------PYLPRFMAGGPGNPLGARAMYLGS--SVYRIHGTNDPSTIGK---FVSSG 186 Query: 343 CVRVRN 348 C+R+ N Sbjct: 187 CIRLTN 192 >gi|323172571|gb|EFZ58205.1| hypothetical protein ECLT68_2746 [Escherichia coli LT-68] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|210622308|ref|ZP_03293077.1| hypothetical protein CLOHIR_01025 [Clostridium hiranonis DSM 13275] gi|210154296|gb|EEA85302.1| hypothetical protein CLOHIR_01025 [Clostridium hiranonis DSM 13275] Length = 601 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 41/165 (24%), Gaps = 57/165 (34%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++VN L EN K+ + V G+ TP +++ + N Sbjct: 36 IIVNTKYNKLSFYENDKLVKKFNVASGKPSTPTPTGKTKVANKIVNR------------- 82 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIE 314 P Y I G N + + I Sbjct: 83 -------PYY--SGGI-----------------------------PGGHPNNPLGNRWIG 104 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 + +H + + GC+R+ N WL Sbjct: 105 IFGGGTYAIHGNNKESSIGK---HVSGGCIRMHNAE--IRWLFPQ 144 >gi|90418751|ref|ZP_01226662.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Aurantimonas manganoxydans SI85-9A1] gi|90336831|gb|EAS50536.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Aurantimonas manganoxydans SI85-9A1] Length = 172 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 44/161 (27%), Gaps = 46/161 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V L V G L + VG+ Q S +++ +P W S+ Q+ Sbjct: 44 IIVKTGERKLYLVTGGGRALVYDIAVGKPSEQ-WFGKSWVSKKREHPTWTPTPSMRQR-- 100 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P PG N + I Sbjct: 101 -------------------------------------NPRLPQSIGPGPKNPLGERAINL 123 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDV 354 +H T P + ++GC R+RN DL Sbjct: 124 GWG-AYRIHGTNSPNSIGS---AASAGCFRMRNADVKDLFE 160 >gi|310818105|ref|YP_003950463.1| ErfK/YbiS/YcfS/YnhG family protein [Stigmatella aurantiaca DW4/3-1] gi|309391177|gb|ADO68636.1| ErfK/YbiS/YcfS/YnhG family protein [Stigmatella aurantiaca DW4/3-1] Length = 289 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 86/311 (27%), Gaps = 79/311 (25%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-----IRPLHLGNSSVSV 111 + + + S+ P+ + G P L + G V Sbjct: 6 SSLRRPMSSNSPVPPPTAASALRNKRFS--------GQPSLVDVLSGKGTIGPGARGTGV 57 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-----GLDPSGMVDSSTLEAMN 166 + L+E L+ G G AF AV+ FQ+ + +G VD++TL+A++ Sbjct: 58 RALQEALLAMGF-SLPGGADGAFGKQSAKAVRNFQVHAQSAFPNVKATGGVDAATLQALD 116 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 L N+P +G V+V + + Sbjct: 117 A-------------------LAPAPKQTGQSQNLPVPR----YDGTPV---RVVVVKNEH 150 Query: 227 QTPILHS--RINRIMFNPYWV--IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 +T + + ++ I N P K + L + Y + G Sbjct: 151 RTFLFDAQGQLQGIFGNAVGANSSPTDKGLKQVSGKLGRAEAYALGQKL----WGGPVYG 206 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +D + + + +H T P + G Sbjct: 207 PRLIDLSWADGSR-----------------------SGEELHGTNAPDKLGED---VSHG 240 Query: 343 CVRVRNIIDLD 353 C+R N + Sbjct: 241 CIRHGNTDIIA 251 >gi|304407599|ref|ZP_07389251.1| cell wall hydrolase SleB [Paenibacillus curdlanolyticus YK9] gi|304343550|gb|EFM09392.1| cell wall hydrolase SleB [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 6/96 (6%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + +G+ V L++RL + G L + + AV+ FQ + +G+V + Sbjct: 33 TMSVGSKGPQVVDLQQRLRMLGYLSSEA--DGNYGEGTKDAVQRFQKGAAIAQTGVVGQT 90 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 T+ A+ R + + + + G +Y Sbjct: 91 TMHALKKVTVSRTDLSML----ARIVYSEARGEQYD 122 >gi|268319577|ref|YP_003293233.1| carboxy-terminal processing protease [Lactobacillus johnsonii FI9785] gi|262397952|emb|CAX66966.1| carboxy-terminal processing protease [Lactobacillus johnsonii FI9785] Length = 483 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G + FD ++AV FQ HGL G+V+ Sbjct: 394 LKKSMTGVDVATLQQYLTALGYMPKYVT--GVFDDETKNAVIEFQKAHGLTADGIVNGQV 451 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V +++ L + L + M Sbjct: 452 QAQLYLAVAQKLQDDNSALKKAMSLNLKDMED 483 >gi|322653933|gb|EFY50257.1| hypothetical protein SEEM965_19663 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|323245646|gb|EGA29641.1| hypothetical protein SEEM1156_11922 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 246 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 35 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 93 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 94 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 119 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 120 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 167 >gi|297194627|ref|ZP_06912025.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152365|gb|EFH31700.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 200 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--G 155 L G+S +V L++RL+ L P FD VE AVK++Q G+ G Sbjct: 125 AGGTLRRGDSGAAVVDLQQRLMQL-WLYPYDEADGRFDEDVEQAVKVYQWDRGIQGDPLG 183 Query: 156 MVDSSTLEAMNV 167 + T A+ Sbjct: 184 VYGPHTRRALEA 195 >gi|157161473|ref|YP_001458791.1| hypothetical protein EcHS_A2113 [Escherichia coli HS] gi|157067153|gb|ABV06408.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] Length = 310 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|51894094|ref|YP_076785.1| spore cortex-lytic enzyme precursor [Symbiobacterium thermophilum IAM 14863] gi|51857783|dbj|BAD41941.1| spore cortex-lytic enzyme precursor [Symbiobacterium thermophilum IAM 14863] Length = 237 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V + RL G + + AV LFQ R+GL G+V Sbjct: 42 TLRWGSRGSDVCLAQRRLKAWGYY--RGEVDCIYGRLTYEAVTLFQRRNGLTVDGIVGPD 99 Query: 161 TLEAMN 166 T A+ Sbjct: 100 TWAALG 105 >gi|218666907|ref|YP_002426952.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519120|gb|ACK79706.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 348 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 41/169 (24%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++V+IPA + N +V V V + + +RI P W +P++I Sbjct: 84 IIVDIPARRIYYFPVNDRVVYTYPVGVFLPGWKEALTDTRIIAKFKMPAWNVPKNIHA-- 141 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ F ++ W PG N M +E Sbjct: 142 ----------------------WFEKKFHMDIPWYW----------PPGPENPMGELAME 169 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++H T P +R + GC ++ N+ L + TP Sbjct: 170 TGLS-GIFIHGTYHPW--GVGMRA-SQGCFQMFPENVAQLFPMVPVGTP 214 >gi|239631525|ref|ZP_04674556.1| periplasmic protease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525990|gb|EEQ64991.1| periplasmic protease [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 480 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 390 INATQLKPGDKGSDVKSLQQMLTAL--KVGSVTVNSQYDDATQAAVKTFQQANKLDATGT 447 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 448 ADQDTLAALAQKLSAQLTK 466 >gi|110346929|ref|YP_665747.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110283040|gb|ABG61100.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 184 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 65/186 (34%), Gaps = 44/186 (23%) Query: 183 IKKLLEQKMGLR--YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 ++L++ G R V+V+ + L V G +R V +GR T I Sbjct: 25 YRQLVDDPTGERPGTVVVDTRSYFLYLVRPGGKAMRYGVGLGRQG-FTWSGDGVIQWKQR 83 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W P +I + E W++ Q Sbjct: 84 WPKWTPPAEMIARQ----------------------------PELEKWSADNGG-----Q 110 Query: 301 DPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 PG N + + + F + + Y +H TPE +SGCVR+ ++IIDL Sbjct: 111 PPGLNNPLGARALYIFQNGEDTLYRLHGTPEYWTIGK---AVSSGCVRLMNQDIIDLYDR 167 Query: 356 LLKDTP 361 + TP Sbjct: 168 VATPTP 173 >gi|56963694|ref|YP_175425.1| peptidoglycan binding domain-containing protein [Bacillus clausii KSM-K16] gi|56909937|dbj|BAD64464.1| peptidoglycan-binding domain-containing protein [Bacillus clausii KSM-K16] Length = 355 Score = 65.4 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 20/180 (11%) Query: 13 CFFVYLILPMGLSLVE--------KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID 64 CFF +L L V PIH E + + +V + R Sbjct: 34 CFFFMSVLLFSLISVPEQADADTFSPIHEGEKSERVEKLQDYLVESGYLEDQDRSHTYDS 93 Query: 65 SDIPIISK--ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 + + + + IA Q + + L G+ + V L+++L Sbjct: 94 KVVAAVKQFQQDNNLLVDGIAGVQTLG--------SMAVLQEGSDGLLVNMLQKKLAQLQ 145 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 + + ++AV FQ ++GL G+ T +A+ Q + + Sbjct: 146 YY--QADIDGYYGVLTKAAVTAFQKQNGLAVDGIAGPLTFKALYYSEAEPAEQREKKSEK 203 >gi|292670826|ref|ZP_06604252.1| endopeptidase [Selenomonas noxia ATCC 43541] gi|292647447|gb|EFF65419.1| endopeptidase [Selenomonas noxia ATCC 43541] Length = 246 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + +G+ V ++ +L G F AVK FQ +GL GM Sbjct: 47 VSAESFQIGDQGTDVAEIQGQLSSFGY---DVVADGDFGPATAEAVKEFQAANGLAVDGM 103 Query: 157 VDSSTLEAM 165 V T +A+ Sbjct: 104 VGPVTYQAL 112 >gi|300934360|ref|ZP_07149616.1| putative hydrolase [Corynebacterium resistens DSM 45100] Length = 394 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 27/158 (17%) Query: 31 IHASVLDEIINESYHSIVN----DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + + E ++ + F+ + S + +A+ KA + Sbjct: 6 LQVGDSSPRVAEVRGTLARLGLLEGFEGDATGLSKQRWSAKDQVFDADLAEALKAFQQQR 65 Query: 87 DILSRGGWPELPIRPLH--------LGNS----------SVSVQRLRERLIISGDLDPSK 128 I++ G + L LG V +L+ +L G + Sbjct: 66 GIIADG---MITSGTLRALREASYTLGARVLSLQSNQFVGDDVAQLQTQLHDLGFY--TN 120 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + F +AV +Q+ +GL+ G+V +TL A++ Sbjct: 121 RIDGHFGHKTHAAVVSYQLNYGLNNDGVVGPNTLRALS 158 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 74/227 (32%), Gaps = 51/227 (22%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD------------PSKGLSVAFDAYVESAVKLFQMRH 149 L +G+SS V +R L G L+ FDA + A+K FQ + Sbjct: 6 LQVGDSSPRVAEVRGTLARLGLLEGFEGDATGLSKQRWSAKDQVFDADLAEALKAFQQQR 65 Query: 150 GLDPSGMVDSSTLEAMNVP----------------VDLRIRQLQVNLMRIKKLLEQKMGL 193 G+ GM+ S TL A+ V + QLQ L + + G Sbjct: 66 GIIADGMITSGTLRALREASYTLGARVLSLQSNQFVGDDVAQLQTQLHDLGFYTNRIDGH 125 Query: 194 RYVLVNIP--AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + + L N V+ R L RI P+SI Sbjct: 126 FGHKTHAAVVSYQLNYGLNND-----GVVGPNTLRALSYLGRRIT-------GGSPQSIR 173 Query: 252 QKDMM---------ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +K+ + + DP D+ + + EV EE+ W+ Sbjct: 174 EKEQIRSAGPQLSGKRVVIDPGLGGDHKGYAVLGPYGEVTEEEILWD 220 >gi|167036506|ref|YP_001664084.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038593|ref|YP_001666171.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114935|ref|YP_004185094.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|320116981|ref|YP_004187140.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855340|gb|ABY93748.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166857427|gb|ABY95835.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928026|gb|ADV78711.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319930072|gb|ADV80757.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1089 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 23/213 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ V+ L+E L I G S F + E+AV+ FQ ++GL G+V T Sbjct: 319 LKLGSTGNGVKILQETLNIIGY---SLVEDGQFGSGTEAAVRDFQSKNGLTVDGIVGPQT 375 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + + R V + + IPA +G + V + Sbjct: 376 WQKLG-SKLTRTYIRPVYQWNYAWGINISKAYAGAGIGIPA---SFSVDGSNAYFTDV-L 430 Query: 222 GRVDRQTPILHSRINRIM----FNPYWVIPRSIIQKDMMALLRQDPQYLKD----NNIHM 273 G + + I S +N + N ++ S D P Y D + + Sbjct: 431 GGIYKINNIFSSTLNLTVNGNLRNTNNLVNHSPAVDD---RYLYIPYYYSDSSKQHGKIV 487 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +K ++++D++S + Q P N Sbjct: 488 VLDKNNLNVIKQIDFSSSSLKS----QLPNSPN 516 >gi|325924927|ref|ZP_08186357.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] gi|325544664|gb|EGD16017.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] Length = 301 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 17/141 (12%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 I ++ + +N S I + +AQT++ +D Sbjct: 162 SITSAETENALNAMRQSYRQAI---ESGVAPEQAWKQINSQPPQQLAQTQQ---HKRDAA 215 Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQ 146 G L G V++L+ +L G + F + AV+ FQ Sbjct: 216 KDG--------KLEQGERGEQVKQLQGQLAQLGAVGRDGKPLHADGDFGGNTKHAVEQFQ 267 Query: 147 MRHGLDPSGMVDSSTLEAMNV 167 HGL G+ T A+ Sbjct: 268 REHGLQIDGIAGQQTQAALAK 288 >gi|294664477|ref|ZP_06729827.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605757|gb|EFF49058.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 565 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 L V+ L++ L G D A+ AVK FQ HGL Sbjct: 429 APSVLRDNARGAEVRTLQQTLQQLGYKDAGGNELKADGAYGQRTSDAVKAFQRAHGLQDD 488 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V T A+ + + N Sbjct: 489 GVVGRDTQAALKQAEKTPLLSEKTN 513 >gi|167553194|ref|ZP_02346944.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322325|gb|EDZ10164.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 309 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|16765345|ref|NP_460960.1| hypothetical protein STM2015 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161613379|ref|YP_001587344.1| hypothetical protein SPAB_01090 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168259690|ref|ZP_02681663.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263159|ref|ZP_03163233.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244687|ref|YP_002216100.1| hypothetical protein SeD_A2350 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353164|ref|YP_002226965.1| hypothetical protein SG2039 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857450|ref|YP_002244101.1| hypothetical protein SEN2013 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|731416|sp|P40680|ERFK_SALTY RecName: Full=Probable L,D-transpeptidase ErfK/SrfK; Flags: Precursor gi|535768|gb|AAA69298.1| unknown ORF [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420544|gb|AAL20919.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161362743|gb|ABX66511.1| hypothetical protein SPAB_01090 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197241414|gb|EDY24034.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197939203|gb|ACH76536.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272945|emb|CAR37886.1| putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205350634|gb|EDZ37265.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709253|emb|CAR33593.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247230|emb|CBG25054.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301158576|emb|CBW18087.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913006|dbj|BAJ36980.1| hypothetical protein STMDT12_C20370 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224660|gb|EFX49723.1| L,D-transpeptidase ErfK [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130338|gb|ADX17768.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623846|gb|EGE30191.1| protein ErfK/srfK [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 309 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|315300640|gb|EFU59868.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 16-3] Length = 311 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R Sbjct: 184 YIGKLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQF 231 >gi|254413016|ref|ZP_05026788.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180180|gb|EDX75172.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 417 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL +G+ +VQ L+ RL G + AV FQ L+ G+V + Sbjct: 37 PLQVGSRGETVQALQTRLKKLGYY--EGDTDGVYGDTTRLAVIEFQESIDLNADGVVGLT 94 Query: 161 TLEAMNVPVDLRIRQ 175 T + Sbjct: 95 TWTKLQAAAAEVPEP 109 >gi|294625068|ref|ZP_06703716.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600653|gb|EFF44742.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 630 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 L V+ L++ L G D A+ AVK FQ HGL Sbjct: 429 APSVLRDNARGAEVRTLQQTLQQLGYKDAGGNELKADGAYGQRTSDAVKAFQRAHGLQDD 488 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V T A+ + + N Sbjct: 489 GVVGRDTQAALKQAEKTPLLSEKTN 513 >gi|148239359|ref|YP_001224746.1| hypothetical protein SynWH7803_1023 [Synechococcus sp. WH 7803] gi|147847898|emb|CAK23449.1| Uncharacterized conserved membrane protein [Synechococcus sp. WH 7803] Length = 218 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 36/223 (16%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 ++ Q G + + +ST +P ++ R+ L Q++GL+ ++++ Sbjct: 24 LRAVQAADG-PKTDVSGASTEREPDPIPPLAAPVSDADSMARVPADLLQRVGLQ-LVLDR 81 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 + + +G + R VG V +TP R+ +++ P W P S + + Sbjct: 82 QHRQVLVLHDGLLTRRFPAAVGTVGWETPSGRFRVMQMVKEPVWTHPVS--GELLGPEEA 139 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +P + H D KG+E W+ + + G Sbjct: 140 TNPLGSRWIGFH-RDCKGRE------GWDGEQYLDIDGCTVAG----------------- 175 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 H TP R + GCVR+ N+ ++ + TP Sbjct: 176 --FHGTPYRWTVG---RAVSHGCVRLYEENVQEIFEMVRVGTP 213 >gi|87302650|ref|ZP_01085467.1| hypothetical protein WH5701_12089 [Synechococcus sp. WH 5701] gi|87282994|gb|EAQ74951.1| hypothetical protein WH5701_12089 [Synechococcus sp. WH 5701] Length = 220 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 44/158 (27%), Gaps = 51/158 (32%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + +GKV V +G TP+ + + NP +V +S +K ++ Sbjct: 98 REIRLERDGKVYGPWPVAIGDPATPTPLGTFNVINKVINPQYVSTKSGQKKGVI------ 151 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNN 320 G + I F N Sbjct: 152 ----------------------------------------GPNGPLGDRWIGFNTKGPNQ 171 Query: 321 TYMHDTPEPILFNNVVR-FETSGCVRV--RNIIDLDVW 355 +H TP + R T+GCVR+ ++ L Sbjct: 172 FGIHGTPSAWSWTVSSRSAVTNGCVRMFHEHVRKLFEM 209 >gi|320176226|gb|EFW51288.1| L,D-transpeptidase ErfK [Shigella dysenteriae CDC 74-1112] Length = 311 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVKRKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 231 >gi|187779972|ref|ZP_02996445.1| hypothetical protein CLOSPO_03568 [Clostridium sporogenes ATCC 15579] gi|187773597|gb|EDU37399.1| hypothetical protein CLOSPO_03568 [Clostridium sporogenes ATCC 15579] Length = 423 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++++ L G + F + E AVK FQ+ + L G++ Sbjct: 2 RVLKKGDRGSDVKKIQAVLQKIGY--DVGPIDGIFGSKTEEAVKRFQLNNRLAVDGIIGP 59 Query: 160 STLEAMNV 167 T E +N Sbjct: 60 KTYEVLNK 67 >gi|291447220|ref|ZP_06586610.1| lipoprotein [Streptomyces roseosporus NRRL 15998] gi|291350167|gb|EFE77071.1| lipoprotein [Streptomyces roseosporus NRRL 15998] Length = 295 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G+ S V+ L+ RL G + + + AV+ FQ + L +G Sbjct: 86 PRVLMRTGSESDRVRELQARLRQIGHFGRTPT--GYYGSVTADAVRSFQAKRSLPVTGST 143 Query: 158 DSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGL 215 D T + + + +L+ R +++ + R + ++ + +L + +GKV Sbjct: 144 DEVTWQRLRAMTRVPTAAELRPPTERPVAAPDERCLKGRVLCISKNSRTLAWMIDGKVVS 203 Query: 216 RSTVIVGRVDRQTPILHSRI 235 V G T + Sbjct: 204 AMDVRFGSDYTPTREGVFEV 223 >gi|254500037|ref|ZP_05112190.1| ErfK/YbiS/YcfS/YnhG superfamily [Labrenzia alexandrii DFL-11] gi|222441504|gb|EEE48181.1| ErfK/YbiS/YcfS/YnhG superfamily [Labrenzia alexandrii DFL-11] Length = 178 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++++ R + + ++V+ L V+ K +R V +GR + Sbjct: 13 PAINLKKVPERFYRQQVDYNTPEKVGTLVVDTQNFYLYLVQENKKAMRYGVGLGRAGFE- 71 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +RI R P W P +I+++ E W Sbjct: 72 WSGRARIARKTEWPKWTPPEEMIERE----------------------------PELEKW 103 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + PG N + + + +R+ Y +H T E +SGCVR Sbjct: 104 SWRNGGM-----PPGLENPLGARALYIFQGNRDTLYRLHGTSEYWTIGT---AVSSGCVR 155 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + +P Sbjct: 156 LMNQDIIDLFGRVPVGSP 173 >gi|302207202|gb|ADL11544.1| N-Acetymuramyl-L-Alanine Amidase [Corynebacterium pseudotuberculosis C231] Length = 398 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 18/115 (15%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGNS-----------SVSVQ 112 E +A+ K + + I++ G E+ +R L LG V Sbjct: 52 TYFDEDLAEVIKGMQQARGIIASGEINEVTLRALREASYKLGARVLSFEPNNIFVGDDVV 111 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +L+ +L G + + F A+ +Q+ +GL G+ T+ A Sbjct: 112 QLQTQLQELGFY--TDRVDGRFGENTYKALLSYQVNYGLKSDGVCGPETIRAFGR 164 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 65/243 (26%), Gaps = 38/243 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPS------------KGLSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G + S FD + +K Q Sbjct: 10 LRVGDHSPRVAEVRTALTRLGLVPDSDKEIKQSKGQTFTDPETYFDEDLAEVIKGMQQAR 69 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 G+ SG ++ TL A+ ++ ++ + + + + V+ Sbjct: 70 GIIASGEINEVTLRALRE-ASYKLGARVLSFEPNNIFVGDDVVQLQTQLQELGFYTDRVD 128 Query: 210 NG------KVGLRSTVIVG------RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 K L V G RI + +D Sbjct: 129 GRFGENTYKALLSYQVNYGLKSDGVCGPETIRAFGRLGRRITGGSPQALRERERVRDAGP 188 Query: 258 LLRQ-----DPQYLKDNNIHMIDEKGKEVFVEEVDWN--------SPEPPNFIFRQDPGK 304 +L DP ++ ++ E+ EE+ W+ P + Sbjct: 189 MLAGKRVVIDPSLGGNSRGQVVQGPYGEITEEEILWDLATRVEGRMIAAGMETIISRPRQ 248 Query: 305 INA 307 N Sbjct: 249 DNP 251 >gi|282555173|gb|ADA82687.1| L,D-transpeptidase [Candidatus Blochmannia castaneus] Length = 316 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 45/186 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 V++N L +N + + + +G V TP + I NP+W IP ++ Sbjct: 101 VVINTAEMRLYYYPKNNNIVIVLPIAIGTVKNATPSHWITSIKHKKKNPFW-IPTKSMRD 159 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M + Sbjct: 160 EYLKQ----------------------------------GKFLPTIFPAGPNNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-YHIEEVV 372 H T F +R T GC+R+R D+ +L P +R I E + Sbjct: 186 YLEKSYAI--HGTN--CNFGIGLR-ITRGCIRLR-PQDI-EYLFHIVPVGTRVQFINEPI 238 Query: 373 KTRKTT 378 KT T Sbjct: 239 KTTVET 244 >gi|118443295|ref|YP_878172.1| glycosy hydrolase family protein [Clostridium novyi NT] gi|118133751|gb|ABK60795.1| glycosyl hydrolase, family 25 [Clostridium novyi NT] Length = 323 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++RLI G F E AVK FQ + L G+V T Sbjct: 258 RRGARGNITKIIQQRLIDKGYYVGIYKADGVFRNDTELAVKKFQKNNNLKVDGIVGIETW 317 Query: 163 EAM 165 +A+ Sbjct: 318 KAL 320 >gi|303238362|ref|ZP_07324897.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] gi|302594066|gb|EFL63779.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] Length = 362 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G S V +L+ L G L S + + ++AVK Q ++GLD G+ Sbjct: 114 GALKEGMSGSRVTQLQSDLKKLGYLSASPT--GYYGSLTKAAVKKLQKKNGLDQDGVAGD 171 Query: 160 STLEAMNV 167 +TL +N Sbjct: 172 ATLTKINK 179 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G S V L++ L G L S + + +SAV+ Q +GLD G+ Sbjct: 30 ASKVLKEGMSGSDVTSLQKDLRTLGYLKVSPT--GYYGSLTKSAVERLQDSNGLDGDGIA 87 Query: 158 DSSTLEAMNV 167 S T+ ++ Sbjct: 88 GSKTISLISK 97 >gi|323977829|gb|EGB72915.1| ykud domain-containing protein [Escherichia coli TW10509] Length = 310 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 44/179 (24%) Query: 192 GLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRS 249 + +++N+ L + + +G+ R+TP + + R P W + Sbjct: 94 ARKGIVINVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVKRKQEAPTWTPTPN 153 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 ++ + + G N M Sbjct: 154 TRRE-----------------------------------YAKRGESLPAFVPAGPDNPMG 178 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 I H T F +R + GC+R+RN D +L + P +R I Sbjct: 179 LYAIYIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 230 >gi|86743213|ref|YP_483613.1| cell wall hydrolase/autolysin [Frankia sp. CcI3] gi|86570075|gb|ABD13884.1| cell wall hydrolase/autolysin [Frankia sp. CcI3] Length = 438 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 39/140 (27%), Gaps = 23/140 (16%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL- 102 V+ A D + +A + + + G R L Sbjct: 79 RVPAVDGTLGGVPAEPAEPADRF-----DRDLDNALRAFQQSRGLSADGILGPDTARALE 133 Query: 103 ----HLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 LG+ V L+ERL G F ESAV+ FQ Sbjct: 134 EARHKLGDRLLYHSPAYPFVGDDVAALQERLFNMGF--DVGRTDGIFGPRTESAVRDFQR 191 Query: 148 RHGLDPSGMVDSSTLEAMNV 167 GLDP G TL + Sbjct: 192 NRGLDPDGQCGPHTLRELKR 211 >gi|323968137|gb|EGB63546.1| ykud domain-containing protein [Escherichia coli M863] Length = 243 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 44/173 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L + + +G+ R+TP + + R P W + ++ Sbjct: 99 IVINVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 H T F +R + GC+R+RN D +L + P +R Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRE 229 >gi|300859519|ref|YP_003784502.1| putative hydrolase [Corynebacterium pseudotuberculosis FRC41] gi|300686973|gb|ADK29895.1| putative hydrolase [Corynebacterium pseudotuberculosis FRC41] gi|302331763|gb|ADL21957.1| N-Acetymuramyl-L-Alanine Amidase [Corynebacterium pseudotuberculosis 1002] gi|308277455|gb|ADO27354.1| N-Acetymuramyl-L-Alanine Amidase [Corynebacterium pseudotuberculosis I19] Length = 393 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 18/115 (15%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGNS-----------SVSVQ 112 E +A+ K + + I++ G E+ +R L LG V Sbjct: 47 TYFDEDLAEVIKGMQQARGIIASGEINEVTLRALREASYKLGARVLSFEPNNIFVGDDVV 106 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +L+ +L G + + F A+ +Q+ +GL G+ T+ A Sbjct: 107 QLQTQLQELGFY--TDRVDGRFGENTYKALLSYQVNYGLKSDGVCGPETIRAFGR 159 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 65/243 (26%), Gaps = 38/243 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPS------------KGLSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G + S FD + +K Q Sbjct: 5 LRVGDHSPRVAEVRTALTRLGLVPDSDKEIKQSKGQTFTDPETYFDEDLAEVIKGMQQAR 64 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 G+ SG ++ TL A+ ++ ++ + + + + V+ Sbjct: 65 GIIASGEINEVTLRALRE-ASYKLGARVLSFEPNNIFVGDDVVQLQTQLQELGFYTDRVD 123 Query: 210 NG------KVGLRSTVIVG------RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 K L V G RI + +D Sbjct: 124 GRFGENTYKALLSYQVNYGLKSDGVCGPETIRAFGRLGRRITGGSPQALRERERVRDAGP 183 Query: 258 LLRQ-----DPQYLKDNNIHMIDEKGKEVFVEEVDWN--------SPEPPNFIFRQDPGK 304 +L DP ++ ++ E+ EE+ W+ P + Sbjct: 184 MLAGKRVVIDPSLGGNSRGQVVQGPYGEITEEEILWDLATRVEGRMIAAGMETIISRPRQ 243 Query: 305 INA 307 N Sbjct: 244 DNP 246 >gi|325291385|ref|YP_004267566.1| spore cortex-lytic enzyme [Syntrophobotulus glycolicus DSM 8271] gi|324966786|gb|ADY57565.1| spore cortex-lytic enzyme [Syntrophobotulus glycolicus DSM 8271] Length = 234 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L L G+S V+ L+++L G + F + E A+K FQ G+ G Sbjct: 33 ALGDTVLKEGSSGQEVKSLQKKLSQLGY--SVGAIDGKFGSATEQALKRFQKNRGIKTDG 90 Query: 156 MVDSSTLEAMNV 167 + T + +N Sbjct: 91 IFGDETAKELNR 102 >gi|150389177|ref|YP_001319226.1| spore cortex-lytic enzyme SleB [Alkaliphilus metalliredigens QYMF] gi|149949039|gb|ABR47567.1| Spore cortex-lytic enzyme SleB [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + L G+S V L+ERL D +S + AV+LFQ +GL G Sbjct: 25 SIYAQNLSWGSSGGEVTDLQERLTRWDYYD--GPISGTYGPQTHEAVRLFQRINGLTVDG 82 Query: 156 MVDSSTLEAMNV 167 +V T A+ + Sbjct: 83 IVGPQTRGALGM 94 >gi|327253132|gb|EGE64786.1| hypothetical protein ECSTEC7V_2385 [Escherichia coli STEC_7v] Length = 242 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 44/173 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVINVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 H T F +R + GC+R+RN D +L + P +R Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRE 228 >gi|328544425|ref|YP_004304534.1| ErfK/YbiS/YcfS/YnhG family [polymorphum gilvum SL003B-26A1] gi|326414167|gb|ADZ71230.1| ErfK/YbiS/YcfS/YnhG family [Polymorphum gilvum SL003B-26A1] Length = 199 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 40/167 (23%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R ++++ L V G ++ V VG+ Q R+ R Sbjct: 53 REMVSYNGPHAPGTIIIDTGERRLYHVRPGGKAMKYGVGVGKEGFQ-WAGTHRVTRKAEW 111 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P + ++ + + Sbjct: 112 PGWTPPPQMRARE-----------------------------------RAKGRILPAHME 136 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H T +P + +SGC+R+ N Sbjct: 137 GGPNNPLGARALYIG-STLYRIHGTNQPWTIGS---AVSSGCIRLAN 179 >gi|291541685|emb|CBL14795.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus bromii L2-63] Length = 530 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 4/111 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD--SSTL 162 G+S V+++++RL G D + F E A K FQ GL G+ +TL Sbjct: 234 GSSGAEVKKIQQRLADLGYYD--GAVDGYFGDATEEAYKAFQKAAGLTVDGIAGDSRNTL 291 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 + N P + + ++ V EN +V Sbjct: 292 YSENAPEAPKADTTTKTEDKPEEETTAPTEATTEPVTEAVQYQNGDENDEV 342 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + V ++++LI G + Y AV FQ ++ LD +G+VD T A Sbjct: 336 GDENDEVTAIQQQLIKLGYFAMDAT--GYYGEYTAQAVANFQNQNSLDSTGIVDEKTYNA 393 Query: 165 M 165 + Sbjct: 394 L 394 >gi|301327785|ref|ZP_07220983.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 78-1] gi|300845678|gb|EFK73438.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 78-1] Length = 277 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 65 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 124 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 125 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 149 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 150 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 197 >gi|300920211|ref|ZP_07136657.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 115-1] gi|300412713|gb|EFJ96023.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 115-1] Length = 277 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 65 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 124 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 125 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 149 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 150 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 197 >gi|13488406|ref|NP_109413.1| hypothetical protein mll9547 [Mesorhizobium loti MAFF303099] gi|14028160|dbj|BAB54752.1| mll9547 [Mesorhizobium loti MAFF303099] Length = 176 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 51/179 (28%), Gaps = 46/179 (25%) Query: 196 VLVNIPAASLEAVENGKVGL-RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 + V+ A + ++ L +G ++ P + + R++ NP + K Sbjct: 35 IEVDKGARLVRVLDPSGKWLAVFPASIGSAEKPAPSGEAEVKRVVRNPTYHYDPRFAFKG 94 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + A F G N + I+ Sbjct: 95 VKAKR-------------------------------------PFTIAAGPNNPV--VWID 115 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEV 371 + +H TPEP + GC+R+ N DL + K T + + Sbjct: 116 LSIE-SYGIHGTPEPGKIGTT---FSHGCIRLTNWDAEDLASMVQKGTKVSFKDEMANA 170 >gi|85373877|ref|YP_457939.1| hypothetical protein ELI_05250 [Erythrobacter litoralis HTCC2594] gi|84786960|gb|ABC63142.1| hypothetical protein ELI_05250 [Erythrobacter litoralis HTCC2594] Length = 425 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG + I+ + +H TPEP R ++SGCVR+ N Sbjct: 362 PPGPNGMVGVVWIDLSKEH-YGIHGTPEPETIG---RAQSSGCVRLTNWD 407 >gi|186682714|ref|YP_001865910.1| ErfK/YbiS/YcfS/YnhG family protein [Nostoc punctiforme PCC 73102] gi|186465166|gb|ACC80967.1| ErfK/YbiS/YcfS/YnhG family protein [Nostoc punctiforme PCC 73102] Length = 182 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 52/166 (31%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + V A + ++ +V + +G+ +TP+ + ++ + NP Sbjct: 58 IRVKRGARQVYVYQDKQVLKSFPIAIGKSGWETPLGNYQVIYMKKNPI------------ 105 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + PG N + I F Sbjct: 106 -----------------------------------FKNFKTGNIIMPGANNPLGKRVIVF 130 Query: 316 --YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Y +++ H T + L + GC+R+ N + ++ L + Sbjct: 131 KIYKKSHLAFHGTNQDKLIGK---AVSHGCIRMLNKDVIALYELVN 173 >gi|205373687|ref|ZP_03226490.1| hypothetical protein Bcoam_10670 [Bacillus coahuilensis m4-4] Length = 355 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++L+E LI G G + + + AV FQ +GL G+ T Sbjct: 202 LLFGDKGADVKKLQESLIRLGYPLTKFGADGDYGSETKQAVMNFQKANGLPVDGIAGIQT 261 Query: 162 LEAMNVPVDLRIRQLQ 177 ++ +N +D + ++ Sbjct: 262 MKKVNELLDAKKVTIE 277 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 25/153 (16%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY- 85 E P++ +++ E + ++ + L D ETI Q K Y Sbjct: 37 GELPLNNGDRGDLVREVQNDLIKLGYSLPLYGADGF-------YGAETIQQVRKFQKDYY 89 Query: 86 ---QDILSRGGW--------------PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I+ + P + L +G+ +V L++ L G P Sbjct: 90 LTVDGIVGENTFKALKERSTTKSTVPPSTSNQNLSIGSVGSNVMMLQQNLQKLGYSLPKY 149 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G F E AVK Q +GL G+V S+T Sbjct: 150 GSDGTFGQETEDAVKQLQRDNGLIIDGIVGSNT 182 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL+ G+ V+ ++ LI G P G + A V+ FQ + L G+V + Sbjct: 40 PLNNGDRGDLVREVQNDLIKLGYSLPLYGADGFYGAETIQQVRKFQKDYYLTVDGIVGEN 99 Query: 161 TLEAMN 166 T +A+ Sbjct: 100 TFKALK 105 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 14/143 (9%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI------PIISKETIAQTEK--AIAF 84 L E + + + D + P+ I +K + Sbjct: 211 VKKLQESLIRLGYPLTKFGADGDYGSETKQAVMNFQKANGLPVDGIAGIQTMKKVNELLD 270 Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVK 143 + + +P LP L G+ +V+++++ L DL + + + E AV+ Sbjct: 271 AKKVTIEAPYP-LPNVILKQGSEGNNVKQVQQALK---DLKLNVGTVDGIYGPKTEKAVR 326 Query: 144 LFQMRH-GLDPSGMVDSSTLEAM 165 FQ + L G+ +T + M Sbjct: 327 DFQSNYPTLKNDGIYGPNTRKYM 349 >gi|254501238|ref|ZP_05113389.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] gi|222437309|gb|EEE43988.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] Length = 197 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 40/167 (23%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + ++++ L V ++ V VG+ Q R+ R Sbjct: 51 RKRVRYDGPYSPGTIVIDTSERRLYHVLGNGRAMKYGVGVGKDGFQ-WAGTHRVTRKAEW 109 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P + ++ + Sbjct: 110 PSWTPPAQMRARE-----------------------------------RAKGRILPAHMK 134 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N M + + + +H T EP + +SGC+R+ N Sbjct: 135 GGPNNPMGARALYIGNT-LYRIHGTTEPWTIGS---AVSSGCIRMAN 177 >gi|209524911|ref|ZP_03273456.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209494560|gb|EDZ94870.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 225 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+S V L+ +L G F AVK FQ +GL G+ Sbjct: 160 KSLSHGDSCSRVTNLQHKLAYYGYFHARAT--GYFGPITTKAVKAFQRDYGLRVDGVAGP 217 Query: 160 STLEAMNV 167 +TL A+ + Sbjct: 218 ATLAALGM 225 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V +L+ L G + F + + +VK FQ +GL G+V +T A Sbjct: 67 GSSGNHVVQLQNALANHGYF--RARSTGYFGSITKHSVKAFQRDYGLVADGIVGPATASA 124 Query: 165 MN 166 + Sbjct: 125 LG 126 >gi|118590295|ref|ZP_01547698.1| hypothetical protein SIAM614_12293 [Stappia aggregata IAM 12614] gi|118437267|gb|EAV43905.1| hypothetical protein SIAM614_12293 [Stappia aggregata IAM 12614] Length = 197 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 50/167 (29%), Gaps = 40/167 (23%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + ++++ L V G ++ V VG+ Q RI R Sbjct: 51 RKRVKYDGPYPAGTIIIDTSERRLYHVLPGGKAMKYGVGVGKEGFQ-WAGTHRITRKAEW 109 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P S ++ A R P Y+ Sbjct: 110 PSWT-PPSQMRARERAKGRILPAYM----------------------------------P 134 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N M + + +H T EP + +SGC+R+ N Sbjct: 135 GGPNNPMGARAMYIG-STLYRIHGTTEPWTIGS---AVSSGCIRLAN 177 >gi|300822238|ref|ZP_07102379.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 119-7] gi|300931206|ref|ZP_07146550.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 187-1] gi|301645490|ref|ZP_07245426.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 146-1] gi|300460977|gb|EFK24470.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 187-1] gi|300525121|gb|EFK46190.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 119-7] gi|301076226|gb|EFK91032.1| ErfK/YbiS/YcfS/YnhG [Escherichia coli MS 146-1] Length = 277 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 65 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 124 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 125 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 149 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 150 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 197 >gi|297201860|ref|ZP_06919257.1| serine/threonine protein kinase [Streptomyces sviceus ATCC 29083] gi|297147990|gb|EDY56806.2| serine/threonine protein kinase [Streptomyces sviceus ATCC 29083] Length = 559 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V +++ L G G+ F +SAVK FQ GL+ G V +T A Sbjct: 495 GDKGQRVVQVQCMLTKRGYSVGGSGVDGEFGRDTQSAVKQFQSAKGLEVDGQVGPNTWAA 554 Query: 165 MNVP 168 + Sbjct: 555 LRSS 558 >gi|254412420|ref|ZP_05026194.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180730|gb|EDX75720.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 178 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 8/87 (9%) Query: 87 DILSRGGWPELPIRP------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 I+ W L L+ G+ V ++ L ++ D + F E Sbjct: 77 GIVDSLTWQALYQGAPVNMPVLNRGSRHDMVIPVQWVLHLTQDYS--APIDGDFGEQTER 134 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNV 167 AV+ FQ RHGL G+V T A++ Sbjct: 135 AVRSFQKRHGLVEDGVVSEPTWYALSQ 161 >gi|153010337|ref|YP_001371551.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151562225|gb|ABS15722.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 255 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 40/185 (21%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A N +R Q+ + ++++ L V++G +R V VG+ Sbjct: 92 AANPATTVRKHQIDPAYLPQTVSYSGNEKPGTIVIDTGKRFLYLVQSGGKAMRYGVGVGK 151 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + RI+R P W P+ +I ++ Sbjct: 152 QG-FSWKGSQRISRKAEWPTWTPPKEMIARE----------------------------- 181 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 + R + G N + + + +H T +P + +SGC Sbjct: 182 ------RKKGRILPARMEGGINNPLGARALYLG-STLYRIHGTNQPWTIGKAM---SSGC 231 Query: 344 VRVRN 348 +R+RN Sbjct: 232 IRMRN 236 >gi|319651464|ref|ZP_08005592.1| hypothetical protein HMPREF1013_02204 [Bacillus sp. 2_A_57_CT2] gi|317396779|gb|EFV77489.1| hypothetical protein HMPREF1013_02204 [Bacillus sp. 2_A_57_CT2] Length = 173 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 57/170 (33%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 G +++VN + + + KV T G+ D TP + NP Sbjct: 20 WPLGPNPLPGDPFLIVNKQTNEVAFIHDHKVQSVITAATGKTDDLTPEGMFTVTVKAANP 79 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 Y + +I Sbjct: 80 ----------------------YYRKKDIK----------------------------GG 89 Query: 303 GKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRN 348 N + + I F + + +H T +P R+ ++GC+R++N Sbjct: 90 DPRNPLGTRWIGFDAEDTDGRIYGIHGTNDPASIG---RYVSNGCIRLQN 136 >gi|239990210|ref|ZP_04710874.1| hypothetical protein SrosN1_23088 [Streptomyces roseosporus NRRL 11379] Length = 350 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G+ S V+ L+ RL G + + + AV+ FQ + L +G Sbjct: 141 PRVLMRTGSESDRVRELQARLRQIGHFGRTPT--GYYGSVTADAVRSFQAKRSLPVTGST 198 Query: 158 DSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGL 215 D T + + + +L+ R +++ + R + ++ + +L + +GKV Sbjct: 199 DEVTWQRLRAMTRVPTAAELRPPTERPVAAPDERCLKGRVLCISKNSRTLAWMIDGKVVS 258 Query: 216 RSTVIVGRVDRQTPILHSRI 235 V G T + Sbjct: 259 AMDVRFGSDYTPTREGVFEV 278 >gi|17231786|ref|NP_488334.1| hypothetical protein all4294 [Nostoc sp. PCC 7120] gi|17133430|dbj|BAB75993.1| all4294 [Nostoc sp. PCC 7120] Length = 508 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + G + L G++ +V RL++RL G P+ + F AV FQ + Sbjct: 206 AATGSVGVESPVLSEGSTGQAVTRLQQRLRQLGYFSPNPTGN--FRGITRDAVMAFQRKA 263 Query: 150 GLDPSGMVDSSTLEAMNVPVDLR 172 GL +G+V+ T A+ Sbjct: 264 GLPITGVVNQQTWNALGGVAQAP 286 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 10/165 (6%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIA 76 +G + + P + + + + + F+ + D + + Sbjct: 275 TWNALG-GVAQAPNRPGLSTPQVRDLQQRLRDLGYFNGNPTGSIGAMTRDAIVRFQRDYR 333 Query: 77 QTEKAIAFYQDILS-RGGWPELPIRP-----LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 T IA Q + + W + L +G+ +V+ +++RL G + L Sbjct: 334 LTADGIADVQILQAVSRVWEDRYANQPNRNLLTVGDRGNNVRAVQQRLTQLGFF--TGSL 391 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 FD Y ++V FQ + L+P+G VDS T +A+N+ Sbjct: 392 DGYFDEYTRASVASFQQYYQLNPTGNVDSQTWQALNINGSPIAEI 436 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 T++A+ + G + L LG+ +V +L++ L + + F + Sbjct: 121 TQRALQRACRSATPG---AISRGDLRLGSRGAAVSQLQQNLRRLRYF--NGPNTGYFGSE 175 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + AV FQ + + G+V + T +A+ Sbjct: 176 TQQAVIRFQRANRIGADGIVGNQTAQAIR 204 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 23/127 (18%) Query: 96 ELPIRPL---HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + L +G++ V ++ L G + ++ F + S V FQ + L Sbjct: 55 SVAGEALALQKVGSTGSEVAEIQRCLKRLGFF--NGPVNGRFASITRSGVIGFQRANRLA 112 Query: 153 PSGMVDSSTLEAMNV------------------PVDLRIRQLQVNLMRIKKLLEQKMGLR 194 G+V T A+ + QLQ NL R++ G Sbjct: 113 ADGVVGGGTQRALQRACRSATPGAISRGDLRLGSRGAAVSQLQQNLRRLRYFNGPNTGYF 172 Query: 195 YVLVNIP 201 Sbjct: 173 GSETQQA 179 >gi|119383021|ref|YP_914077.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119372788|gb|ABL68381.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 317 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 21/119 (17%) Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIIS 121 + E A+ E A YQ + R L G+ V+V+RL+ L I Sbjct: 156 AARYNGNANVAEYSARIETA---YQKLSGRA-----SPVVLRSGDKGVAVRRLQYALGI- 206 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-----VPVDLRIRQ 175 + +F + AV+ FQ RHGL G+V T +A+ PV Q Sbjct: 207 -------DVDGSFGPDTDKAVRDFQKRHGLTVDGVVGQRTWKALEGYSGIQPVKQPAAQ 258 >gi|328887740|emb|CAJ69599.2| putative cell wall protein [Clostridium difficile] Length = 644 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 25/175 (14%) Query: 246 IPRSIIQK---DMMALLRQDPQYLKDNN----IHMIDEKGKEVFVE--EVDWNSPEPPNF 296 +P S ++ + Y +N + K N + + Sbjct: 23 VPESSAASKHVIIVNSRKNTLGYFVNNKLVKEFRVATGKKGSETPTGKTKVVNKIKNRPY 82 Query: 297 IFRQDPG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + + + +H + GC+R+ N Sbjct: 83 YKGNIPGGSPRNPLGDRWMGLALKGTYGDTYGIHGNNNESSIGK---HISGGCIRMHNKD 139 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 WL P S + ++ + VK+A + ++ + W ++ + Sbjct: 140 --VRWLFDQVPVGS----DVIIDYSNDSYVKIAAKYKINLN-QTGWKTENGKKYY 187 >gi|296451772|ref|ZP_06893498.1| cell surface protein [Clostridium difficile NAP08] gi|296880100|ref|ZP_06904068.1| cell surface protein [Clostridium difficile NAP07] gi|296259382|gb|EFH06251.1| cell surface protein [Clostridium difficile NAP08] gi|296428914|gb|EFH14793.1| cell surface protein [Clostridium difficile NAP07] Length = 653 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 25/175 (14%) Query: 246 IPRSIIQK---DMMALLRQDPQYLKDNN----IHMIDEKGKEVFVE--EVDWNSPEPPNF 296 +P S ++ + Y +N + K N + + Sbjct: 32 VPESSAASKHVIIVNSRKNTLGYFVNNKLVKEFRVATGKKGSETPTGKTKVVNKIKNRPY 91 Query: 297 IFRQDPG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + + + +H + GC+R+ N Sbjct: 92 YKGNIPGGSPRNPLGDRWMGLALKGTYGDTYGIHGNNNESSIGK---HISGGCIRMHNKD 148 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 WL P S + ++ + VK+A + ++ + W ++ + Sbjct: 149 --VRWLFDQVPVGS----DVIIDYSNDSYVKIAAKYKINLN-QTGWKTENGKKYY 196 >gi|255656698|ref|ZP_05402107.1| cell surface protein [Clostridium difficile QCD-23m63] Length = 644 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 25/175 (14%) Query: 246 IPRSIIQK---DMMALLRQDPQYLKDNN----IHMIDEKGKEVFVE--EVDWNSPEPPNF 296 +P S ++ + Y +N + K N + + Sbjct: 23 VPESSAASKHVIIVNSRKNTLGYFVNNKLVKEFRVATGKKGSETPTGKTKVVNKIKNRPY 82 Query: 297 IFRQDPG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + + + +H + GC+R+ N Sbjct: 83 YKGNIPGGSPRNPLGDRWMGLALKGTYGDTYGIHGNNNESSIGK---HISGGCIRMHNKD 139 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 WL P S + ++ + VK+A + ++ + W ++ + Sbjct: 140 --VRWLFDQVPVGS----DVIIDYSNDSYVKIAAKYKINLN-QTGWKTENGKKYY 187 >gi|255101881|ref|ZP_05330858.1| cell surface protein [Clostridium difficile QCD-63q42] gi|255307750|ref|ZP_05351921.1| cell surface protein [Clostridium difficile ATCC 43255] Length = 644 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 25/175 (14%) Query: 246 IPRSIIQK---DMMALLRQDPQYLKDNN----IHMIDEKGKEVFVE--EVDWNSPEPPNF 296 +P S ++ + Y +N + K N + + Sbjct: 23 VPESSAASKHVIIVNSRKNTLGYFVNNKLVKEFRVATGKKGSETPTGKTKVVNKIKNRPY 82 Query: 297 IFRQDPG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + + + +H + GC+R+ N Sbjct: 83 YKGNIPGGSPRNPLGDRWMGLALKGTYGDTYGIHGNNNESSIGK---HISGGCIRMHNKD 139 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 WL P S + ++ + VK+A + ++ + W ++ + Sbjct: 140 --VRWLFDQVPVGS----DVIIDYSNDSYVKIAAKYKINLN-QTGWKTENGKKYY 187 >gi|254976305|ref|ZP_05272777.1| cell surface protein [Clostridium difficile QCD-66c26] gi|255093691|ref|ZP_05323169.1| cell surface protein [Clostridium difficile CIP 107932] gi|255315441|ref|ZP_05357024.1| cell surface protein [Clostridium difficile QCD-76w55] gi|255518106|ref|ZP_05385782.1| cell surface protein [Clostridium difficile QCD-97b34] gi|255651222|ref|ZP_05398124.1| cell surface protein [Clostridium difficile QCD-37x79] gi|306521068|ref|ZP_07407415.1| cell surface protein [Clostridium difficile QCD-32g58] Length = 644 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 25/175 (14%) Query: 246 IPRSIIQK---DMMALLRQDPQYLKDNN----IHMIDEKGKEVFVE--EVDWNSPEPPNF 296 +P S ++ + Y +N + K N + + Sbjct: 23 VPESSAASKHVIIVNSRKNTLGYFVNNKLVKEFRVATGKKGSETPTGKTKVVNKIKNRPY 82 Query: 297 IFRQDPG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + + + +H + GC+R+ N Sbjct: 83 YKGNIPGGSPRNPLGDRWMGLALKGTYGDTYGIHGNNNESSIGK---HISGGCIRMHNKD 139 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 WL P S + ++ + VK+A + ++ + W ++ + Sbjct: 140 --VRWLFDQVPVGS----DVIIDYSNDSYVKIAAKYKINLN-QTGWKTENGKKYY 187 >gi|126700327|ref|YP_001089224.1| cell surface protein [Clostridium difficile 630] Length = 653 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 25/175 (14%) Query: 246 IPRSIIQK---DMMALLRQDPQYLKDNN----IHMIDEKGKEVFVE--EVDWNSPEPPNF 296 +P S ++ + Y +N + K N + + Sbjct: 32 VPESSAASKHVIIVNSRKNTLGYFVNNKLVKEFRVATGKKGSETPTGKTKVVNKIKNRPY 91 Query: 297 IFRQDPG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + + + +H + GC+R+ N Sbjct: 92 YKGNIPGGSPRNPLGDRWMGLALKGTYGDTYGIHGNNNESSIGK---HISGGCIRMHNKD 148 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 WL P S + ++ + VK+A + ++ + W ++ + Sbjct: 149 --VRWLFDQVPVGS----DVIIDYSNDSYVKIAAKYKINLN-QTGWKTENGKKYY 196 >gi|260684287|ref|YP_003215572.1| cell surface protein [Clostridium difficile CD196] gi|260687946|ref|YP_003219080.1| cell surface protein [Clostridium difficile R20291] gi|260210450|emb|CBA64897.1| cell surface protein [Clostridium difficile CD196] gi|260213963|emb|CBE06051.1| cell surface protein [Clostridium difficile R20291] Length = 653 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 25/175 (14%) Query: 246 IPRSIIQK---DMMALLRQDPQYLKDNN----IHMIDEKGKEVFVE--EVDWNSPEPPNF 296 +P S ++ + Y +N + K N + + Sbjct: 32 VPESSAASKHVIIVNSRKNTLGYFVNNKLVKEFRVATGKKGSETPTGKTKVVNKIKNRPY 91 Query: 297 IFRQDPG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + + + +H + GC+R+ N Sbjct: 92 YKGNIPGGSPRNPLGDRWMGLALKGTYGDTYGIHGNNNESSIGK---HISGGCIRMHNKD 148 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 WL P S + ++ + VK+A + ++ + W ++ + Sbjct: 149 --VRWLFDQVPVGS----DVIIDYSNDSYVKIAAKYKINLN-QTGWKTENGKKYY 196 >gi|224583490|ref|YP_002637288.1| hypothetical protein SPC_1700 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468017|gb|ACN45847.1| hypothetical protein SPC_1700 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 309 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNTN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|254430899|ref|ZP_05044602.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanobium sp. PCC 7001] gi|197625352|gb|EDY37911.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanobium sp. PCC 7001] Length = 230 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 51/174 (29%), Gaps = 51/174 (29%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 R +++ + + ENG V R V +G TP+ R+ + NP + RS Sbjct: 98 RREIVLELGRREISLRENGLVVRRWPVAIGDPSTPTPVGTFRVENKVLNPRYQSTRSGKI 157 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 + G + Sbjct: 158 NSTV----------------------------------------------GPQGPLGDRW 171 Query: 313 IEFYSR--NNTYMHDTPEPILFNNVVR-FETSGCVRV--RNIIDLDVWLLKDTP 361 I F N +H TP + R ++GCVR+ ++ +L + TP Sbjct: 172 IGFKHSGTNQYGIHGTPTAWAWTVTSRAAVSNGCVRMLTPHVRELFDKVDIGTP 225 >gi|21223243|ref|NP_629022.1| lipoprotein [Streptomyces coelicolor A3(2)] gi|11544753|emb|CAC17656.1| putative lipoprotein [Streptomyces coelicolor A3(2)] Length = 281 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 4/138 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ L+ RL L G + +D E AV FQ + GL +G D+ T Sbjct: 77 KRGDTGRDVRELQARLRQVEWLV--DGPTGTYDDLTERAVSGFQGKRGLPRTGRTDTVTW 134 Query: 163 EAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + + + + + R + V+ + +L + +G+ +V Sbjct: 135 QRLLGMSHEPGKWDLYLMGGQPAAAPDPRCTSGRVLCVSKSSRTLRWMIDGRTVSTMSVR 194 Query: 221 VGRVDRQTPILHSRINRI 238 G T ++ Sbjct: 195 FGSQYTPTREGVFQVYWK 212 >gi|326790802|ref|YP_004308623.1| peptidoglycan-binding protein [Clostridium lentocellum DSM 5427] gi|326541566|gb|ADZ83425.1| Peptidoglycan-binding domain 1 protein [Clostridium lentocellum DSM 5427] Length = 437 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL LG+S +V+ ++ R+ + L P + F+ + AVK FQ L Sbjct: 353 PGSPLRLGDSGPAVRTIQMQLNRISQNFPLIPKVAVDGNFNEATQEAVKTFQKIFHLPQD 412 Query: 155 GMVDSSTLEAMNV 167 G+V ST ++ Sbjct: 413 GIVGKSTWYEISR 425 >gi|239943759|ref|ZP_04695696.1| hypothetical protein SrosN15_22371 [Streptomyces roseosporus NRRL 15998] Length = 321 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G+ S V+ L+ RL G + + + AV+ FQ + L +G Sbjct: 112 PRVLMRTGSESDRVRELQARLRQIGHFGRTPT--GYYGSVTADAVRSFQAKRSLPVTGST 169 Query: 158 DSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGL 215 D T + + + +L+ R +++ + R + ++ + +L + +GKV Sbjct: 170 DEVTWQRLRAMTRVPTAAELRPPTERPVAAPDERCLKGRVLCISKNSRTLAWMIDGKVVS 229 Query: 216 RSTVIVGRVDRQTPILHSRI 235 V G T + Sbjct: 230 AMDVRFGSDYTPTREGVFEV 249 >gi|313115026|ref|ZP_07800517.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622645|gb|EFQ06109.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 165 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + G P L G+S +V+ ++++L G F A +AV+ F Sbjct: 88 RYTAKHGLHVPYPGIALRSGSSGGTVRLVQQKLNSLG---ERLNADGRFGAATAAAVQRF 144 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q R+GL G V T E M Sbjct: 145 QRRNGLTADGAVGEGTWEKM 164 Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S V ++ L D F E+AVK FQ+++ ++ G V Sbjct: 19 LQRGSSGPDVALVQTWLNGVRDACTWYSELKADGKFGISTENAVKEFQLKNKMNVDGKVG 78 Query: 159 SSTLEAM 165 ++T + Sbjct: 79 ANTWNVL 85 >gi|284046013|ref|YP_003396353.1| transglycosylase [Conexibacter woesei DSM 14684] gi|283950234|gb|ADB52978.1| Transglycosylase domain protein [Conexibacter woesei DSM 14684] Length = 224 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G+S V +L+++L + AF E AV+ +Q + GL G+V Sbjct: 70 SDGVLKKGSSGPVVVQLQQKLGV--------PADGAFGPQTERAVRRYQKQKGLGVDGVV 121 Query: 158 DSSTLEAMNVPVDLRIRQ 175 T A+ + + Q Sbjct: 122 GPQTASALGISLATAQAQ 139 >gi|186683324|ref|YP_001866520.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186465776|gb|ACC81577.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 126 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ ++ L G + + + + +AV FQ H + G V + T Sbjct: 54 LAPGSRGQAVRDVQAALQRLGFY--NGAVDGIYGSRTATAVATFQRSHRIVGDGRVGALT 111 Query: 162 LEAMNVPVDLRIRQ 175 +A+ + R R Sbjct: 112 WQALRSSIAPRRRS 125 >gi|329935475|ref|ZP_08285335.1| hypothetical protein SGM_0827 [Streptomyces griseoaurantiacus M045] gi|329304999|gb|EGG48866.1| hypothetical protein SGM_0827 [Streptomyces griseoaurantiacus M045] Length = 268 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L G+S +V L++RL+ D+ +DA + +AV FQ+ +G+ G+ Sbjct: 194 AGTLREGDSGPAVSELQQRLLRVPDVYRDGATDGHYDAVLRAAVARFQLWYGIRGDESGV 253 Query: 157 VDSSTLEAMN 166 T + Sbjct: 254 YGDDTRRDLE 263 >gi|289769547|ref|ZP_06528925.1| lipoprotein [Streptomyces lividans TK24] gi|289699746|gb|EFD67175.1| lipoprotein [Streptomyces lividans TK24] Length = 282 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 4/138 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ L+ RL L G + +D E AV FQ + GL +G D+ T Sbjct: 78 KRGDTGRDVRELQARLRQVEWLV--DGPTGTYDDLTERAVSGFQGKRGLPRTGRTDTVTW 135 Query: 163 EAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + + + + + R + V+ + +L + +G+ +V Sbjct: 136 QRLLGMSHEPGKWDLYLMGGQPAAAPDPRCTSGRVLCVSKSSRTLRWMIDGRTVSTMSVR 195 Query: 221 VGRVDRQTPILHSRINRI 238 G T ++ Sbjct: 196 FGSQYTPTREGVFQVYWK 213 >gi|320193269|gb|EFW67907.1| L,D-transpeptidase ErfK [Escherichia coli WV_060327] Length = 274 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 65 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 124 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 125 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 149 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 150 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 197 >gi|282555158|gb|ADA82676.1| L,D-transpeptidase [endosymbiont of Polyrhachis turneri] Length = 311 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 44/185 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPY 243 L+ +++N L +N + + +G ++ TP + I + NP Sbjct: 91 LILPDTPHEGIIINSAEMRLFFYPKNNNTVIIFPIGIGEIEHHTPFNWITSIQKKKHNPT 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W+ ++I + Y+ +I PG Sbjct: 151 WIPTQNIKNE-----------YIARGDIP------------------------PKIVPPG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M S + H T F +R GCVR+ D+ +L P Sbjct: 176 PQNPMGSHALYIGKLYAI--HGTNSN--FGIGLRIX-HGCVRL-KTKDM-KYLFDHAPIG 228 Query: 364 SRYHI 368 +R Sbjct: 229 TRVQF 233 >gi|237732014|ref|ZP_04562495.1| protein erfK/srfK [Citrobacter sp. 30_2] gi|226907553|gb|EEH93471.1| protein erfK/srfK [Citrobacter sp. 30_2] Length = 309 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W + ++ Sbjct: 98 IVINVAEMRLYYYPAGSNTVEVLPIGIGQAGRETPRNWVTAVERKQEAPSWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAARGESLPAFVPAGPENPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-YHIEEVV 372 H T F +R + GC+R+RN D +L P +R I+ V Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDTVPVGTRVQLIDRPV 235 Query: 373 KTRKT----TPVKLATEV 386 K + V++ + Sbjct: 236 KYSEEPDGSRWVEVHEPL 253 >gi|303230788|ref|ZP_07317535.1| putative protein P60 [Veillonella atypica ACS-049-V-Sch6] gi|302514548|gb|EFL56543.1| putative protein P60 [Veillonella atypica ACS-049-V-Sch6] Length = 264 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V ++++LI G + + + + AV+LFQ GL G++ +T Sbjct: 30 LQYGDKGRNVIAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDGIIGPAT 87 Query: 162 LEAMNVPVDLRIRQLQVNLM 181 A+ L N Sbjct: 88 YNALMGAPRTTKTVLSNNAA 107 >gi|227889892|ref|ZP_04007697.1| S41A family carboxy-terminal peptidase [Lactobacillus johnsonii ATCC 33200] gi|227849336|gb|EEJ59422.1| S41A family carboxy-terminal peptidase [Lactobacillus johnsonii ATCC 33200] Length = 483 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G + FD ++AV FQ HGL G+V+ Sbjct: 394 LKKSMTGVDVATLQQYLTALGYMPKYVT--GVFDDKTKNAVIEFQKAHGLTADGIVNGQV 451 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V +++ L + L + M Sbjct: 452 QAQLYLAVAQKLQDDNSALKKAMSLNLKDMED 483 >gi|156743286|ref|YP_001433415.1| peptidoglycan binding domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156234614|gb|ABU59397.1| Peptidoglycan-binding domain 1 protein [Roseiflexus castenholzii DSM 13941] Length = 629 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 95 PELPIRPLHLGNSSV-SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P+ L G+S + L+ERL G P+ + F ++A + FQ RHGL Sbjct: 94 PQSSRPTLRQGSSHAEDITFLQERLNSDG-ATPALEVDGIFGPLTDAATREFQRRHGLIV 152 Query: 154 SGMVDSSTLEAMNV 167 G+V T A+N Sbjct: 153 DGIVGPQTWGALNA 166 >gi|38234908|ref|NP_940675.1| putative hydrolase [Corynebacterium diphtheriae NCTC 13129] gi|38201173|emb|CAE50897.1| Putative hydrolase [Corynebacterium diphtheriae] Length = 402 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 26/170 (15%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRF------DNFLARVDMGIDSDIPIISKE 73 L S V + I E ++ + + D DS+ + E Sbjct: 3 LAKERSSVSGTLRVGDRSPRIAEVRTALTRLGLLEGTTKNLEQTKSDTFTDSE--TLFDE 60 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGNS-----------SVSVQRLRER 117 +A + + I++ G E+ ++ L LG V +L+ + Sbjct: 61 DLALALQGFQQARGIIASGEINEITLKLLREASYSLGARVLSFEPNNIFVGDDVVQLQHQ 120 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L G + + F +++ +Q+ +GL+P G+ T+ A Sbjct: 121 LQELGFY--TDRVDGRFGELTYTSLVNYQLNYGLNPDGICGPETIRAFGR 168 >gi|222080789|ref|YP_002542517.1| hypothetical protein Arad_10009 [Agrobacterium radiobacter K84] gi|221725468|gb|ACM28557.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 331 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 18/142 (12%) Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM------IDE 276 + DR+ + S I R + + P +I+ L + Sbjct: 177 KDDRRASLARSPIPRTVVSFSGYDPGTIVISTKEKRLYLVLNDGTALKYGIGVGKQGFAW 236 Query: 277 KGKEVFVEEVDWNSPEPPN--------FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 KG E + +W + PP R D G N + + + +H T E Sbjct: 237 KGTETISRKAEWPTWTPPKEMIARRPELPDRMDGGLNNPLGARALYLG-STLYRIHGTNE 295 Query: 329 PILFNNVVRFETSGCVRVRNII 350 P +SGC+R+ N Sbjct: 296 PNSIGK---AVSSGCIRMANPD 314 >gi|169632015|ref|YP_001705664.1| N-acetylmuramoyl-L-alanine amidase CwlM [Mycobacterium abscessus ATCC 19977] gi|169243982|emb|CAM65010.1| N-acetylmuramoyl-L-alanine amidase CwlM [Mycobacterium abscessus] Length = 395 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHG 150 + G+ +V +RE L G L+ + FDA ++ AV+ FQ G Sbjct: 5 ASNIRHGDRGPAVTEVREVLTALGFLEDPDEVLATGRHVMVDRFDATLDDAVRAFQQCRG 64 Query: 151 LDPSGMVDSSTLE 163 L G+V +T Sbjct: 65 LLVDGIVGPATYR 77 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 10/98 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I+ T ++A Y+ + +R + + V L++RL G + Sbjct: 70 IVGPATYRTLKEA--SYR-LGARTLFHQFSAP-----MYGDDVATLQKRLQDLGFY--TG 119 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + F +++ +Q +GL G+ TL + Sbjct: 120 LVDGNFGLQTYNSLMSYQREYGLTADGICGPETLRSFQ 157 >gi|258591429|emb|CBE67730.1| General secretion pathway protein A [NC10 bacterium 'Dutch sediment'] Length = 574 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 6/99 (6%) Query: 82 IAFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 I Y D W PEL P+ G V+ LRER + FD + Sbjct: 472 IDRYWDGPFILLWKAPELSSVPIRPGARGKDVEWLRERFAEFDGVPGGGRDRQVFDNDLR 531 Query: 140 SAVKLFQMRHGLDPSGMVDSSTL----EAMNVPVDLRIR 174 + V FQ L G+V TL A P R+R Sbjct: 532 TRVIAFQRSRSLTADGVVGKETLTHLSAAQRDPKVPRLR 570 >gi|256785652|ref|ZP_05524083.1| lipoprotein [Streptomyces lividans TK24] Length = 270 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 4/138 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ L+ RL L G + +D E AV FQ + GL +G D+ T Sbjct: 66 KRGDTGRDVRELQARLRQVEWLV--DGPTGTYDDLTERAVSGFQGKRGLPRTGRTDTVTW 123 Query: 163 EAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + + + + + R + V+ + +L + +G+ +V Sbjct: 124 QRLLGMSHEPGKWDLYLMGGQPAAAPDPRCTSGRVLCVSKSSRTLRWMIDGRTVSTMSVR 183 Query: 221 VGRVDRQTPILHSRINRI 238 G T ++ Sbjct: 184 FGSQYTPTREGVFQVYWK 201 >gi|168184305|ref|ZP_02618969.1| zinc carboxypeptidase family protein [Clostridium botulinum Bf] gi|237794727|ref|YP_002862279.1| zinc carboxypeptidase family protein [Clostridium botulinum Ba4 str. 657] gi|182672655|gb|EDT84616.1| zinc carboxypeptidase family protein [Clostridium botulinum Bf] gi|229260492|gb|ACQ51525.1| zinc carboxypeptidase family protein [Clostridium botulinum Ba4 str. 657] Length = 423 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGLIDGIFGSKTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LE 163 E Sbjct: 62 YE 63 >gi|258508400|ref|YP_003171151.1| carboxyl-terminal protease [Lactobacillus rhamnosus GG] gi|257148327|emb|CAR87300.1| Carboxyl-terminal protease [Lactobacillus rhamnosus GG] gi|259649714|dbj|BAI41876.1| protease [Lactobacillus rhamnosus GG] Length = 480 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD SG Sbjct: 390 INATQLKPGDKGSDVKSLQQMLKAL--KIGSATVNGQYDDATQAAVKSFQEANELDASGT 447 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 448 ADQDTLAALAQKLSAQLTK 466 >gi|328911454|gb|AEB63050.1| L,D-transpeptidase [Bacillus amyloliquefaciens LL3] Length = 160 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 16/128 (12%) Query: 236 NRIMFNPY--WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + I+ N IP SI+ L+ L + + V ++ +P Sbjct: 44 HIIIPNLPDPSTIPYSIVVYIGAKKLQ-----LYRLGRLIRTY---PIAVGKILTTTPTG 95 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IID 351 +I + P + + + +H T +P + GC+R+ N + + Sbjct: 96 EFYIVNRQPKPGGPFGAYWLSLSKLH-YGIHGTNDPSSIGK---AVSKGCIRMHNQDVTE 151 Query: 352 LDVWLLKD 359 L + + Sbjct: 152 LAATVPRR 159 >gi|325915197|ref|ZP_08177520.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325538557|gb|EGD10230.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 341 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G VQ L++ L G D F AV FQ +HGL G+V Sbjct: 149 LKRGIRGDEVQSLQQDLNRLGVRDTQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVG 208 Query: 159 SSTLEAMNVP 168 T A++ P Sbjct: 209 RDTRAALSAP 218 >gi|269955412|ref|YP_003325201.1| ErfK/YbiS/YcfS/YnhG family protein [Xylanimonas cellulosilytica DSM 15894] gi|269304093|gb|ACZ29643.1| ErfK/YbiS/YcfS/YnhG family protein [Xylanimonas cellulosilytica DSM 15894] Length = 326 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 67/255 (26%), Gaps = 72/255 (28%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P P G++ V L++RL+ G + + AV FQ GL Sbjct: 124 PPAPQYPQR-GSTGPEVLALQQRLMDLGYF--ILKADGDYGWATQQAVWAFQKAAGLYRD 180 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+V T A++ + + V +++ L AVE+G+V Sbjct: 181 GVVGPQTQAALDAGYRP---------------TPRSSSGKVVEIDLDKQILLAVEDGRVV 225 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 G + + PR Y++ + +H Sbjct: 226 RIINASSGNGETYEAKGRTY--------RATTPRGDFA-----------VYMQRDGMH-- 264 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 + Y R +H + Sbjct: 265 ----------------------------SSTLELGDMWRPKYFRGGYAVHGSSS-----I 291 Query: 335 VVRFETSGCVRVRNI 349 + GCVRV N Sbjct: 292 PTYPASHGCVRVSNA 306 >gi|88808386|ref|ZP_01123896.1| hypothetical protein WH7805_01812 [Synechococcus sp. WH 7805] gi|88787374|gb|EAR18531.1| hypothetical protein WH7805_01812 [Synechococcus sp. WH 7805] Length = 218 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 33/161 (20%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L + +G + R VG V +TP R+ +++ P W P S + + + + Sbjct: 84 RQLLVLHDGLLTRRFPAAVGTVGWETPSGRFRVMQMVKEPVWTHPVS--GELLGPEVANN 141 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 P + H D KG++ W+ + + G Sbjct: 142 PLGSRWIGFH-RDCKGRK------GWDGEQYLDIDGCTVAG------------------- 175 Query: 323 MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 H TP R + GCVR+ N+ ++ + TP Sbjct: 176 FHGTPYRWTVG---RAVSHGCVRLYEENVQEIFEMVRIGTP 213 >gi|167037413|ref|YP_001664991.1| SpoIID/LytB domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115826|ref|YP_004185985.1| SpoIID/LytB domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856247|gb|ABY94655.1| SpoIID/LytB domain [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928917|gb|ADV79602.1| SpoIID/LytB domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 762 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 2/98 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ L+ L G + + F + AV FQ + L P G+V Sbjct: 216 TRTLKYGMQGNDVKELQNALAKLGYF--NTTPTGYFGSITRDAVIKFQKANNLTPDGIVG 273 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 T +A+ + + +Q K Sbjct: 274 PLTQKAIQGLLAGKDQQASQPTDSPKIQYPSGFSRNMK 311 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 12/130 (9%) Query: 47 IVNDRFDNFLARVDMGIDSDIPIISKETIAQT-EKAIA-FYQDILSRGG--------WPE 96 D F M + D ++ EKA+ I Sbjct: 55 NPTDYFGPATKNAVMRLQKDYNLVPDGIYGPLTEKALMDKLNAISKATTQTSNTSLQTQS 114 Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G V+ L+ L G + + F + AV FQ + L P G+ Sbjct: 115 TVTRTLKYGMQGNDVKELQNALAKLGYF--NTTPTGYFGSITRDAVIKFQKANNLTPDGI 172 Query: 157 VDSSTLEAMN 166 V T +A++ Sbjct: 173 VGPLTQKAIS 182 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R + G++ V+ L+ L G ++ +D +AV FQ + L G+ Sbjct: 307 SRNMKKGDTGDDVKLLQTLLKEIGYYTKD--ITGTYDDNTLNAVMDFQKYYSLAVDGIAG 364 Query: 159 SSTLEAM 165 +T+ + Sbjct: 365 INTITKV 371 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++ L +G + F ++AV Q + L P G+ T Sbjct: 29 LKYGMRSPEVRHLQQNLNKAGYFVTANPTD-YFGPATKNAVMRLQKDYNLVPDGIYGPLT 87 Query: 162 LEAM--------NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN--- 210 +A+ LQ + L G + A L Sbjct: 88 EKALMDKLNAISKATTQTSNTSLQTQSTVTRTLKYGMQGNDVKELQNALAKLGYFNTTPT 147 Query: 211 ---GKVGLRSTVIVGRVDRQTPIL-HSRINRIMFNPYWVI 246 G + + + + + TP + + + + Sbjct: 148 GYFGSITRDAVIKFQKANNLTPDGIVGPLTQKAISEKLNV 187 >gi|89894299|ref|YP_517786.1| hypothetical protein DSY1553 [Desulfitobacterium hafniense Y51] gi|219668710|ref|YP_002459145.1| NLP/P60 protein [Desulfitobacterium hafniense DCB-2] gi|89333747|dbj|BAE83342.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538970|gb|ACL20709.1| NLP/P60 protein [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 17/129 (13%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ +V L+ L G + F A ++AV+ FQ + G+V T Sbjct: 30 LKVGSRGSAVSTLQSNLQTLGY--EVGPIDGIFGAKTKTAVQKFQTASRIQVDGIVGPQT 87 Query: 162 LEAMNV---------------PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 +A+ + + + + G + + Sbjct: 88 QQALTKALGSKTTALESKSTANPSQKTQAILSTAKNYTGVPYLWGGTTPSGFDCSGFTQY 147 Query: 207 AVENGKVGL 215 E + L Sbjct: 148 VFEKNGITL 156 >gi|332711683|ref|ZP_08431614.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349661|gb|EGJ29270.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 542 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 9/88 (10%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + Y + ++ P + LG+ V RL+ L G + + Sbjct: 33 FSNLKTVQGRYSEEIALP--PTV-----RLGSQGEVVTRLQTILQQLGYYQQ--PVDGVY 83 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + +AV FQ GL+ G+V T Sbjct: 84 GSNTFAAVSTFQQALGLNADGIVGPITW 111 >gi|290955397|ref|YP_003486579.1| hypothetical protein SCAB_8241 [Streptomyces scabiei 87.22] gi|260644923|emb|CBG68009.1| putative membrane protein [Streptomyces scabiei 87.22] Length = 265 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L G+S V L++RL+ D+ S +D ++ AV FQ+ +G+ G+ Sbjct: 191 AGTLREGDSGPQVSELQQRLLRIPDVYAGGSTSGRYDGVLKDAVARFQLWYGIRGDETGV 250 Query: 157 VDSSTLEAMN 166 + T + + Sbjct: 251 YGNDTRQDLE 260 >gi|255283144|ref|ZP_05347699.1| putative peptidoglycan binding domain protein [Bryantella formatexigens DSM 14469] gi|255266217|gb|EET59422.1| putative peptidoglycan binding domain protein [Bryantella formatexigens DSM 14469] Length = 1954 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 17/154 (11%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSI--VNDRFDNFLARVDMGIDSDIPIISKETIA 76 + + + I V ++ I E S D ++ S + Sbjct: 378 WDKLTGKIKDAGIETDVFEDKIKEVARSSNVPIDALVQKYGSLEKAFQS-----GAISAN 432 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGN----SSVSVQRLRERLIISGDLDPSKGLSV 132 +AI + G+ +S V+++++ L +G G+ Sbjct: 433 ILREAIKQLSSGVLD------LDGVFRFGDGLDEASDDVKKIQQALEDAGFTLTQFGVDG 486 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + + E+AVK FQ GL G+V T+ A+N Sbjct: 487 KYGSETEAAVKAFQEAEGLLADGIVGPETIAALN 520 >gi|229543921|ref|ZP_04432980.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus coagulans 36D1] gi|229325060|gb|EEN90736.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus coagulans 36D1] Length = 167 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 44/164 (26%), Gaps = 59/164 (35%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G ++VN L + GKV L + V G+ + TP I NP Sbjct: 24 PGDPLIIVNKTTNRLAWIRGGKVRLETPVATGKTNDLTPEGFFTIKVKAKNP-------- 75 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMA 309 Y + NI G N + Sbjct: 76 --------------YYRKKNI-----------------------------PGGDPRNPLG 92 Query: 310 STKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 S I F +H T P R+ ++GC+R+ Sbjct: 93 SRWIGFDARGTDGRIYGLHGTNNPASIG---RYISNGCIRLPKA 133 >gi|85714009|ref|ZP_01044998.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] gi|85699135|gb|EAQ37003.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] Length = 172 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 45/193 (23%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY---VLVNIPAASLEAVENGKVGLRS 217 T A + L + + + + G ++V L + + LR Sbjct: 3 TRAAAVLAALWGAGLLAIVPAEARPDMVRYQGDYAPGTIVVRTNERRLYLIIDSGRALRY 62 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V VG+ +Q +RI +P W P + + + + Sbjct: 63 PVGVGKAGKQ-WTGTARIEGKYRDPAWAPPEDVKRDN--PKIANVIA------------- 106 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 N M + +H T P R Sbjct: 107 -----------------------GGSPANPMGVAAMTLSGGGQYAIHGTNRPGTIG---R 140 Query: 338 FETSGCVRVRNII 350 F + GC+R+ N Sbjct: 141 FVSYGCIRMYNAD 153 >gi|309810394|ref|ZP_07704228.1| Tat pathway signal sequence domain protein [Dermacoccus sp. Ellin185] gi|308435634|gb|EFP59432.1| Tat pathway signal sequence domain protein [Dermacoccus sp. Ellin185] Length = 233 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 59/246 (23%), Gaps = 73/246 (29%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ +V L++RL G + AF A + AV Q GL G+V + Sbjct: 38 VLQTGSKGSAVTTLQKRLNALGYWCGNP--DGAFGAQTKQAVLAVQKVAGLARDGVVGAR 95 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + +A+N V + G + V+ + V G V Sbjct: 96 SWDALNRGVR----------------PSSRRGGNRIEVDKSRQIVMVVRGGSVKYIFNTS 139 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 G + K Sbjct: 140 TG--------------------------------------------NGQTFTYYGRRIKA 155 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 V E + A+ FY +H + + + Sbjct: 156 VTPSG------EYKTYRSVTSGWDYGALGGLYRPFYFNGGIALHGSND-----IPAYPAS 204 Query: 341 SGCVRV 346 GC R+ Sbjct: 205 HGCCRM 210 >gi|303229441|ref|ZP_07316231.1| putative protein P60 [Veillonella atypica ACS-134-V-Col7a] gi|302515977|gb|EFL57929.1| putative protein P60 [Veillonella atypica ACS-134-V-Col7a] Length = 264 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V ++++LI G + + + + AV+LFQ GL G++ +T Sbjct: 30 LQYGDKGRNVIAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDGIIGPAT 87 Query: 162 LEAMNVPVDLRIRQLQVN 179 A+ L N Sbjct: 88 YNALMGAPRTTKAVLSNN 105 >gi|28210107|ref|NP_781051.1| spore-cortex-lytic enzyme precursor [Clostridium tetani E88] gi|28202543|gb|AAO34988.1| spore-cortex-lytic enzyme precursor [Clostridium tetani E88] Length = 255 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V ++++L G D S + + AVK FQ ++GL+ G+ + TL A Sbjct: 67 GSKGGDVSEIQKKLKNWGYYDGS--VDGIYGYKTFLAVKKFQGKNGLNVDGVAGNKTLAA 124 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V N I L G Sbjct: 125 LGINVAQAQGSNTSNNQDINLLARLINGE 153 >gi|148258177|ref|YP_001242762.1| hypothetical protein BBta_6969 [Bradyrhizobium sp. BTAi1] gi|146410350|gb|ABQ38856.1| hypothetical protein BBta_6969 [Bradyrhizobium sp. BTAi1] Length = 219 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + R G N + + I +++ Y +H T +P +SGC+R+ Sbjct: 124 QARLGPYPKRVPGGPANPLGARAIYLYEGNKDTLYRIHGTNQPEYIGQ---AISSGCIRM 180 Query: 347 RN 348 N Sbjct: 181 TN 182 >gi|332982674|ref|YP_004464115.1| cell wall hydrolase SleB [Mahella australiensis 50-1 BON] gi|332700352|gb|AEE97293.1| cell wall hydrolase SleB [Mahella australiensis 50-1 BON] Length = 238 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 8/161 (4%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG+ L +G+S V +L+ L G ++ + + AV FQ G Sbjct: 30 SGGYTHAASTILKVGSSGSQVSQLQTALKQQGYF--YANVTGYYGSLTRDAVIRFQKDRG 87 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNL-MRIKKLL---EQKMGLRYVLVNIPAASLE 206 L G+ TL A+ R N I L E + G L + ++ Sbjct: 88 LAADGIAGPQTLNALYGASSTANRGTTGNYREDIYWLARIIEAEAGAEPYLGKVAVGNVI 147 Query: 207 AVENGKVGL--RSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 ++ P + ++N Sbjct: 148 MNRVKSPNFANSVKAVIFEDYHGIPQFSPVADGTIYNTPST 188 >gi|158321567|ref|YP_001514074.1| peptidoglycan binding domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141766|gb|ABW20078.1| Peptidoglycan-binding domain 1 protein [Alkaliphilus oremlandii OhILAs] Length = 198 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+S V RL+ L+ +G + F + SAV FQ + G+V T Sbjct: 71 LSMGSSGPDVTRLQHLLMSAGY--NPGPIDGIFGSMTHSAVMAFQRDSHIAVDGIVGPRT 128 Query: 162 LEAMNVP 168 A+ V Sbjct: 129 WTALGVN 135 >gi|311279034|ref|YP_003941265.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308748229|gb|ADO47981.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 313 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IIINVAEMRLYYYPPGGNTVQVLPIGIGQAGRETPRNWVTAVERKQEGPTW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPENPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R + Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQV 230 >gi|331658059|ref|ZP_08359021.1| protein ErfK/srfK [Escherichia coli TA206] gi|331056307|gb|EGI28316.1| protein ErfK/srfK [Escherichia coli TA206] Length = 307 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R + Sbjct: 183 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQV 230 >gi|329667436|gb|AEB93384.1| DNA protecting protein [Lactobacillus johnsonii DPC 6026] Length = 483 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G + ++ FD ++AV FQ HGL G+V+ Sbjct: 394 LKKSMTGVDVATLQQYLTALGYMPK--HVTGVFDDETKNAVIEFQKAHGLTADGIVNGQV 451 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V +++ L + L + M Sbjct: 452 QAQLYLAVAQKLQDDNPALKKAMSLNLKDMED 483 >gi|295705154|ref|YP_003598229.1| cell wall endopeptidase [Bacillus megaterium DSM 319] gi|294802813|gb|ADF39879.1| cell wall endopeptidase [Bacillus megaterium DSM 319] Length = 391 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L LH G S+ V+ L+++L G + + + SAVK FQ +GL G Sbjct: 24 ALGDATLHPGTSNSDVKELQQKLKNKGYFT-YGTTTNYYGSITTSAVKSFQRANGLSADG 82 Query: 156 MVDSSTLE 163 + ST Sbjct: 83 IAGPSTFN 90 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G++ +VQ L+++L G + F + ++AV FQ +GL G+ +TL Sbjct: 110 RVGSTGPNVQSLQQQLKNKGYFK--GTTTQYFGSITKNAVMAFQRANGLSVDGIAGPATL 167 Query: 163 EAMN 166 + Sbjct: 168 SKLK 171 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G +V L+++L G G++ F + SAVK FQ +GL G T Sbjct: 190 LRQGMKGSAVSSLQQKLKNKGYFS--AGVTGYFGSITTSAVKSFQRANGLLVDGEAGPDT 247 Query: 162 LEAMN 166 L +N Sbjct: 248 LNKLN 252 >gi|294499766|ref|YP_003563466.1| cell wall endopeptidase [Bacillus megaterium QM B1551] gi|294349703|gb|ADE70032.1| cell wall endopeptidase [Bacillus megaterium QM B1551] Length = 388 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L LH G S+ V+ L+++L G + + + SAVK FQ +GL G Sbjct: 24 ALGDATLHPGTSNSDVKELQQKLKNKGYFT-YGTTTNYYGSITTSAVKSFQRANGLSADG 82 Query: 156 MVDSSTLE 163 + ST Sbjct: 83 IAGPSTFN 90 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G++ +VQ L+++L G + F + ++AV FQ +GL G+ +TL Sbjct: 107 RVGSTGPNVQSLQQQLKNKGYFK--GTTTQYFGSITKNAVMAFQRANGLSVDGIAGPATL 164 Query: 163 EAMN 166 + Sbjct: 165 SKLK 168 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G +V L+++L G G++ F + SAVK FQ +GL G T Sbjct: 187 LRQGMKGSAVSSLQQKLKNKGYFS--AGVTGYFGSITTSAVKSFQRANGLLVDGEAGPDT 244 Query: 162 LEAMN 166 L +N Sbjct: 245 LNKLN 249 >gi|115379890|ref|ZP_01466951.1| hypothetical protein STIAU_1822 [Stigmatella aurantiaca DW4/3-1] gi|310817668|ref|YP_003950026.1| hypothetical protein STAUR_0390 [Stigmatella aurantiaca DW4/3-1] gi|115363106|gb|EAU62280.1| hypothetical protein STIAU_1822 [Stigmatella aurantiaca DW4/3-1] gi|309390740|gb|ADO68199.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 586 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPS--KGLSVAFDAYVESAVKLFQMRHGLDP 153 LP + L G+ V++L++ L+ G + + F E+A+K FQ HG+D Sbjct: 326 TLPNQQLKRGSKGEGVEKLQDALVKLGYMTKAQVATGPGTFGPKTEAALKKFQKDHGVDA 385 Query: 154 SGMVDSSTLEAMNV 167 G T A Sbjct: 386 IGEYGPKTRAAFEK 399 >gi|323701875|ref|ZP_08113545.1| spore cortex-lytic enzyme [Desulfotomaculum nigrificans DSM 574] gi|323533179|gb|EGB23048.1| spore cortex-lytic enzyme [Desulfotomaculum nigrificans DSM 574] Length = 225 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L R L LG VQ+L+ L G + F +AVK FQ R+GL G+ Sbjct: 18 LGDRTLKLGMEGYDVQQLQRNLGYLGY--NVGQVDGYFGWQTWAAVKEFQWRNGLSVDGI 75 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 V +T A+ V Q + L+ Y L + Sbjct: 76 VGVATANAIINQVSGGQAQRPRITSASRGYLQLSRQDLYDLARV 119 >gi|218677982|ref|ZP_03525879.1| putative ErfK/YbiS/YhnG family protein [Rhizobium etli CIAT 894] Length = 133 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 40/144 (27%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V G R V VG+ + +I R P W P +I ++ Sbjct: 11 LYLVMAGGKARRYGVGVGKPGFE-WAGVHKITRKTEWPDWTPPAEMISRE---------- 59 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + R D G+ N + + + +H Sbjct: 60 -AAKGHY------------------------LPARMDGGEENPLGARAMYLG-STLYRIH 93 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T P + +SGC+R+RN Sbjct: 94 GTNAPWSIGS---AVSSGCIRLRN 114 >gi|295399077|ref|ZP_06809059.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus thermoglucosidasius C56-YS93] gi|312110319|ref|YP_003988635.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y4.1MC1] gi|294978543|gb|EFG54139.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215420|gb|ADP74024.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y4.1MC1] Length = 167 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 47/176 (26%), Gaps = 61/176 (34%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +V++N L ++NGK+ V G TP + NP Sbjct: 26 QPFVIINKAVNQLALIDNGKIETVYPVATGVNTLLTPEGMFTVTVKAKNP---------- 75 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMAST 311 Y + NI G N + + Sbjct: 76 ------------YYRKKNI-----------------------------PGGAPDNPLGTR 94 Query: 312 KIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 I F ++ +H T P + + GCVR+ N + L + T Sbjct: 95 WIGFNAKGTDGRVYGIHGTNNPPSIGK---YVSQGCVRMYNHDVEQLYEKVPIGTK 147 >gi|150392091|ref|YP_001322140.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] gi|149951953|gb|ABR50481.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] Length = 253 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + G+ V ++ RL G L+ L + +E A+ FQ H L S +++ Sbjct: 183 QTIKPGDFGADVMEIQSRLRALGYLNTD-YLDGKYGPMMERALYEFQKDHNLPESAVIEW 241 Query: 160 STLEAMNV 167 T +A+ V Sbjct: 242 QTFQALGV 249 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 21/132 (15%) Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE---KGKEVFVEEVDWNSPE 292 ++++ I+ + L YL + N + GK + Sbjct: 51 HQMLEENPNYENVKILVDISVKKL-----YLLNGNELLKTYTIASGKPSTPSPLGSWE-- 103 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--I 349 Q A + + +H T +P ++GC+R+ N + Sbjct: 104 -----VIQKARWGGAFGTRWMGINVPWGKYGIHGTDKPNSIGYN---ASAGCIRMNNRDV 155 Query: 350 IDLDVWLLKDTP 361 DL ++ TP Sbjct: 156 EDLYQYVKNGTP 167 >gi|307149992|ref|YP_003885376.1| peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7822] gi|306980220|gb|ADN12101.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7822] Length = 516 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 7/99 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L++ L + F + AVK FQ+R GL G V S T Sbjct: 285 LRWGDKGDDVKALQQALNRLNF--NAGAADGDFGDQTQEAVKAFQLRSGLLVDGEVGSVT 342 Query: 162 LEAMNVPVDLRIRQLQ-----VNLMRIKKLLEQKMGLRY 195 E + + + L +++ +Y Sbjct: 343 WEKLGGTGKVILPNLASFAASEAAKKLRWNGASSDAEKY 381 >gi|304404834|ref|ZP_07386495.1| spore cortex-lytic enzyme [Paenibacillus curdlanolyticus YK9] gi|304346641|gb|EFM12474.1| spore cortex-lytic enzyme [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G SV V L+ RL + G P ++ + + AV+ FQ +GL G+ S Sbjct: 32 ALRYGYQSVDVPDLQFRLKVLGYFKP-AQVTTYYGMMTQDAVERFQSDYGLPADGVAGSK 90 Query: 161 TLEAMNV 167 T + Sbjct: 91 TWSLLKR 97 >gi|172041696|ref|YP_001801410.1| putative hydrolase [Corynebacterium urealyticum DSM 7109] gi|171853000|emb|CAQ05976.1| putative hydrolase [Corynebacterium urealyticum DSM 7109] Length = 408 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 32/180 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG------------LSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G L FDA + +A++ FQ + Sbjct: 21 LTVGDKSPRVAEVRSALARLGMLSDYGAALTASNNEQWSEEEEFFDAVLATALRAFQQQR 80 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 G+ G+++ +TL A+ R ++ + Q +G + L Sbjct: 81 GIIADGVINETTLRAL------REASYKLGNRVLSLQDPQYVGDDVSELQSQLYDLGFY- 133 Query: 210 NGKVGLRSTVIVGRV-------------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 G+V + P + + P SI +K+M+ Sbjct: 134 TGRVDGHFGPDTHQAVTQYQFEYGLNSDGMVGPDTLRALAYLGRRITGGSPHSIREKEMI 193 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 45/155 (29%), Gaps = 21/155 (13%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGI----DSDIPIISKETIAQTEKAIAFYQ 86 + + E ++ + S+ +A +A + Sbjct: 21 LTVGDKSPRVAEVRSALARLGMLSDYGAALTASNNEQWSEEEEFFDAVLATALRAFQQQR 80 Query: 87 DILSRG-----GWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLS 131 I++ G L LGN V L+ +L G + + Sbjct: 81 GIIADGVINETTLRALREASYKLGNRVLSLQDPQYVGDDVSELQSQLYDLGFY--TGRVD 138 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F AV +Q +GL+ GMV TL A+ Sbjct: 139 GHFGPDTHQAVTQYQFEYGLNSDGMVGPDTLRALA 173 >gi|170744639|ref|YP_001773294.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168198913|gb|ACA20860.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 271 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 39/189 (20%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 R ++ +R + V+++ A L V+ G R V VGR Sbjct: 103 PAFRWQRANPAFLRQDVAYGGRYEPGTVVIDPRAHHLYLVQPGGRARRYGVGVGRQGFA- 161 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 ++ IN P W P+ +I + L + L+ Sbjct: 162 WSGNATINSKQAWPDWYPPKEMIARQ--PALARQVSQLQSG------------------- 200 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + + + +++ Y +H T EP R +SGC+R Sbjct: 201 ---------LGVPGGPHNPLGARAMYLWQNNKDTLYRIHGTTEPESIG---RSVSSGCIR 248 Query: 346 V--RNIIDL 352 + +++IDL Sbjct: 249 MINQDVIDL 257 >gi|308068719|ref|YP_003870324.1| spore cortex-lytic enzyme precursor (Germination-specific amidase) [Paenibacillus polymyxa E681] gi|305857998|gb|ADM69786.1| Spore cortex-lytic enzyme precursor (Germination-specific amidase) [Paenibacillus polymyxa E681] Length = 283 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 9/161 (5%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ P + G+ V L+ RL + G + F + AVK FQ Sbjct: 44 AAQPSQPTFSSGAVDFGSYGQDVYELQSRLKLLGFF--GGKVDSHFGSSTLKAVKGFQKE 101 Query: 149 HGLDPSGMVDSST-LEAMNVPV--DLRIRQLQVNLM---RIKKLLEQKMGLRYVLVNIPA 202 G+ P G+V T L+ +N + N + + + A Sbjct: 102 FGIRPDGVVGPKTKLKLVNATPNWKPTETPMHRNNQGSAQGQAADNNDKADQNDETMGSA 161 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 ++ EN + + + G + + ++ N Sbjct: 162 NTMGLSENDLKIM-ANAVYGESRGEPFEGQVAVAAVILNRV 201 >gi|148257457|ref|YP_001242042.1| hypothetical protein BBta_6213 [Bradyrhizobium sp. BTAi1] gi|146409630|gb|ABQ38136.1| hypothetical protein BBta_6213 [Bradyrhizobium sp. BTAi1] Length = 231 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 54/194 (27%), Gaps = 48/194 (24%) Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + TL +L L R + V+++ P L V + Sbjct: 53 VAEPQTLAPSEDDAT--AYELPARLRRQVVNYATREAPGTVIIDTPNTYLYYVLGNGQAM 110 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 R + VGR D T + R P W P +I + YL + Sbjct: 111 RYGIGVGR-DGFTWSGTQSVTRKAEWPDWTPPPEMIARQP---------YLPRH------ 154 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNN 334 G N + + + Y +H T +P Sbjct: 155 ------------------------MAGGPGNPLGARAMYL--GGTIYRIHGTNQPATIGT 188 Query: 335 VVRFETSGCVRVRN 348 +SGC+R+ N Sbjct: 189 ---HVSSGCIRLTN 199 >gi|290510824|ref|ZP_06550194.1| ycfS [Klebsiella sp. 1_1_55] gi|289777540|gb|EFD85538.1| ycfS [Klebsiella sp. 1_1_55] Length = 321 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ TP + + ++ NP W Sbjct: 98 DAPREGLVINLAELRLYYYPPGKNEVTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + G N Sbjct: 158 TANIRAR-----------------------------------YKAMGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|251794953|ref|YP_003009684.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. JDR-2] gi|247542579|gb|ACS99597.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. JDR-2] Length = 341 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 89/318 (27%), Gaps = 68/318 (21%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y+ + G P L G+ V +L+ L++ D F + +S Sbjct: 60 YEQVAKVNG--LNPTGSLKAGS----VIKLKSPLVL--DYYEVLPGDTLF-SITKS---Y 107 Query: 145 FQMRHGLDP----SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 F + +D +G+ D +T + + ++ L G +V+ Sbjct: 108 FNRSNYMDTLMTYNGITDPNTELHIGMT--------------LRIPLPSGEGRHHVVKGD 153 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA--- 257 SL + + V + + + + + + A Sbjct: 154 TLYSLSVKYFKSLDYQKAVAQTNGVGTAASMIQAGQELQIPNPYYMAAAKSGNTVAATTS 213 Query: 258 -------LLRQDPQYLKDNN-----IHMIDEKGKEVFVE---------EVDWNSPEPPNF 296 + ++ Y+K + K + E W S + Sbjct: 214 TKLSIDIDITKNKLYVKSGGTVKKTFDIASGKKAGLTPTGTFEILTKIENPWYSAKGIP- 272 Query: 297 IFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 N + S + N +H T P ++GC+R+ N Sbjct: 273 ----GGDPKNPLGSRWLGISVPNTQGTKYGIHGTNAPSSIGTN---ASAGCIRMLNED-- 323 Query: 353 DVWLLKDTPTWSRYHIEE 370 WL PT ++ I + Sbjct: 324 VEWLYNAVPTGTKVTIHK 341 >gi|206558510|ref|YP_002229270.1| putative phage-encoded peptidoglycan binding protein [Burkholderia cenocepacia J2315] gi|198034547|emb|CAR50412.1| putative phage-encoded peptidoglycan binding protein [Burkholderia cenocepacia J2315] Length = 283 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LG+ V L+ RLI +G + ++ +DA E+AV Q + GL G+ Sbjct: 2 KTRRLGDHGDDVGLLQRRLIRAGY---AVQITHLYDAATEAAVIALQRKTGLVDDGIAGP 58 Query: 160 STLEAMNVPVDLRIRQLQVNLMR 182 T A+ + +L R Sbjct: 59 KTYAALATGLRDPKHLGLADLER 81 >gi|39937280|ref|NP_949556.1| ErfK/YbiS/YcfS/YnhG protein [Rhodopseudomonas palustris CGA009] gi|39651138|emb|CAE29661.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] Length = 255 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 50/182 (27%), Gaps = 46/182 (25%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 QL L R K ++++ L V G +R V VGR T Sbjct: 77 AQLPDRLRRAVISYPTKEPAGTIVIDTANTYLYYVLGGGRAIRYGVGVGREG-FTWAGVQ 135 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 I R P W P +I + Sbjct: 136 TITRKAEWPDWRPPAEMIARQ--------------------------------------- 156 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IID 351 P G N + + + +H T +P F +SGC+R+ N + D Sbjct: 157 PYLPRFMAGGPGNPLGARAMYLG-STTYRIHGTNDPSTIGK---FVSSGCIRLTNEDVED 212 Query: 352 LD 353 L Sbjct: 213 LF 214 >gi|222106793|ref|YP_002547584.1| hypothetical protein Avi_5810 [Agrobacterium vitis S4] gi|221737972|gb|ACM38868.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 266 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 40/192 (20%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + + +A +P ++ + + + ++++ L V +G + R Sbjct: 96 LRPALQQASAMPAPRQMSATPAQFLPQVVAYQTREKPGTLVIDTNNRFLYLVMDGGMARR 155 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 V VG+ + ++ R P W+ P+ +I ++ + Sbjct: 156 YGVGVGKPGFE-WAGEHKVTRKTEWPEWIPPQEMIARE-----------AAKGHY----- 198 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 R G N + + + +H T P Sbjct: 199 -------------------LPARMQGGPENPLGARALYLG-STLYRIHGTNAPWTIGYG- 237 Query: 337 RFETSGCVRVRN 348 +SGC+R+RN Sbjct: 238 --VSSGCIRMRN 247 >gi|331663480|ref|ZP_08364390.1| protein ErfK/srfK [Escherichia coli TA143] gi|331059279|gb|EGI31256.1| protein ErfK/srfK [Escherichia coli TA143] Length = 310 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 49/172 (28%), Gaps = 44/172 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 H T F +R + GC+R+RN D +L + P +R Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTR 227 >gi|225572655|ref|ZP_03781410.1| hypothetical protein RUMHYD_00843 [Blautia hydrogenotrophica DSM 10507] gi|225039987|gb|EEG50233.1| hypothetical protein RUMHYD_00843 [Blautia hydrogenotrophica DSM 10507] Length = 610 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 23/175 (13%) Query: 9 KILYCFFVYLILPMGLS---LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 + Y+ + S +V + + +++ FD D Sbjct: 362 RNYPGIDGYVWIDYTDSSEAVVRDYLQLGDTGPAVKTMQQNLITLGFDVGAFGADG---- 417 Query: 66 DIPIISKETIAQTEKAIAFY-------------QDILSRGGWPELPIRPLHLGNSSVSVQ 112 ++T A ++A Y I + + L +G+ V+ Sbjct: 418 ---SFGQDTQAAVKQAQKKYGLTVDGFYGPDTKSKIEAAVKEQQAGKDFLCVGDQGGQVK 474 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ LI G + G F A E+AVK FQ GLD TL + Sbjct: 475 ELQSNLIYLGYDCGASGADGDFGADTEAAVKAFQKACGLDADSCAGPKTLAKIKA 529 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ +V+ +++ LI G + G +F ++AVK Q ++GL G T Sbjct: 387 LQLGDTGPAVKTMQQNLITLGFDVGAFGADGSFGQDTQAAVKQAQKKYGLTVDGFYGPDT 446 Query: 162 LEAMNVPVDL 171 + V Sbjct: 447 KSKIEAAVKE 456 >gi|294497041|ref|YP_003560741.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium QM B1551] gi|294346978|gb|ADE67307.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium QM B1551] Length = 178 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 17/120 (14%) Query: 255 MMALLRQDPQYLKDNNIHMIDE--KGKEVFVEEVDW----NSPEPPNFIFRQDPG--KIN 306 ++ Y + + GK V + N + + G N Sbjct: 39 IINKKTNQLAYFHNGKLEKTYSVATGKTWSDTPVGFFKIVNKIKNRPYYTGHIAGGAPNN 98 Query: 307 AMASTKIEFYS----RNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 + S + + + +H + + GCVR+ N +L + T Sbjct: 99 PLGSLWLGLNANGTTGDTYAIHGNNSEDSIGK---YVSHGCVRMHNADIEELFDKVAVGT 155 >gi|256825620|ref|YP_003149580.1| peptidoglycan-binding domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256689013|gb|ACV06815.1| putative peptidoglycan-binding domain-containing protein [Kytococcus sedentarius DSM 20547] Length = 279 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 69/252 (27%), Gaps = 72/252 (28%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ R L G+ + V + ++ +G + A E AV Q +GL G Sbjct: 40 QVQRRTLRKGDRNDDVLYFQRKIRSAGFWA--GTPDGVYGAQTEQAVWAVQKAYGLRRDG 97 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 +V +ST A + + RY+ +++ L V +G+V Sbjct: 98 VVGNSTWLAAIRQPR---------------IPVKTTKGRYIEIDLDRQLLFYVVDGQV-- 140 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 + T + + +N W + Sbjct: 141 -------KQVHNTSTGNGKGYW--YNKKWYPHAKTPRG---------------------- 169 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK-IEFYSRNNTYMHDTPEPILFNN 334 W S + +R + F++ +H F Sbjct: 170 -----------TWRSMWNTDSGWRV-----GQLGRMWRPYFFAPGGYAIHG----STF-I 208 Query: 335 VVRFETSGCVRV 346 ++ GC R+ Sbjct: 209 PPYPDSHGCARL 220 >gi|163758391|ref|ZP_02165479.1| hypothetical protein HPDFL43_02160 [Hoeflea phototrophica DFL-43] gi|162284680|gb|EDQ34963.1| hypothetical protein HPDFL43_02160 [Hoeflea phototrophica DFL-43] Length = 256 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 46/178 (25%), Gaps = 39/178 (21%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 RQL + +++N L V R V VG+ Sbjct: 99 KPARQLAPQFLPQTVAYNGGEKPGTIIINTHERFLYHVMGNGQARRYGVGVGKQGHA-WS 157 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 RI R P W P S+I++ Sbjct: 158 GTERITRKAEWPDWRPPASMIKRV----------------------------------RE 183 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 E G N + + + +H T +P +SGC+R+RN Sbjct: 184 QEGRILPAHMKGGPDNPLGARALYLG-STLYRIHGTNQPWTIGQ---AVSSGCIRMRN 237 >gi|206577781|ref|YP_002239266.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae 342] gi|288936123|ref|YP_003440182.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] gi|206566839|gb|ACI08615.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae 342] gi|288890832|gb|ADC59150.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] Length = 319 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ TP + + ++ NP W Sbjct: 96 DAPREGLVINLAELRLYYYPPGKNEVTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTP 155 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + G N Sbjct: 156 TANIRAR-----------------------------------YKAMGIELPAVVPAGPDN 180 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 181 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 220 >gi|86139725|ref|ZP_01058292.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. MED193] gi|85823616|gb|EAQ43824.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. MED193] Length = 248 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 55/225 (24%) Query: 139 ESAVKLFQMRHGLDPSGMVD---SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + A++ F R L +G + +T A V + R +N R + G + Sbjct: 53 DRAMQNF-TRRELICAGALGCFLPTTAWAHKVKLPERFEPQLINTRRDDWMN----GDIH 107 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V+ + L + + +R V VGR P ++R P+W ++I+++ Sbjct: 108 VVPD--DFFLYFMLEDGMAIRYGVGVGRKGLYEP-GEFTVDRKAKWPWWRPTNAMIRREP 164 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + + G N + + + Sbjct: 165 -----------------------------------HKYAKYKDGLKGGPNNPLGARALYL 189 Query: 316 YSRNN--TY--MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 + + TY +H T P + ++GC R+ N + DL Sbjct: 190 HDDDGRDTYLRIHGTNAPETIGS---AVSNGCARLTNEHVKDLYD 231 >gi|329999558|ref|ZP_08303455.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] gi|328538288|gb|EGF64429.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] Length = 321 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ TP + + ++ NP W Sbjct: 98 DAPREGLVINLAELRLYYYPPGKNEVTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + G N Sbjct: 158 TANIRAR-----------------------------------YKAMGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|295394855|ref|ZP_06805068.1| N-acetylmuramoyl-L-alanine amidase [Brevibacterium mcbrellneri ATCC 49030] gi|294972188|gb|EFG48050.1| N-acetylmuramoyl-L-alanine amidase [Brevibacterium mcbrellneri ATCC 49030] Length = 378 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + +H G+S V ++ +L G S FD ES ++ FQ G+ G+ Sbjct: 1 MTVSSIHPGDSDPLVATVKAQLHRLGY--QCDPSSDLFDHQFESVIREFQQSRGIVVDGV 58 Query: 157 VDSSTLEAMNV 167 + + T + + + Sbjct: 59 IGAETFKELEI 69 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 47/155 (30%), Gaps = 28/155 (18%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDI 88 IH D ++ + + + + + + I Sbjct: 4 SSIHPGDSDPLVATVKAQLHRLGYQCDPSS----------DLFDHQFESVIREFQQSRGI 53 Query: 89 LSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLSV 132 + G + EL I LG+ V L+ RL G S Sbjct: 54 VVDGVIGAETFKELEIARYKLGDRVLRFDPVRPLQGDDVTELQHRLSRLGVYTESITFE- 112 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 F + +AV+ Q GL P G+V STL A++ Sbjct: 113 -FGSATHNAVREIQNELGLSPDGVVGPSTLAALSA 146 >gi|254412152|ref|ZP_05025927.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181118|gb|EDX76107.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 734 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 5/90 (5%) Query: 95 PELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P + RP L G+ + V L+ L ++G + ++ + + + AV Q GL Sbjct: 154 PAVSARPNFILQRGDRNSQVTSLQRNLQVAGYF--NGPITGYYGSTTQDAVIQLQQAKGL 211 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 GM T A+ Q + Sbjct: 212 TVDGMAGPKTRAALESTPVSSASQTAPSTE 241 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ + V L+ L G D ++ + E+AV +Q GL GMV Sbjct: 252 PGLVLKRGSRNSDVTALQRTLQAQGYYD--GPITGYYGNLTENAVIQYQKAKGLTVDGMV 309 Query: 158 DSSTLEAMNVPVD 170 ++T A+ +P Sbjct: 310 GANTKAALELPSA 322 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 6/109 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P+ L GNS V L++ L G + ++ + E+AV FQ +GL P G+V Sbjct: 61 PVLALRKGNSGAEVTNLQKTLQAEGYF--NGPITGYYGPLTEAAVIQFQQANGLSPDGIV 118 Query: 158 DSSTLEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 ++T + L L + + P L Sbjct: 119 GTNTTATLESDSAAATDASLDTPLE---FESPIPEPEKPAVSARPNFIL 164 >gi|160931660|ref|ZP_02079054.1| hypothetical protein CLOLEP_00491 [Clostridium leptum DSM 753] gi|156869305|gb|EDO62677.1| hypothetical protein CLOLEP_00491 [Clostridium leptum DSM 753] Length = 574 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 14/184 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G++ V L+ RLI+ + S FD E+AVK +Q + L+ +G+VD Sbjct: 353 AAVIKKGDAGEEVTELQNRLILLRYMIGDA--SGTFDDATEAAVKEYQTTNSLEATGIVD 410 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + + + LR L +G + + A L+ + G G Sbjct: 411 KAMKDVLYSDKALRSP-------EADNLKLGYVGDDVKALQMKLAKLDLYQGGASGT--- 460 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + Q N + + I ++ L P Y ++ ++ + Sbjct: 461 --FDKATEQAVKSFEEENGLRVTGVADLTVRIAIDAVINSLDLGPTYARNTDMTVQAAAI 518 Query: 279 KEVF 282 E+ Sbjct: 519 TEID 522 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 98 PIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P P L LG+S V +L++RL G + G + F Y +K FQ + G + +G Sbjct: 201 PAEPVYLQLGSSGAEVAKLQQRLAELGYF--NDGATEYFGEYTAECLKAFQAKAGYEATG 258 Query: 156 MVDSST 161 ++D T Sbjct: 259 ILDPDT 264 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + + ++++LI + + ++AV FQ GL+ +G+ D++T Sbjct: 284 GEFAEEIHTIQQKLIQLQYMTGETT--GFYGDQTKAAVAKFQTVVGLESTGVYDNTTRSK 341 Query: 165 MNVPVDL 171 + Sbjct: 342 LEASDAP 348 >gi|284028974|ref|YP_003378905.1| ErfK/YbiS/YcfS/YnhG family protein [Kribbella flavida DSM 17836] gi|283808267|gb|ADB30106.1| ErfK/YbiS/YcfS/YnhG family protein [Kribbella flavida DSM 17836] Length = 281 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 4/140 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G +S V+++ RLI LD L +F SAVK FQ G+ G VD +T + Sbjct: 76 GATSPDVRKVEARLIQLKLLDKR-WLDASFGTSTRSAVKKFQTSKGIPALGYVDQNTWDQ 134 Query: 165 MNVPVDLRIRQ---LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + + ++ + L + + ++ + L V +G V ++ V Sbjct: 135 LKAATREPTQTELFPPPPVVNGRPLDPRCATGVSLCIDKTSRKLRYVVDGAVKMQFDVRF 194 Query: 222 GRVDRQTPILHSRINRIMFN 241 G T + N Sbjct: 195 GAQKTATREGGFSVGWKSRN 214 >gi|159898674|ref|YP_001544921.1| peptidoglycan binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891713|gb|ABX04793.1| Peptidoglycan-binding domain 1 protein [Herpetosiphon aurantiacus ATCC 23779] Length = 319 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ W + G+S +V ++ L G S + F A SAVK FQ Sbjct: 29 VAARTWATVSN-----GDSGDNVYTVQAMLKQRGY---SLTVDGDFGAGTLSAVKSFQSS 80 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 GL G+V +T E + + V + VN Sbjct: 81 KGLSADGVVGPNTWEQLVITVRQGDNNIVVNA 112 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 12/170 (7%) Query: 7 INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSI-------VNDRFDNFLARV 59 ++K +F L + + + P V + V + Sbjct: 1 MHKRWAFWFSGLTMALVMLASFGPAAQGVAARTWATVSNGDSGDNVYTVQAMLKQRGYSL 60 Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLI 119 + D +S Q+ K ++ ++ W +L + G++++ V L+ +L Sbjct: 61 TVDGDFGAGTLSAVKSFQSSKGLSA-DGVVGPNTWEQLV-ITVRQGDNNIVVNALQRQLK 118 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 G S + F A SAVK FQ GL G+V + T A+ Sbjct: 119 KHG---HSLTVDGDFGAGTLSAVKSFQSSKGLGADGIVGADTWAALTGNP 165 >gi|152969665|ref|YP_001334774.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894148|ref|YP_002918882.1| putative enzyme [Klebsiella pneumoniae NTUH-K2044] gi|150954514|gb|ABR76544.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546464|dbj|BAH62815.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 319 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ TP + + ++ NP W Sbjct: 96 DAPREGLVINLAELRLYYYPPGKNEVTVYPIGIGQLGGTTITPTMVTTVSDKRANPTWTP 155 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + G N Sbjct: 156 TANIRAR-----------------------------------YKAMGIELPAVVPAGPDN 180 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 181 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 220 >gi|75906281|ref|YP_320577.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75700006|gb|ABA19682.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 160 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 87 DILSRGGWPELPIRP------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 I+ W L L G+ V+ L++RL +G + + F E+ Sbjct: 70 GIVGYKTWQALYEGRAIDLPILKYGSQGELVKALQQRLQNAGYY--TGLIDGDFSFVTEA 127 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 +K FQ+R+ L G+V T ++ Sbjct: 128 GIKSFQLRNNLKVDGIVGDRTWTVLSNTP 156 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L+ L S + D+ + LFQ R + G+V Sbjct: 18 TLKQGDTGEVVKELQRLLR--NYYCYSGPIDGVLDSETVGGIILFQHRVFIPEDGIVGYK 75 Query: 161 TLEAM 165 T +A+ Sbjct: 76 TWQAL 80 >gi|324114140|gb|EGC08113.1| ykud domain-containing protein [Escherichia fergusonii B253] Length = 308 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + + +G+ R+TP + + R P W + ++ Sbjct: 99 MVVNVAEMRLYYYPPDSQTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFIPAGPENPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+R+ +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRDND--IKYLFDNVPVGTRVQI 231 >gi|218549337|ref|YP_002383128.1| hypothetical protein EFER_2002 [Escherichia fergusonii ATCC 35469] gi|218356878|emb|CAQ89509.1| conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Escherichia fergusonii ATCC 35469] Length = 308 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + + +G+ R+TP + + R P W + ++ Sbjct: 99 MVVNVAEMRLYYYPPDSQTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 159 -----------------------------------YAKRGESLPAFIPAGPENPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+R+ +L + P +R I Sbjct: 184 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRDND--IKYLFDNVPVGTRVQI 231 >gi|292670157|ref|ZP_06603583.1| endopeptidase [Selenomonas noxia ATCC 43541] gi|292648109|gb|EFF66081.1| endopeptidase [Selenomonas noxia ATCC 43541] Length = 245 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V L++ L +G + F E AV FQ + + +G+V+++ Sbjct: 27 TLREGAHGHDVLILQQALQKAGYKIKNA--DGVFGKDTERAVAEFQRDNKIKITGVVNNA 84 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 T A+ R + + K L G Sbjct: 85 TWRALKNAPSTRPWGVDIAPPTKKNLPLAPNG 116 >gi|304313095|ref|YP_003812693.1| General secretion pathway protein-related protein, ATPase [gamma proteobacterium HdN1] gi|301798828|emb|CBL47061.1| General secretion pathway protein-related protein, ATPase [gamma proteobacterium HdN1] Length = 632 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 17/162 (10%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 + S ++ V ++ R + + S + + + Y+ Sbjct: 468 LTRSGSLGLLRHLGLPAVVTLYNGEGRRRFVVVRSMDSSAAGDARVLLQAGATQYEVSED 527 Query: 91 --RGGWP-------ELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSV----AF 134 W ++P PL G S V LR L DLD S+ + Sbjct: 528 AFNRAWRGQFTLFWQVPASYRAPLMPGVISPLVPWLRNGLSQL-DLDVSEVAGQASGSLY 586 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 D + VK FQ + G G+V TL + +D + +L Sbjct: 587 DPALVERVKAFQRKQGEPADGIVGEMTLILLTRELDAHLPKL 628 >gi|260891972|ref|YP_003238069.1| spore cortex-lytic enzyme [Ammonifex degensii KC4] gi|260864113|gb|ACX51219.1| spore cortex-lytic enzyme [Ammonifex degensii KC4] Length = 228 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V R+++RL G D + F AV+ FQ ++GL G+V +T A Sbjct: 36 GSTGWHVMRVQQRLAQWGYYD--GPIDGVFGYKTWKAVRYFQWKNGLAVDGVVGPATWAA 93 Query: 165 MNVP 168 + P Sbjct: 94 LGFP 97 >gi|110635846|ref|YP_676054.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110286830|gb|ABG64889.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 195 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 45/193 (23%) Query: 161 TLEAMNVPVDLRIRQLQV--NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T + P R ++++ R + ++VN L VE R Sbjct: 24 TRQLAPQPAPGRANRIEIDPQFRRQRVPYAGGEKPGTIIVNRDERFLYYVEGDGWATRYG 83 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V VG+ R T + + R P W ++++++ P+YL+ Sbjct: 84 VGVGKEGR-TLSGRAVVGRKAEWPSWTPTANMMRRE--------PRYLQ----------- 123 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNV 335 + G N + + + R+ Y +H T EP Sbjct: 124 -----------------YAGGVSGGPHNPLGARALYLYRNGRDTMYRLHGTNEPWSIGQ- 165 Query: 336 VRFETSGCVRVRN 348 +SGC+R+ N Sbjct: 166 --AVSSGCIRLLN 176 >gi|239828434|ref|YP_002951058.1| NLP/P60 protein [Geobacillus sp. WCH70] gi|239808727|gb|ACS25792.1| NLP/P60 protein [Geobacillus sp. WCH70] Length = 454 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L L +G+ V +L+++L G ++ + + AV+ FQ ++ L + Sbjct: 176 KTLQANALKIGSRGTEVSKLQQKLKQLGYFT-YPEITDYYGTFTAEAVRKFQEKNKLPVT 234 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G+ DS+TL +N + Q Sbjct: 235 GVADSATLAKINEAIASSEPQ 255 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 30/167 (17%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF------DNFLARVDMGIDSDI- 67 FV + M + I E + F + + Sbjct: 16 FVSALFLMPDDGKAAEWKVGMSSPQIKELQQLLKEKGFFTYPTATGYFGTITEQAVKAFQ 75 Query: 68 -----PIIS---KETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLI 119 P+ T A+ + A A + +G+ +V+ L++ L Sbjct: 76 ASVRLPVTGIVDDATYAKLKGAAA--------------STAEMKIGSRGNNVKVLQQNLK 121 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + G ++ + + AVK FQ +GL +G+ D+ T++ + Sbjct: 122 LLGYF-RYPEITGYYGVITQEAVKKFQRNNGLSATGVADARTVQLIQ 167 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 11/162 (6%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID-----SDIPIISK 72 + L + + S L + + + + + D + + + +P+ Sbjct: 177 TLQANALKIGSRGTEVSKLQQKLKQLGYFTYPEITDYYGTFTAEAVRKFQEKNKLPVTGV 236 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 A I + I S P P L G++ V+ ++ +L G S + Sbjct: 237 ADSATL-AKIN--EAIASSEPQPSAPKAGIYLTTGSTGSEVKEVQTKLKQLGYFTYS-QI 292 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 + + +AVK FQ L +G+VD+ T E + R Sbjct: 293 TGYYGTITANAVKSFQRDVNLKATGVVDTETYERLMGKAPQR 334 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G SS ++ L++ L G + F E AVK FQ L +G+VD +T Sbjct: 33 KVGMSSPQIKELQQLLKEKGFFT-YPTATGYFGTITEQAVKAFQASVRLPVTGIVDDATY 91 Query: 163 EAMNVPVDLRIR 174 + Sbjct: 92 AKLKGAAASTAE 103 >gi|251797492|ref|YP_003012223.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. JDR-2] gi|247545118|gb|ACT02137.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. JDR-2] Length = 112 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 4/51 (7%) Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + + +H T +P R + GC+R+ N L Sbjct: 51 NPGGPFGVLWMGLSKPH-YGIHGTNDPSSIG---RMVSHGCIRMYNEDVLA 97 >gi|226313688|ref|YP_002773582.1| spore cortex-lytic enzyme precursor [Brevibacillus brevis NBRC 100599] gi|226096636|dbj|BAH45078.1| putative spore cortex-lytic enzyme precursor [Brevibacillus brevis NBRC 100599] Length = 215 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + G+ + V L+ RL + G D L + A AV+ FQ +GL G Sbjct: 26 SLAATQIQRGSVNGDVWDLQYRLQMLGYYD--DKLDGIYGANTTKAVRQFQKAYGLRIDG 83 Query: 156 MVDSSTLEAM-NVPVDLRIRQLQVNL 180 + +T + V V+ Q+ L Sbjct: 84 ITGPNTWRVLKKVSVNKAEMQMLAQL 109 >gi|319782245|ref|YP_004141721.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168133|gb|ADV11671.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 245 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 42/188 (22%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR--YVLVNIPAASLEAVENGKVGLRSTVI 220 A+ P + + Q+N + + + ++ G + ++++ L VE R V Sbjct: 79 AAVQPPAKRMVARPQINPIYLPQEVDYDGGQKPGTIVIDTTQNFLFLVEKNGKARRYGVG 138 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 G+ + +I P W P +I+++ A R P YL Sbjct: 139 TGKPGFE-WSGTHKITNKREWPDWRPPAQMIKRE-AAKGRYLPTYLA------------- 183 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 G N + + + + +H T +P + Sbjct: 184 ---------------------GGMENPLGARALYLGTTE-YRIHGTNQPWTIG---GAVS 218 Query: 341 SGCVRVRN 348 SGC+R+RN Sbjct: 219 SGCIRMRN 226 >gi|302390285|ref|YP_003826106.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] gi|302200913|gb|ADL08483.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] Length = 486 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V+ L+ L G + F +AVK FQ ++GL G+V T Sbjct: 86 LALGSYGQDVKLLQTMLNQRGY---KLKVDGIFGPKTLAAVKDFQKKNGLKVDGIVGPKT 142 Query: 162 LEAM 165 L + Sbjct: 143 LAKL 146 >gi|258514282|ref|YP_003190504.1| glycoside hydrolase family 18 [Desulfotomaculum acetoxidans DSM 771] gi|257777987|gb|ACV61881.1| glycoside hydrolase family 18 [Desulfotomaculum acetoxidans DSM 771] Length = 426 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 18/209 (8%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L LG+ V L+ +L ++G +S F AV F+ + L G Sbjct: 31 SVTPGNLRLGDRGPDVTLLQTKLKVAGFYQGE-KVSGYFGLNTLFAVSKFEKANRLRVDG 89 Query: 156 MVDSSTLEAMNVP---VDLRIRQLQVNLM------RIKKLLEQKMGLRYVLVNIPAASLE 206 +VD+ A+ +++++ + Y+ + S + Sbjct: 90 IVDAEEWIALQKLTAIPADKLKKMVLGYYTVDYTGDKLSYNSLDKYSSYID-TVATFSFK 148 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 +G + ++ + + ++ P + ++ L Sbjct: 149 VNRDGSLTGEVPQDALKLAK-----ERSVETLLLVHNIGQPIDSDAAHYALSVAENRSRL 203 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + N + + G +D + P + Sbjct: 204 EANIMSKVKANGY--NGVNIDIEALPPGD 230 >gi|119484927|ref|ZP_01619409.1| hypothetical protein L8106_15680 [Lyngbya sp. PCC 8106] gi|119457745|gb|EAW38869.1| hypothetical protein L8106_15680 [Lyngbya sp. PCC 8106] Length = 159 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V RL+ RL D + + ++ F + E AVK FQ R GL G+V T Sbjct: 94 LSFGSVGNDVIRLQNRL---NDFEINLLVNGIFASKTEGAVKQFQRRFGLTADGIVGPFT 150 Query: 162 LEAM 165 A+ Sbjct: 151 WNAL 154 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ +++ L+ERL I G + F E+ VK FQ + L G+V S T Sbjct: 18 RRGSQGKTIKNLQERLSILGY---KLLIDEVFGMATEAMVKQFQRENRLLVDGIVGSETW 74 Query: 163 EAMNVPVDLRIRQLQ 177 + + LQ Sbjct: 75 NTLLKATSVPFEALQ 89 >gi|32491101|ref|NP_871355.1| hypothetical protein WGLp352 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166308|dbj|BAC24498.1| ybiS [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 309 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +L+NI L +N + + V +G + ++TP + + R + P W P + K Sbjct: 102 ILINIAEMRLFYFPKNFEKVVVLPVGIGEIGKETPSKWKTYVKRKKYAPTWT-PTKDMHK 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + S + GK N M + Sbjct: 161 E----------------------------------YSSLGIKLLKIYPSGKNNPMGLYAL 186 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-----YHI 368 H T F +R T GC+R+RN D+ +L + P + + Sbjct: 187 YLEDLYAI--HGTNTN--FGIGLR-VTHGCIRLRN-DDI-KYLFNNVPVGTEVYFINEPV 239 Query: 369 EEVVKTRKTTPVKLATEV 386 + ++ +++ + Sbjct: 240 KVTHESDGNKYIEVHQPL 257 >gi|169631880|ref|YP_001705529.1| bacteriophage protein [Mycobacterium abscessus ATCC 19977] gi|169243847|emb|CAM64875.1| Bacteriophage protein [Mycobacterium abscessus] Length = 282 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 18/104 (17%) Query: 86 QDILSRGGWPELPIRPLHL--------------GNSSVSVQRLRERLIISGDLDPSKGLS 131 +DI + G +P G+ V +L+ RL G + Sbjct: 182 RDIQDQIGRVAIPAPTPRPSVPVGEYADVLLFRGSKGPQVSQLQRRLNEHG---ADLVVD 238 Query: 132 VAFDAYVESAVKLFQMR-HGLDPSGMVDSSTLEAMNVPVDLRIR 174 F E++V+ FQ R GL G+V +T A+ + + + Sbjct: 239 GIFGPNTEASVREFQRRARGLKVDGIVGPATAAALRLKAEPALE 282 >gi|227820976|ref|YP_002824946.1| putative exported ErfK/YbiS/YhnG family protein [Sinorhizobium fredii NGR234] gi|227339975|gb|ACP24193.1| putative exported ErfK/YbiS/YhnG family protein [Sinorhizobium fredii NGR234] Length = 249 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 58/206 (28%), Gaps = 47/206 (22%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR-----YVLVNIPAASLEAVENGKVGLRS 217 A+ R ++ + + L + ++++ L V R Sbjct: 80 AAVQPAAAHRAQKPLKSQFDPQFLPQMVAYDTGEKPGTIVIDTNNRFLYLVTGDGQARRY 139 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V VG+ + +I R P W P +I ++ + Sbjct: 140 GVGVGKPGFE-WAGAHKITRKSEWPSWTPPGEMIARE-----------AAKGHY------ 181 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 R D G N + + + +H T P Sbjct: 182 ------------------LPDRMDGGPANPLGARAMYLG-STLYRIHGTNAPWTIGYG-- 220 Query: 338 FETSGCVRVRN--IIDLDVWLLKDTP 361 +SGC+R+RN ++DL + T Sbjct: 221 -VSSGCIRMRNEDVVDLYERVKIGTK 245 >gi|323527783|ref|YP_004229936.1| peptidoglycan-binding domain 1 protein [Burkholderia sp. CCGE1001] gi|323384785|gb|ADX56876.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. CCGE1001] Length = 268 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 17/151 (11%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ V L+ RL +G ++ +D E+AV+ Q + GL G+ TL Sbjct: 5 RLGDYGDDVGLLQRRLARAGF---QLDVTHVYDDATEAAVEEIQTKVGLVVDGIAGPKTL 61 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A+ L + + + +P A + A+ + Sbjct: 62 AAIATGRRDPKH-----------LSDADIAKAADTLGVPIACVRAIN---EVESTGSGFL 107 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R + + + + P I + Sbjct: 108 GDGRPKILFERHVFWKRLQAHGIDPAPIAAR 138 >gi|194016792|ref|ZP_03055405.1| protein ErfK/srfK [Bacillus pumilus ATCC 7061] gi|194011398|gb|EDW20967.1| protein ErfK/srfK [Bacillus pumilus ATCC 7061] Length = 169 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 47/182 (25%), Gaps = 59/182 (32%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G YV++N L ++ G++ G+ TP I Sbjct: 22 NPLPGDPYVIINKQTNELAYIDQGQIQKIYPASTGKTSDLTPEGEFTIMIK--------- 72 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 +DP Y + NI K N Sbjct: 73 ------------AKDPYY-RKKNIE----------------------------GGAKNNP 91 Query: 308 MASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + I F +H T + F T+GCVR+ N + L L T Sbjct: 92 LGRRWIGFDARGTDGRTYGIHGTSDETSIGK---FITAGCVRLHNQDVELLFDQLPVGTK 148 Query: 362 TW 363 W Sbjct: 149 VW 150 >gi|114705544|ref|ZP_01438447.1| hypothetical protein FP2506_13799 [Fulvimarina pelagi HTCC2506] gi|114538390|gb|EAU41511.1| hypothetical protein FP2506_13799 [Fulvimarina pelagi HTCC2506] Length = 287 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 54/190 (28%), Gaps = 41/190 (21%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 ++T A V R + + + ++++ L VE + +R Sbjct: 120 AATWPAPVREVAPR-HITSPEFLPQRVPYRSRHATGTIVIDTSQRFLYHVEPNGMAMRYG 178 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V VG+ + I P W P+ +I ++ Sbjct: 179 VGVGKPG-FSWRGMHNITAKKKWPSWTPPKEMIARE------------------------ 213 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + + G N + + + +H T +P Sbjct: 214 -----------KKKGRHLPSFMPGGVENPLGARALYLG-STLYRIHGTNQPWTIGQ---A 258 Query: 339 ETSGCVRVRN 348 +SGC+R+RN Sbjct: 259 VSSGCIRMRN 268 >gi|170754496|ref|YP_001781027.1| zinc carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] gi|169119708|gb|ACA43544.1| zinc carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] Length = 423 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E VK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--NVGPIDGIFGSNTEETVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMNV 167 E +N Sbjct: 62 YEVLNK 67 >gi|192293062|ref|YP_001993667.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] gi|192286811|gb|ACF03192.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 255 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 50/182 (27%), Gaps = 46/182 (25%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 QL L R K ++++ L V G +R V VGR T Sbjct: 77 AQLPDRLRRTVISYPTKEPAGTIVIDTANTYLYYVLGGGRAIRYGVGVGREG-FTWAGVQ 135 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 I R P W P +I + Sbjct: 136 TITRKAEWPDWRPPAEMIARQ--------------------------------------- 156 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IID 351 P G N + + + +H T +P F +SGC+R+ N + D Sbjct: 157 PYLPRFMAGGPGNPLGARAMYLG-STTYRIHGTNDPSTIGK---FVSSGCIRLTNEDVED 212 Query: 352 LD 353 L Sbjct: 213 LF 214 >gi|315648072|ref|ZP_07901173.1| spore cortex-lytic enzyme [Paenibacillus vortex V453] gi|315276718|gb|EFU40061.1| spore cortex-lytic enzyme [Paenibacillus vortex V453] Length = 271 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G++ V L+ RL G + F + + AVK FQ G+ Sbjct: 39 PTFSQQTIKFGSTGEDVYELQGRLKYLGFYH--GKIDSVFGSKTQGAVKWFQSEFGMKVD 96 Query: 155 GMVDSS 160 G+V Sbjct: 97 GVVGPK 102 >gi|282555177|gb|ADA82690.1| L,D-transpeptidase [Candidatus Blochmannia sansabeanus] Length = 315 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L N + + +G ++ TP + + NP W IP ++ Sbjct: 102 IVINSAEMRLYYYPANSNTVITLPIAIGTIENATPYYWITSVKHKKKNPIW-IPTKNMRD 160 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M + Sbjct: 161 EYIKR----------------------------------GEVLPTIFPAGSNNPMGLYAL 186 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-----YHI 368 H T F +R T GC+R+R D+ +L K P ++ I Sbjct: 187 YLGQNYAI--HGTNSN--FGIGLR-VTRGCIRLR-PKDI-EFLFKIVPVGTKVQFINEPI 239 Query: 369 EEVVKTRKTTPVKLATEV 386 + ++T +++ + Sbjct: 240 KSTIETNGMQYLEVHNPL 257 >gi|167040080|ref|YP_001663065.1| SpoIID/LytB domain-containing protein [Thermoanaerobacter sp. X514] gi|300914163|ref|ZP_07131479.1| SpoIID/LytB domain protein [Thermoanaerobacter sp. X561] gi|307724601|ref|YP_003904352.1| SpoIID/LytB domain-containing protein [Thermoanaerobacter sp. X513] gi|166854320|gb|ABY92729.1| SpoIID/LytB domain [Thermoanaerobacter sp. X514] gi|300889098|gb|EFK84244.1| SpoIID/LytB domain protein [Thermoanaerobacter sp. X561] gi|307581662|gb|ADN55061.1| SpoIID/LytB domain protein [Thermoanaerobacter sp. X513] Length = 762 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 12/130 (9%) Query: 47 IVNDRFDNFLARVDMGIDSDIPIISKETIAQT-EKAIA-FYQDILSRGG--------WPE 96 D F M + D ++ EKA+ I Sbjct: 55 NPTDYFGPATKNAVMRLQKDYNLVPDGIYGPLTEKALMDKLNAISKATTQTSNTSLQTQS 114 Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G V+ L+ L G + + F + AV FQ + L P G+ Sbjct: 115 TVTRTLKYGMQGNDVKELQNALAKLGYF--NTTPTGYFGSITRDAVIKFQKANNLTPDGI 172 Query: 157 VDSSTLEAMN 166 V T +A++ Sbjct: 173 VGPLTQKAIS 182 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 2/98 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ L+ L G + + F + AV FQ + L P G+V Sbjct: 216 TRTLKYGMQGNDVKELQNALAKLGYF--NTTPTGYFGSITRDAVIKFQKANNLTPDGIVG 273 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 T + + + + +Q K Sbjct: 274 PLTQKTIQGLLAGKDQQASQPTDSPKIQYPSGFSRNMK 311 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R + G++ V+ L+ L G ++ +D +AV FQ + L G+ Sbjct: 307 SRNMKKGDTGDDVKLLQTLLKEIGYYTKD--ITGTYDDNTLNAVMDFQKYYSLAVDGIAG 364 Query: 159 SSTLEAM 165 +T+ + Sbjct: 365 INTITKV 371 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 16/160 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++ L +G + F ++AV Q + L P G+ T Sbjct: 29 LKYGMRSPEVRHLQQNLNKAGYFVTANPTD-YFGPATKNAVMRLQKDYNLVPDGIYGPLT 87 Query: 162 LEAM--------NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN--- 210 +A+ LQ + L G + A L Sbjct: 88 EKALMDKLNAISKATTQTSNTSLQTQSTVTRTLKYGMQGNDVKELQNALAKLGYFNTTPT 147 Query: 211 ---GKVGLRSTVIVGRVDRQTPIL-HSRINRIMFNPYWVI 246 G + + + + + TP + + + + Sbjct: 148 GYFGSITRDAVIKFQKANNLTPDGIVGPLTQKAISEKLNV 187 >gi|226362884|ref|YP_002780664.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus opacus B4] gi|226241371|dbj|BAH51719.1| putative N-acetylmuramoyl-L-alanine amidase [Rhodococcus opacus B4] Length = 399 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 66/219 (30%), Gaps = 32/219 (14%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG--------------LSVAFDAYVESAVKLFQM 147 L G+ +V +R L G L FD +++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLAGLGFLHNGVPGTRRESINGSHWIAPDAVFDHHLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 + GL G+V +T +M R+ + L + + + Sbjct: 64 QRGLLVDGIVGPATYRSMKE-ASYRLGARTLIYQLSAPLYGDDVATLQTRLQDLGFYVGR 122 Query: 208 VE--------NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM--- 256 V+ N + + + P + + P ++ +++M+ Sbjct: 123 VDGFFGPQTHNSLSSFQREIGIAADGICGPATLRSLELLGTRVTGGSPHAMSEEEMVRSS 182 Query: 257 ------ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + DP D ++ + ++ W+ Sbjct: 183 GPQLSGKRIVIDPGLGGDTYGTIVRSPYGTISESDILWD 221 >gi|163758390|ref|ZP_02165478.1| putative signal peptide protein [Hoeflea phototrophica DFL-43] gi|162284679|gb|EDQ34962.1| putative signal peptide protein [Hoeflea phototrophica DFL-43] Length = 207 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 42/188 (22%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A + ++ + R K + ++V+ L VE R V VGR Sbjct: 15 AEPASAQTQSKKPKSKYWRKKVRFQTNEKPGTIIVDTNTKYLYYVEGNNRATRYGVGVGR 74 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 ++ R P W P ++I ++ Sbjct: 75 EG-FGWSGTVKVGRKAEWPSWRPPATMIARE----------------------------- 104 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFET 340 + G N + + + R+ + +H T +P + + Sbjct: 105 ------RRKGRILPAYMKGGPNNPLGARALYLYRGGRDTIFRIHGTNQPWTIGQNM---S 155 Query: 341 SGCVRVRN 348 SGC+R+ N Sbjct: 156 SGCIRMMN 163 >gi|146342536|ref|YP_001207584.1| putative ErfK/YbiS/YcfS/YnhG [Bradyrhizobium sp. ORS278] gi|146195342|emb|CAL79367.1| conserved hypothetical protein; putative ErfK/YbiS/YcfS/YnhG precursor [Bradyrhizobium sp. ORS278] Length = 232 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 48/193 (24%) Query: 159 SSTLEAMNVPVDLRIRQLQV--NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 +T + P + ++ L R + ++++ P L V +R Sbjct: 53 PATAPQVVNPQEDEAAPYELPARLRRQVVSYSTREAPGTIVIDTPNKYLYYVLGNGQAMR 112 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 + VGR D T I + P W P +I + YL + Sbjct: 113 YGIGVGR-DGFTWSGVQSITKKAEWPDWTPPPEMIARQP---------YLPRH------- 155 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNV 335 G N + + + Y +H T P Sbjct: 156 -----------------------MAGGPGNPLGARAMYL--GGTVYRIHGTNAPETIGT- 189 Query: 336 VRFETSGCVRVRN 348 +SGC+R+ N Sbjct: 190 --HVSSGCIRLTN 200 >gi|307945854|ref|ZP_07661190.1| putative bacteriophage-acquired protein [Roseibium sp. TrichSKD4] gi|307771727|gb|EFO30952.1| putative bacteriophage-acquired protein [Roseibium sp. TrichSKD4] Length = 407 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ V+RL+ RL + + F + AV FQ HGL P G+V Sbjct: 219 AASLRLGSEGEKVERLQLRLTNLNYVLR---VDGDFGPATKRAVVAFQADHGLKPDGIVG 275 Query: 159 SSTLEAM 165 T +A+ Sbjct: 276 QQTQDAL 282 >gi|257876689|ref|ZP_05656342.1| carboxyl-terminal protease [Enterococcus casseliflavus EC20] gi|257810855|gb|EEV39675.1| carboxyl-terminal protease [Enterococcus casseliflavus EC20] Length = 476 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 94 WPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P LP L G SS +V L + L G F+ +AVK FQ H L Sbjct: 383 FPPLPRDNALKAGQSSTAVNNLNQFLEALGY----TTSGDTFNDETTAAVKAFQEDHDLK 438 Query: 153 PSGMVDSSTLEAMNVPVDLRIR 174 +G VD+ T +A+ V +++ Sbjct: 439 ATGEVDADTAQAIEKEVAEKLK 460 >gi|300866027|ref|ZP_07110760.1| hypothetical protein OSCI_2560002 [Oscillatoria sp. PCC 6506] gi|300335971|emb|CBN55918.1| hypothetical protein OSCI_2560002 [Oscillatoria sp. PCC 6506] Length = 333 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G++ V+ L++RL G ++ + + E AV+ FQ+ GL +G+ D+ T Sbjct: 58 IRPGSNGEQVRALQQRLQAQGYFPIGTTPTIYYRSITEEAVRQFQLARGLSATGIADNLT 117 Query: 162 LEAMNVPVDLRIRQ 175 L + + Q Sbjct: 118 LYYLGLGPYPTPTQ 131 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + +V+ L+ +L + F E AVK FQ R G+ G+ S Sbjct: 247 TLGRNSRGPAVRELQNQLARL--RITPGAIDGVFGNDTEYAVKRFQQRMGIYADGIATPS 304 Query: 161 TLEAMN 166 A+ Sbjct: 305 VQIALR 310 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V L+++L G + + SAV FQ + L P+G DS+TL A+++ Sbjct: 161 DKNVTFLQQKLKALGFF--YGAVDGKYRERTLSAVTRFQQANNLVPTGCADSTTLAAIDL 218 Query: 168 PVDL 171 + Sbjct: 219 GIRE 222 >gi|289665442|ref|ZP_06487023.1| hypothetical protein XcampvN_20822 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 625 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 11/164 (6%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L + S + + S LD + E H+ + + + + +++ A T Sbjct: 353 QLKISQSRGGEGVELSSLDSYL-ERKHAKGVKLYASDPLSEARDLLQERSQTKQQSHAAT 411 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFD 135 E + G L + V+ L++ L G D + Sbjct: 412 EHKPSQAYAAADASG-------VLRENVRAADVRTLQQTLQQLGYKDAHGHELKPDGVYG 464 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 VK FQ HGL G+V T A+ + + N Sbjct: 465 QRTSETVKAFQRAHGLQDDGVVGRDTQAALRQAEKTPLLSEKTN 508 >gi|17230770|ref|NP_487318.1| hypothetical protein all3278 [Nostoc sp. PCC 7120] gi|17132373|dbj|BAB74977.1| all3278 [Nostoc sp. PCC 7120] Length = 272 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 62/214 (28%), Gaps = 55/214 (25%) Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + ++ + + ++ ++R L K + + V+V++ Sbjct: 105 KKTQLLTPESRKNADLSDQSQLR-LSQPAAHKKTSNKLGNTKKEVVVDLSDRRTYVYAGD 163 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 V + +G+ +TP ++ + +P W Sbjct: 164 IVIASYPIAIGKRGWETPTGTFNVSHMEHDPIWR-------------------------- 197 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS--RNNTYMHDTPEP 329 + F G + + I F+S RN H TP+ Sbjct: 198 -----------------HPITGKIFP----AGVDSPLGERWIGFWSDGRNKIGFHGTPDT 236 Query: 330 ILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 L + GC+R+RN + L + TP Sbjct: 237 HLLGT---AISHGCLRMRNSDVRLLYDQVELGTP 267 >gi|239832519|ref|ZP_04680848.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824786|gb|EEQ96354.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 299 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G SV ++ L +G S + F A E AV+ FQ H L G+V T Sbjct: 229 LRRGMRGPSVANVQRALRAAGFYHMS--IDGVFGAGTEQAVRSFQREHRLVSDGLVGRKT 286 Query: 162 LEAMNV 167 A+ Sbjct: 287 FAALER 292 >gi|186682010|ref|YP_001865206.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464462|gb|ACC80263.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 449 Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 3/89 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G + +V RL++RL G L+ + F AV FQ + + + Sbjct: 107 PSGQYPVLSQGKTGAAVTRLQQRLRQLGYLNANAT--GTFGPMTRDAVIKFQRNYRIAAN 164 Query: 155 GMVDSSTLEA-MNVPVDLRIRQLQVNLMR 182 G+V+ T A + L +R Sbjct: 165 GIVNRQTWNALLGSSPTQTRSSLSTQQVR 193 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 76/239 (31%), Gaps = 24/239 (10%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 L +S+ + + E + F+ + D I + I Sbjct: 176 LGSSPTQTRSSLSTQQVRELQGRLQQLGYFNTSPTGKIGPMTRDAVIKFQRNYRLPVNGI 235 Query: 83 AFYQDI-----LSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 A Q + +S GG + L LG+ +V ++ERL G + F Sbjct: 236 ANAQVLDAVRRVSTGGSITQQPSRDYLTLGDRGDNVALVQERLSQLGF--SNTNPDGFFS 293 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN---------LMRIKKL 186 + V FQ L+ +G VD T +A+ + + N L+ + Sbjct: 294 DSTKETVIAFQQYSRLNVTGNVDWQTWQALGLDSSTGGNYTEANGSVLPETRYLVPVNTG 353 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLR--STVIVGRVDRQTPILHSRINRIMFNPY 243 RYVL A ++ + VIV + T S++ + + N Sbjct: 354 YATPENNRYVLPPATAYAVPGTNGNTLVASNPYRVIVPISNNDTL---SKVQQYIPNAV 409 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 12/141 (8%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 + + + + N A P+ I I++ Sbjct: 114 LSQGKTGAAVTRLQQRLRQLGYLNANATGT-----FGPMTRDAVIKFQRNYRIAANGIVN 168 Query: 91 RGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 R W L P + S+ V+ L+ RL G + S AV FQ Sbjct: 169 RQTWNALLGSSPTQT-RSSLSTQQVRELQGRLQQLGYFNTSPT--GKIGPMTRDAVIKFQ 225 Query: 147 MRHGLDPSGMVDSSTLEAMNV 167 + L +G+ ++ L+A+ Sbjct: 226 RNYRLPVNGIANAQVLDAVRR 246 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 5/75 (6%) Query: 96 ELPIRPL---HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + + L +G++ V + L G + +S F + ++AV FQ + + Sbjct: 14 SIAGQSLALQKIGSNGSEVTSSQRCLKKLGYF--NGPVSGKFASLTQNAVIKFQQANRIP 71 Query: 153 PSGMVDSSTLEAMNV 167 G+V +T +A+ Sbjct: 72 ADGVVGINTQQALQR 86 >gi|91977890|ref|YP_570549.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91684346|gb|ABE40648.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 232 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 50/191 (26%), Gaps = 46/191 (24%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 D +L L R ++++ P L V G +R Sbjct: 54 PQVQALPQRDEDAAPAELPARLKRQTVSYATHEAPGTIIIDTPNTHLYYVLGGGRAIRYG 113 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + VGR D T I + P W P +I + YL + Sbjct: 114 IGVGR-DGFTWSGTQSITKKAEWPDWTPPPEMIARQP---------YLPRH--------- 154 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVR 337 G N + + + Y +H T P Sbjct: 155 ---------------------MAGGPGNPLGARAMYL--GGTIYRIHGTNAPSTIGT--- 188 Query: 338 FETSGCVRVRN 348 +SGC+R+ N Sbjct: 189 HVSSGCIRLTN 199 >gi|282555162|gb|ADA82679.1| L,D-transpeptidase [Candidatus Blochmannia vicinus] Length = 311 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 49/208 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L +N + + +G + TP + I NP Sbjct: 91 LILPNTPHLGIIINSAEMRLFYYPKNSNTVVILPIAIGTIKNATPYYWITSIKHKKKNPV 150 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P ++ + + +G E+ G Sbjct: 151 W-VPTKNMRDEYI--------------------RGGEILPTMF--------------PAG 175 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + H T F +R T GC+R+R D+ +L K P Sbjct: 176 SNNPMGLYALYLGRNYAI--HGTNS--NFGIGLR-VTRGCIRLR-PQDI-EFLFKAVPVG 228 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V++ +++ + Sbjct: 229 TRVQFINEPIKSTVESNGMQYLEIHNPL 256 >gi|27381747|ref|NP_773276.1| ATP synthase subunit [Bradyrhizobium japonicum USDA 110] gi|27354916|dbj|BAC51901.1| ATP synthase subunit [Bradyrhizobium japonicum USDA 110] Length = 262 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 46/186 (24%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 D ++ R + ++++ P L V +R + VGR Sbjct: 89 QSAPSEDQDAVEMPARFRRQTVSYATREAPGTIIIDTPNTYLYYVLGNGQAVRYGIGVGR 148 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 D T + + P W P +I + YL + Sbjct: 149 -DGFTWSGVQSVTKKAEWPDWTPPPEMIARQP---------YLPRH-------------- 184 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSG 342 G N + + + Y +H T P +SG Sbjct: 185 ----------------MAGGPGNPLGARAMYL--GGTIYRIHGTNAPDTIGK---HVSSG 223 Query: 343 CVRVRN 348 C+R+ N Sbjct: 224 CIRLTN 229 >gi|302390029|ref|YP_003825850.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] gi|302200657|gb|ADL08227.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] Length = 78 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V L+ +L G + F E AV+ Q + + G+V Sbjct: 9 SRTLRRGMRGKDVAELQTKLQALGYYM--GPIDGIFGRLTEMAVRRLQRDNNIRVDGIVG 66 Query: 159 SSTLE 163 T Sbjct: 67 PQTYA 71 >gi|22034314|gb|AAL01556.1| ErfK [Escherichia fergusonii] Length = 299 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 46/172 (26%), Gaps = 44/172 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN L G + +G+ R+TP + + R P W + + Sbjct: 98 IIVNAAEMRLYYYPPGSNTVEVLPIGIGQAGRETPRNWVTAVERKQEGPTWSPTPNTRRA 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + E G N M I Sbjct: 158 -----------------------------------YAAEGKTLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 H T F +R + GC+R+RN +L + P +R Sbjct: 183 YIGRLYAI--HGTNSN--FGIGLR-VSQGCIRLRNND--IKYLFDNVPVGTR 227 >gi|321315163|ref|YP_004207450.1| murein transglycosylase [Bacillus subtilis BSn5] gi|291483940|dbj|BAI85015.1| hypothetical protein BSNT_02352 [Bacillus subtilis subsp. natto BEST195] gi|320021437|gb|ADV96423.1| murein transglycosylase [Bacillus subtilis BSn5] Length = 167 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 12/154 (7%) Query: 211 GKVGLRSTVIVGRVDRQTPILHSRIN--RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + P L + + + + P P +I +++ + + Sbjct: 16 NSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLFLN 75 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N + K + V ++ +P +I + + + ++ +H T Sbjct: 76 NRVM----KTYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSKQH-YGIHGTNN 130 Query: 329 PILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 P + GC+R+ N +I+L + T Sbjct: 131 PASIGK---AVSKGCIRMHNKDVIELASIVPNGT 161 >gi|253682264|ref|ZP_04863061.1| autolytic lysozyme (1,4-beta-N-acetylmuramidase)(Autolysin) [Clostridium botulinum D str. 1873] gi|253561976|gb|EES91428.1| autolytic lysozyme (1,4-beta-N-acetylmuramidase)(Autolysin) [Clostridium botulinum D str. 1873] Length = 322 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++RL+ G GL F E AVK FQ GL G+V T Sbjct: 257 RRGAKGNITKIIQQRLLNKGYSLGVYGLDGVFGTKTEMAVKRFQKDCGLKIDGIVGRETW 316 Query: 163 EAM 165 +A+ Sbjct: 317 KAL 319 >gi|309702285|emb|CBJ01603.1| putative exported protein [Escherichia coli ETEC H10407] Length = 310 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 47/168 (27%), Gaps = 44/168 (26%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + +G+ R+TP + + R P W + ++ Sbjct: 98 IVVNVAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 158 -----------------------------------YAKRGESLPAFVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 H T F +R + GC+R+RN D +L + P Sbjct: 183 YIGRLYAI--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDNVP 223 >gi|91975851|ref|YP_568510.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91682307|gb|ABE38609.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 250 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 50/182 (27%), Gaps = 45/182 (24%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 QL L R + ++++ L V G +R V VGR T Sbjct: 74 AQLADRLRRQVVAYDGNQPAGTIVIDTANTYLYYVLGGGRAIRYGVGVGREG-FTWAGTQ 132 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 I R P W P +I + Sbjct: 133 TITRKAEWPDWHPPAQMIARQ--------------------------------------- 153 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 P G N + + + S +H T +P + +SGC+R+ N D+ Sbjct: 154 PYLPRFMAGGPGNPLGARAMYLGSTQ-YRIHGTNDPSTIGK---YVSSGCIRLTN-EDVA 208 Query: 354 VW 355 Sbjct: 209 DL 210 >gi|267994063|gb|ACY88948.1| hypothetical protein STM14_2503 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|332988950|gb|AEF07933.1| hypothetical protein STMUK_2045 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 309 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNVN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|255019748|ref|ZP_05291825.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] gi|254970816|gb|EET28301.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] Length = 358 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 41/169 (24%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++V+IPA L + V V V + + + I + P W +P++I Sbjct: 98 IVVDIPARRLYYFPADRHVVFTYPVGVFLPGWKESLTTTSIIQKFKMPAWNVPKNIHA-- 155 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ F ++ W PG N M +E Sbjct: 156 ----------------------WFEKKFHMDIPWYW----------PPGAENPMGELAME 183 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++H T P +R + GC ++ NI L + TP Sbjct: 184 TGLS-GIFIHGTYHPW--GVGMRA-SQGCFQMYPENIAQLFPMVPVGTP 228 >gi|146338180|ref|YP_001203228.1| putative ErfK/YbiS/YcfS/YnhG [Bradyrhizobium sp. ORS278] gi|146190986|emb|CAL74991.1| conserved hypothetical protein, putative ErfK/YbiS/YcfS/YnhG precursor [Bradyrhizobium sp. ORS278] Length = 211 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + R G N + + I +++ Y +H T +P +SGC+R+ Sbjct: 116 QARLGPYPKRVAGGPANPLGARAIYLYEGNKDTLYRIHGTNQPEYIGQ---AISSGCIRM 172 Query: 347 RNII 350 NI Sbjct: 173 TNID 176 >gi|159184414|ref|NP_353692.2| hypothetical protein Atu0669 [Agrobacterium tumefaciens str. C58] gi|159139727|gb|AAK86477.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 258 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 47/211 (22%) Query: 145 FQMRH----GLDPSGMVDSS---TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 FQ R SG+ A P Q+ + + ++ Sbjct: 69 FQQRQVAMPQRPSSGVTSQRPARVQNAAVRPNAPMRTQIAPQFLPQIVSYQTAEKPGTIV 128 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 ++ P L V R V VG+ + ++ R P W P+ +I ++ Sbjct: 129 IDTPNRFLYLVLADGKARRYGVGVGKPGFE-WAGTHKVTRKAEWPSWTPPKEMISRE--- 184 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + + + G N M + + Sbjct: 185 --------------------------------ATKGHYLPAFMEGGPANPMGARAMYLG- 211 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 212 STLYRIHGTNQPWTIGSNN---SSGCIRMRN 239 >gi|51892856|ref|YP_075547.1| polysaccharide deacetylase [Symbiobacterium thermophilum IAM 14863] gi|51856545|dbj|BAD40703.1| polysaccharide deacetylase [Symbiobacterium thermophilum IAM 14863] Length = 328 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +R L G++ +V L+ L +G + F E+AV Q +GL G Sbjct: 33 AVSVRALRFGDAGPAVAELQRLLAANGF--DPGPVDGIFGPLTEAAVLAAQRHYGLTVDG 90 Query: 156 MVDSSTLEAMNVPVDLRIR 174 + T+ A+ + Sbjct: 91 LAGRMTVGALQSRPQAPVT 109 >gi|13475763|ref|NP_107330.1| hypothetical protein mll6923 [Mesorhizobium loti MAFF303099] gi|14026519|dbj|BAB53116.1| mll6923 [Mesorhizobium loti MAFF303099] Length = 243 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 42/188 (22%) Query: 163 EAMNVPVDLRIRQLQVNLMRIK--KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 A+ P + + Q+N + + + ++++ L VE R V Sbjct: 77 AAVQAPAKRMVMRPQINPIYLPQEVAYDGPQKPGTIVIDTTQNFLYLVEKNGKARRYGVG 136 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 G+ + +I P W P +I+++ A R P YL Sbjct: 137 TGKPGFE-WSGTHKITNKREWPDWRPPAQMIKRE-AAKGRYLPTYLA------------- 181 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 G N + + + + +H T +P + Sbjct: 182 ---------------------GGIENPLGARALYLGTTE-YRIHGTNQPWTIG---GAVS 216 Query: 341 SGCVRVRN 348 SGC+R+RN Sbjct: 217 SGCIRMRN 224 >gi|312143852|ref|YP_003995298.1| Peptidase M23 [Halanaerobium sp. 'sapolanicus'] gi|311904503|gb|ADQ14944.1| Peptidase M23 [Halanaerobium sp. 'sapolanicus'] Length = 410 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 3/75 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L L N V +++ L G F E AVK FQ +GL G+V Sbjct: 26 AYNLRLNNRGSEVVEVQKYLTELGY---DISSDGIFGRATEEAVKDFQSSNGLSVDGIVG 82 Query: 159 SSTLEAMNVPVDLRI 173 T + + ++ Sbjct: 83 RETYQKLKNSFVEKV 97 >gi|257440593|ref|ZP_05616348.1| penicillin-resistant DD-carboxypeptidase [Faecalibacterium prausnitzii A2-165] gi|257196916|gb|EEU95200.1| penicillin-resistant DD-carboxypeptidase [Faecalibacterium prausnitzii A2-165] Length = 159 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 G P + G S +++ ++++L G G F + +AV+ FQ R Sbjct: 82 AKHGLAVPYPGIVMRTGMSGGTIRLIQQKLNTLG---EKIGTDGKFGSRTAAAVQRFQRR 138 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL+ G V +T E + Sbjct: 139 NGLNADGAVGKATWEKL 155 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ ++ L D P+ F E+AVK FQ+R+ ++ G V Sbjct: 10 IQKGSYGPDEALVQTWLNGVRDQCSYYPALTTDGRFGTKSENAVKEFQLRNNMNMDGKVG 69 Query: 159 SSTLEAM 165 ++T + Sbjct: 70 ANTWNVL 76 >gi|119490226|ref|ZP_01622739.1| prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase [Lyngbya sp. PCC 8106] gi|119454112|gb|EAW35265.1| prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase [Lyngbya sp. PCC 8106] Length = 367 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 92 GGWPELP-IRPLHLGNS---SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P R L L V +++ L G L + FD + A+K FQ Sbjct: 288 GIWCHFPVPRVLRLKQKFIEGSDVIQVQTALKKLGYL---VDQNGVFDKKTDDAIKQFQQ 344 Query: 148 RHGLDPSGMVDSSTLEAMNVPVD 170 L G+V +T + V Sbjct: 345 EKNLTVDGVVGPATWAKLLVSFA 367 >gi|291533118|emb|CBL06231.1| Cell wall-associated hydrolases (invasion-associated proteins) [Megamonas hypermegale ART12/1] Length = 204 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 LG+ + ++ L G F ++AV FQ +GLD G+V Sbjct: 6 SASSFRLGDQGAEIAEIQAALASQGY---DVTADGDFGPATQAAVAAFQSANGLDNDGLV 62 Query: 158 DSSTLE 163 + T + Sbjct: 63 GAMTYQ 68 >gi|254410280|ref|ZP_05024060.1| Bacterial SH3 domain family [Microcoleus chthonoplastes PCC 7420] gi|196183316|gb|EDX78300.1| Bacterial SH3 domain family [Microcoleus chthonoplastes PCC 7420] Length = 337 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GG L G++ +V L+ RL G + ++ + E+AV+ Q Sbjct: 122 ENGGSTVPSSAVLRPGSTGTAVTNLQNRLQEVGVY--NGPVTGYYGRLTEAAVRTVQASE 179 Query: 150 GLDPSGMVDSSTLEAM 165 GL P G+ S+TL A+ Sbjct: 180 GLTPDGIAGSTTLTAL 195 >gi|218508835|ref|ZP_03506713.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Brasil 5] Length = 62 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 35/45 (77%) Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +V+ T TP+KLATEVPV++VYISAW D I+QFRDDIY +D Sbjct: 1 QVIATGVNTPIKLATEVPVYYVYISAWGMPDGIVQFRDDIYQMDG 45 >gi|239944015|ref|ZP_04695952.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|239990470|ref|ZP_04711134.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 11379] gi|291447483|ref|ZP_06586873.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|291350430|gb|EFE77334.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces roseosporus NRRL 15998] Length = 259 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 15/110 (13%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 S P ++ A Y W L G+S +V++L+ R Sbjct: 23 TTASASQSPAPETGSASVGAARAADGCY-------TW----SGTLREGSSGEAVRQLQIR 71 Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++G + AF ++AV FQ +GL G+ +T + Sbjct: 72 --VAGYPGTGNQIAIDGAFGPATKAAVTRFQAAYGLAADGIAGPATFNKI 119 >gi|121535627|ref|ZP_01667433.1| 3D domain protein [Thermosinus carboxydivorans Nor1] gi|121305797|gb|EAX46733.1| 3D domain protein [Thermosinus carboxydivorans Nor1] Length = 193 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L++ L G + F AV FQ +GL G+V T Sbjct: 30 LRQGDRGEDVRYLQKMLADKGYYA--GAIDGIFGGATMRAVLEFQRDNGLVADGIVGKDT 87 Query: 162 LEAMNVPVDLRIR 174 L + R Sbjct: 88 LRYLERAAVEPSR 100 >gi|111020641|ref|YP_703613.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus jostii RHA1] gi|110820171|gb|ABG95455.1| probable N-acetylmuramoyl-L-alanine amidase [Rhodococcus jostii RHA1] Length = 399 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 66/219 (30%), Gaps = 32/219 (14%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL--------------SVAFDAYVESAVKLFQM 147 L G+ +V +R L G L FD +++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLAGLGFLHNGVADTRREGTNGSHWIAPDAVFDHHLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 + GL G+V +T +M R+ + L + + + Sbjct: 64 QRGLLVDGIVGPATYRSMKE-ASYRLGARTLIYQLSAPLYGDDVATLQTRLQDLGFYVGR 122 Query: 208 VE--------NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM--- 256 V+ + + + + P + + P ++ +++M+ Sbjct: 123 VDGFFGPQTHDSLSSFQREIGIAADGICGPATLRSLELLGTRVTGGSPHAMSEEEMVRSS 182 Query: 257 ------ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + DP D ++ + ++ W+ Sbjct: 183 GPQLSGKRIVIDPGLGGDTYGTIVRSAYGTISESDILWD 221 >gi|80159841|ref|YP_398585.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium phage c-st] gi|78675431|dbj|BAE47853.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium phage c-st] Length = 309 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V++L+ L G + F ++AV FQ +GL G+V Sbjct: 173 SSGLLKVGSREDKVKQLQANLNKLGYTCGNA--DGIFGQGTKNAVISFQRNNGLSADGVV 230 Query: 158 DSSTLEAMNVPVDLR 172 ST + +++R Sbjct: 231 GESTWNKILSNLEVR 245 >gi|254501060|ref|ZP_05113211.1| ErfK/YbiS/YcfS/YnhG superfamily [Labrenzia alexandrii DFL-11] gi|222437131|gb|EEE43810.1| ErfK/YbiS/YcfS/YnhG superfamily [Labrenzia alexandrii DFL-11] Length = 159 Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 47/196 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 V + + + + +++ L V NG+ +R V VG+ + + Sbjct: 3 VAAALTLEKAQAAEVVGFSGHQFRPGTIVIKNSERRLYLVLNGRQAIRYKVAVGKRQK-S 61 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 ++I P W + + Sbjct: 62 WTGQAQITAKYIKPDWSPSPEVRR------------------------------------ 85 Query: 289 NSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + P+ G N M + + N +H T P R + GC+R+ Sbjct: 86 ---DFPHLPTVIRGGAPNNPMGVAAMTLSNGN-YAIHGTNRPGSIG---RAVSYGCIRMA 138 Query: 348 N--IIDLDVWLLKDTP 361 N I DL + TP Sbjct: 139 NHDIQDLFRRVQVRTP 154 >gi|261407913|ref|YP_003244154.1| spore cortex-lytic enzyme [Paenibacillus sp. Y412MC10] gi|329922217|ref|ZP_08277934.1| spore cortex-lytic enzyme [Paenibacillus sp. HGF5] gi|261284376|gb|ACX66347.1| spore cortex-lytic enzyme [Paenibacillus sp. Y412MC10] gi|328942330|gb|EGG38599.1| spore cortex-lytic enzyme [Paenibacillus sp. HGF5] Length = 270 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G++ V L+ RL G + F + + AVK FQ G+ Sbjct: 39 PTFSQQTIKFGSTGEDVYELQGRLKYLGFYH--GKIDSVFGSKTQGAVKWFQSEFGMKVD 96 Query: 155 GMVDSS 160 G+V Sbjct: 97 GIVGPK 102 >gi|262043185|ref|ZP_06016321.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039463|gb|EEW40598.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 321 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 42/163 (25%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVI 246 +++N+ L GK + +G++ TP + + ++ NP W Sbjct: 98 DAPREGLVINLAELRLYYYPPGKNEVTIYPIGIGQLGGTTITPTMVTTVSDKRANPTWTP 157 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +I + G N Sbjct: 158 TANIRAR-----------------------------------YKAMGIELPAVVPAGPDN 182 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 M I + Y +H T F +R +SGC+R+R+ Sbjct: 183 PMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|256381064|ref|YP_003104724.1| cell wall hydrolase/autolysin [Actinosynnema mirum DSM 43827] gi|255925367|gb|ACU40878.1| cell wall hydrolase/autolysin [Actinosynnema mirum DSM 43827] Length = 379 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V +R L G L S FD VE AV+ FQ + GL G+V +T Sbjct: 4 LRRGDVGQDVAEVRATLTKLGLLT-DPHASRVFDLSVEHAVRTFQQQRGLITDGLVGPAT 62 Query: 162 LEAMN 166 A+ Sbjct: 63 YRALR 67 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 10/99 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ T A Y+ L L +P+ + V L+ERL+ G + Sbjct: 57 LVGPATYRALRDA--NYR--LGDRPLAFLIAQPV----TGDDVLTLQERLLELGY--DAG 106 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + F E A++ FQ +GL GM T+ A+ Sbjct: 107 RANGEFGQQTEQALRSFQSDYGLVVDGMCGPDTVRALRQ 145 >gi|62180593|ref|YP_217010.1| hypothetical protein SC2023 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128226|gb|AAX65929.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715065|gb|EFZ06636.1| ErfK/YbiS/YcfS/YnhG [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 309 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 52/175 (29%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAI--HGTNTN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGARVQI 230 >gi|325497248|gb|EGC95107.1| hypothetical protein ECD227_1345 [Escherichia fergusonii ECD227] Length = 274 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + + + +G+ R+TP + + R P W + ++ Sbjct: 65 MVVNVAEMRLYYYPPDSQTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE 124 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M I Sbjct: 125 -----------------------------------YAKRGESLPAFIPAGPENPMGLYAI 149 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+R+ +L + P +R I Sbjct: 150 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRDND--IKYLFDNVPVGTRVQI 197 >gi|159897497|ref|YP_001543744.1| stage II sporulation D domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890536|gb|ABX03616.1| Stage II sporulation D domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 462 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 92 GGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G P LP L G+S V+ + L G S AF A E AV+ FQ +G Sbjct: 329 GTTPSLPAWPSLRNGSSGNDVKAAQYLLRSHGY---SLTADGAFGAGTEQAVRSFQSANG 385 Query: 151 LDPSGMVDSSTLEAMNVPVD 170 L G++ T + V Sbjct: 386 LTADGIIGPQTYAKLIKTVQ 405 Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 21/137 (15%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ------TEKAIAFYQ---DILSRG 92 + + A TE+A+ +Q + + G Sbjct: 331 TPSLPAWPSLRNGSSGNDVKAAQYLLRSHGYSLTADGAFGAGTEQAVRSFQSANGLTADG 390 Query: 93 G-WPELPIRPLHL---GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 P+ + + G+S +V+ ++ L ++ + AF A E AV Q Sbjct: 391 IIGPQTYAKLIKTVQNGSSGDAVRAIQTLLGVT--------VDGAFGAGTEQAVLNLQAT 442 Query: 149 HGLDPSGMVDSSTLEAM 165 + L G+V T +A Sbjct: 443 YDLTRDGIVGPVTWQAA 459 >gi|256043103|ref|ZP_05446047.1| hypothetical protein Bmelb1R_01397 [Brucella melitensis bv. 1 str. Rev.1] gi|265989537|ref|ZP_06102094.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|263000206|gb|EEZ12896.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] Length = 140 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 9 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 66 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 67 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 92 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 93 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 121 >gi|21229926|ref|NP_635843.1| lytic enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188989879|ref|YP_001901889.1| putative lytic enzyme [Xanthomonas campestris pv. campestris str. B100] gi|21111435|gb|AAM39767.1| lytic enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167731639|emb|CAP49817.1| putative lytic enzyme [Xanthomonas campestris pv. campestris] Length = 576 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Query: 95 PELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRH 149 P P L G S V +L++ L G D F AV FQ +H Sbjct: 371 PSAPAGNGTLRHGEQSGDVGKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVIAFQKQH 430 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQ 175 GL P G+V +T A++ Q Sbjct: 431 GLQPDGVVGRNTQAALSTQPAQTQSQ 456 >gi|296329732|ref|ZP_06872217.1| murein transglycosylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674129|ref|YP_003865801.1| murein transglycosylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153230|gb|EFG94094.1| murein transglycosylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412373|gb|ADM37492.1| murein transglycosylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 167 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 12/148 (8%) Query: 217 STVIVGRVDRQTPILHSRIN--RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 V + + P L + + + + P P +I +++ + L NN + Sbjct: 22 FRVSTAALIQANPSLQTGVIAGQRIVIPGLPDPNTIPYHIAVSIGAKTLT-LYQNNQVIK 80 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 + V ++ +P +I + + + ++ +H T P Sbjct: 81 TY---PIAVGKILTQTPIGEFYIINRQRNPGGPFGAYWLSLSRQH-YGIHGTNNPSSIGK 136 Query: 335 VVRFETSGCVRVRN--IIDLDVWLLKDT 360 + GCVR+ N +I+L + T Sbjct: 137 ---AVSKGCVRMHNKDVIELASIVPNGT 161 >gi|256392367|ref|YP_003113931.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Catenulispora acidiphila DSM 44928] gi|256358593|gb|ACU72090.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Catenulispora acidiphila DSM 44928] Length = 375 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 4/114 (3%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVS 110 + G+ + + + + AI ++ W L P+ G+S + Sbjct: 255 LLNQGYTVPTSGVFDATTVAAVQDLQGAIGAIVASDGTVTDPTWEAL-GVPIRQGDSGNA 313 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 VQ L+ LI G + S FD AV+ Q HGL+P+G VD+ T A Sbjct: 314 VQALQYILINKG---AALTQSGDFDHDTHKAVQDMQRLHGLEPTGKVDTETWCA 364 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 16/105 (15%) Query: 73 ETIAQTEKAIAFYQDILSR----GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 +A+A I WP++ N+ V+ ++ L+ G + Sbjct: 213 REFPTLRRAVAH--GIGQHTFPDRTWPDIYDS-----NAGPVVRVVQWLLLNQGY---TV 262 Query: 129 GLSVAFDAYVESAVKLFQMRHG--LDPSGMVDSSTLEAMNVPVDL 171 S FDA +AV+ Q G + G V T EA+ VP+ Sbjct: 263 PTSGVFDATTVAAVQDLQGAIGAIVASDGTVTDPTWEALGVPIRQ 307 >gi|298244218|ref|ZP_06968024.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297551699|gb|EFH85564.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I+++ W L + G+SS +V ++ L G S ++ + + SAVK +Q Sbjct: 292 GIVAQQTWEALIT-TVTPGSSSAAVSAVQNLLSARGY---SVSVTGYYGSATASAVKSYQ 347 Query: 147 MRHGLDPSGMVDSSTLEAM 165 GL G V+ T A+ Sbjct: 348 SSRGLTADGTVEKGTWCAL 366 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 15/116 (12%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 +P + ++ K + Y WP L R S +V+ ++ L + G Sbjct: 219 LPALRHAVASRLNKPLPAY-------TWPTLKSRT-----SGNNVRTIQRLLQVRGY--- 263 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 S + F S+++ FQ GL +G+V T EA+ V V+ ++ Sbjct: 264 SVAVDGTFGPSTVSSIQSFQSTKGLSVNGIVAQQTWEALITTVTPGSSSAAVSAVQ 319 >gi|290957976|ref|YP_003489158.1| peptidoglycan binding protein [Streptomyces scabiei 87.22] gi|260647502|emb|CBG70607.1| putative peptidoglycan binding protein [Streptomyces scabiei 87.22] Length = 311 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 5/154 (3%) Query: 95 PELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P + L G+ + V+ L+ RL L G + +D AV FQ + GL Sbjct: 98 PTVAPTVLWAQGDEGLDVRELQARLRQIAWL--FTGPTGTYDDLTVQAVSGFQGKRGLPR 155 Query: 154 SGMVDSSTLEAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 +G DS T + + + + R + ++ + +L + +G Sbjct: 156 TGKTDSVTWARLLSMTREPGKWDLYAYGGQPAASPDPRCLTGRALCISKTSRTLRWMVDG 215 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + V G T + + + Sbjct: 216 RTLTTVEVRFGSAYTPTREGLFHVYFKSRDHWST 249 >gi|322382702|ref|ZP_08056554.1| murein transglycosylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153311|gb|EFX45747.1| murein transglycosylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 114 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%) Query: 274 IDEKGKEVFVEEVD-----WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 + + G+ V V SP+ I + P + + + +H T + Sbjct: 19 LYDNGRVVRTYPVAVGKQVTQSPKGTYSIINKQPNPGGPFGAFWMGLSKLH-YGIHGTND 77 Query: 329 PILFNNVVRFETSGCVRVRNIIDL 352 P + GC+R+ N L Sbjct: 78 PSSIGK---AVSHGCIRMYNQDVL 98 >gi|119714782|ref|YP_921747.1| peptidoglycan binding domain-containing protein [Nocardioides sp. JS614] gi|119535443|gb|ABL80060.1| Peptidoglycan-binding domain 1 protein [Nocardioides sp. JS614] Length = 309 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 5/150 (3%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L P L G+ V+ L+ RL + ++ + +AV+ FQ + + Sbjct: 95 PTLVPGPRLLGPGDQGDEVRDLQARLKQI--YWFNTDVTGVYGDVTATAVRGFQAKREIP 152 Query: 153 PSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 +G VD TL+ + + +L L + R + ++ +++L V +G Sbjct: 153 VTGEVDQRTLDRLRAMTSTPTGAELHNRGNTPGALDARCRTGRVLCIDKTSSTLRWVVDG 212 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 V V G T + + Sbjct: 213 TVRQTLDVRFGASTTPTREGVFHVYLKDAD 242 >gi|298292300|ref|YP_003694239.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296928811|gb|ADH89620.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 401 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 46/184 (25%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 + P ++ L NL R + K ++++ P L V+ G +R + VGR Sbjct: 207 DQPETGPVKALPANLQRQEVDYVTKEPAGTIVIDTPNTYLYYVQGGGKAIRYGIGVGREG 266 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 T RI+ W P +I++ Sbjct: 267 -FTWAGTERISAKKEWADWRPPAEMIERQ------------------------------- 294 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 P G N + + + Y +H T +P + +SGC+ Sbjct: 295 --------PYLPRFMAGGPGNPLGARTMYL--GGTIYRIHGTNQPSTIGKFM---SSGCI 341 Query: 345 RVRN 348 R+ N Sbjct: 342 RMLN 345 >gi|300780168|ref|ZP_07090024.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium genitalium ATCC 33030] gi|300534278|gb|EFK55337.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium genitalium ATCC 33030] Length = 386 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 18/131 (13%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGN 106 F+ + + S ++ + +AQT KA + IL G E+ +R L LG Sbjct: 24 FEGDVGEWNRRSFSQAEMLFDDELAQTLKAFQQSRGILPSGDIDEITLRELRHASYTLGA 83 Query: 107 S-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 V +L+++L G + F +A++ +Q+ +G+ G Sbjct: 84 RVLSYQPSQIMVGDDVGQLQKQLQELGFYS--GRVDGHFGPDTHAALQDYQINYGIQDDG 141 Query: 156 MVDSSTLEAMN 166 + T+ A++ Sbjct: 142 ICGPETMHALS 152 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 12/74 (16%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQMRHGLD 152 G+SS V +R L G L +G + FD + +K FQ G+ Sbjct: 2 GDSSARVAEVRSTLARLGLLPGFEGDVGEWNRRSFSQAEMLFDDELAQTLKAFQQSRGIL 61 Query: 153 PSGMVDSSTLEAMN 166 PSG +D TL + Sbjct: 62 PSGDIDEITLRELR 75 >gi|226314511|ref|YP_002774407.1| hypothetical protein BBR47_49260 [Brevibacillus brevis NBRC 100599] gi|226097461|dbj|BAH45903.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 237 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 11/102 (10%) Query: 268 DNNIHMIDEKGKEVFVEEV---DWNSPEPPNFIFRQDPGKI--NAMASTKIEFYSRNNTY 322 + ++ + GK + V + ++P P GK + + Y Sbjct: 56 RKHKLIVKKHGKTIKTYPVAVGNPSTPTPVGEYKVIYKGKDWGPSFGPRWLGLNVPWGIY 115 Query: 323 -MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 +H T +P + GC+R+RN +I+L + T Sbjct: 116 GIHGTNKPYSIGQ---HLSHGCIRMRNNDVIELFKMIPLGTK 154 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P R L G+ VQ ++ RL +G F + +A+K FQ L Sbjct: 163 GDPSHDPRDLAEGDVGGDVQLIQSRLKSAGYYH--GICDGKFRSSTTAALKKFQRDRKLK 220 Query: 153 PSGMVDSSTLEAMN 166 P+G+V S + + Sbjct: 221 PNGVVSSKIYQELG 234 >gi|218458849|ref|ZP_03498940.1| hypothetical protein RetlK5_05028 [Rhizobium etli Kim 5] Length = 183 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 17/180 (9%), Positives = 35/180 (19%), Gaps = 25/180 (13%) Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNI-PA-ASLEAVENGKVGLRSTVIVGRVDRQTP 229 + + ++ Y + P+ A E + Sbjct: 5 PVVSYTITPADAAGPFVAEIPEDYSHKALLPSLAYTSTTEMLAERFHMDEAFLKEMNPGA 64 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNIHMID------------E 276 I + + + R+ Y N+ Sbjct: 65 DFSVPGTVIKVVNPGEPKSGEVARIIADKGRKQVFAYDGAGNLIAAYPASIGSTDTPSPS 124 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQ---------DPGKINAMASTKIEFYSRNNTYMHDTP 327 V + P F+Q PG + + + +H TP Sbjct: 125 GTVTVERVAFNPGYTYNPKINFQQGANDKILNIPPGPNGPVGTVWMALSKP-TYGIHGTP 183 >gi|170078936|ref|YP_001735575.1| peptidoglycan binding domain-containing protein [Synechococcus sp. PCC 7002] gi|169886605|gb|ACB00319.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7002] Length = 537 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 14/108 (12%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE----- 163 V L+ L +G L S + F E+AV+ FQ + L +G VD T Sbjct: 76 DDVGYLQAFLQAAGFLPRSAVIDGIFGRTTEAAVRSFQRANKLPKTGTVDPRTWRTIERY 135 Query: 164 -----AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 A + Q L+Q + +L + Sbjct: 136 QQLFLASPATAEPPSEQAP----EPTSFLQQDRPEKLLLRRGAGFEIS 179 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V L++ L + + L F E+ VK FQ+R L G+V ST EA+ Sbjct: 184 AVYYLQKLLQRGLFIPETAKLDGKFGRQTENGVKFFQVRQKLVADGIVGLSTWEALEK 241 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + F + E AV+ FQM L G+V + T Sbjct: 306 PIDGHFGSQTEQAVRRFQMIAELTIDGVVGAQTW 339 >gi|312200969|ref|YP_004021030.1| cell wall hydrolase/autolysin [Frankia sp. EuI1c] gi|311232305|gb|ADP85160.1| cell wall hydrolase/autolysin [Frankia sp. EuI1c] Length = 371 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 18/112 (16%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGNS-----------SVSVQRLR 115 E + + +A + + G R L LG+ V L+ Sbjct: 35 DEDLDRAVRAFQQSRGLSVDGIIGPDTARSLEEARHGLGDRLLYHAPSQPLIGDDVAALQ 94 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ERL G F ESAV+ FQ GL+P G TL + Sbjct: 95 ERLSNMGF--DVGRSDGIFGPRTESAVRDFQRNRGLEPDGRCGPHTLRELKR 144 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + FD ++ AV+ FQ GL G++ T ++ Sbjct: 28 ATRAEVFDEDLDRAVRAFQQSRGLSVDGIIGPDTARSLE 66 >gi|167465388|ref|ZP_02330477.1| YkuD [Paenibacillus larvae subsp. larvae BRL-230010] Length = 112 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%) Query: 274 IDEKGKEVFVEEVD-----WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 + + G+ V V SP+ I + P + + + +H T + Sbjct: 17 LYDNGRVVRTYPVAVGKQVTQSPKGTYSIINKQPNPGGPFGAFWMGLSKLH-YGIHGTND 75 Query: 329 PILFNNVVRFETSGCVRVRNIIDL 352 P + GC+R+ N L Sbjct: 76 PSSIGK---AVSHGCIRMYNQDVL 96 >gi|145223739|ref|YP_001134417.1| peptidoglycan binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315444065|ref|YP_004076944.1| negative regulator of beta-lactamase expression [Mycobacterium sp. Spyr1] gi|145216225|gb|ABP45629.1| Peptidoglycan-binding domain 1 protein [Mycobacterium gilvum PYR-GCK] gi|315262368|gb|ADT99109.1| negative regulator of beta-lactamase expression [Mycobacterium sp. Spyr1] Length = 288 Score = 63.1 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 15/83 (18%) Query: 95 PELPIRP-----LHLGNSSVSVQRLRERL-----IISGDLDPSKGLSVAFDAYVESAVKL 144 P +P+ L+ G+ V L+ RL +GDL + + E+AV+ Sbjct: 199 PTVPVGEYAEVLLYRGSRGPQVAELQRRLKHAYAAYAGDL----RIDGVYGPDTEAAVRE 254 Query: 145 FQMR-HGLDPSGMVDSSTLEAMN 166 FQ R GL G+V +T A+ Sbjct: 255 FQRRTAGLKVDGVVGPATAAALR 277 >gi|301066442|ref|YP_003788465.1| periplasmic protease [Lactobacillus casei str. Zhang] gi|300438849|gb|ADK18615.1| Periplasmic protease [Lactobacillus casei str. Zhang] Length = 461 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 371 INATQLKPGDKDSDVKSLQQMLTAL--KVGSVTVNSQYDDATQAAVKTFQQANKLDATGT 428 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 429 ADQDTLATLAQKLSAQLTK 447 >gi|225016832|ref|ZP_03706024.1| hypothetical protein CLOSTMETH_00744 [Clostridium methylpentosum DSM 5476] gi|224950406|gb|EEG31615.1| hypothetical protein CLOSTMETH_00744 [Clostridium methylpentosum DSM 5476] Length = 226 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 L ++ V ++++L G + + + +SAV FQ + GL G+ +TL Sbjct: 39 RLWSTGNEVTAIQQKLKERGLYTGN--VDGIYGPNTQSAVIKFQKQQGLSADGIAGPATL 96 Query: 163 EAMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYV 196 + + + + N+ + + + + G Y Sbjct: 97 KRLGITIGSTPSATTANVNLLARIISAEGRGESYT 131 >gi|78043998|ref|YP_360473.1| prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase [Carboxydothermus hydrogenoformans Z-2901] gi|77996113|gb|ABB15012.1| prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + LG+ V +++ L G L + F A E+AVK FQ + G+V T Sbjct: 3 IKLGDKGSQVIEVQKMLKQLGFLK--DKVDGVFGANTEAAVKSFQRTKQIAIDGIVGPVT 60 Query: 162 LEAMNVPVDLRIRQLQ 177 + L+ + Sbjct: 61 YNLLRKDFSLKTAAIT 76 >gi|325570956|ref|ZP_08146575.1| C-terminal processing peptidase [Enterococcus casseliflavus ATCC 12755] gi|325156282|gb|EGC68466.1| C-terminal processing peptidase [Enterococcus casseliflavus ATCC 12755] Length = 476 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 94 WPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P LP L G SS +V L + L G F+ +AVK FQ H L Sbjct: 383 FPPLPRDNALKAGQSSTAVNNLNQFLKALGY----ATSGDTFNDETTAAVKTFQEAHDLK 438 Query: 153 PSGMVDSSTLEAMNVPVDLRIR 174 +G VD+ T +A+ V +++ Sbjct: 439 VTGEVDADTAQAIEKEVTEKLK 460 >gi|258510344|ref|YP_003183778.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477070|gb|ACV57389.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 792 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V L+ L G FDA E+ VK FQ GL G+V T Sbjct: 57 LSYGSTGAYVAILQNALNALGYDVGQAT--GVFDATTEAQVKAFQQAEGLGVDGIVGPMT 114 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 A+ V + + V L R L++ Sbjct: 115 WGALAKAVADYRQVMTV-LTRPSSLVQH 141 >gi|302876319|ref|YP_003844952.1| Peptidase M15A [Clostridium cellulovorans 743B] gi|307687054|ref|ZP_07629500.1| Peptidase M15A [Clostridium cellulovorans 743B] gi|302579176|gb|ADL53188.1| Peptidase M15A [Clostridium cellulovorans 743B] Length = 220 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G++ V L+++LI G G F Y AVK Q G+ G+V Sbjct: 29 AAVLQSGSTGAEVTALQQKLIRLGFYLGPSGADGDFGQYTVDAVKGIQSASGITTDGIVG 88 Query: 159 SST 161 S+T Sbjct: 89 SAT 91 >gi|329938065|ref|ZP_08287516.1| lipoprotein [Streptomyces griseoaurantiacus M045] gi|329302554|gb|EGG46444.1| lipoprotein [Streptomyces griseoaurantiacus M045] Length = 293 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 5/144 (3%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G+ V+ L+ RL L S +D AV FQ + GL +G Sbjct: 83 PARVLWSEGDHGRDVRELQARLKQVAWLFDGPTGS--YDDLTAKAVGGFQGKRGLPRTGR 140 Query: 157 VDSSTLEAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 D+ T + + + + R + ++ + +L + +G+ Sbjct: 141 ADTVTWQRLLAMTHEPTKWELYAFGGQPAAPPDPRCTTGRVLCISKTSRTLRWMIDGRTV 200 Query: 215 LRSTVIVGRVDRQTPILHSRINRI 238 V G T + Sbjct: 201 SVMPVRFGTELTPTREGVFHVYWK 224 >gi|327198078|ref|YP_004306445.1| gp33 [Burkholderia phage KL3] gi|310657212|gb|ADP02326.1| gp33 [Burkholderia phage KL3] Length = 269 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G + +S +D E AVK Q G+ G+ +T Sbjct: 4 LRFNDRGAEVGLLQQRLLRAGY---ALDVSHLYDEATEQAVKALQAAAGIVVDGLAGPNT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 ++ R + ++ R Sbjct: 61 YAVLSAGQRDRKHLTEADIAR 81 >gi|257438481|ref|ZP_05614236.1| spore cortex-lytic enzyme, pre-pro-form [Faecalibacterium prausnitzii A2-165] gi|257199060|gb|EEU97344.1| spore cortex-lytic enzyme, pre-pro-form [Faecalibacterium prausnitzii A2-165] Length = 866 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR---ERLIISGDLDPS 127 S + +A+ LS G W L +G+S +V++L+ L PS Sbjct: 396 SVKDLAELTSEGETAAGTLSDGTWG---GTILRVGSSGSAVEQLQFWLNTLAQYESSIPS 452 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + + AV+ FQ R+GL G+V +T + Sbjct: 453 VAVDGVYGSGTAGAVRAFQRRYGLSVDGVVGRATWTEL 490 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL G+ +V L+ +L I+ D + F + + VK FQ + L Sbjct: 320 PGSPLRRGDRGTAVFTLQRQLNRITKDYPFLGLLTVDGVFGSRMTETVKRFQKQFNLTAD 379 Query: 155 GMVDSSTLEAMN 166 G+V T ++ Sbjct: 380 GVVGRQTWYKIS 391 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 84 FYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLR--ERLIISGDLDPSK-GLSVAFDAYVE 139 ++ I S G P P L G+S +V+ ++ ++ + + + + F A Sbjct: 493 QFRSIQSDNGRPNAYPGTALRQGSSGQNVRLVQFWLKIARTVYPNLNTLTVDGKFGAGTA 552 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 +AV+ FQ GL G+V +T + V D+ R L +L + + G V Sbjct: 553 AAVRRFQSYFGLTSDGVVGRTTWNKLYEVYNDIANRLLTASLRPGEYPGVLRRGSTGTAV 612 Query: 199 NIPAASLEAV 208 L + Sbjct: 613 RELQFYLYLM 622 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 14/187 (7%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 F++YL+ S+ I S N RF +G + + K Sbjct: 617 FYLYLMSAYESSIPAVSIDGSFGAATENAVR---AYQRFAKLTVDGVVGRTTWNSLYGKA 673 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQ---RLRERLIISGDLDPSKGL 130 +I + + + + G PL +G + +V L +R+ D S L Sbjct: 674 SILRVSGPVVTLKRLPYLGT-------PLAVGATGDAVLYYNLLLQRIAYYFDSVESPPL 726 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S + ++ + Q L +G+ D+ T A+ + L++ + N R + Sbjct: 727 SDRYTDETAASTRSAQALLDLPETGVADAETWTAVEA-LSLQLAAVSPNPDRDAGQADVY 785 Query: 191 MGLRYVL 197 G Sbjct: 786 PGRAMKE 792 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-----FDAYVESAVKLFQMRHGLD 152 P R + G+ V ++ + L G + G F V+ Q R L Sbjct: 786 PGRAMKEGSVGPDVGQIEQWLN--GRYMRNCGEDYVTENFLFGPKETEGVRAAQERADLL 843 Query: 153 PSGMVDSSTLEAMNV 167 +G V+ T A+ Sbjct: 844 VTGTVNEETWAALRA 858 >gi|119488672|ref|ZP_01621681.1| endopeptidase, cell wall lytic activity [Lyngbya sp. PCC 8106] gi|119455095|gb|EAW36236.1| endopeptidase, cell wall lytic activity [Lyngbya sp. PCC 8106] Length = 364 Score = 63.1 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 14/151 (9%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT-EKAIAFYQDI--------LSRGG 93 + + + S QT EKA+ Q I + Sbjct: 52 LRRGNYSQNVVTLQKDLKQAYCFPGDLRSTGYYGQTTEKAVKQLQRIHALQVDGIAGKQT 111 Query: 94 WPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 L L + V++L+++L G + + F +AV FQ G Sbjct: 112 RSALEAYKTCFLKYRSQGEEVKKLQQQLNNWGF--SAGTVDGIFGRKTRAAVIRFQKYQG 169 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 L P G+V T +A+ P + + Sbjct: 170 LKPDGIVGPKTTQALWKPRTQVSQTPTTTIE 200 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 27/73 (36%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L GN S +V L++ L + + + E AVK Q H L Sbjct: 45 PVITAEVLRRGNYSQNVVTLQKDLKQAYCFPGDLRSTGYYGQTTEKAVKQLQRIHALQVD 104 Query: 155 GMVDSSTLEAMNV 167 G+ T A+ Sbjct: 105 GIAGKQTRSALEA 117 >gi|262204653|ref|YP_003275861.1| cell wall hydrolase/autolysin [Gordonia bronchialis DSM 43247] gi|262088000|gb|ACY23968.1| cell wall hydrolase/autolysin [Gordonia bronchialis DSM 43247] Length = 396 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 17/82 (20%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS-----------------VAFDAYVESAVKL 144 LG+ +V +R L G L FDA + AV+ Sbjct: 4 FRLGDHGSAVAEIRSILAGRGLLSAPSSQPTGLTNGTRSADGWTAPEDIFDAETDHAVRA 63 Query: 145 FQMRHGLDPSGMVDSSTLEAMN 166 FQ GL G+V +T A+ Sbjct: 64 FQQERGLIVDGIVGPATYRALR 85 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 19/127 (14%) Query: 48 VNDRFDNFLARVDMGIDSDIP-----IISKETIAQTEKAIAFY--QDILSRGGWPELPIR 100 D FD + I+ T +A + + R P + Sbjct: 49 PEDIFDAETDHAVRAFQQERGLIVDGIVGPATYRALREASYKLGTRVLAFRFSAPMV--- 105 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 V L+ RL G + + F ++AV+L+Q +GL G+ + Sbjct: 106 -------GDDVATLQSRLQNLGYY--TSLVDGVFGESTDNAVRLYQSEYGLSSDGICGPA 156 Query: 161 TLEAMNV 167 TL ++ Sbjct: 157 TLRSLER 163 >gi|157692901|ref|YP_001487363.1| hypothetical protein BPUM_2134 [Bacillus pumilus SAFR-032] gi|157681659|gb|ABV62803.1| hypothetical protein BPUM_2134 [Bacillus pumilus SAFR-032] Length = 169 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 47/182 (25%), Gaps = 59/182 (32%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G YV++N L ++ G++ G+ TP I Sbjct: 22 NPLPGDPYVIINKQTNELAYIDQGQIQKIYPASTGKTTDLTPEGEFTIMIK--------- 72 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 +DP Y + NI K N Sbjct: 73 ------------AKDPYY-RKKNIE----------------------------GGAKNNP 91 Query: 308 MASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + I F +H T + F T+GCVR+ N + L L T Sbjct: 92 LGRRWIGFDARGTDGRTYGIHGTSDETSIGK---FITAGCVRLHNQDVELLFDQLPVGTK 148 Query: 362 TW 363 W Sbjct: 149 VW 150 >gi|309389108|gb|ADO76988.1| cell wall hydrolase SleB [Halanaerobium praevalens DSM 2228] Length = 229 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + V L++RL S + + AVK FQ GL G+ L+ Sbjct: 42 GDEGIDVAVLQQRLKKLNYYVGS--VDGIYGQATIEAVKKFQADKGLPVDGVFGQRALK 98 >gi|291447641|ref|ZP_06587031.1| Muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|291350588|gb|EFE77492.1| Muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 15998] Length = 245 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G + V +L+ R ++G + + ++ +AVK FQ +GL G+ Sbjct: 39 TRTLKAGATGNDVTQLQVR--VAGYPGYNAVLAIDGSYGPATTAAVKRFQAAYGLAADGV 96 Query: 157 VDSSTLEAM 165 +T + Sbjct: 97 AGPATQAKL 105 >gi|239944169|ref|ZP_04696106.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|239990625|ref|ZP_04711289.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 11379] Length = 223 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G + V +L+ R ++G + + ++ +AVK FQ +GL G+ Sbjct: 17 TRTLKAGATGNDVTQLQVR--VAGYPGYNAVLAIDGSYGPATTAAVKRFQAAYGLAADGV 74 Query: 157 VDSSTLEAM 165 +T + Sbjct: 75 AGPATQAKL 83 >gi|111226207|ref|YP_717001.1| N-acetymuramyl-L-alanine amidase [Frankia alni ACN14a] gi|111153739|emb|CAJ65497.1| N-acetymuramyl-L-alanine amidase [Frankia alni ACN14a] Length = 423 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 33/104 (31%), Gaps = 18/104 (17%) Query: 80 KAIAFYQDILSRGGWPELPIRPLH-----LGNS-----------SVSVQRLRERLIISGD 123 +A + + G R L LG+ V L+ERL G Sbjct: 95 RAFQQSRGLSVDGILGPNTARALEEARHNLGDRLLYFSAAHPFVGDDVAALQERLFNMGF 154 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 F ESAV+ FQ GLDP G TL + Sbjct: 155 --DIGRTDGIFGPRTESAVRDFQRNRGLDPDGRCGPRTLRELKR 196 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 53/118 (44%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS------------------------------ 131 + LG+ +V +R L G L + S Sbjct: 1 MRLGDQDSAVAEVRAALTYLGFLPVTPRQSGERGEAAPAVARPGESKGVGLPAAAADPAA 60 Query: 132 -----------------------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 FD +++A++ FQ GL G++ +T A+ Sbjct: 61 AVGVHSPAEEPAGGAGGAAPAPPDRFDRDLDNALRAFQQSRGLSVDGILGPNTARALE 118 >gi|325288682|ref|YP_004264863.1| NLP/P60 protein [Syntrophobotulus glycolicus DSM 8271] gi|324964083|gb|ADY54862.1| NLP/P60 protein [Syntrophobotulus glycolicus DSM 8271] Length = 222 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G++ SV L+ +L G + F ++AVK FQ L P G+V T Sbjct: 30 LKMGSTGSSVVELQIKLSSLGY--SAGTADGIFGPKTQAAVKTFQSSTSLTPDGIVGPLT 87 Query: 162 LEAMNVPVDLRIRQLQVN 179 A+N ++R + N Sbjct: 88 QNALN-SAYAKVRTTEAN 104 >gi|302561223|ref|ZP_07313565.1| N-acetylmuramyl-L-alanine amidase [Streptomyces griseoflavus Tu4000] gi|302478841|gb|EFL41934.1| N-acetylmuramyl-L-alanine amidase [Streptomyces griseoflavus Tu4000] Length = 262 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 22/156 (14%) Query: 21 PMGLSLVEKP-IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 G+S P + E + + FD S P Sbjct: 116 TDGISFTSYPTLKRGATGEHVRALQTLLKAQSFDPGTVDG-----SFGPATESAV----- 165 Query: 80 KAIAFYQDILSRG-----GWPEL-PIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 KA + +++ G W L + G++ +V+RL+ L + L + + Sbjct: 166 KAFQASRKLVADGSVGPKTWTALLSAGQVVTVRGGSTGEAVKRLQRALTAA--LGRTVAV 223 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F + ESAV +Q GL G+ +T A+ Sbjct: 224 DGTFGSATESAVVSYQSSRGLTADGIAGPATWSALQ 259 >gi|239830893|ref|ZP_04679222.1| lipoprotein [Ochrobactrum intermedium LMG 3301] gi|239823160|gb|EEQ94728.1| lipoprotein [Ochrobactrum intermedium LMG 3301] Length = 266 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 105 PAIPYDKVPKQFRRQIVPDPTGQAPGTIVVSLKDHYLYYVLPGGEALRYGVGIGKAGFE- 163 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 164 WQGTANVQYKKQWPRWTPPPEMIQR----------------------------------- 188 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + Y +H +PE + +SGC+R Sbjct: 189 -KPELEKYRNGQEPGPQNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 244 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 245 LMNQDIIDLYNRVQGKAP 262 >gi|225573657|ref|ZP_03782412.1| hypothetical protein RUMHYD_01851 [Blautia hydrogenotrophica DSM 10507] gi|225038950|gb|EEG49196.1| hypothetical protein RUMHYD_01851 [Blautia hydrogenotrophica DSM 10507] Length = 330 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++P + L G+ V+ L+ +LI G F E AV+ FQ + L Sbjct: 177 QVPEKNFLSRGDQGEQVKNLQRQLISLSYSCGENGADGDFGKDTEKAVEAFQKEYNLTSD 236 Query: 155 GMVDSSTLEAMNV 167 G T++ + Sbjct: 237 GAAGPETMKKLER 249 >gi|167757364|ref|ZP_02429491.1| hypothetical protein CLORAM_02914 [Clostridium ramosum DSM 1402] gi|167703539|gb|EDS18118.1| hypothetical protein CLORAM_02914 [Clostridium ramosum DSM 1402] Length = 248 Score = 63.1 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 9/137 (6%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDI 88 + S + N S + + + P S+ + + Sbjct: 115 NGVQVSTCANVSNGSKSRKWTKHGKSPYIDYGTTVSTPAPEPSQP----VDDWLNRLNAE 170 Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++R G+ P + G + ++ERL G + + F + A+ +FQ Sbjct: 171 IARQGFSSYP--TVKKGAKGGITRLIQERLNSVGF---NLVVDGDFGKKTKEAIIVFQRN 225 Query: 149 HGLDPSGMVDSSTLEAM 165 GL G+V S+T + + Sbjct: 226 RGLVQDGVVGSNTWDWL 242 >gi|282896383|ref|ZP_06304404.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] gi|281198671|gb|EFA73551.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] Length = 252 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 + GWP L LGN+ V +L+ L G L F +E AVK Q+R+G Sbjct: 177 QSGWPI-----LRLGNTGAEVTKLQRLLRSLGFFSS--PLDGKFSLTLERAVKAAQLRYG 229 Query: 151 LDPSGMVDSSTLEAMNV 167 L G+ + T E Sbjct: 230 LTADGVAGAQTWEVFIQ 246 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 24/177 (13%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 +I G + L +G+ SV L+ L + G + + AV F+ Sbjct: 19 EIAQVTGVGSINRPILKIGSQGESVSELQATLALLGFYS--GPVDGVYRDSTAKAVSQFK 76 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 GL P G+VD+ T + + V + N P Sbjct: 77 QVVGLAPDGIVDTITWQKLFPSVPNIATT-----------TAPPPAISSTPRNKPENRQP 125 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 NG+ G + R + P I+ + +++P Sbjct: 126 TTRNGREG---------NSNNNITGKTTQPRQVVTKPPTQP--IMVFKPTPVNQRNP 171 >gi|271969998|ref|YP_003344194.1| hypothetical protein Sros_8817 [Streptosporangium roseum DSM 43021] gi|270513173|gb|ACZ91451.1| hypothetical protein Sros_8817 [Streptosporangium roseum DSM 43021] Length = 276 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 18/141 (12%) Query: 87 DILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + GG P P LH G+ V++++ RL G + + + AV F Sbjct: 63 RVSGSGGVPARPQFPTLHPGDEGALVEKVQSRLDRLGF--KAGPPGSEYGPALRMAVWAF 120 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q +GL VD T +A++ P +R +R++ L +++ L Sbjct: 121 QKANGLPAVDRVDPPTWQALSHPERVRPLVPSGGSVRVEIDLRRQL-------------L 167 Query: 206 EAVENGKVGL--RSTVIVGRV 224 A ++GK L + G+ Sbjct: 168 TAWKDGKPALISHISTGTGKP 188 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 9/66 (13%) Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR-FETSGCVRV--RNII 350 +R + Y H + V R + GC+RV N Sbjct: 205 FRAWWRTAGWTTGPLGEQFYTVYFNGGIGFHGS------ERVPRHPASHGCIRVPLHNAR 258 Query: 351 DLDVWL 356 L + Sbjct: 259 PLFDMI 264 >gi|86748516|ref|YP_485012.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86571544|gb|ABD06101.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 252 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 51/189 (26%), Gaps = 45/189 (23%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 QL L R ++++ L + G +R V VGR T Sbjct: 76 AQLSDRLRRQVVAYNINQPAGTIVIDTANTYLYYLLGGGRAIRYGVGVGREG-FTWAGTQ 134 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 I R P W P +I + Sbjct: 135 TITRKAEWPDWHPPAQMIARQ--------------------------------------- 155 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 P G N + + + S +H T +P F +SGC+R+ N D+ Sbjct: 156 PYLPRFMAGGPGNPLGARAMYLGSTE-YRIHGTNDPSTIGK---FVSSGCIRLTN-EDVA 210 Query: 354 VWLLKDTPT 362 + T Sbjct: 211 DLFSRATVG 219 >gi|303240113|ref|ZP_07326634.1| spore cortex-lytic enzyme [Acetivibrio cellulolyticus CD2] gi|302592382|gb|EFL62109.1| spore cortex-lytic enzyme [Acetivibrio cellulolyticus CD2] Length = 231 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G + V ++++RL G D S +S +D AV+ FQM + L +G+ + Sbjct: 32 AEKLAPGMENDDVMKVQQRLKNWGYYDGS--ISGNYDLNTFLAVRDFQMTYKLPANGIAE 89 Query: 159 SSTLEAMNVP 168 TLE+M + Sbjct: 90 EKTLESMGLT 99 >gi|283785786|ref|YP_003365651.1| hypothetical protein ROD_21001 [Citrobacter rodentium ICC168] gi|282949240|emb|CBG88850.1| putative exported protein [Citrobacter rodentium ICC168] Length = 307 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W P + ++ Sbjct: 99 IIVNVAEMRLYYYPPGTNTVEVLPIGIGQAGRETPRNWITTVQRKQEAPSWT-PTANTRR 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + P + G N M I Sbjct: 158 EYAKRGETLPAF----------------------------------VPAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 H T F +R + GC+R+ N D +L ++ P +R I + Sbjct: 184 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLCN--DDIKYLFENVPVGTRVQIIDRPV 236 Query: 374 TRKT-----TPVKLATEV 386 T V++ + Sbjct: 237 KTTTEPDGSRWVEVHEPL 254 >gi|167037751|ref|YP_001665329.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040445|ref|YP_001663430.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter sp. X514] gi|256752473|ref|ZP_05493331.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|289578529|ref|YP_003477156.1| peptidoglycan-binding protein [Thermoanaerobacter italicus Ab9] gi|297544804|ref|YP_003677106.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300914496|ref|ZP_07131812.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307724268|ref|YP_003904019.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|320116165|ref|YP_004186324.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389918|ref|ZP_08211481.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] gi|166854685|gb|ABY93094.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X514] gi|166856585|gb|ABY94993.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748675|gb|EEU61721.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|289528242|gb|ADD02594.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter italicus Ab9] gi|296842579|gb|ADH61095.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300889431|gb|EFK84577.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307581329|gb|ADN54728.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|319929256|gb|ADV79941.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993978|gb|EGD52407.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] Length = 77 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +L R L+ G V +L+ L G + F ++AV FQ +GL Sbjct: 4 QQLGSRLLYEGTVGYDVLQLQMILQSLGY--DPGPIDGIFGPRTKNAVMRFQRDNGLKVD 61 Query: 155 GMVDSSTLEAMNV 167 G+V T+ +N+ Sbjct: 62 GIVGPETMRVINM 74 >gi|327385617|gb|AEA57091.1| S41A family carboxy-terminal peptidase [Lactobacillus casei BD-II] Length = 461 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 371 INATQLKPGDKGSDVKSLQQMLTAL--KVGSVTVNSQYDDATQAAVKTFQQANKLDATGT 428 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 429 ADQDTLATLAQKLSAQLTK 447 >gi|227535121|ref|ZP_03965170.1| Carboxy-terminal processing proteinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187262|gb|EEI67329.1| Carboxy-terminal processing proteinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 390 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 300 INATQLKPGDKGSDVKSLQQMLTAL--KVGSVTVNSQYDDATQAAVKTFQQANKLDATGT 357 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 358 ADQDTLATLAQKLSAQLTK 376 >gi|191638388|ref|YP_001987554.1| Carboxy-terminal processing proteinase [Lactobacillus casei BL23] gi|190712690|emb|CAQ66696.1| Carboxy-terminal processing proteinase [Lactobacillus casei BL23] gi|327382417|gb|AEA53893.1| S41A family carboxy-terminal peptidase [Lactobacillus casei LC2W] Length = 483 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 393 INATQLKPGDKGSDVKSLQQMLTAL--KVGSVTVNSQYDDATQAAVKTFQQANKLDATGT 450 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 451 ADQDTLATLAQKLSAQLTK 469 >gi|116494881|ref|YP_806615.1| periplasmic protease [Lactobacillus casei ATCC 334] gi|116105031|gb|ABJ70173.1| Periplasmic protease [Lactobacillus casei ATCC 334] Length = 461 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 371 INATQLKPGDKGSDVKSLQQMLTAL--KVGSVTVNSQYDDATQAAVKTFQQANKLDATGT 428 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 429 ADQDTLATLAQKLSAQLTK 447 >gi|220907385|ref|YP_002482696.1| peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7425] gi|219863996|gb|ACL44335.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7425] Length = 160 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 94 WPELPIR----PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 W +P L+ ++ +V L+E L G L F A E+AV FQ R+ Sbjct: 11 WRPVPAALTGPVLYPWDAGPAVFELQELLNAHGF---RLKLDGDFGAKTETAVGEFQRRY 67 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 GL G+V T A+ V R L+ Sbjct: 68 GLRVDGIVGPQTWVALKQKVQPGTRVLK 95 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 9/94 (9%) Query: 79 EKAIAFYQDILSRGGWPELPIRP------LHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + I+ W L + L G++ V +L+ L ISG Sbjct: 65 RRYGLRVDGIVGPQTWVALKQKVQPGTRVLKRGHTGADVFQLQWLLQISG---QQVVRDG 121 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F A E A+ FQ +H L P G+VD T + Sbjct: 122 IFGAATEQALIEFQQKHKLKPDGIVDLITWRMLR 155 >gi|87124202|ref|ZP_01080051.1| hypothetical protein RS9917_11350 [Synechococcus sp. RS9917] gi|86167774|gb|EAQ69032.1| hypothetical protein RS9917_11350 [Synechococcus sp. RS9917] Length = 210 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 71/223 (31%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + A +P + Q +L RI L Q +G++ ++++ L +++G++ R Sbjct: 34 PADRAADPIPPLAQPISEQESLARIPPDLFQTVGVQ-LVLDRTHRQLMVLKDGELTHRFP 92 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 VG V +TP R+ + P WV P + Sbjct: 93 AAVGTVGWETPAGRHRVLEKVSEPIWVHPVTGE--------------------------- 125 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY------SRNNT----------- 321 R G+ N + S I FY + + Sbjct: 126 --------------------RIGQGERNPLGSRWIGFYRDCKGRNGWDGEQYLDIDGCTV 165 Query: 322 -YMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 H TP R + GCVR+ N+ ++ + TP Sbjct: 166 AGFHGTPYRWTVG---RAVSHGCVRLYEENVQEVFDLVRLGTP 205 >gi|113477429|ref|YP_723490.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110168477|gb|ABG53017.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 266 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+ L G + F + AVK FQ G+ G+VD T Sbjct: 202 LAKGDRGSKVKTLQIGLGTMGF--NPGPIDGIFGSKTTGAVKEFQKSKGIKADGIVDQKT 259 Query: 162 LEAMNV 167 +A N Sbjct: 260 WKAFNQ 265 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + G+ V ++ RL G + F A AVK FQ GL +G+VD Sbjct: 108 KKISQGSRGAEVWAVQRRLQARGF--NPGAVDSIFGARTTKAVKAFQESVGLTVTGIVDE 165 Query: 160 STLEAMNVP 168 T ++ P Sbjct: 166 LTWTSLAKP 174 >gi|256004227|ref|ZP_05429210.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 2360] gi|255991817|gb|EEU01916.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 2360] gi|316939606|gb|ADU73640.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 1313] Length = 289 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 17/145 (11%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMM-----ALLRQDPQYLKDNNIHMIDEKGKEVFV 283 I + + +++ + P ++ ++ + + + + G+ V Sbjct: 146 KIFNVTVQQLINANPGINPNALYVGQVICIPVAPSSVRIIVSIAAKTLSLY-RDGRLVKS 204 Query: 284 EEVDWNSPEPPNFI-----FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V P P + + + + +H T P Sbjct: 205 YPVATGKPTTPTPRGTFTIINKQVNPGGPFGTRWMGLSQPH-YGIHGTNNPASIGT---A 260 Query: 339 ETSGCVRV--RNIIDLDVWLLKDTP 361 ++GC+R+ ++ +L + TP Sbjct: 261 ASNGCIRMYNEDVNELFNLVSVGTP 285 >gi|288941087|ref|YP_003443327.1| peptidoglycan-binding domain-containing protein [Allochromatium vinosum DSM 180] gi|288896459|gb|ADC62295.1| Peptidoglycan-binding domain 1 protein [Allochromatium vinosum DSM 180] Length = 604 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 94 WPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + G V+ LR+ + L G + +D +ESA++ FQ GL Sbjct: 505 WQLPPGGSTLIRPGAVGEEVRWLRDLVSRVPGLASLPGPADRYDVTLESALRAFQASKGL 564 Query: 152 DPSGMVDSSTL----EAMNVPVDLRIRQLQVNLMRIKKLL 187 G+ T +A+ + R+ + ++ L Sbjct: 565 TADGVAGPRTFIALYQAIGLDGIPRLDETLATTASMEVLP 604 >gi|281419482|ref|ZP_06250496.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum JW20] gi|281406888|gb|EFB37152.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum JW20] Length = 289 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 17/145 (11%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMM-----ALLRQDPQYLKDNNIHMIDEKGKEVFV 283 I + + +++ + P ++ ++ + + + + G+ V Sbjct: 146 KIFNVTVQQLINANPGINPNALYVGQVICIPVAPSSVRIIVSIAAKTLSLY-RDGRLVKS 204 Query: 284 EEVDWNSPEPPNFI-----FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V P P + + + + +H T P Sbjct: 205 YPVATGKPTTPTPRGTFTIINKQVNPGGPFGTRWMGLSQPH-YGIHGTNNPASIGT---A 260 Query: 339 ETSGCVRV--RNIIDLDVWLLKDTP 361 ++GC+R+ ++ +L + TP Sbjct: 261 ASNGCIRMYNEDVNELFNLVSVGTP 285 >gi|319760542|ref|YP_004124480.1| Protein erfK/srfK [Candidatus Blochmannia vafer str. BVAF] gi|318039256|gb|ADV33806.1| Protein erfK/srfK [Candidatus Blochmannia vafer str. BVAF] Length = 301 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 47/210 (22%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV---ENGKVGLRSTVIVGRVDRQTP-ILHSRINRIM 239 KKL+ + +++NI L +N + + + +G +TP + I Sbjct: 78 KKLILPNTPHKGIIINIAEMRLYYYPNTKNNNIVMVFPISIGTPTHETPSQWITSIKDKK 137 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 +P W IP I+ + + Sbjct: 138 KDPIW-IPTQNIRNEYIKR----------------------------------AEILPLM 162 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL- 356 G N + S + + H + +R T GC+R+ +I L + Sbjct: 163 ILSGPNNPLGSYALYLGNSYAI--HGSNTN--LGIGLR-VTRGCIRLRTEDIKLLYTLVP 217 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 L + I+ + + +++ T + Sbjct: 218 LNTRVQFINEPIKIAIDSNGMQYLEIHTPL 247 >gi|333008320|gb|EGK27794.1| hypothetical protein SFK272_1649 [Shigella flexneri K-272] gi|333019808|gb|EGK39080.1| hypothetical protein SFK227_1287 [Shigella flexneri K-227] Length = 149 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%) Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 G N M I + Y +H T F +R +SGC+R+R+ D+ Sbjct: 1 MPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKT 56 Query: 355 WLLKDTPTWSRYHIEEVVK 373 + TP I +K Sbjct: 57 LFSQVTPGTKVNIINTPIK 75 >gi|254718270|ref|ZP_05180081.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. 83/13] gi|265983231|ref|ZP_06095966.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306838217|ref|ZP_07471070.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. NF 2653] gi|264661823|gb|EEZ32084.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306406697|gb|EFM62923.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. NF 2653] Length = 241 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 80 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPGGEALRYGVGIGKAGFE- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 139 WQGRANVEYKKQWPRWTPPPEMIQR----------------------------------- 163 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + RQ+PG N + + + Y +H +PE + +SGC+R Sbjct: 164 -KPELEKYRNRQEPGPTNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 219 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 220 LMNQDIIDLYNRVQGKAP 237 >gi|222084983|ref|YP_002543512.1| hypothetical protein Arad_1040 [Agrobacterium radiobacter K84] gi|221722431|gb|ACM25587.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 233 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 44/192 (22%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 Q++ R L V+V+ L VE R + VGR D + Sbjct: 52 QVKPQFQRRVVRLVTNEAPGTVIVDTNNKFLYLVEGSNRARRYGIGVGR-DGFGWSGVVK 110 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + R P W P +I ++ + P Y Sbjct: 111 VGRKAEWPGWTPPPEMIARE-AKKGHKLPAY----------------------------- 140 Query: 295 NFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--I 349 Q+ G+ N + + + + +H T +P + +SGC+R+ N + Sbjct: 141 -----QEGGEDNPLGARAMYLYRNGNDTAFRIHGTNQPWSIGLNM---SSGCIRMMNKDV 192 Query: 350 IDLDVWLLKDTP 361 DL + T Sbjct: 193 TDLYERVPIGTK 204 >gi|258655499|ref|YP_003204655.1| cell wall hydrolase/autolysin [Nakamurella multipartita DSM 44233] gi|258558724|gb|ACV81666.1| cell wall hydrolase/autolysin [Nakamurella multipartita DSM 44233] Length = 383 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 18/98 (18%) Query: 86 QDILSRGGWPELPIRPLH-----LGNS-----------SVSVQRLRERLIISGDLDPSKG 129 + +++ G + R L LG+ V L+ RL G + Sbjct: 53 RGLIADGIVGPVTARSLTDARWTLGDRALSYTLSAPMTGDDVMALQTRLSEMGY--NTGR 110 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 F + +V+ FQ GL G+ T + +N Sbjct: 111 PDGIFGPLTDLSVRDFQRHRGLADDGVFGPQTYKELNR 148 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSV---AFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ +V LR+ L L G+ FD V+ A++ FQ R GL G+V Sbjct: 3 LRRGDRGPAVADLRDALASLQLLPSLNGVDRGSVEFDTTVDRAIRDFQQRRGLIADGIVG 62 Query: 159 SSTLEAMN 166 T ++ Sbjct: 63 PVTARSLT 70 >gi|316935742|ref|YP_004110724.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315603456|gb|ADU45991.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 258 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 50/182 (27%), Gaps = 46/182 (25%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 QL L R + ++++ L V G +R V VGR T Sbjct: 78 QLPDRLRRTVVSYQTNQPAGTIVIDTANTYLYYVLGGGRAIRYGVGVGREG-FTWSGVQT 136 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I R P W P +I + P Sbjct: 137 ITRKAEWPDWRPPAEMIARQ---------------------------------------P 157 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDL 352 G N + + + +H T +P F +SGC+R+ N + DL Sbjct: 158 YLPRFMAGGPGNPLGARAMYLG-STTYRIHGTNDPATIGK---FVSSGCIRLTNEDVEDL 213 Query: 353 DV 354 Sbjct: 214 FN 215 >gi|239827637|ref|YP_002950261.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. WCH70] gi|239807930|gb|ACS24995.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. WCH70] Length = 167 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 13/101 (12%) Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD--PG--KINAMASTKIEFY----SRNNTY 322 + + + E + + + N +R+ PG N + + + F Sbjct: 50 YPVATGFNESLTPEGLFMVTVKAENPYYRKQNIPGGAPNNPLGTRWVGFNARGTDGRIYG 109 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 +H T P + + GCVR+ N + L + T Sbjct: 110 IHGTNNPSSIGK---YVSKGCVRMYNRDVEQLYEKIPIGTK 147 >gi|53802744|ref|YP_112601.1| general secretion pathway protein A [Methylococcus capsulatus str. Bath] gi|53756505|gb|AAU90796.1| general secretion pathway protein A [Methylococcus capsulatus str. Bath] Length = 549 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L G SS +V+ LR+ FD +++ V FQ +HGL Sbjct: 470 PAANVTVLRPGESSPAVKWLRQHFPA----KKKPADPQRFDEALKAQVAAFQKQHGLIVD 525 Query: 155 GMVDSSTL 162 G V T Sbjct: 526 GTVGPHTF 533 >gi|291085195|ref|ZP_06352356.2| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Citrobacter youngae ATCC 29220] gi|291072285|gb|EFE10394.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Citrobacter youngae ATCC 29220] Length = 298 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L G + +G+ R+TP + + R P W + ++ Sbjct: 87 IVINVAEMRLYYYPPGTNTVEVLPIGIGQAGRETPRNWVTAVERKQEAPSWTPTPNTRRE 146 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + G N M I Sbjct: 147 -----------------------------------YAARGETLPAFVPAGPDNPMGLYAI 171 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-----I 368 H T F +R + GC+R+RN D +L P +R + Sbjct: 172 YIGRLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDTVPVGTRVQLIDRPV 224 Query: 369 EEVVKTRKTTPVKLATEV 386 + V+ + +++ + Sbjct: 225 KYSVEPDGSRWIEVHEPL 242 >gi|115380489|ref|ZP_01467464.1| ErfK/YbiS/YcfS/YnhG family [Stigmatella aurantiaca DW4/3-1] gi|115362504|gb|EAU61764.1| ErfK/YbiS/YcfS/YnhG family [Stigmatella aurantiaca DW4/3-1] Length = 278 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 75/264 (28%), Gaps = 66/264 (25%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-----GLDP 153 + G V+ L+E L+ G G AF AV+ FQ+ + Sbjct: 34 KGTIGPGARGTGVRALQEALLAMGF-SLPGGADGAFGKQSAKAVRNFQVHAQSAFPNVKA 92 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +G VD++TL+A++ L N+P +G Sbjct: 93 TGGVDAATLQALDA-------------------LAPAPKQTGQSQNLPVPR----YDGTP 129 Query: 214 GLRSTVIVGRVDRQTPILHS--RINRIMFNPYWV--IPRSIIQKDMMALLRQDPQYLKDN 269 V+V + + +T + + ++ I N P K + L + Y Sbjct: 130 V---RVVVVKNEHRTFLFDAQGQLQGIFGNAVGANSSPTDKGLKQVSGKLGRAEAYALGQ 186 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + G +D + + + +H T P Sbjct: 187 KL----WGGPVYGPRLIDLSWADGSR-----------------------SGEELHGTNAP 219 Query: 330 ILFNNVVRFETSGCVRVRNIIDLD 353 + GC+R N + Sbjct: 220 DKLGED---VSHGCIRHGNTDIIA 240 >gi|295703756|ref|YP_003596831.1| endopeptidase LytF [Bacillus megaterium DSM 319] gi|294801415|gb|ADF38481.1| endopeptidase LytF (cell wall hydrolase) [Bacillus megaterium DSM 319] Length = 303 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 YQ ++ L G +S V+++++ L G + + F ++ V Sbjct: 88 YQALIGNSTSTVTNGTLLKYGMTSNEVEKVQQLLKEKGYF--NATPTGYFGTVTQTVVMN 145 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ HGL G+V +T A+ Sbjct: 146 FQRDHGLAVDGIVGPATSNAL 166 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V+ L++ L G + F + + +V FQ H L G Sbjct: 24 ALGDKLLKEGMTDPDVKELQDVLRQKGIFS--ATSTGYFGSITKDSVLSFQRSHSLTADG 81 Query: 156 MVDSSTLEAMNVP 168 +V S+T +A+ Sbjct: 82 IVGSNTYQALIGN 94 >gi|229824253|ref|ZP_04450322.1| hypothetical protein GCWU000282_01557 [Catonella morbi ATCC 51271] gi|229786607|gb|EEP22721.1| hypothetical protein GCWU000282_01557 [Catonella morbi ATCC 51271] Length = 474 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 15/179 (8%) Query: 6 KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINES-------YHSIVNDRFDNFLAR 58 K+ Y+ L G S I A+ + E V + + Sbjct: 282 KLYGDFKITEPYVFLVDGGSASASEILAAAIKENTKHDLVGEKTFGKGTVQQVLN--QSD 339 Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRLR 115 + + ++ + ++ I + + L G S+ V+ L Sbjct: 340 LGELKLTIAKWLTPKGDWIHKQGIEPTVAVEQEPVAKAVSLSYDDTLAKGQSNDGVKNLA 399 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 L G + FD +E+AVK FQ GL G V T +A+N ++ Sbjct: 400 LILKALGY---ELESTEYFDDKMEAAVKAFQKDKGLTEDGQVTGKTADALNEATREYLK 455 >gi|307945563|ref|ZP_07660899.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] gi|307771436|gb|EFO30661.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] Length = 173 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 48/177 (27%), Gaps = 44/177 (24%) Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 + + + +++ L V G+ +R V VGR + ++I Sbjct: 27 QAAEVVGFQDHRFRPGTIVIRNSERRLYLVLRGQRAIRYKVAVGRPAKA-WTGQAQIIGK 85 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 P W +R+D +L Sbjct: 86 HVRPDWSP---------SPEVRRDFPHLPR-----------------------------L 107 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + N M + + N +H T P R + GC+R+ N D+ Sbjct: 108 IRGGAPNNPMGIAAMTLSNGN-YAIHGTNRPGSIG---RAVSYGCIRMAN-HDIADL 159 >gi|291541737|emb|CBL14847.1| ABC-type Fe3+-hydroxamate transport system, periplasmic component [Ruminococcus bromii L2-63] Length = 420 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L + + +V+ ++ RL G + ++ + AVK FQ +GL +G D++ Sbjct: 347 SLKLEDENDTVKAMQLRLYNIGYIADKDNVTGYYGEVTAEAVKKFQKNNGLKETGTADNA 406 Query: 161 TLEAMNVPVDLRIR 174 TL + + + Sbjct: 407 TLVLLFDSSAKKAK 420 >gi|149180623|ref|ZP_01859127.1| hypothetical protein BSG1_16740 [Bacillus sp. SG-1] gi|148851776|gb|EDL65922.1| hypothetical protein BSG1_16740 [Bacillus sp. SG-1] Length = 165 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 20/173 (11%) Query: 194 RYVLVNIPAASLE-AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 Y P +L E+ +V R V + IL + + + P P I Sbjct: 1 MYQHSVKPGETLWSISEDYRVSFRELVRTNNITNPNLIL---VGQKITIPGLPDPNQIPL 57 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 ++ ++ L+ N + GK + V P Sbjct: 58 SIHVSTSQRKLT-LQRNGTVVKTYPIAVGKMLSATPVGQYVIINK------APNPGGPFG 110 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + + ++ +H T P + GC+R+ N + +L + T Sbjct: 111 TMWMSLSKKH-YGIHGTNNPASIGK---AVSKGCIRMYNSDVEELARTIPIGT 159 >gi|289823791|ref|ZP_06543403.1| hypothetical protein Salmonellentericaenterica_00937 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 309 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 T H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAT--HGTNA--NFGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|282900449|ref|ZP_06308398.1| Peptidoglycan-binding domain protein 1 [Cylindrospermopsis raciborskii CS-505] gi|281194642|gb|EFA69590.1| Peptidoglycan-binding domain protein 1 [Cylindrospermopsis raciborskii CS-505] Length = 232 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LGN+ V +L+ L G + F +E AVK Q+R+GL G+V T Sbjct: 163 LRLGNTGAEVTKLQRLLRALGFFPS--PIDGKFSVTLERAVKAAQLRYGLTADGVVGGQT 220 Query: 162 LEAMNV 167 + Sbjct: 221 WDVFIQ 226 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 2/85 (2%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y I G + L +G+ SV L+ L + G + + AV Sbjct: 6 YTPIAQVTGVGSINRPMLKIGSQGESVSELQATLALLGFYS--GPVDGVYRDSTAKAVSQ 63 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPV 169 F+ GL P G+VD+ T + + V Sbjct: 64 FKQVVGLAPDGIVDTITWQKLFPSV 88 >gi|125975485|ref|YP_001039395.1| ErfK/YbiS/YcfS/YnhG [Clostridium thermocellum ATCC 27405] gi|125715710|gb|ABN54202.1| ErfK/YbiS/YcfS/YnhG [Clostridium thermocellum ATCC 27405] Length = 289 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 17/145 (11%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMM-----ALLRQDPQYLKDNNIHMIDEKGKEVFV 283 I + + +++ + P ++ ++ + + + + G+ V Sbjct: 146 KIFNVTVQQLINANPGINPNALYVGQVICIPVAPSSVRIIVSIAAKTLSLYR-DGRLVKS 204 Query: 284 EEVDWNSPEPPNFI-----FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V P P + + + + +H T P Sbjct: 205 YPVATGKPTTPTPRGTFTIINKQVNPGGPFGTRWMGLSQPH-YGIHGTNNPASIGT---A 260 Query: 339 ETSGCVRV--RNIIDLDVWLLKDTP 361 ++GC+R+ ++ +L + TP Sbjct: 261 ASNGCIRMYNEDVNELFNLVSVGTP 285 >gi|295704058|ref|YP_003597133.1| L-alanyl-D-glutamate peptidase [Bacillus megaterium DSM 319] gi|294801717|gb|ADF38783.1| L-alanyl-D-glutamate peptidase [Bacillus megaterium DSM 319] Length = 231 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ + G+ VQ ++ LI G G F + AVK FQ L Sbjct: 153 PKASSMLIKYGDRGNHVQLIQRMLIHLGY-SLFGGADGIFGSSTFKAVKAFQQALYLQVD 211 Query: 155 GMVDSSTLEAM 165 G+V TLE + Sbjct: 212 GIVGPKTLEKL 222 >gi|288555862|ref|YP_003427797.1| hypothetical protein BpOF4_14280 [Bacillus pseudofirmus OF4] gi|288547022|gb|ADC50905.1| Uncharacterized erfK/srfK family protein, probably secreted [Bacillus pseudofirmus OF4] Length = 164 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 59/177 (33%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G Y+++NI L + +G+V V G+ +TP + Sbjct: 20 LGDPYLIINIETNELAFIYDGQVQRVYRVASGKEGAETPEGEFTVVVK------------ 67 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++P Y +++ ++ D N + + Sbjct: 68 ---------AENPYY-------------RKLDIKGGD----------------PHNPLGT 89 Query: 311 TKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 I F +H T P + T+GCVR+ N + L + T Sbjct: 90 RWIGFDAEGTDGRIYGIHGTNRPDSIGS---HVTAGCVRLPNEEVEQLFDQIPLGTK 143 >gi|220929601|ref|YP_002506510.1| peptidoglycan-binding protein [Clostridium cellulolyticum H10] gi|219999929|gb|ACL76530.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulolyticum H10] Length = 549 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 20/147 (13%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI-PIISKETIAQTEKAI-- 82 L I V D + ++ +D D P+ + Q + + Sbjct: 102 LKGDIITLGVKDITVTVIQKRLME----LDYLEIDEPTDEFGEPLQFAIELFQRKNKLPI 157 Query: 83 ------AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 Y+ +LS + L VQ+L+ERL G + ++ F + Sbjct: 158 TGEVDAKTYELLLSEDA----KAYTVSLEAEGTDVQQLQERLYELGYI---NKVTGYFGS 210 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLE 163 ++AVK FQ R+GL G V T E Sbjct: 211 DTDTAVKEFQKRNGLYDDGNVGKQTRE 237 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+ + + + ++RL G L + S ++ AVK FQ +GL G + T + Sbjct: 251 LGDENGEILQYKQRLYELGYL--TAKPSGKYNNDTVLAVKRFQENNGLISDGYIGPVTKD 308 Query: 164 -AMNVPVDLRIRQLQVNLMRIK 184 M+ + N + Sbjct: 309 LLMSADATENALDIGDNGEDVT 330 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G++ V +++ L+ G L G++ F + +AV FQ R+GL G V S Sbjct: 319 ALDIGDNGEDVTKVQTYLMKLGYLK---GVTGYFGSDTHNAVLKFQSRNGLGQDGKVGSQ 375 Query: 161 TLEAMNVPVDLRIR 174 T+ + + Sbjct: 376 TIAKLLSSDARKWT 389 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Query: 95 PELPIRPLH-----LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 ++P+ PL LG ++V +++RL+ L+ + F ++ A++LFQ ++ Sbjct: 95 GKVPLNPLKGDIITLGVKDITVTVIQKRLMELDYLEIDEPTDE-FGEPLQFAIELFQRKN 153 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 L +G VD+ T + + D + + + Sbjct: 154 KLPITGEVDAKTY-ELLLSEDAKAYTVSLEAE 184 >gi|21243340|ref|NP_642922.1| carboxypeptidase [Xanthomonas axonopodis pv. citri str. 306] gi|21108884|gb|AAM37458.1| carboxypeptidase [Xanthomonas axonopodis pv. citri str. 306] Length = 431 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 11/120 (9%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 L G V++L+ +L G + F + AV+ FQ HGL G Sbjct: 211 DGKLEQGERGEQVKQLQGQLAQLGAVGRDGKPLRADGDFGGNTKYAVEQFQREHGLQIDG 270 Query: 156 MVDSSTLEAM--------NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 + T A+ + LL + N + LEA Sbjct: 271 VAGQQTQAALAKVLAQATPKQPEHTAAPAAPAQAASSPLLSDPRHPDNAMYNGAVSKLEA 330 >gi|326776721|ref|ZP_08235986.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] gi|326657054|gb|EGE41900.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] Length = 232 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G + V +L+ R ++G + + ++ +AVK FQ +GL G+ Sbjct: 26 TRTLKAGATGNDVTQLQIR--VAGYPGYNSVLAIDGSYGPATTAAVKRFQAAYGLAADGV 83 Query: 157 VDSSTLEAM 165 +T + Sbjct: 84 AGPATQAKL 92 >gi|182436095|ref|YP_001823814.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464611|dbj|BAG19131.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G + V +L+ R ++G + + ++ +AVK FQ +GL G+ Sbjct: 39 TRTLKAGATGNDVTQLQIR--VAGYPGYNSVLAIDGSYGPATTAAVKRFQAAYGLAADGV 96 Query: 157 VDSSTLEAM 165 +T + Sbjct: 97 AGPATQAKL 105 >gi|307267035|ref|ZP_07548550.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917960|gb|EFN48219.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 77 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +L R L+ G V +L+ L G + F ++AV FQ +GL Sbjct: 4 QQLGSRLLYEGTVGYDVLQLQMILQSLGY--DPGPIDGIFGPRTKNAVMKFQRDNGLKVD 61 Query: 155 GMVDSSTLEAMNV 167 G+V T+ +N+ Sbjct: 62 GIVGPETMRVINM 74 >gi|91978583|ref|YP_571242.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91685039|gb|ABE41341.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 263 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 49/205 (23%) Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR--YVLVNIPAA 203 Q RH L P +D + M + + + K+L++ G + ++V+ P Sbjct: 87 QRRHYLPP---MDPQAPQVMRQQEAIDPARPAFDPKFEKQLVDYNGGEKPGTIVVDTPNK 143 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L V+ +R + VGR T I+ P W P K+M+A P Sbjct: 144 FLYLVQGDGRAMRYGIGVGRPG-FTWSGVKTISAKREWPSWTPP-----KEMLARRPDLP 197 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +Y++ G N + + + S + Sbjct: 198 RYME----------------------------------GGPDNPLGARAMYLGSS-LYRI 222 Query: 324 HDTPEPILFNNVVRFETSGCVRVRN 348 H + EP +SGC+R+RN Sbjct: 223 HGSNEPWTIGTN---VSSGCIRMRN 244 >gi|300853500|ref|YP_003778484.1| spore cortex-lytic enzyme [Clostridium ljungdahlii DSM 13528] gi|300433615|gb|ADK13382.1| spore cortex-lytic enzyme precursor [Clostridium ljungdahlii DSM 13528] Length = 229 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V +++++L G + + + +AVK FQ ++GL G+V +TL A Sbjct: 44 GSRGNMVIQIQQKLRSWGYY--NGSVDGVYGYQTYTAVKYFQSKNGLKSDGIVGDATLAA 101 Query: 165 MNVP 168 + + Sbjct: 102 LAIN 105 >gi|302392565|ref|YP_003828385.1| peptidase M23 [Acetohalobium arabaticum DSM 5501] gi|302204642|gb|ADL13320.1| Peptidase M23 [Acetohalobium arabaticum DSM 5501] Length = 354 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V+ L++RL G S + F + VK FQ ++ L G+V + T Sbjct: 35 LEVGMRGSDVKLLQQRLNNLGY---SIEVDGIFGKETKKIVKKFQEKNDLFSDGIVGTRT 91 Query: 162 LEAMN 166 + + Sbjct: 92 IYYLQ 96 >gi|163852067|ref|YP_001640110.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163663672|gb|ABY31039.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 248 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 51/199 (25%), Gaps = 46/199 (23%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L + + + + R ++V+ L ++ Sbjct: 75 LPTANAALPADIPGAPADPLASTVPQMTAIPRDTVPYSGPYAPGTIVVSTTERRLYLIQP 134 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G LR V VGR T + P W P ++++ Sbjct: 135 GGEALRYGVGVGRPG-FTWGGTQTVTMKREWPDWRPPSEMLRRR---------------- 177 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEP 329 P+ G N + + + + Y +H + EP Sbjct: 178 -----------------------PDLPRYMKGGIENPLGARAMYLGN--TIYRIHGSNEP 212 Query: 330 ILFNNVVRFETSGCVRVRN 348 +SGC+R+ N Sbjct: 213 ETIGT---AVSSGCIRMTN 228 >gi|114706198|ref|ZP_01439101.1| ErfK/YbiS/YcfS/YnhG [Fulvimarina pelagi HTCC2506] gi|114539044|gb|EAU42165.1| ErfK/YbiS/YcfS/YnhG [Fulvimarina pelagi HTCC2506] Length = 173 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 46/175 (26%), Gaps = 46/175 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + ++V L V + + VG+ Q S ++R Sbjct: 31 RPEISFQADADPGTIVVKTAERKLYLVTGPGKAMVYDIAVGKPSEQ-WFGKSWVSRKRRA 89 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P WV S+ ++ P Sbjct: 90 PTWVPTPSMRER---------------------------------------NPRLPQSIG 110 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDV 354 PG N + I +H T P + ++GC R+RN DL Sbjct: 111 PGPKNPLGERAINLGWG-AYRIHGTNNPRSIGS---AASAGCFRMRNADVKDLFE 161 >gi|331269554|ref|YP_004396046.1| glycosyl hydrolase, family 25 [Clostridium botulinum BKT015925] gi|329126104|gb|AEB76049.1| glycosyl hydrolase, family 25 [Clostridium botulinum BKT015925] Length = 323 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + ++ERL+ G G F E AVK Q +GL G+V T Sbjct: 258 RRGAKGNITKIIQERLLAKGYRIGIYGADGIFGPETERAVKNLQKNYGLQIDGIVGKETW 317 Query: 163 EAM 165 +A+ Sbjct: 318 QAL 320 >gi|182417949|ref|ZP_02949259.1| spore cortex-lytic enzyme pre-pro-form [Clostridium butyricum 5521] gi|237669439|ref|ZP_04529421.1| peptidoglycan-binding domain 1 protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378258|gb|EDT75792.1| spore cortex-lytic enzyme pre-pro-form [Clostridium butyricum 5521] gi|237655326|gb|EEP52884.1| peptidoglycan-binding domain 1 protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 575 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P + L LG+S V+ ++ +L I + ++ F+ ++AVK FQ L Sbjct: 307 PGKALKLGDSGSDVKVIQTQLNRIRKNYPAIPQINNVNGEFNDATKNAVKEFQKIFNLTA 366 Query: 154 SGMVDSSTLEAMNV 167 G+V T ++ Sbjct: 367 DGIVGKKTWYKISQ 380 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISG---DLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 E+P L LG+ +V+ L+ LI G D ++ FD E++VK FQ LD Sbjct: 403 EIPTEVLKLGSQGTNVKILQYLLICIGAFYDSILPVKITGKFDTDTENSVKSFQQEFNLD 462 Query: 153 PSGMVDSSTLEAM 165 G+V T + Sbjct: 463 NDGIVGKKTWSKL 475 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERL--IISGD-LDPSKGLSVAFDAYVESAVKL 144 + + G + + P + G VQ+++ L I S P + F + AV Sbjct: 487 LDASGKFIKYPGYLIKKGKRGEDVQQIQVWLNTIHSKYPFIPEVDVDGIFGSGTREAVMD 546 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ + L G+V T + + Sbjct: 547 FQRWNDLVEDGIVGKLTWDKL 567 >gi|302865629|ref|YP_003834266.1| peptidase M15A [Micromonospora aurantiaca ATCC 27029] gi|302568488|gb|ADL44690.1| Peptidase M15A [Micromonospora aurantiaca ATCC 27029] Length = 259 Score = 62.7 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V++L+ R+ + + +AVK FQ +GL G+ T Sbjct: 43 LSQGQSGSDVRQLQIRVAGWAAYGGIVRVDGVYGPETAAAVKRFQAAYGLRADGVAGPKT 102 Query: 162 LEAM 165 + Sbjct: 103 FAKI 106 >gi|188991092|ref|YP_001903102.1| putative carboxpeptidase [Xanthomonas campestris pv. campestris str. B100] gi|167732852|emb|CAP51046.1| putative carboxpeptidase [Xanthomonas campestris pv. campestris] Length = 431 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 35/121 (28%), Gaps = 11/121 (9%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPS 154 L G V++L+ +L G + F + AV+ FQ HGL Sbjct: 210 TDGKLEQGERGEQVKQLQGQLAQLGAVGRDGKPLKPDGDFGGNTKYAVEQFQREHGLQID 269 Query: 155 GMVDSSTLEAM--------NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 G+ T A+ D LL + N + LE Sbjct: 270 GVAGQQTQAALAKALTQAAPKQPDHTAAPAAPAQAASSPLLSDPRHPDNAMYNGAVSKLE 329 Query: 207 A 207 A Sbjct: 330 A 330 >gi|295704404|ref|YP_003597479.1| autolytic lysozyme [Bacillus megaterium DSM 319] gi|294802063|gb|ADF39129.1| autolytic lysozyme [Bacillus megaterium DSM 319] Length = 298 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + V+++++ L+ G P G + + +AVK FQ R+GL G+ + TL Sbjct: 227 GDRGLGVKQIQQNLLALGFSLPKFGADGFYGDELIAAVKKFQNRYGLFSDGIAGADTL 284 >gi|294499079|ref|YP_003562779.1| autolytic lysozyme [Bacillus megaterium QM B1551] gi|294349016|gb|ADE69345.1| autolytic lysozyme [Bacillus megaterium QM B1551] Length = 298 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + V+++++ L+ G P G + + +AVK FQ R+GL G+ + TL Sbjct: 227 GDRGLGVKQIQQNLLALGFSLPKFGADGFYGDELIAAVKKFQNRYGLFSDGIAGADTL 284 >gi|302562363|ref|ZP_07314705.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302479981|gb|EFL43074.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 112 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 96 ELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P L G+S V L+ERL+ D+ S +DA + +AV FQ+ +G+ Sbjct: 30 RVPAEEGFLREGDSGPEVAELQERLLRIPDVYRSGAPDGRYDATLSAAVARFQLWYGVRG 89 Query: 154 S--GMVDSSTLEAMN 166 G+ T A+ Sbjct: 90 DETGVYGDDTRFALE 104 >gi|205373921|ref|ZP_03226722.1| hypothetical protein Bcoam_12030 [Bacillus coahuilensis m4-4] Length = 168 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 61/195 (31%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G ++++N L + ++ V GR D TP + Sbjct: 24 PGDPFIIINKTTNELAFFQKNELQHIYQVGTGRTDDLTPEGLFTVTVK------------ 71 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK-INAMA 309 ++P Y +++ + G N + Sbjct: 72 ---------AKNPYY-------------RKLDI-----------------PGGDSNNPLG 92 Query: 310 STKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 + I F +H T + ++GCVR+ N L P ++ Sbjct: 93 TRWIGFDAEETDGRIYGIHGTNRAESIGY---YVSNGCVRMTNPS--VEELFDRIPLGTK 147 Query: 366 YHIEEVVKTRKTTPV 380 I T + + Sbjct: 148 VLIINKTATFEEIAI 162 >gi|29141352|ref|NP_804694.1| hypothetical protein t0859 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213426663|ref|ZP_03359413.1| hypothetical protein SentesTyphi_14238 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213579910|ref|ZP_03361736.1| hypothetical protein SentesTyph_01353 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609905|ref|ZP_03369731.1| hypothetical protein SentesTyp_05022 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648681|ref|ZP_03378734.1| hypothetical protein SentesTy_16206 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864915|ref|ZP_03387034.1| hypothetical protein SentesT_34134 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|29136979|gb|AAO68543.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 309 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 T H T F +R + GC+R+RN D +L P +R I Sbjct: 183 YIGRLYAT--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 230 >gi|303229630|ref|ZP_07316418.1| 3D domain protein [Veillonella atypica ACS-134-V-Col7a] gi|302515755|gb|EFL57709.1| 3D domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 201 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 32/189 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G VQ+++ L+ G L+ S F E AV+ FQ GL G V Sbjct: 23 AKSVDKGQRGHHVQKIQTMLVHQGYLNDSA--DGIFGHNTELAVRKFQKAKGLAVDGRVG 80 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 ++T+ A+ + + +P + + + Sbjct: 81 TATMSALEK-------------EETRF---GDSAISRSHNGVPNKYVRVMTMHASA--YS 122 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 T I+ +IP +++ + D+ G Sbjct: 123 AQDPGNSNYTATGSRLKKGIVSVDPRIIPL------------GTKMFIEGYGYAVADDVG 170 Query: 279 KEVFVEEVD 287 + +D Sbjct: 171 GAIKGSRID 179 >gi|288960265|ref|YP_003450605.1| hypothetical protein AZL_a05300 [Azospirillum sp. B510] gi|288912573|dbj|BAI74061.1| hypothetical protein AZL_a05300 [Azospirillum sp. B510] Length = 371 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 47/192 (24%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 +++ L + V +GR P+ S I R +P W + + Sbjct: 61 ISLADRRLYLTGSDGATRSFPVAIGRPGVPIPVGGSSIRRKRRDPTWRPTANQRR----- 115 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + P PG N + ++ Sbjct: 116 ----------------------------------DNPALPRAVPPGPHNPLGKFALDLGW 141 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-- 375 +H T +P R + GC R+ D++ + E + Sbjct: 142 P-AIAIHGTNDPESIG--TRA-SGGCFRML-PADIETVFAATEVGTPVRVVRESLGANTI 196 Query: 376 -KTTPVKLATEV 386 T V +A V Sbjct: 197 ADTIAVNVAANV 208 >gi|20807964|ref|NP_623135.1| peptidoglycan-binding domain-containing protein [Thermoanaerobacter tengcongensis MB4] gi|20516536|gb|AAM24739.1| putative peptidoglycan-binding domain-containing protein [Thermoanaerobacter tengcongensis MB4] Length = 77 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 EL R L+ G + V L+ L G + F + AV FQ +GL Sbjct: 4 QELGSRLLYEGLAGYDVLELQMILQSLGY--DPGPIDGIFGPRTKKAVMKFQRDNGLKVD 61 Query: 155 GMVDSSTLEAMNV 167 G+V T++ + + Sbjct: 62 GIVGPETMKVIRM 74 >gi|154816022|emb|CAO85704.1| putative spore-cortex-lytic enzyme precursor [Clostridium sp.] Length = 198 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V ++++L G D S + + AVK FQ ++GL+ G+ + TL A Sbjct: 92 GSKGGGVSEIQKKLKNWGYYDGS--VDGIYGYKTFLAVKKFQGKNGLNVDGVAGNKTLAA 149 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V N I L G Sbjct: 150 LGINVAQAQGSNTSNNRDINLLARLINGE 178 >gi|325289079|ref|YP_004265260.1| gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I [Syntrophobotulus glycolicus DSM 8271] gi|324964480|gb|ADY55259.1| gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I [Syntrophobotulus glycolicus DSM 8271] Length = 424 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V ++ L G + F E AV+ FQ GL G+V T Sbjct: 2 LKVGLRGNDVAEVQALLKQRGF--DPGPVDGIFGTKTEQAVRRFQNARGLSADGIVGPLT 59 Query: 162 LEAMNVPVDLRIRQLQ 177 +A+ +Q Sbjct: 60 YQALQATSAPSTYTVQ 75 >gi|282900696|ref|ZP_06308638.1| Peptidoglycan-binding domain protein 1 [Cylindrospermopsis raciborskii CS-505] gi|281194496|gb|EFA69451.1| Peptidoglycan-binding domain protein 1 [Cylindrospermopsis raciborskii CS-505] Length = 208 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S H ++ + A P + K +D L+ Sbjct: 78 TPSKRLIAEQTPAHIRLSYGYKWQQASKRSNNRQLRPQFQLADRSNLPKPKFPSRDYLAY 137 Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P++P L G+S +S++ L+ LI +G + + F A E+A+K FQ + L Sbjct: 138 NR-PQMP--TLRFGDSGLSIRVLQRLLISNGY---NVRVDGVFGALTETAIKAFQSQRNL 191 Query: 152 DPSGMVDSSTLEAM 165 G+V T + Sbjct: 192 SVDGIVGPKTWSQL 205 >gi|254695317|ref|ZP_05157145.1| hypothetical protein Babob3T_11855 [Brucella abortus bv. 3 str. Tulya] gi|261215687|ref|ZP_05929968.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|260917294|gb|EEX84155.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] Length = 244 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 40/156 (25%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++++ + L V+ R V VG+ + RI+R P W P +I Sbjct: 110 PDTIVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIA 168 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ + R D G N + + Sbjct: 169 RE-----------------------------------RKKGRFLPARMDGGINNPLGARA 193 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T +P + +SGC+R+RN Sbjct: 194 LYLG-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 225 >gi|225175303|ref|ZP_03729298.1| carboxyl-terminal protease [Dethiobacter alkaliphilus AHT 1] gi|225169055|gb|EEG77854.1| carboxyl-terminal protease [Dethiobacter alkaliphilus AHT 1] Length = 469 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 22/124 (17%) Query: 78 TEKAIAFY-----QDILSRGGWPELP--------------IRPLHLGNSSVSVQRLRERL 118 +A Y +DI G P++ R L G+ ++VQ L++ L Sbjct: 340 LRYTVAKYQTPNGRDINEVGLEPDVEVELPDELRVLFHRVARDLKPGDEDMNVQFLQQML 399 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 + + +D+ E AV+ FQ HGL+ +G ++ T +N +D + + Sbjct: 400 KSLDY---NVNDTGVYDSATERAVRSFQNEHGLNATGELNLETRTQLNEEIDRLLEENDT 456 Query: 179 NLMR 182 + + Sbjct: 457 QMQK 460 >gi|315502176|ref|YP_004081063.1| peptidase m15a [Micromonospora sp. L5] gi|315408795|gb|ADU06912.1| Peptidase M15A [Micromonospora sp. L5] Length = 259 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V++L+ R+ + + +AVK FQ +GL G+ T Sbjct: 43 LSQGQSGSDVRQLQIRVAGWAAYGGIVRVDGVYGPETAAAVKRFQAAYGLRADGVAGPKT 102 Query: 162 LEAM 165 + Sbjct: 103 FAKI 106 >gi|160945978|ref|ZP_02093204.1| hypothetical protein FAEPRAM212_03511 [Faecalibacterium prausnitzii M21/2] gi|158443709|gb|EDP20714.1| hypothetical protein FAEPRAM212_03511 [Faecalibacterium prausnitzii M21/2] Length = 156 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + G P LH G+S +V+ ++++L G + A +AV+ F Sbjct: 79 RYTAKHGLKVPYPGIVLHTGSSGGTVRLVQQKLNSLG---ERLKDDGKYGAATAAAVQRF 135 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q R+GL G V +T E M Sbjct: 136 QRRNGLPADGSVGCATWEKM 155 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S V ++ L D + F A + AV+ FQ+++ ++ G V Sbjct: 10 LQRGSSGPDVALVQTWLNGVRDACTWYDALKADGKFGASTQRAVQEFQLKNKMNMDGKVG 69 Query: 159 SSTLEAM 165 +T + Sbjct: 70 QNTWNVL 76 >gi|148251944|ref|YP_001236529.1| hypothetical protein BBta_0331 [Bradyrhizobium sp. BTAi1] gi|146404117|gb|ABQ32623.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 178 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 45/165 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++V L V +G+ +R V VG+ RQ ++I+ P W Sbjct: 40 MAGDFSPGTIVVKTGERKLYLVLDGRHAMRYPVGVGKAGRQ-WAGTTKIDGKYKYPAWAP 98 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KI 305 P + + + PN G Sbjct: 99 PAEVKR---------------------------------------DKPNLPDVIAGGSPH 119 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 N M + + +H T P F + GC+R+ N Sbjct: 120 NPMGVAAMTLAGGD-YAIHGTNVPGSVG---GFVSYGCIRMLNAD 160 >gi|325920413|ref|ZP_08182342.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325549103|gb|EGD20028.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 466 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 8/117 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 L G SV++L+ +L G F + AV+ FQ HGL G Sbjct: 249 DGRLEQGERGQSVKQLQSQLAQLGATGRDGKPLQADGDFGGNTKHAVEHFQREHGLQVDG 308 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKK-----LLEQKMGLRYVLVNIPAASLEA 207 +V T A+ + + LL + N + LEA Sbjct: 309 VVGQRTQAALGQALSQHTAKHAEQSAPQAAPVGIPLLSDPRHPDNAIYNGAVSKLEA 365 >gi|302536111|ref|ZP_07288453.1| predicted protein [Streptomyces sp. C] gi|302445006|gb|EFL16822.1| predicted protein [Streptomyces sp. C] Length = 387 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 3/133 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++L+ LI G F A +AVK +Q H +G V Sbjct: 123 RALRAGDKGEDVRQLKRNLIALGYGTGLDAQDGTFTAGTAAAVKRWQKAHKAPETGEVAR 182 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + + P ++ + + + +V L+A + G V Sbjct: 183 EDIAFASGPQRVKRTEAALGDEPGPGKPVLTVTGTERIVR---FQLDAAKAGSAKTGDKV 239 Query: 220 IVGRVDRQTPILH 232 V + Sbjct: 240 TVRLPGGGSAAGK 252 >gi|305681688|ref|ZP_07404494.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium matruchotii ATCC 14266] gi|305658848|gb|EFM48349.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium matruchotii ATCC 14266] Length = 392 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 10/78 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL----------SVAFDAYVESAVKLFQMR 148 L +G++S V +R+ L G L FD +E+A++ FQ Sbjct: 2 SDVLKVGDNSPRVAEVRKSLARLGLLPNYNESGNPDHAIYNADTLFDDELEAALRGFQQA 61 Query: 149 HGLDPSGMVDSSTLEAMN 166 G+ SG ++ TL + Sbjct: 62 RGIIASGEINEMTLRVLR 79 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 20/158 (12%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARV--DMGIDSDIPIISKETIAQTEKAIAFY 85 + + E S+ + + + + + Sbjct: 2 SDVLKVGDNSPRVAEVRKSLARLGLLPNYNESGNPDHAIYNADTLFDDELEAALRGFQQA 61 Query: 86 QDILSRGGWPELPIRPLH-----LG-----------NSSVSVQRLRERLIISGDLDPSKG 129 + I++ G E+ +R L LG S V +L+++L G Sbjct: 62 RGIIASGEINEMTLRVLREASYELGARVLNYQPHNEMSGDDVVQLQQQLQELGFYS--DR 119 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + F + A+ +QM +GL+ G+ +T+ ++N Sbjct: 120 IDGHFGEHTYRALLKYQMNYGLNMDGICGPNTIRSLNR 157 >gi|330830167|ref|YP_004393119.1| Gp28-like protein [Aeromonas veronii B565] gi|328805303|gb|AEB50502.1| Gp28-like protein [Aeromonas veronii B565] Length = 273 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 6/101 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ +V L+ RL +G + F E A+ FQ + + G Sbjct: 2 SLKKGDTGTAVADLQRRLTAAGY---PLAVDGWFGEATEQALIAFQRDYMIAAIGQAGPR 58 Query: 161 TLEAMNVPVDLRIRQLQVN-LMRIKKLLEQKMGLRYVLVNI 200 TL A+ R QL +N + LL + + + Sbjct: 59 TLAALLGS--ERGNQLTINHMQAGADLLAVPLATMATVAQV 97 >gi|261417796|ref|YP_003251478.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y412MC61] gi|319767392|ref|YP_004132893.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y412MC52] gi|261374253|gb|ACX76996.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y412MC61] gi|317112258|gb|ADU94750.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y412MC52] Length = 168 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 11/109 (10%) Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD--PG-- 303 +I + L + + ++ E + + + + +R+ PG Sbjct: 27 PLVIVNKAINKLALVRDGRIEAVYPVATGVNADLTPEGMFTVTVKAKHPYYRKKNIPGGA 86 Query: 304 KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N + + I F +H T P + + GCVR+ N Sbjct: 87 PNNPLGTRWIGFNARGTDGRTYGIHGTNNPASIG---GYVSQGCVRMHN 132 >gi|297529480|ref|YP_003670755.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. C56-T3] gi|297252732|gb|ADI26178.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. C56-T3] Length = 168 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 11/109 (10%) Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD--PG-- 303 +I + L + + ++ E + + + + +R+ PG Sbjct: 27 PLVIVNKAINKLALVRDGRIEAVYPVATGVNTDLTPEGMFTVTVKAKHPYYRKKNIPGGA 86 Query: 304 KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N + + I F +H T P + + GCVR+ N Sbjct: 87 PNNPLGTRWIGFNARGTDGRTYGIHGTNNPASIG---GYVSQGCVRMHN 132 >gi|15964533|ref|NP_384886.1| putative signal peptide protein [Sinorhizobium meliloti 1021] gi|307308481|ref|ZP_07588185.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|15073710|emb|CAC45352.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306901084|gb|EFN31692.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 231 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 42/172 (24%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R K ++V+ + L ++ R + VGR D ++ R Sbjct: 55 YWRTKVRFRTDEAPGTIIVDTNSKYLYYIDGSNRATRYGIGVGR-DGFGWSGVVKVGRKA 113 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P + ++ + Sbjct: 114 EWPSWTPPAEMRVRE-----------------------------------RAKGRILPIT 138 Query: 300 QDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 Q G N + + + R+ + +H T +P + +SGC+R+ N Sbjct: 139 QPGGIDNPLGARALYLYKGGRDTIFRIHGTNQPWTIGQNM---SSGCIRMMN 187 >gi|313885142|ref|ZP_07818894.1| peptidase, S41 family [Eremococcus coleocola ACS-139-V-Col8] gi|312619833|gb|EFR31270.1| peptidase, S41 family [Eremococcus coleocola ACS-139-V-Col8] Length = 486 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG S SV L L G S FD E AVK FQ H LD G+V T Sbjct: 400 LSLGQHSDSVANLNVILNGMGY---SANQKDEFDQDTEKAVKAFQKDHDLDQDGIVTGDT 456 Query: 162 LEAMNVPVDLRIR 174 A+N+ ++ Sbjct: 457 SAAINLAAQEYLQ 469 >gi|115375071|ref|ZP_01462340.1| negative regulator of beta-lactamase expression [Stigmatella aurantiaca DW4/3-1] gi|310825431|ref|YP_003957789.1| n-acetylmuramoyl-l-alanine amidase, family 2 [Stigmatella aurantiaca DW4/3-1] gi|115367909|gb|EAU66875.1| negative regulator of beta-lactamase expression [Stigmatella aurantiaca DW4/3-1] gi|309398503|gb|ADO75962.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Stigmatella aurantiaca DW4/3-1] Length = 280 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSG 155 P L G++ +V++L++ L+ +G + ++ + F E+AVK FQ L +G Sbjct: 29 PPAGLRRGDTGPNVKKLQDALVKTGYMTQAQVNTGYGTFGPKTEAAVKKFQADKKLPTTG 88 Query: 156 MVDSSTLEAMNVPVD 170 T A+ + Sbjct: 89 FYGDLTHAALKKTLA 103 >gi|167900261|ref|ZP_02487662.1| bacteriophage-acquired protein [Burkholderia pseudomallei 7894] Length = 270 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AVK Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDETTERAVKALQAAAGLVDDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +++R Sbjct: 61 YAVLASGQRDPKHLTLADIVR 81 >gi|312794953|ref|YP_004027875.1| hypothetical protein RBRH_00889 [Burkholderia rhizoxinica HKI 454] gi|312166728|emb|CBW73731.1| Hypothetical protein RBRH_00889 [Burkholderia rhizoxinica HKI 454] Length = 268 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LG+ V RL+ RLI +G ++ +DA E+AV Q+ GL G+ Sbjct: 3 PLRLGDHGYEVGRLQRRLIRAGY---RPQVTHRYDAATEAAVTALQIHTGLVVDGIAGPQ 59 Query: 161 TLEAMN 166 TL A+N Sbjct: 60 TLIALN 65 >gi|168177537|ref|ZP_02612201.1| spore-cortex-lytic enzyme [Clostridium botulinum NCTC 2916] gi|226947425|ref|YP_002802516.1| spore-cortex-lytic enzyme [Clostridium botulinum A2 str. Kyoto] gi|182671104|gb|EDT83078.1| spore-cortex-lytic enzyme [Clostridium botulinum NCTC 2916] gi|226841988|gb|ACO84654.1| spore-cortex-lytic enzyme [Clostridium botulinum A2 str. Kyoto] Length = 231 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + +++ +L G + G+ F +AV+ FQ ++GL G++ TL A Sbjct: 43 GHRGDIISQVQRKLKAWGYY--NGGVDGIFGHQTYTAVRYFQSKNGLTVDGIIGDKTLAA 100 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + N + L G Sbjct: 101 LGIKTGASGSSSSSNNQDVMLLARLINGE 129 >gi|86749088|ref|YP_485584.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86572116|gb|ABD06673.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 233 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 51/180 (28%), Gaps = 46/180 (25%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 D ++ L R + ++++ P L V G +R + VGR D T Sbjct: 66 DASAAEMPARLKRQIVSYATREAPGTIVIDTPNTYLYYVLGGGRAIRYGIGVGR-DGFTW 124 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 I R P W P +I + YL + Sbjct: 125 SGVQSITRKAEWPDWTPPPEMIARQP---------YLPRH-------------------- 155 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + Y +H T P +SGC+R+ N Sbjct: 156 ----------MAGGPGNPLGARAMYL--GGTIYRIHGTNAPSTIGT---HVSSGCIRLTN 200 >gi|197334919|ref|YP_002157038.1| general secretion pathway protein A [Vibrio fischeri MJ11] gi|197316409|gb|ACH65856.1| general secretion pathway protein A [Vibrio fischeri MJ11] Length = 518 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 4/111 (3%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 ++ + + + + + + + W P + R + G+ ++ L L + L+ Sbjct: 407 LLPSKRVEVSHQWFSRHWNGAYVQLWQKPIITERAMRKGDEGAAIFALNHLLSTA--LEQ 464 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 S FD E VK FQ GL G+ SSTL ++ + LQ Sbjct: 465 PMVESDRFDEKTEQQVKQFQEIFGLKEDGIAGSSTLMWLDSVTNANAPLLQ 515 >gi|289806037|ref|ZP_06536666.1| hypothetical protein Salmonellaentericaenterica_16947 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 242 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 35 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 93 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 94 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 119 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 T H T F +R + GC+R+RN D +L P +R I Sbjct: 120 YIGRLYAT--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDHVPVGTRVQI 167 >gi|296103662|ref|YP_003613808.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058121|gb|ADF62859.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 311 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 62/220 (28%), Gaps = 50/220 (22%) Query: 176 LQVNLMRIKKLLEQKMGL---RYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-I 230 L + R+ + + + ++VN+ L G + +G+ R+TP Sbjct: 75 LPQSGTRLVVPQQLILPDTVRKGIVVNVAEMRLYYYPPGSNTVEVFPIGIGQAGRETPRN 134 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + + R P W + ++ + Sbjct: 135 WVTAVERKQEGPTWSPTPNTRRE-----------------------------------YA 159 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 E G N M + H T F +R + GC+R+RN Sbjct: 160 KEGKTLPAFVPAGPDNPMGLYALYIGRLYAI--HGTNSN--FGIGLR-VSQGCIRLRN-N 213 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKT----TPVKLATEV 386 D+ +P I++ VK V++ + Sbjct: 214 DIKYLFDNVSPGTRVQLIDQPVKVTTEPDGSRWVEVHEPL 253 >gi|291453033|ref|ZP_06592423.1| peptidoglycan-binding domain 1 [Streptomyces albus J1074] gi|291355982|gb|EFE82884.1| peptidoglycan-binding domain 1 [Streptomyces albus J1074] Length = 320 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + GGWP L G S +V ++ + G + + +AVK F Sbjct: 183 RGVDLGGGWPR-----LDPGASGATVVVVQRLMTQRG---HQLVADGQYGSVSVAAVKKF 234 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDL 171 Q GL G V +T + + + Sbjct: 235 QAAQGLVADGQVGPATWPKLVLTLRQ 260 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 45/161 (27%), Gaps = 30/161 (18%) Query: 16 VYLILPMGLSLVEK--PIHASVLDEIINESYH----SIVNDRFDNFLARVDMGIDSDIPI 69 V + G+ L + + D V + Sbjct: 177 VAFMAARGVDLGGGWPRLDPGASGATVVVVQRLMTQRGHQLVADGQYGSVSVAAV----- 231 Query: 70 ISKETIAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 K Q +++ G WP+L + L G+S V L+ L Sbjct: 232 ----------KKFQAAQGLVADGQVGPATWPKLVL-TLRQGSSGQQVSALQTALNRR--- 277 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +F + +AV+ +Q + L G T A+ Sbjct: 278 SAGLVVDGSFGSVTTTAVRAYQSLNRLVVDGEAGPVTWRAL 318 >gi|167464376|ref|ZP_02329465.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383048|ref|ZP_08056876.1| murein transglycosylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152817|gb|EFX45442.1| murein transglycosylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 12/89 (13%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNN 334 GK+ + + + + + I Y +H T P Sbjct: 68 GLGKQKTPTPIGEFTVINKYKNW------GSGFGTRWIGLNVPWGIYGIHGTNRPDSIG- 120 Query: 335 VVRFETSGCVRV--RNIIDLDVWLLKDTP 361 R ++ GC+R+ RN+ L W+ T Sbjct: 121 --RHQSHGCIRMYNRNVEILYEWVKIGTK 147 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P RPL G+S + VQ ++ RL +G + + F E A+K F+ H L Sbjct: 156 GPPYEDPRPLAAGDSGIDVQLIQYRLKSAGYF--NGICNGKFGPQTELALKRFEKDHDLP 213 Query: 153 PSGMVDSSTLEAMN 166 G++ EA+ Sbjct: 214 IDGVMGRQDYEALG 227 >gi|149371059|ref|ZP_01890654.1| hypothetical protein SCB49_05220 [unidentified eubacterium SCB49] gi|149355845|gb|EDM44403.1| hypothetical protein SCB49_05220 [unidentified eubacterium SCB49] Length = 222 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P L G+S+ +V+ L++ L+ S F E A+K FQ + + G Sbjct: 149 TIPSGYLRKGDSNENVKMLQKILLKLNYSPGSA--DGIFGLKTEVALKEFQEANNITIDG 206 Query: 156 MVDSSTLEAMN 166 + S T + Sbjct: 207 IYGSETRQVFE 217 >gi|302532090|ref|ZP_07284432.1| predicted protein [Streptomyces sp. C] gi|302440985|gb|EFL12801.1| predicted protein [Streptomyces sp. C] Length = 91 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 105 GNSSVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V+ ++ LI G KG+ F A ESAVK Q HGL G+V + T + Sbjct: 23 GDAGAKVKEIQALLIQHHGYAVGPKGVDGYFGAGTESAVKRLQRGHGLKADGIVSAKTWD 82 Query: 164 AMNVPVDLR 172 + R Sbjct: 83 RLRGEPLDR 91 >gi|300361594|ref|ZP_07057771.1| carboxy-terminal processing protease CtpA [Lactobacillus gasseri JV-V03] gi|300354213|gb|EFJ70084.1| carboxy-terminal processing protease CtpA [Lactobacillus gasseri JV-V03] Length = 482 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G L ++ FD ++AV FQ H L G+V+ Sbjct: 393 LKKSMTGVDVATLQQYLTALGYLPK--HVTGVFDDETKNAVIKFQKEHNLTTDGIVNGQV 450 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 451 QAQLYLAVAQKLQ 463 >gi|332709805|ref|ZP_08429762.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332351403|gb|EGJ30986.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 390 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 18/107 (16%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERL 118 + S +P + +E + ++ Y L G++ + V+ L++ L Sbjct: 166 PGDWLYSQLPRLRREVRQRLGSSVEDY----------------LREGDTGLKVKELQQSL 209 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G + F AV FQ GL+P+G+V S T +A+ Sbjct: 210 QTQGF--SPGPVDGIFGPATTKAVISFQKFEGLNPNGLVGSKTWDAL 254 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL G V+ L++RL G F + ++AV +Q GL G+V S Sbjct: 325 PLIEGAVGSEVEELQQRLQTQGFYA--GATDGDFGSRTKAAVIAYQKAKGLYADGIVGSI 382 Query: 161 TLE 163 T Sbjct: 383 TWS 385 >gi|256111912|ref|ZP_05452868.1| hypothetical protein Bmelb3E_04505 [Brucella melitensis bv. 3 str. Ether] gi|265993361|ref|ZP_06105918.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|262764231|gb|EEZ10263.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|326410365|gb|ADZ67429.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M28] gi|326553658|gb|ADZ88297.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M5-90] Length = 244 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 113 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 170 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 171 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 196 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 197 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 225 >gi|17989404|ref|NP_542037.1| hypothetical protein BMEII1059 [Brucella melitensis bv. 1 str. 16M] gi|260564329|ref|ZP_05834814.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|17985279|gb|AAL54301.1| protein ybis precursor [Brucella melitensis bv. 1 str. 16M] gi|260151972|gb|EEW87065.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] Length = 277 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 146 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 203 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 204 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 229 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 230 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 258 >gi|282864837|ref|ZP_06273891.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces sp. ACTE] gi|282560262|gb|EFB65810.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces sp. ACTE] Length = 517 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 21/142 (14%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 + + + ++ + T + +A + + + G Sbjct: 385 GSAGAQVKAVQQLLHDQGYEPGAVDG---------LFGTATKSAV-QAFQTTRGLPADGT 434 Query: 94 -----WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 W L L G S +V+RL+ L + L + + F ++AV+ Sbjct: 435 VGARTWTALLSAGTTPQLSQGASGDAVKRLQRALTAA--LGATLAVDGTFGPATDTAVRG 492 Query: 145 FQMRHGLDPSGMVDSSTLEAMN 166 +Q GL G V T A+ Sbjct: 493 YQKARGLTVDGHVGPDTWAALQ 514 >gi|90407231|ref|ZP_01215418.1| general secretion pathway protein a [Psychromonas sp. CNPT3] gi|90311654|gb|EAS39752.1| general secretion pathway protein a [Psychromonas sp. CNPT3] Length = 526 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 18/163 (11%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL--------ARVDMGI---- 63 +Y I + L ++ S S +++ A + + Sbjct: 348 LYAIWGYEVPLEGIDCTQGERVSLVCFSRRSNMSELARLNYPAILKLNNADQSVYVVLYK 407 Query: 64 --DSDIPIISKETIAQTEKAIAFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLI 119 + ++ + I+ +E + +Y D W P L L +V+ L++ L Sbjct: 408 IKEDYQLLLGSQLISVSEAWLQYYWDGDLTLLWKRPFKEKGVLKLSQQGENVRWLKQTLS 467 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G FD + S V+ FQ L G+V S TL Sbjct: 468 TLQ--AVDLGNDDYFDPALASKVQQFQETQQLSQDGIVGSRTL 508 >gi|67923403|ref|ZP_00516882.1| Peptidoglycan-binding domain 1:Staphylococcus nuclease (SNase-like) [Crocosphaera watsonii WH 8501] gi|67854738|gb|EAM50018.1| Peptidoglycan-binding domain 1:Staphylococcus nuclease (SNase-like) [Crocosphaera watsonii WH 8501] Length = 319 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG++ +V ++++ L L + F + +AV +Q L G+V Sbjct: 101 SLKLGDTGEAVGQVQKYLAKLNYLPSNSP-DGIFGSQTNAAVLKYQKDKNLTIDGVVGCG 159 Query: 161 TLEAMNVPVD 170 T ++ V Sbjct: 160 TFSSLKKDVS 169 >gi|332978200|gb|EGK14932.1| N-acetylmuramoyl-L-alanine amidase [Desmospora sp. 8437] Length = 330 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 6/150 (4%) Query: 94 W-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W P + R G+ V L+ RL G + F + AV+ FQ R GL Sbjct: 103 WAPGVSNRIFKKGDRGGYVWELQRRLQFIGYYS--GKIDGKFGWQTDRAVRDFQYRFGLR 160 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G V S T + Q R K+ V + L + Sbjct: 161 VDGRVGSKTKLKLWKATRRWSPQAGKAPQRKAKVTGLTRMKPMTQVPKYTSGLSKYDIDV 220 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + + ++ + ++ N Sbjct: 221 IA---KAVHAEARGESYTGKVAVASVILNR 247 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G + V L+ RL G + + AV+LFQ + GL+ G+V Sbjct: 32 KSELKVGAAGGDVYELQGRLKYLGFY--TGKIDGRLGWRTYRAVRLFQYQFGLEVDGLVG 89 Query: 159 SSTLEAMNVPVDLRI 173 S T + Sbjct: 90 SHTKRKLVEASKEWA 104 >gi|297519285|ref|ZP_06937671.1| hypothetical protein EcolOP_16715 [Escherichia coli OP50] Length = 170 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 6/68 (8%) Query: 297 IFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLD 353 G N + + N Y +H T P +SGC+R+ L Sbjct: 1 PPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALF 57 Query: 354 VWLLKDTP 361 + TP Sbjct: 58 SSVRTGTP 65 >gi|220933023|ref|YP_002509931.1| ErfK/YbiS/YcfS/YnhG family protein [Halothermothrix orenii H 168] gi|219994333|gb|ACL70936.1| ErfK/YbiS/YcfS/YnhG family protein [Halothermothrix orenii H 168] Length = 263 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 12/86 (13%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVV 336 GK V + + + + + Y +H T +P Sbjct: 104 GKPTTRSPVGEWAIIGKSKDW------GGGFGTRWLGLNVPWGIYGIHGTNKPGSIG--- 154 Query: 337 RFETSGCVRV--RNIIDLDVWLLKDT 360 R + GC+R+ R++ +L + T Sbjct: 155 RAASHGCIRMFNRDVEELYDIVPVKT 180 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + +SV +L++ L G + + AVK + + GL G+ D S Sbjct: 197 LKPGMTGLSVMQLQDNLREYGF--NPGYMDARYGPTTVEAVKELESQFGLKVDGIADWSV 254 Query: 162 LEAMNVP 168 L +N+P Sbjct: 255 LYILNLP 261 >gi|316932689|ref|YP_004107671.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315600403|gb|ADU42938.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 261 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 44/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ P L V++ LR V VGR T I P W P+ ++ + Sbjct: 134 IVIDTPNKYLYLVQDDGKALRYGVGVGRPG-FTWSGVKTITAKREWPAWTPPKEMLARR- 191 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ + G N + + + Sbjct: 192 --------------------------------------PDLPRHMEGGPQNPLGARAMYL 213 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC+R+RN Sbjct: 214 GSS-LYRIHGSNEPWTIGTN---VSSGCIRMRN 242 >gi|240139393|ref|YP_002963868.1| hypothetical protein MexAM1_META1p2838 [Methylobacterium extorquens AM1] gi|240009365|gb|ACS40591.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 222 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 51/199 (25%), Gaps = 46/199 (23%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L + + + + R ++V+ L ++ Sbjct: 49 LPTANAALPADIPGAPTDPLASTVPQMTAIPRDTVPYSGPYAPGTIVVSTTERRLYLIQP 108 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G LR V VGR T + P W P ++++ Sbjct: 109 GGEALRYGVGVGRPG-FTWGGTQTVTMKREWPDWRPPSEMLRRR---------------- 151 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEP 329 P+ G N + + + + Y +H + EP Sbjct: 152 -----------------------PDLPRYMKGGIENPLGARAMYLGN--TIYRIHGSNEP 186 Query: 330 ILFNNVVRFETSGCVRVRN 348 +SGC+R+ N Sbjct: 187 ETIGT---AVSSGCIRMTN 202 >gi|332652765|ref|ZP_08418510.1| spore cortex-lytic enzyme SleC [Ruminococcaceae bacterium D16] gi|332517911|gb|EGJ47514.1| spore cortex-lytic enzyme SleC [Ruminococcaceae bacterium D16] Length = 408 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 L G+ V+ L+ L ++ + + S + + AV+ +Q + GL G Sbjct: 279 PGILRPGDRGSDVRILQYMLALTAEFNESLTPIRVDGIYGNATAQAVRKYQAQAGLQVDG 338 Query: 156 MVDSSTLEAM 165 +V +T ++ Sbjct: 339 IVGPNTWYSL 348 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 54/181 (29%), Gaps = 22/181 (12%) Query: 70 ISKETIAQTEKAIAFY---------QDILSRGGWPELPIRPLHLGNSSVSVQRLRERL-I 119 ++++ + E I Y QD R P PL LG++ V L+ + Sbjct: 145 LAQQGYSAME--ILRYYYGNDIELVQDAPVRNLGQSYPGTPLRLGSTGDDVLVLKTMINR 202 Query: 120 ISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE-----AMNVPVDL 171 +S ++ FD E AVK FQ L P G+V +T + Sbjct: 203 VSQSYPAIPKLFPVTNVFDESTEQAVKTFQQIFNLTPDGIVGKATWYKLVYLYVGTNQLS 262 Query: 172 RIRQLQVNLMRIKKLLEQ--KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + + + G R V I L L + G T Sbjct: 263 ELVSMGQQFQTFSFQYPGILRPGDRGSDVRILQYMLALTAEFNESLTPIRVDGIYGNATA 322 Query: 230 I 230 Sbjct: 323 Q 323 >gi|332296341|ref|YP_004438264.1| NLP/P60 protein [Thermodesulfobium narugense DSM 14796] gi|332179444|gb|AEE15133.1| NLP/P60 protein [Thermodesulfobium narugense DSM 14796] Length = 233 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ S VQ ++E+L G + ++ +D E AVKL+Q L +G+VD Sbjct: 24 AITLKPGDISDDVQNIKEKLYDLGY---NVTVNKVYDEKTERAVKLYQKEAKLPITGIVD 80 Query: 159 SSTLEAMNVPVDLRIRQLQV 178 T + + + I + + Sbjct: 81 DITYQCLTMGRMTVIEKYKT 100 >gi|313896346|ref|ZP_07829899.1| NlpC/P60 family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320529278|ref|ZP_08030368.1| NlpC/P60 family protein [Selenomonas artemidis F0399] gi|312975145|gb|EFR40607.1| NlpC/P60 family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320138452|gb|EFW30344.1| NlpC/P60 family protein [Selenomonas artemidis F0399] Length = 246 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L++ L +G + + FD E AV FQ + +G+V+++ Sbjct: 27 TLREGSHGHEVLVLQQALQNAGYKIKNA--NGVFDKDTERAVAEFQRDSKIKITGVVNNA 84 Query: 161 TLEAMNVPVDLR 172 T A+ R Sbjct: 85 TWRALKDAPATR 96 >gi|238853074|ref|ZP_04643466.1| periplasmic protease [Lactobacillus gasseri 202-4] gi|238834322|gb|EEQ26567.1| periplasmic protease [Lactobacillus gasseri 202-4] Length = 482 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G L ++ FD ++AV FQ H L G+V+ Sbjct: 393 LKKSMTGVDVATLQQYLTALGYLPK--HVTGVFDDETKNAVIKFQKEHDLTTDGIVNGQV 450 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V +++ L + L + M Sbjct: 451 QAQLYLAVAQKLQDDNPALKKALSLNLKDMED 482 >gi|317127242|ref|YP_004093524.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cellulosilyticus DSM 2522] gi|315472190|gb|ADU28793.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cellulosilyticus DSM 2522] Length = 169 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%) Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +P I + P A + + ++ +H T +P N + GC+R+ N Sbjct: 94 ETPTGKFIIINKAPNPGGAFGTMWMSLSKQH-YGIHGTNDPSSIGN---AVSKGCIRMHN 149 Query: 349 --IIDLDVWLLKDTP 361 + +L + TP Sbjct: 150 QDVEELASIVPIGTP 164 >gi|217979157|ref|YP_002363304.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217504533|gb|ACK51942.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 249 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 70/233 (30%), Gaps = 49/233 (21%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 S A + A F +G G V +R L R + Sbjct: 37 PAGAPSSAPAGAVLSQA-GDFNSMYGEVKDGKF---------VVPAVRQSDLGPAFRRSE 86 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 ++++ A L VE+G +R + VGR S +N P W Sbjct: 87 VAYSGSEAPGTIVIDPTAHYLYLVESGGKAMRYGIGVGREGFA-WSGASTVNSKQEWPDW 145 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P+ ++++ L + + G G Sbjct: 146 YPPKEMLERR--PELLKQMS-------QLQSGTG---------------------MPGGP 175 Query: 305 INAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 N + + Y + Y +H T EP +SGC+R+ ++++DL Sbjct: 176 SNPLGARAHYLYQGKVDTLYRIHGTNEPATIGQS---VSSGCIRMVNQDVMDL 225 >gi|260568490|ref|ZP_05838959.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|260155155|gb|EEW90236.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 277 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 146 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 203 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 204 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 229 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 230 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 258 >gi|163759692|ref|ZP_02166777.1| hypothetical protein HPDFL43_10072 [Hoeflea phototrophica DFL-43] gi|162283289|gb|EDQ33575.1| hypothetical protein HPDFL43_10072 [Hoeflea phototrophica DFL-43] Length = 206 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 41/168 (24%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R ++ + ++++ L V + + VGR T ++I R Sbjct: 59 RKMISFKENHPVGTIIIDTSDRRLYHVTKPGKAMAYGIGVGREG-FTWQGKNKITRKAEW 117 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P+ + + R P Y+ Sbjct: 118 PGWTPPQVMRDRVKRQEGRVLPAYM----------------------------------P 143 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + S Y +H T +P + +SGC+R+ N Sbjct: 144 GGPDNPLGARAMYIGS--TIYRIHGTNQPWTIGQAM---SSGCIRMAN 186 >gi|23499946|ref|NP_699386.1| hypothetical protein BRA0184 [Brucella suis 1330] gi|161620264|ref|YP_001594150.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|163844373|ref|YP_001622028.1| hypothetical protein BSUIS_B0187 [Brucella suis ATCC 23445] gi|254691383|ref|ZP_05154637.1| hypothetical protein Babob68_14785 [Brucella abortus bv. 6 str. 870] gi|254699478|ref|ZP_05161306.1| hypothetical protein Bsuib55_01264 [Brucella suis bv. 5 str. 513] gi|254706267|ref|ZP_05168095.1| hypothetical protein BpinM_04540 [Brucella pinnipedialis M163/99/10] gi|254711440|ref|ZP_05173251.1| hypothetical protein BpinB_14537 [Brucella pinnipedialis B2/94] gi|254712041|ref|ZP_05173852.1| hypothetical protein BcetM6_01337 [Brucella ceti M644/93/1] gi|254715110|ref|ZP_05176921.1| hypothetical protein BcetM_01342 [Brucella ceti M13/05/1] gi|254719921|ref|ZP_05181732.1| hypothetical protein Bru83_10324 [Brucella sp. 83/13] gi|256014970|ref|YP_003104979.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|256029930|ref|ZP_05443544.1| hypothetical protein BpinM2_04625 [Brucella pinnipedialis M292/94/1] gi|256256568|ref|ZP_05462104.1| hypothetical protein Babob9C_04235 [Brucella abortus bv. 9 str. C68] gi|260756996|ref|ZP_05869344.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260882807|ref|ZP_05894421.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|261216818|ref|ZP_05931099.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261313712|ref|ZP_05952909.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261319046|ref|ZP_05958243.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261319685|ref|ZP_05958882.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|261749931|ref|ZP_05993640.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|265984928|ref|ZP_06097663.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|265986950|ref|ZP_06099507.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|306838509|ref|ZP_07471347.1| Protein YBIS precursor [Brucella sp. NF 2653] gi|23463525|gb|AAN33391.1| conserved hypothetical protein [Brucella suis 1330] gi|161337075|gb|ABX63379.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|163675096|gb|ABY39206.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|255997630|gb|ACU49317.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|260677104|gb|EEX63925.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260872335|gb|EEX79404.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|260921907|gb|EEX88475.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261292375|gb|EEX95871.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|261298269|gb|EEY01766.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261302738|gb|EEY06235.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261739684|gb|EEY27610.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|264659147|gb|EEZ29408.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|264663520|gb|EEZ33781.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306406376|gb|EFM62617.1| Protein YBIS precursor [Brucella sp. NF 2653] Length = 244 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 113 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 170 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 171 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 196 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 197 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 225 >gi|260462669|ref|ZP_05810875.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259031575|gb|EEW32845.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 247 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 42/188 (22%) Query: 163 EAMNVPVDLRIRQLQVNLMRIK--KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 A+ P + Q+N + + + ++++ L +E R V Sbjct: 81 AAVQAPAKRVAMRPQINPIYLPQEVAYDGPQKPGTIVIDTTQNFLFLIEKNGKARRYGVG 140 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 G+ + +I P W P +I+++ A R P YL Sbjct: 141 TGKPGFE-WSGTHKITNKREWPDWRPPAQMIKRE-AAKGRYLPTYLA------------- 185 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 G N + + + + +H T +P + Sbjct: 186 ---------------------GGMENPLGARALYLGTTE-YRIHGTNQPWTIG---GAVS 220 Query: 341 SGCVRVRN 348 SGC+R+RN Sbjct: 221 SGCIRMRN 228 >gi|297249925|ref|ZP_06933626.1| hypothetical protein BAYG_02699 [Brucella abortus bv. 5 str. B3196] gi|297173794|gb|EFH33158.1| hypothetical protein BAYG_02699 [Brucella abortus bv. 5 str. B3196] Length = 313 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 182 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 239 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 240 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 265 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 266 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 294 >gi|170726803|ref|YP_001760829.1| peptidoglycan-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169812150|gb|ACA86734.1| Peptidoglycan-binding domain 1 protein [Shewanella woodyi ATCC 51908] Length = 294 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 12/119 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + +S V+ L+E L + L P + F E AV FQ + GL G+V + T Sbjct: 4 LRIKSSGEEVKSLQELLTVL-HLSP-GPIDGEFGDKTEDAVLQFQEQQGLYADGVVGTIT 61 Query: 162 LEAMNVPVDLRIR---QLQVNLMRIKKL-------LEQKMGLRYVLVNIPAASLEAVEN 210 A+ +++ Q V R+ + Y+ + A L E Sbjct: 62 WNALKKAAVVQLDEQNQPSVESDRLMSWQRVAADPYQDGYNRFYLREDAAKAYLRVYEK 120 >gi|253681528|ref|ZP_04862325.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum D str. 1873] gi|253561240|gb|EES90692.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum D str. 1873] Length = 307 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 55/166 (33%), Gaps = 28/166 (16%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LG++ V+ L+++L G L F E A+ FQ R+ L G+V S Sbjct: 83 PLKLGSNGNEVKALQQKLNKFGY---KINLDGIFGHSTEIAIYDFQKRNDLARDGIVGKS 139 Query: 161 TLEAMNVPVDLRI--------------RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 TL+ +++ + N + K + Y+ VN Sbjct: 140 TLKKLDLEPTEKTMYNPKANIFSSVNSSNYFENFINKK--NSNSITDYYIWVNTNTPKTY 197 Query: 207 AVENG----KVGLRSTVIVGRVDRQTPILHSRI-----NRIMFNPY 243 + K+ VG+ T I + I+ N Sbjct: 198 IFKGYNHHWKLIRTLPCTVGKSSTPTIKGTFSIGNKGESFIVRNNP 243 >gi|146338158|ref|YP_001203206.1| putative ErfK/YbiS/YcfS/YnhG [Bradyrhizobium sp. ORS278] gi|146190964|emb|CAL74969.1| conserved hypothetical protein; putative ErfK/YbiS/YcfS/YnhG precursor [Bradyrhizobium sp. ORS278] Length = 220 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 66/236 (27%), Gaps = 52/236 (22%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + QL L R L+ + ++++ L V G LR V VGR Sbjct: 29 APLTGQDEDSQLPDRLRRTIVNLDTREAPGTIIIDTGNTYLYYVLGGGRALRYGVGVGRE 88 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 T + R P W P +I + Sbjct: 89 G-FTWSGVQSVTRKAEWPDWHPPAQMIARQ------------------------------ 117 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 P G N + + + S +H T +P F +SGC+ Sbjct: 118 ---------PYLPRFMAGGPGNPLGARAMYLGSSE-YRIHGTNDPTTIGK---FVSSGCI 164 Query: 345 RVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV-KLAT-----EVPVHFVY 392 R+ N + DL + T V + V L + +PV VY Sbjct: 165 RLTNEDVSDLFSRVQVGTKVVVLPKSASVQARAAASRVTSLPSGRQAMSLPVAAVY 220 >gi|295103234|emb|CBL00778.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii SL3/3] Length = 156 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + G P LH G S +V+ ++++L G + A +AV+ F Sbjct: 79 RYTAKHGLKVPYPGIVLHTGASGGTVRLVQQKLNSLG---ERLKDDGKYGAATAAAVQRF 135 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q R+GL G V +T E M Sbjct: 136 QRRNGLTADGSVGCATWEKM 155 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S V ++ L D + F A + AV+ FQ+++ ++ G V Sbjct: 10 LQRGSSGPDVALVQTWLNGVRDACTWYDALKADGKFGASTQRAVQEFQLKNKMNMDGKVG 69 Query: 159 SSTLEAM 165 +T + Sbjct: 70 QNTWNVL 76 >gi|218530824|ref|YP_002421640.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254561810|ref|YP_003068905.1| hypothetical protein METDI3404 [Methylobacterium extorquens DM4] gi|218523127|gb|ACK83712.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254269088|emb|CAX25051.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 222 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 51/199 (25%), Gaps = 46/199 (23%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L + + + + R ++V+ L ++ Sbjct: 49 LPTANAALPADIPGAPADPLASTVPQMTAIPRDTVPYSGPYAPGTIVVSTTERRLYLIQP 108 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G LR V VGR T + P W P ++++ Sbjct: 109 GGEALRYGVGVGRPG-FTWGGTQTVTMKREWPDWRPPSEMLRRR---------------- 151 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEP 329 P+ G N + + + + Y +H + EP Sbjct: 152 -----------------------PDLPRYMKGGIENPLGARAMYLGN--TIYRIHGSNEP 186 Query: 330 ILFNNVVRFETSGCVRVRN 348 +SGC+R+ N Sbjct: 187 ETIGT---AVSSGCIRMTN 202 >gi|254702602|ref|ZP_05164430.1| hypothetical protein Bsuib36_01362 [Brucella suis bv. 3 str. 686] gi|261753184|ref|ZP_05996893.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|261742937|gb|EEY30863.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] Length = 244 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 113 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 170 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 171 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 196 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 197 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 225 >gi|73669348|ref|YP_305363.1| hypothetical protein Mbar_A1842 [Methanosarcina barkeri str. Fusaro] gi|72396510|gb|AAZ70783.1| conserved protein [Methanosarcina barkeri str. Fusaro] Length = 306 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+++++ LI P G + F E AV+ +Q GL G++ T Sbjct: 30 LQRGDRGSAVRKVQQALIFLDFPVPEVGANGIFGGETELAVRSYQESRGLKVDGIIGQET 89 Query: 162 LEAMN 166 + +++ Sbjct: 90 IGSLD 94 >gi|239833528|ref|ZP_04681856.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] gi|239821591|gb|EEQ93160.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] Length = 255 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 40/185 (21%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A N +R Q+ + K ++++ L V++ +R V VG+ Sbjct: 92 AANPATTVRKHQIDPAYLPQTVSYSGKEKPGTIVIDTGKRFLYLVQSDGKAMRYGVGVGK 151 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + RI+R P W P+ ++ ++ Sbjct: 152 QG-FSWKGSQRISRKAEWPTWTPPKEMMARE----------------------------- 181 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 + R + G N + + + +H T +P + +SGC Sbjct: 182 ------RKKGRILPARMEGGINNPLGARALYLG-ATLYRIHGTNQPWTIGKAM---SSGC 231 Query: 344 VRVRN 348 +R+RN Sbjct: 232 IRMRN 236 >gi|168182186|ref|ZP_02616850.1| spore-cortex-lytic enzyme [Clostridium botulinum Bf] gi|237793523|ref|YP_002861075.1| spore-cortex-lytic enzyme [Clostridium botulinum Ba4 str. 657] gi|182674550|gb|EDT86511.1| spore-cortex-lytic enzyme [Clostridium botulinum Bf] gi|229262004|gb|ACQ53037.1| spore-cortex-lytic enzyme [Clostridium botulinum Ba4 str. 657] Length = 231 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + +++ +L G + G+ F +AV+ FQ ++GL G++ TL A Sbjct: 43 GHRGDIISQVQRKLKAWGYY--NGGVDGIFGHQTYTAVRYFQSKNGLTVDGIIGDKTLAA 100 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + N + L G Sbjct: 101 LGIKTGSSGSSSSSNNQDVMLLARLINGE 129 >gi|320008650|gb|ADW03500.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G + V +L+ R +SG + + ++ +AVK FQ +GL G+ Sbjct: 39 SRTLSSGATGADVTQLQIR--VSGYPGYNSVLAVDGSYGPATTAAVKRFQAAYGLTADGV 96 Query: 157 VDSSTLEAM 165 +T + Sbjct: 97 AGPATFTKL 105 >gi|254504310|ref|ZP_05116461.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] gi|222440381|gb|EEE47060.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] Length = 218 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 71/219 (32%), Gaps = 57/219 (26%) Query: 150 GLDPSGMVDSSTLEAMN----------VPVDLRIRQLQVNLM-------RIKKLLEQKMG 192 GL SG V ++T A + R +NL R + Sbjct: 18 GLAVSGCVSTTTQPAAPPVSPYLSMYRAMPEERFPIPAINLNKVPERYYRKQVRYNTPER 77 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 + ++V+ L V+ + +R V +GR + +RI R P WV P +IQ Sbjct: 78 VGTLIVDTSNYYLYLVQENGMAMRYGVGLGRAGFE-WSGRARIARKAPWPRWVPPEEMIQ 136 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ E W+ DPG N + + Sbjct: 137 RE----------------------------PELEQWSWKNGGM-----DPGLENPLGARA 163 Query: 313 IEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 + + + Y +H T E + +SGCVRV N Sbjct: 164 LYIYQGNVDTLYRIHGTAEYWTIGS---AVSSGCVRVMN 199 >gi|182435141|ref|YP_001822860.1| putative amidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463657|dbj|BAG18177.1| putative amidase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 519 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 16/133 (12%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG-----WPEL 97 V + + S P +A + + + G W L Sbjct: 391 PQVKAVQTLLNAQGYQAGAADGSFGPTTKGAV-----QAFQRARALEADGTVGPKTWTAL 445 Query: 98 ----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 L G S +V+RL+ L + L + G +F E+AV+ +Q L Sbjct: 446 LSAGTTPALAKGASGDAVKRLQRALTAA--LGTTVGADGSFGPATETAVRTYQTGRKLSV 503 Query: 154 SGMVDSSTLEAMN 166 G V +T A+ Sbjct: 504 DGKVGPATWGALQ 516 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ L G + +F + AV+ FQ L+ G V T A Sbjct: 387 GSTGPQVKAVQTLLNAQGY--QAGAADGSFGPTTKGAVQAFQRARALEADGTVGPKTWTA 444 Query: 165 M 165 + Sbjct: 445 L 445 >gi|256370856|ref|YP_003108680.1| Peptidoglycan-binding domain 1 protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007440|gb|ACU53007.1| Peptidoglycan-binding domain 1 protein [Acidimicrobium ferrooxidans DSM 10331] Length = 323 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +P L G S V+ L RL G + FD V A+ FQ R GL +G+ Sbjct: 1 MPFVSLRGGERSERVEDLCRRLRRLGF---ELEVRDEFDDEVAEAIVAFQRRRGLPETGV 57 Query: 157 VDSSTLEAM 165 VD T A+ Sbjct: 58 VDLVTWRAV 66 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 17/102 (16%) Query: 81 AIAFYQDILSRG-----GWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLD 125 A + + G W + +G+ V L+ +L G Sbjct: 45 AFQRRRGLPETGVVDLVTWRAVVEAGFRIGDRLLYLKRPALRGDDVAWLQGKLGSLGF-- 102 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + F SA+ FQ GL GM ++T+E + Sbjct: 103 DPGRVDGIFGPRTRSALMEFQANMGLPADGMCGAATIEELRR 144 >gi|188993784|ref|YP_001905794.1| peptidoglycan-binding protein [Xanthomonas campestris pv. campestris str. B100] gi|167735544|emb|CAP53759.1| peptidoglycan-binding protein [Xanthomonas campestris pv. campestris] Length = 616 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDP-SGMV 157 L G+SS V++L L G + + FDA + AV+ FQ +GL G Sbjct: 306 LKEGSSSREVRKLESNLSALGYTASNGDAFQMDQKFDASTKQAVEAFQHANGLTTVDGKA 365 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRI 183 +TL A+ D + R LQ NL+ + Sbjct: 366 GPATLRAI----DQQARSLQSNLIEL 387 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 3/80 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L + L+ LI G + AV FQ +GL +G Sbjct: 365 AGPATLRAIDQQARSLQSNLIELGFTGTDNKPLSVDGYLGNGTRQAVIAFQEANGLPATG 424 Query: 156 MVDSSTLEAMNVPVDLRIRQ 175 + D TL+++ R + Sbjct: 425 VADKGTLDSLAQQAAQRSQT 444 >gi|282848940|ref|ZP_06258329.1| 3D domain protein [Veillonella parvula ATCC 17745] gi|282581215|gb|EFB86609.1| 3D domain protein [Veillonella parvula ATCC 17745] Length = 202 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L S + + E AV+ FQ GL G V Sbjct: 24 AKTIDRGQRGHHVSKVQTMLKHQGFLHDS--IDGIYGHNTEQAVRKFQKSKGLPVDGRVG 81 Query: 159 SSTLEAMNV 167 +T+ A+ Sbjct: 82 PATMNALEK 90 >gi|301064267|ref|ZP_07204710.1| putative secretion ATPase, PEP-CTERM locus family protein [delta proteobacterium NaphS2] gi|300441712|gb|EFK06034.1| putative secretion ATPase, PEP-CTERM locus family protein [delta proteobacterium NaphS2] Length = 521 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S +V L+E L G L L+ FD VK FQ GL+ G+V T Sbjct: 450 LKQGMRSPAVFTLQEILKDLGYL---VTLNGNFDQQTLEEVKRFQDEFGLEADGVVGFRT 506 Query: 162 L 162 L Sbjct: 507 L 507 >gi|254514047|ref|ZP_05126108.1| general secretion pathway protein A [gamma proteobacterium NOR5-3] gi|219676290|gb|EED32655.1| general secretion pathway protein A [gamma proteobacterium NOR5-3] Length = 563 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Query: 94 WPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P R L LG+S V+R+ E L D P FDA +E VKLFQ + GL Sbjct: 463 WRPSPGVLRTLQLGDSGEDVRRVAE-LFARLDRQPKPLTESLFDARLEQRVKLFQQQQGL 521 Query: 152 DPSGMVDSSTLEAMNVPVDL 171 G++ +TL A+++ V Sbjct: 522 RADGVLGENTLRALSLSVGD 541 >gi|212638810|ref|YP_002315330.1| erfK/srfK family protein [Anoxybacillus flavithermus WK1] gi|212560290|gb|ACJ33345.1| Uncharacterized erfK/srfK family protein, probably secreted [Anoxybacillus flavithermus WK1] Length = 167 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 22/121 (18%) Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNN-----IHMIDEKGKEVFVEEVDWNSPEPPN 295 NP P I+ K + + + + K + E + + + N Sbjct: 20 NPRVGDPMIIVNK------QTNQLAFIRHGKIERIYRVATGKTNVLTPEGLFTVTVKAVN 73 Query: 296 FIFRQD--PG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 +R+ PG N + + I F +H T P R+ T GCVR+ Sbjct: 74 PYYRKKNIPGGAPNNPLGTRWIGFDARGTDGRTYGIHGTNRPESIG---RYITEGCVRMH 130 Query: 348 N 348 N Sbjct: 131 N 131 >gi|149915748|ref|ZP_01904273.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. AzwK-3b] gi|149810330|gb|EDM70175.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. AzwK-3b] Length = 184 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPI 330 + + + + + ++ Q G N + + + F + +TY +H T P Sbjct: 93 WRPTDEMIERDPSAYGRFKGNDY--VQPGGPENPLGARALYLFQNGRDTYFRIHGTNAPR 150 Query: 331 LFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 R ++GC+R+ ++ DL + T Sbjct: 151 SIG---RSVSNGCIRMLNEHVQDLYERVPVGTV 180 >gi|159901702|ref|YP_001547948.1| N-acetylmuramoyl-L-alanine amidase [Herpetosiphon aurantiacus ATCC 23779] gi|159894741|gb|ABX07820.1| N-acetylmuramoyl-L-alanine amidase family 2 [Herpetosiphon aurantiacus ATCC 23779] Length = 356 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 25/166 (15%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 Y +LP + VE + + + + + + Sbjct: 202 FYSLLPQLRAAVETHLAGGNVGRMWPTLKR-------NTPATSLAKTAQYLLRTHGASIT 254 Query: 76 A------QTEKAIAFYQ--------DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIIS 121 A TE A+ +Q I+ W L R + LG+S +V+ ++ RL Sbjct: 255 ADGAFGPATEAAVKAFQTAKGLTVNGIIGAATWESLI-RTVRLGDSGDAVRAVQTRLAAQ 313 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 G + F A + + VK FQ L G+V ++ + + Sbjct: 314 GY---TTTSDGQFTATLNALVKTFQTNRQLSVDGVVGINSWNHLAM 356 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 S AF E+AVK FQ GL +G++ ++T E++ V Sbjct: 251 ASITADGAFGPATEAAVKAFQTAKGLTVNGIIGAATWESLIRTVR 295 >gi|150395622|ref|YP_001326089.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150027137|gb|ABR59254.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 228 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 42/172 (24%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R K ++V+ + L ++ R + VGR D ++ R Sbjct: 52 YWRTKVRFRTDEAPGTIIVDTNSKYLYYIDGRNRATRYGIGVGR-DGFGWSGVVKVGRKA 110 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P + ++ + Sbjct: 111 EWPSWTPPAEMRVRE-----------------------------------RAKGRILPIT 135 Query: 300 QDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 Q G N + + + R+ + +H T +P + +SGC+R+ N Sbjct: 136 QPGGIDNPLGARALYLYKGGRDTIFRIHGTNQPWTIGQNM---SSGCIRMMN 184 >gi|295101500|emb|CBK99045.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii L2-6] Length = 717 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 5/125 (4%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH 103 + N D + R S I +S + +A+ + LS G W L Sbjct: 214 FQRQFNLTADGVVGRSTWYKISYI-YVSVKDLAELTSEGETFSGTLSDGSW-NFGSSVLK 271 Query: 104 LGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G++ V++++ L + PS + + + +AV+ FQ R+GL G+V + Sbjct: 272 QGSTGSKVEQMQFWLSTLAQYESSIPSVTVDGVYGSGTAAAVRAFQRRYGLTVDGIVGRT 331 Query: 161 TLEAM 165 T + Sbjct: 332 TWTEL 336 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 25/228 (10%) Query: 22 MGLSLVEKPIHASVLDEI------INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 G S++++ S ++++ + + SI + D + Sbjct: 265 FGSSVLKQGSTGSKVEQMQFWLSTLAQYESSIPSVTVDGVYGSGTAAAVRAF----QRRY 320 Query: 76 AQTEKAIA----------FYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLR--ERLIISG 122 T I ++ I S G P P L G+S +V+ ++ ++ + Sbjct: 321 GLTVDGIVGRTTWTELYDQFRSIQSDNGIPNAYPGTALRQGSSGQNVRLVQFWLKIARTV 380 Query: 123 DLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNL 180 + + F + +AV+ FQ GL G+V +T + V D+ R L +L Sbjct: 381 YSSLNNVTVDGIFGSSTTAAVRRFQTYFGLTSDGVVGRTTWNKLYEVYNDIANRLLSPSL 440 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + G V L + + + S I GR T Sbjct: 441 RPGEYPGVLRNGSTGTAVRELQFYLYLMSAYQSSIPSVSIDGRFGAAT 488 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 9/133 (6%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDILSRGGWPELPI 99 + V+ F + + + S + +T K Y DI +R P L Sbjct: 383 SLNNVTVDGIFGSSTTAAVRRFQTYFGLTSDGVVGRTTWNKLYEVYNDIANRLLSPSLRP 442 Query: 100 R----PLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLD 152 L G++ +V+ L+ L + PS + F A E+AV+ +Q GL Sbjct: 443 GEYPGVLRNGSTGTAVRELQFYLYLMSAYQSSIPSVSIDGRFGAATEAAVRAYQRFAGLT 502 Query: 153 PSGMVDSSTLEAM 165 G+V T +++ Sbjct: 503 VDGIVGRKTWDSL 515 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL G++ +V L+ +L I+ D + F + VK FQ + L Sbjct: 164 PGSPLRQGSTGAAVFTLQRQLNRITKDYPFLGLLTVDGIFGRKMTETVKKFQRQFNLTAD 223 Query: 155 GMVDSSTLEAMN 166 G+V ST ++ Sbjct: 224 GVVGRSTWYKIS 235 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Query: 92 GGWPELPIRPLHLGNSSVSVQRL------RERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G P+ P R + G+ V+ + R +L D F +AVK Sbjct: 626 GQGPDYPDRAMKEGSVGADVRLIEGWLNDRSQLYCEEDYVADNAS---FGPEDTAAVKET 682 Query: 146 QMRHGLDPSGMVDSSTLEAMNV 167 Q R GL+P+G+VD T A+ Sbjct: 683 QQRAGLEPNGVVDRPTWAALRA 704 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 81/258 (31%), Gaps = 58/258 (22%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIV--NDRFDNFLAR 58 +VG NK+ + + L+ + ++ +F +L Sbjct: 415 VVGRTTWNKLYEVYN-----DIANRLLSPSLRPGEYPGVLRNGSTGTAVRELQFYLYLMS 469 Query: 59 VDMGIDSDIPIISKETI--AQTEKAIAFYQD--------ILSRGGWPEL----------- 97 S IP +S + A TE A+ YQ I+ R W L Sbjct: 470 ---AYQSSIPSVSIDGRFGAATEAAVRAYQRFAGLTVDGIVGRKTWDSLYGKASALRSSG 526 Query: 98 ----------PIRPLHLGNSSVSV---QRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 P PL +G S +V L +R+ D S LS + +A Sbjct: 527 PVVTLKRLPYPGTPLTVGTDSSAVLYYTLLLQRIAYYYDSVASPALSSQYTQETANATAS 586 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 Q GL +G+ D+ T A+ L + L ++ G P Sbjct: 587 AQELLGLPATGVADAETWTAVEA--------LSLQLAAFTPNPDRHPGQ------GPDYP 632 Query: 205 LEAVENGKVGLRSTVIVG 222 A++ G VG +I G Sbjct: 633 DRAMKEGSVGADVRLIEG 650 >gi|148378207|ref|YP_001252748.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. ATCC 3502] gi|153930851|ref|YP_001382608.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. ATCC 19397] gi|153935278|ref|YP_001386160.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. Hall] gi|153939602|ref|YP_001389567.1| spore-cortex-lytic enzyme [Clostridium botulinum F str. Langeland] gi|170755801|ref|YP_001779835.1| spore-cortex-lytic enzyme [Clostridium botulinum B1 str. Okra] gi|170758560|ref|YP_001785532.1| spore-cortex-lytic enzyme [Clostridium botulinum A3 str. Loch Maree] gi|148287691|emb|CAL81756.1| spore cortex-lytic enzyme precursor [Clostridium botulinum A str. ATCC 3502] gi|152926895|gb|ABS32395.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. ATCC 19397] gi|152931192|gb|ABS36691.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. Hall] gi|152935498|gb|ABS40996.1| spore-cortex-lytic enzyme [Clostridium botulinum F str. Langeland] gi|169121013|gb|ACA44849.1| spore-cortex-lytic enzyme [Clostridium botulinum B1 str. Okra] gi|169405549|gb|ACA53960.1| spore-cortex-lytic enzyme [Clostridium botulinum A3 str. Loch Maree] gi|295317664|gb|ADF98041.1| spore-cortex-lytic enzyme [Clostridium botulinum F str. 230613] gi|322804472|emb|CBZ02022.1| spore cortex-lytic enzyme, lytic transglycosylase SleB [Clostridium botulinum H04402 065] Length = 231 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + +++ +L G + G+ F +AV+ FQ ++GL G++ TL A Sbjct: 43 GHRGDIISQVQRKLKAWGYY--NGGVDGIFGHQTYTAVRYFQSKNGLTVDGIIGDKTLVA 100 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + N + L G Sbjct: 101 LGINTGSSGSSSSSNNQDVMLLARLINGE 129 >gi|256059581|ref|ZP_05449780.1| hypothetical protein Bneo5_04410 [Brucella neotomae 5K33] gi|261323549|ref|ZP_05962746.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261299529|gb|EEY03026.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] Length = 244 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 113 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 170 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 171 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 196 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 197 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 225 >gi|288554519|ref|YP_003426454.1| putative spore cortex-lytic enzyme precursor [Bacillus pseudofirmus OF4] gi|288545679|gb|ADC49562.1| putative spore cortex-lytic enzyme precursor [Bacillus pseudofirmus OF4] Length = 207 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++S V+ L+++LI LD + + AV+ FQ GL G+ +T Sbjct: 31 LKQGDTSAEVEELQKQLIQLDYLDTDAT--GYYGPQTDQAVRNFQSDFGLVVDGLAGVAT 88 >gi|221309274|ref|ZP_03591121.1| hypothetical protein Bsubs1_07796 [Bacillus subtilis subsp. subtilis str. 168] gi|221318523|ref|ZP_03599817.1| hypothetical protein BsubsJ_07666 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322797|ref|ZP_03604091.1| hypothetical protein BsubsS_07777 [Bacillus subtilis subsp. subtilis str. SMY] Length = 159 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 12/154 (7%) Query: 211 GKVGLRSTVIVGRVDRQTPILHSRIN--RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + P L + + + + P P +I +++ + + Sbjct: 8 NSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLN 67 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N + K + V ++ +P +I + + + ++ +H T Sbjct: 68 NRVM----KTYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSKQH-YGIHGTNN 122 Query: 329 PILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 P + GC+R+ N +I+L + T Sbjct: 123 PASIGK---AVSKGCIRMHNKDVIELASIVPNGT 153 >gi|312142018|ref|YP_004009354.1| n-acetylmuramoyl-l-alanine amidase cwlm [Rhodococcus equi 103S] gi|325677534|ref|ZP_08157198.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus equi ATCC 33707] gi|311891357|emb|CBH50678.1| N-acetylmuramoyl-L-alanine amidase cwlM [Rhodococcus equi 103S] gi|325551781|gb|EGD21479.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus equi ATCC 33707] Length = 400 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 14/79 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDL--------------DPSKGLSVAFDAYVESAVKLFQM 147 L G+ +V +R L G L FD +++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLTGLGFLHNGVAETQRESVNGSHWVSPDAMFDHHLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAMN 166 + GL G+V +T ++ Sbjct: 64 QRGLLVDGIVGPATYRSLK 82 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 18/146 (12%) Query: 29 KPIHASVLDEIINESYHSIV---NDRFDNFLARVDMGIDSDIPII-----SKETIAQTEK 80 +H V + S + FD+ L ++ T ++ Sbjct: 24 GFLHNGVAETQRESVNGSHWVSPDAMFDHHLDSAVRAFQQQRGLLVDGIVGPATYRSLKE 83 Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 A Y+ + +R +L V L+ RL G + F Sbjct: 84 A--SYR-LGARTLIYQLSAPLY-----GDDVAALQTRLQDLGFYV--GRVDGYFGPKTHE 133 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMN 166 A+ FQ G+ G+ +TL ++ Sbjct: 134 ALSSFQREIGIAADGICGPATLRSLE 159 >gi|220926348|ref|YP_002501650.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219950955|gb|ACL61347.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 274 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 39/189 (20%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 R ++ +R + + V+++ A L V+ G R V VGR Sbjct: 106 PAFRWQRANPVFLRQEVAYGGRYEPGTVVIDPRARHLYLVQPGGQARRYGVGVGRQGFA- 164 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + IN P W P+ +I + L + L+ Sbjct: 165 WSGVATINSKQAWPDWYPPKEMIARQ--PDLARQVSQLQSG------------------- 203 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + + + +++ Y +H T EP R +SGC+R Sbjct: 204 ---------LGVPGGPRNPLGARAMYLWQNNKDTLYRIHGTTEPETIG---RSVSSGCIR 251 Query: 346 V--RNIIDL 352 + +++IDL Sbjct: 252 MINQDVIDL 260 >gi|304391767|ref|ZP_07373709.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] gi|303295996|gb|EFL90354.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] Length = 267 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 47/182 (25%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 R + Q +R + + ++V+ + L V +R V VG+ Sbjct: 111 AARAKLYQRTAVRYRTREKAGT----IIVDTGSKHLYHVLGNGRAMRYGVAVGKAG-FGW 165 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +RI R P W P S+I++ W Sbjct: 166 KGSARIKRKAKWPTWTPPASMIKRK----------------------------PHLAKWR 197 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + Q G N + + + R+ Y +H T P +SGCVR+ Sbjct: 198 NG--------QPGGPANPLGAAALYLYQGKRDTLYRIHGTNNPASIGT---ASSSGCVRL 246 Query: 347 RN 348 RN Sbjct: 247 RN 248 >gi|186682281|ref|YP_001865477.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464733|gb|ACC80534.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 155 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P+ L+ G+S ++V+ L+ L+ +G + + A E+AVK FQ + L G+V Sbjct: 89 PMPTLYFGSSGLAVRVLQRLLVANGYAVR---VDGIYGALTETAVKAFQNQQNLGTDGIV 145 Query: 158 DSSTLEAMNV 167 T A+ Sbjct: 146 GQRTWRALTT 155 >gi|303239802|ref|ZP_07326326.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2] gi|302592739|gb|EFL62463.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2] Length = 123 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 4/47 (8%) Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 + + + Y +H T +P + GCVR+ N Sbjct: 61 NPGGPFGARWLGLSIPSGGYGIHGTNDPSSIGK---AVSHGCVRMHN 104 >gi|282852054|ref|ZP_06261412.1| C-terminal processing peptidase [Lactobacillus gasseri 224-1] gi|282556814|gb|EFB62418.1| C-terminal processing peptidase [Lactobacillus gasseri 224-1] Length = 454 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G L ++ FD ++AV FQ H L G+V+ Sbjct: 365 LKRSMTGVDVATLQQYLTALGYLPK--HVTGVFDDETKNAVIKFQKEHDLTTDGIVNGQV 422 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V +++ L + L + M Sbjct: 423 QAQLYLAVAQKLQDDNPALKKALSLNLKDMED 454 >gi|116629567|ref|YP_814739.1| periplasmic protease [Lactobacillus gasseri ATCC 33323] gi|311110789|ref|ZP_07712186.1| carboxy- processing proteinase [Lactobacillus gasseri MV-22] gi|116095149|gb|ABJ60301.1| Periplasmic protease [Lactobacillus gasseri ATCC 33323] gi|311065943|gb|EFQ46283.1| carboxy- processing proteinase [Lactobacillus gasseri MV-22] Length = 482 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 2/92 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G L ++ FD ++AV FQ H L G+V+ Sbjct: 393 LKRSMTGVDVATLQQYLTALGYLPK--HVTGVFDDETKNAVIKFQKEHDLTTDGIVNGQV 450 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V +++ L + L + M Sbjct: 451 QAQLYLAVAQKLQDDNPALKKALSLNLKDMED 482 >gi|222084984|ref|YP_002543513.1| hypothetical protein Arad_1041 [Agrobacterium radiobacter K84] gi|221722432|gb|ACM25588.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 253 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 43/144 (29%), Gaps = 40/144 (27%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V +G R V VG+ + + R P W PR ++ ++ Sbjct: 131 LYLVMDGGQARRYGVGVGKPGFE-WAGAHTVTRKQEWPDWTPPREMVVRE---------- 179 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + R D G+ N + + + +H Sbjct: 180 -AAKGHY------------------------LPARMDGGEANPLGARAMYLG-STLYRIH 213 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T P + +SGC+R+RN Sbjct: 214 GTNAPWSIGS---AVSSGCIRLRN 234 >gi|302553721|ref|ZP_07306063.1| lipoprotein [Streptomyces viridochromogenes DSM 40736] gi|302471339|gb|EFL34432.1| lipoprotein [Streptomyces viridochromogenes DSM 40736] Length = 283 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 5/151 (3%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G++ V+ L+ RL L G + +D E AV FQ + GL +G Sbjct: 73 PARVLWSRGDTGRDVRELQARLRQVAWL--FDGPTGTYDDRTERAVSGFQGKRGLPRTGR 130 Query: 157 VDSSTLEAMNVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 D+ T + + R + + M R + ++ + +L + +G+ Sbjct: 131 TDTVTWQRLRGMTREPGRWDLYLMGGQPADPPDARCMTGRVLCIDKTSRTLRWMIDGRTV 190 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 V G T + + Sbjct: 191 STVAVRFGSQYTPTREGVFSVYWKSRDHVST 221 >gi|239981165|ref|ZP_04703689.1| hypothetical protein SalbJ_17134 [Streptomyces albus J1074] Length = 305 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + GGWP L G S +V ++ + G + + +AVK F Sbjct: 168 RGVDLGGGWPR-----LDPGASGATVVVVQRLMTQRG---HQLVADGQYGSVSVAAVKKF 219 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDL 171 Q GL G V +T + + + Sbjct: 220 QAAQGLVADGQVGPATWPKLVLTLRQ 245 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 45/161 (27%), Gaps = 30/161 (18%) Query: 16 VYLILPMGLSLVEK--PIHASVLDEIINESYH----SIVNDRFDNFLARVDMGIDSDIPI 69 V + G+ L + + D V + Sbjct: 162 VAFMAARGVDLGGGWPRLDPGASGATVVVVQRLMTQRGHQLVADGQYGSVSVAAV----- 216 Query: 70 ISKETIAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 K Q +++ G WP+L + L G+S V L+ L Sbjct: 217 ----------KKFQAAQGLVADGQVGPATWPKLVL-TLRQGSSGQQVSALQTALNRR--- 262 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +F + +AV+ +Q + L G T A+ Sbjct: 263 SAGLVVDGSFGSVTTTAVRAYQSLNRLVVDGEAGPVTWRAL 303 >gi|323705059|ref|ZP_08116635.1| NLP/P60 protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535485|gb|EGB25260.1| NLP/P60 protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 226 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V L++ L G + G+ F + +SAV Q R+GL P G+V +T Sbjct: 28 LKYGSKGQAVVSLQQTLNRLGY--STGGIDGIFGSKTKSAVIALQRRYGLSPDGIVGPAT 85 Query: 162 LEAMNVP 168 +N Sbjct: 86 EAVLNRT 92 >gi|326383899|ref|ZP_08205583.1| cell wall hydrolase/autolysin [Gordonia neofelifaecis NRRL B-59395] gi|326197358|gb|EGD54548.1| cell wall hydrolase/autolysin [Gordonia neofelifaecis NRRL B-59395] Length = 383 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 12/79 (15%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV------------AFDAYVESAVKLFQM 147 + L LG+ +V +R L G L + FD + AV+ FQ Sbjct: 2 QVLRLGDHGSAVAEIRAILATRGLLPAAPSTPPSTTHTPWSPPEAVFDQACDRAVRAFQQ 61 Query: 148 RHGLDPSGMVDSSTLEAMN 166 GL G+V +T A+ Sbjct: 62 ERGLIVDGLVGYATYTALR 80 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 24/158 (15%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA-----QTEKAIAFY 85 + + E + + P E + + +A Sbjct: 4 LRLGDHGSAVAEIRAILATRGLLPAAPSTP-PSTTHTPWSPPEAVFDQACDRAVRAFQQE 62 Query: 86 QDILSRG-----GWPELPIRPLHLG-----------NSSVSVQRLRERLIISGDLDPSKG 129 + ++ G + L LG + V L+ RL G Sbjct: 63 RGLIVDGLVGYATYTALREASYRLGARILLYRLSAPMTGDDVATLQSRLQNLGYYH--GL 120 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + F SAV L+Q +GL G+ STL ++ Sbjct: 121 VDGVFGEGTHSAVCLYQTEYGLSSDGICGPSTLRSLER 158 >gi|16078468|ref|NP_389287.1| murein transglycosylase [Bacillus subtilis subsp. subtilis str. 168] gi|81342402|sp|O34816|YKUD_BACSU RecName: Full=Putative L,D-transpeptidase YkuD; AltName: Full=Spore protein YkuD gi|2632225|emb|CAA10867.1| YkuD protein [Bacillus subtilis] gi|2633775|emb|CAB13277.1| murein transglycosylase [Bacillus subtilis subsp. subtilis str. 168] Length = 164 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 12/154 (7%) Query: 211 GKVGLRSTVIVGRVDRQTPILHSRIN--RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + P L + + + + P P +I +++ + + Sbjct: 13 NSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLN 72 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N + K + V ++ +P +I + + + ++ +H T Sbjct: 73 NRVM----KTYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSKQH-YGIHGTNN 127 Query: 329 PILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 P + GC+R+ N +I+L + T Sbjct: 128 PASIGK---AVSKGCIRMHNKDVIELASIVPNGT 158 >gi|150017149|ref|YP_001309403.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium beijerinckii NCIMB 8052] gi|149903614|gb|ABR34447.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium beijerinckii NCIMB 8052] Length = 230 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 13/84 (15%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNN 334 GK+ V + + I Y +H T +P + Sbjct: 67 ASGKQETPSPVGTWK-------VVRMAKWSGGFGTRWIGLNVPWGIYGIHGTNKPYSIGS 119 Query: 335 VVRFETSGCVRVRN--IIDLDVWL 356 + GC+R+RN I +L ++ Sbjct: 120 E---ASHGCIRMRNKDIEELYEYV 140 Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V ++ ++ G + L + ++ V F+ + L ++ Sbjct: 163 LKPGDRGADVLEVQRKMKEKGYYPKN--LDGIYGEGMKLYVIKFRKENNLKECHDINKEF 220 Query: 162 LEAMNVP 168 E + + Sbjct: 221 YEKLGIT 227 >gi|291545287|emb|CBL18396.1| Putative peptidoglycan binding domain [Ruminococcus sp. 18P13] Length = 272 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G V+ ++ +L+ G ++ AFD AV+ FQ+ + G+V Sbjct: 206 PTDTVKPGAEGEDVKWIQWQLVRQG---AELEITGAFDEDTRQAVQAFQIDRDMKADGIV 262 Query: 158 DSSTLEAMN 166 T E + Sbjct: 263 GEETREKLG 271 >gi|291298964|ref|YP_003510242.1| zinc D-Ala-D-Ala carboxypeptidase [Stackebrandtia nassauensis DSM 44728] gi|290568184|gb|ADD41149.1| Zinc D-Ala-D-Ala carboxypeptidase [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G V++L+ R ++G L F A ESAVK FQ +GL G+ Sbjct: 37 DRKLKKGMKGNDVKQLQIR--VAGYPGYGNILSLDGEFGARTESAVKRFQKAYGLAADGV 94 Query: 157 VDSSTLEAM 165 S T + Sbjct: 95 AGSRTFRKI 103 >gi|300856423|ref|YP_003781407.1| N-acetylmuramoyl-L-alanine amidase [Clostridium ljungdahlii DSM 13528] gi|300436538|gb|ADK16305.1| N-acetylmuramoyl-L-alanine amidase [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 98 PIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P P+ G +V+ ++E+L+ G G F AVK FQ +GL G Sbjct: 155 PGYPIRMNPGLEDSNVKAVQEKLMSRGYSVGRCGADGFFGWGTLEAVKSFQRDNGLAVDG 214 Query: 156 MVDSSTLEAM 165 +V +T + Sbjct: 215 IVGVNTWNKL 224 >gi|284041692|ref|YP_003392032.1| peptidoglycan-binding protein [Conexibacter woesei DSM 14684] gi|283945913|gb|ADB48657.1| Peptidoglycan-binding domain 1 protein [Conexibacter woesei DSM 14684] Length = 447 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ V++L+ L + F + A++ FQ RHGLD G+ Sbjct: 105 PRVALEKGDRGRQVKQLQRALGV--------HADGIFGPGTKKALRKFQARHGLDVDGVA 156 Query: 158 DSSTLEAMNV 167 S+T A+ Sbjct: 157 GSATWSALKR 166 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 18/38 (47%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F A++ FQ RHGLD G+V +T A+ Sbjct: 200 PADGVFGPQSIKALRKFQDRHGLDVDGVVGPATWSALK 237 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L+ L I F E+AVK +Q GL+ G+ +T +A+ + Sbjct: 257 GSGVAALQRALGI--------AADGEFGPGTEAAVKRYQASRGLEADGVAGPATRDALGL 308 Query: 168 PVDLRIR 174 ++ Sbjct: 309 GDGPVLK 315 >gi|255283883|ref|ZP_05348438.1| spore cortex-lytic enzyme SleC [Bryantella formatexigens DSM 14469] gi|255265604|gb|EET58809.1| spore cortex-lytic enzyme SleC [Bryantella formatexigens DSM 14469] Length = 413 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIIS--GD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S +V++++E+L L P + F E+AVK+FQ GL Sbjct: 328 PGYALRIGSSGDAVRQIQEQLNAISNNYPLIPKIAVDGIFGPATENAVKVFQSVFGLTQD 387 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 G+V T RI+ + V + RI +L Sbjct: 388 GIVGRRTWY--------RIQDIYVAVTRIAELYP 413 >gi|325926234|ref|ZP_08187591.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] gi|325543353|gb|EGD14779.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] Length = 343 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 L G V++L+ +L G + F + AV+ FQ HGL G Sbjct: 211 DGKLEQGERGEQVKQLQGQLAQLGAVGRDGKPLRADGDFGGNTKYAVEQFQREHGLQIDG 270 Query: 156 MVDSSTLEAMNV 167 + T A+ Sbjct: 271 VAGQQTQAALAK 282 >gi|296330534|ref|ZP_06873012.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674583|ref|YP_003866255.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage-related protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152216|gb|EFG93087.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412827|gb|ADM37946.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage-related protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 325 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 7/73 (9%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ G+ V+++++ L + G+ + +AVK FQ HGL Sbjct: 253 TSPMRKGD---DVRQIQKALAALYFYPDKGAKNNGIDGVYGPKTANAVKRFQSMHGLTAD 309 Query: 155 GMVDSSTLEAMNV 167 G+ T + Sbjct: 310 GIYGPKTKAKLEA 322 >gi|221313601|ref|ZP_03595406.1| hypothetical protein BsubsN3_07732 [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 167 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 12/154 (7%) Query: 211 GKVGLRSTVIVGRVDRQTPILHSRIN--RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + P L + + + + P P +I +++ + + Sbjct: 16 NSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLN 75 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N + K + V ++ +P +I + + + ++ +H T Sbjct: 76 NRVM----KTYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSKQH-YGIHGTNN 130 Query: 329 PILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 P + GC+R+ N +I+L + T Sbjct: 131 PASIGK---AVSKGCIRMHNKDVIELASIVPNGT 161 >gi|66768719|ref|YP_243481.1| hypothetical protein XC_2411 [Xanthomonas campestris pv. campestris str. 8004] gi|66574051|gb|AAY49461.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1264 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLI---ISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 P + L LG+ V+ L+ RL G + + E AV+ FQ Sbjct: 939 PPVSSEVEGLRLGDRGQEVEFLQYRLQQIDARGPNGQAVPQDGHYGPETEHAVRQFQQDQ 998 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 GL +G+ A++ R L+ Sbjct: 999 GLPATGVAGPDLDAALSQTQHARREALK 1026 >gi|153214514|ref|ZP_01949423.1| general secretion pathway protein A [Vibrio cholerae 1587] gi|124115316|gb|EAY34136.1| general secretion pathway protein A [Vibrio cholerae 1587] Length = 529 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFSLLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQKAPSLK 526 >gi|331271040|ref|YP_004385751.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum BKT015925] gi|329127432|gb|AEB77376.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum BKT015925] Length = 304 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V++L+ L G + F ++AV FQ + L G+V Sbjct: 168 SSGLLKIGSKEDKVKQLQANLNKLGYTCGNA--DGIFGQETKNAVISFQRNNELSADGIV 225 Query: 158 DSSTLEAMNVPVDLR 172 ST + ++ R Sbjct: 226 GQSTWNKILSNLEDR 240 >gi|303239381|ref|ZP_07325909.1| peptidase M14 carboxypeptidase A [Acetivibrio cellulolyticus CD2] gi|302593167|gb|EFL62887.1| peptidase M14 carboxypeptidase A [Acetivibrio cellulolyticus CD2] Length = 423 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L LG++ +V+ ++ L G + + + A+K FQ +GL P G+V Sbjct: 2 ETLTLGSTGPNVKLIQSLLNRIGY--NAGPVDGKLGLQTQQAIKAFQRNYGLVPDGVVGP 59 Query: 160 STLEAMNV 167 +T Sbjct: 60 ATWRIFER 67 >gi|251797379|ref|YP_003012110.1| spore cortex-lytic enzyme [Paenibacillus sp. JDR-2] gi|247545005|gb|ACT02024.1| spore cortex-lytic enzyme [Paenibacillus sp. JDR-2] Length = 264 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L +G+S V L+ RL G + + +F ++AV FQ + G+ G Sbjct: 33 TFSNATLTVGSSGSDVYELQGRLKYLGYY--NGAIDGSFGTKTKNAVTWFQWKFGMKSDG 90 Query: 156 MVDSST 161 +V + T Sbjct: 91 VVGAKT 96 >gi|302548169|ref|ZP_07300511.1| putative peptidoglycan binding domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302465787|gb|EFL28880.1| putative peptidoglycan binding domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length = 121 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL--DPSGM 156 L G+S V L+ RL+ D+ ++ +D + AV FQ+ +G+ D G+ Sbjct: 45 AGVLSQGDSGPQVSELQTRLLKIPDVYRDGQVNGRYDQTLTEAVARFQLWYGIRGDEDGV 104 Query: 157 VDSSTLEAMN 166 +T + Sbjct: 105 YGDATRRDLE 114 >gi|262404758|ref|ZP_06081313.1| general secretion pathway protein A [Vibrio sp. RC586] gi|262349790|gb|EEY98928.1| general secretion pathway protein A [Vibrio sp. RC586] Length = 529 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ E + + W R L G V L +L L + Sbjct: 420 LVGNERYRIARQWLEPLWRGQYSLLWQGGFSRTLKQGMRGADVALLESKLAQV--LGEPE 477 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 478 RPRELFDKDLARKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|27382640|ref|NP_774169.1| hypothetical protein bll7529 [Bradyrhizobium japonicum USDA 110] gi|27355812|dbj|BAC52794.1| bll7529 [Bradyrhizobium japonicum USDA 110] Length = 314 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 62/246 (25%), Gaps = 78/246 (31%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + RL G+ G +Q GL + Sbjct: 128 QPGYNDPR------RLPPMGEPQMQGG---------------YQQGAGLQQEAV------ 160 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 D R RQ + K ++V+ P L VE +R + VG Sbjct: 161 -------DPRQRQFDPKFEKQLVDYSGKESAGTIVVDTPNKFLYLVEGNGRAMRYGIGVG 213 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R T I P W P +I + Sbjct: 214 RPG-FTWSGVKAITAKREWPDWTPPAEMIARR---------------------------- 244 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 P+ + G N + + + +H + EP +SG Sbjct: 245 -----------PDLPRHMEGGPENPLGARAMYLG-STLYRIHGSNEPWTIGTN---VSSG 289 Query: 343 CVRVRN 348 C+R+RN Sbjct: 290 CIRMRN 295 >gi|148558107|ref|YP_001257237.1| hypothetical protein BOV_A0165 [Brucella ovis ATCC 25840] gi|148369392|gb|ABQ62264.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 313 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + R++R P W P +I ++ Sbjct: 182 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRVSRKAEWPTWTPPSEMIARE- 239 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 240 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 265 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 266 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 294 >gi|306840985|ref|ZP_07473726.1| Protein YBIS precursor [Brucella sp. BO2] gi|306289042|gb|EFM60307.1| Protein YBIS precursor [Brucella sp. BO2] Length = 208 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + R++R P W P +I ++ Sbjct: 77 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRVSRKAEWPTWTPPSEMIARE- 134 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 135 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 160 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 161 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 189 >gi|15893974|ref|NP_347323.1| spore cortex-lytic protein [Clostridium acetobutylicum ATCC 824] gi|15023563|gb|AAK78663.1|AE007583_10 Spore cortex-lytic enzyme prepeptide; peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325508100|gb|ADZ19736.1| Spore cortex-lytic enzyme prepeptide [Clostridium acetobutylicum EA 2018] Length = 234 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G++ V +++ +L G + + + +AVK FQ ++G+ P G Sbjct: 34 AVNAITYKYGSNGSGVIQIQTKLKNWGYY--TGKIDGVYGYQTYTAVKKFQTKNGILPDG 91 Query: 156 MVDSSTLEAMNVPVDLR 172 +V ++T A+ + Sbjct: 92 IVGTATSAALGMTTTQP 108 >gi|295702406|ref|YP_003595481.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium DSM 319] gi|294800065|gb|ADF37131.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium DSM 319] Length = 177 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 17/120 (14%) Query: 255 MMALLRQDPQYLKDNNIHMIDE--KGKEVFVEEVDW----NSPEPPNFIFRQDPG--KIN 306 ++ Y + + GK V + N + + G N Sbjct: 38 IINKKTNQLAYFHNGKLEKTYSVATGKTWSDTPVGFFKIVNKIKNRPYYTGHIAGGASNN 97 Query: 307 AMASTKIEFYS----RNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 + S + + + +H + + GCVR+ N +L + T Sbjct: 98 PLGSRWLGLNANGTTGDTYAIHGNNSEDSIGK---YVSHGCVRMHNADVEELFNKVAVGT 154 >gi|229527051|ref|ZP_04416446.1| general secretion pathway protein A [Vibrio cholerae 12129(1)] gi|229335448|gb|EEO00930.1| general secretion pathway protein A [Vibrio cholerae 12129(1)] gi|327484937|gb|AEA79344.1| General secretion pathway protein A [Vibrio cholerae LMA3894-4] Length = 529 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFSLLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQKAPSLK 526 >gi|118442933|ref|YP_877698.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium novyi NT] gi|118133389|gb|ABK60433.1| ErfK/YbiS/YcfS/YnhG family [Clostridium novyi NT] Length = 305 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 19/154 (12%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LG+ V+ L+ L G F + E A+ FQ ++ L+ G+ S Sbjct: 81 PLKLGSKGDDVKTLQNNLNKFGY---KIKADGVFGSSTEIAIYDFQKKNNLNRDGVAGES 137 Query: 161 TLEAMNV--------PVDLRIRQLQV------NLMRIKKLLEQKMGLRYVLVNIPAASLE 206 TL+ + + I + N + + Q +V N P + Sbjct: 138 TLKKLALEPTEKTMYNPKDDIFSPVISSNNFENFINKRNANSQTDYYIWVNTNTPKTYIF 197 Query: 207 --AVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 + K+ VGR T ++ Sbjct: 198 KGYNHHWKLIKSMPCTVGRSSSPTIKGTFKVGNK 231 >gi|308272301|emb|CBX28907.1| hypothetical protein N47_B20530 [uncultured Desulfobacterium sp.] Length = 262 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 72 KETIAQTEKAIA---FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ + + A+A + GG L G+ +V L+E L G Sbjct: 171 RKYLRMAKDALAVIDGMRVAADEGG----STVVLRRGSFGNAVGDLQELLRAKGY---DV 223 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + F E AV FQ GL+ G+V ++T A+ Sbjct: 224 TVDHDFGPATELAVMHFQKSTGLEKDGIVGNNTWTALR 261 >gi|189909412|gb|ACE60613.1| YkuD [Halobacillus aidingensis] Length = 164 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 11/135 (8%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P + +I P + P +I + ++ ++ + + ++ K + V + Sbjct: 34 PNMIFPGQQINI-PGFPNPDTIPYRIDVSTTKRRLRLYNNGSLE----KEFPIAVGRMLS 88 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +P FI + P + + ++ +H T P + GC+R+ N Sbjct: 89 ATPFGNFFIINKAPNPGGPYGTMWMSLSKQH-YGIHGTNNPSSIGK---AVSKGCIRMFN 144 Query: 349 --IIDLDVWLLKDTP 361 + +L + TP Sbjct: 145 KDVEELARTIPLGTP 159 >gi|327198296|ref|YP_004306871.1| gp27 [Burkholderia phage KS14] gi|310657259|gb|ADP02372.1| gp27 [Burkholderia phage KS14] Length = 268 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V L++RL +G + FD ESAV Q GL G+ T Sbjct: 5 LRKGDIGDEVLLLQKRLTRAGF---PVAETHVFDHDTESAVMTLQKARGLVIDGIAGPKT 61 Query: 162 LEAMNVPVDLR 172 + A+ R Sbjct: 62 MIALPGVALPR 72 >gi|306845502|ref|ZP_07478071.1| Protein YBIS precursor [Brucella sp. BO1] gi|306273823|gb|EFM55650.1| Protein YBIS precursor [Brucella sp. BO1] Length = 244 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + R++R P W P +I ++ Sbjct: 113 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRVSRKAEWPTWTPPSEMIARE- 170 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 171 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 196 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 197 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 225 >gi|15615884|ref|NP_244188.1| cell wall-binding protein [Bacillus halodurans C-125] gi|10175945|dbj|BAB07041.1| cell wall-binding protein [Bacillus halodurans C-125] Length = 311 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G S SV L++ L G LD + F E AVK FQ H L G+ T Sbjct: 41 LHEGVESESVTELQKLLETEGYLDDFEK--GVFHTETEEAVKQFQKDHELVVDGIAGPQT 98 Query: 162 LEAMNV----PVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 L A+ V + L+ L +K L E + +Y Sbjct: 99 LGALLVLREGDEHEVVVDLKAKLEELK-LFEGTLDQQYDE 137 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ +L L +D AV+ FQ + L G+ Sbjct: 104 VLREGDEHEVVVDLKAKLEEL--KLFEGTLDQQYDEDTTEAVREFQEKLDLQVDGVAGPE 161 Query: 161 TLEAM 165 T + Sbjct: 162 TFGEL 166 >gi|304393365|ref|ZP_07375293.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294372|gb|EFL88744.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 308 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 24/177 (13%) Query: 31 IHASVLDEIINESYHSIVND-------------RFDNFLARVDMGID-SDIPIISKETIA 76 + +D ++ E+ I + P +K Sbjct: 123 LGYGSVDALVAEARSGIAGQVELMVRYIERAKISDALRTCDWHRFARIYNGPAYAKHGYH 182 Query: 77 QTEKAIAF--YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A + + + L G+ V++L+++L +G + S F Sbjct: 183 TRMAAAHRRWMRKLATA---DTAERDVLKFGDRGPRVKQLQDQLKNAGYMVVS---DGIF 236 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP--VDLRIRQLQVNLMRIKKLLEQ 189 + ++ FQ +G SGMV + + + ++Q + + Sbjct: 237 GLDTDKELRNFQRDNGFAISGMVGHAEWAKLGGSTAIAAVVKQALPKVKVPRWWTSA 293 >gi|291533713|emb|CBL06826.1| Cell wall-associated hydrolases (invasion-associated proteins) [Megamonas hypermegale ART12/1] Length = 251 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L L + V L++ LI +S +D + AVK FQ H + +G+V+ T Sbjct: 32 LKLNSHGHDVIVLQQNLIRMNY--DLSKVSGNYDKETQEAVKAFQKDHKIKVTGIVNRET 89 Query: 162 LEAMNVPVDLRI 173 A+ I Sbjct: 90 WWAIKSGKQNVI 101 >gi|120404350|ref|YP_954179.1| peptidoglycan binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119957168|gb|ABM14173.1| Peptidoglycan-binding domain 1 protein [Mycobacterium vanbaalenii PYR-1] Length = 283 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 9/87 (10%) Query: 89 LSRGGWPELPIRP-------LHLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVES 140 ++ GG P P+ L+ G V L+ RL + F ES Sbjct: 191 VAGGGTPRPPVPVGEYADVLLYRGVRGPQVAELQRRLRYAYASYAGGLEIDGVFGPETES 250 Query: 141 AVKLFQMRH-GLDPSGMVDSSTLEAMN 166 AV+ FQ R GL G+V +T A+ Sbjct: 251 AVREFQRRTPGLKVDGVVGPATAAALR 277 >gi|297581069|ref|ZP_06942994.1| general secretion pathway protein A [Vibrio cholerae RC385] gi|297534895|gb|EFH73731.1| general secretion pathway protein A [Vibrio cholerae RC385] Length = 529 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + D W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWDGQFALLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|294791578|ref|ZP_06756726.1| LysM domain protein [Veillonella sp. 6_1_27] gi|294456808|gb|EFG25170.1| LysM domain protein [Veillonella sp. 6_1_27] Length = 189 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L S + + E AV+ FQ GL G V Sbjct: 11 AKTIDRGQRGHHVSKVQTMLKHQGFLHDS--IDGIYGHNTEQAVRKFQKSKGLPVDGRVG 68 Query: 159 SSTLEAMNV 167 +T+ A+ Sbjct: 69 PATMNALEK 77 >gi|294793432|ref|ZP_06758569.1| LysM domain protein [Veillonella sp. 3_1_44] gi|294455002|gb|EFG23374.1| LysM domain protein [Veillonella sp. 3_1_44] Length = 189 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L S + + E AV+ FQ GL G V Sbjct: 11 AKTIDRGQRGHHVSKVQTMLKHQGFLHDS--IDGIYGHNTEQAVRKFQKSKGLPVDGRVG 68 Query: 159 SSTLEAMNV 167 +T+ A+ Sbjct: 69 PATMNALEK 77 >gi|258620833|ref|ZP_05715867.1| General secretion pathway protein A [Vibrio mimicus VM573] gi|258586221|gb|EEW10936.1| General secretion pathway protein A [Vibrio mimicus VM573] Length = 455 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 2/109 (1%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ + + + W R L G V L +L L + Sbjct: 346 LVGDQRYRIARQWLEPLWRGQYSLLWQGGFSRTLKQGMQGDDVALLESKLSQV--LGEPE 403 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+V TL + + + L+ Sbjct: 404 RPRDQFDKDLSRKVELFQRWQNMQVDGIVGRQTLRRLELLTQQQAPSLK 452 >gi|269797668|ref|YP_003311568.1| 3D domain protein [Veillonella parvula DSM 2008] gi|269094297|gb|ACZ24288.1| 3D domain protein [Veillonella parvula DSM 2008] Length = 202 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 32/189 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L S + + E AV+ FQ GL G V Sbjct: 24 AKTIDRGQRGHHVSKVQTMLKNQGFLHDS--IDGIYGHNTEQAVRKFQKSKGLAVDGRVG 81 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 +T+ A+ + + + L + +Y V AS + Sbjct: 82 PATMNAL----EKMETRYGGH---GTALSHDGVPNKYSRVLTMQASA-----------YS 123 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 T I+ +IP Y++ + D+ G Sbjct: 124 AQDPGNGNYTATGSRLKKGIVSVDPKLIPL------------GTRLYIEGYGYAVADDVG 171 Query: 279 KEVFVEEVD 287 + +D Sbjct: 172 GAIKGHRID 180 >gi|33865533|ref|NP_897092.1| hypothetical protein SYNW0999 [Synechococcus sp. WH 8102] gi|33632702|emb|CAE07514.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 181 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 69/200 (34%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMG--LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 L+ + + + L E+ R +++ L +ENG + L V G Sbjct: 11 PLLQAASMDSVMEALASLPEELREQKDRQIVLLRGRRRLLLLENGNLRLAFPVATGMPGW 70 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP + + + P WV P + + + Sbjct: 71 ETPTGSFAVFQKIDQPVWVHPVTGERVE-------------------------------- 98 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEF----------YSRNNT--------YMHDTPE 328 + G N + S I F H TP Sbjct: 99 --------------EQGPDNPLGSHWIAFQRDCLGRDAHDGDRWITIKGCTTTGFHGTPH 144 Query: 329 PILFNNVVRFETSGCVRVRN 348 R + GCVR+ N Sbjct: 145 RWTVG---RAISHGCVRLYN 161 >gi|158319047|ref|YP_001511555.1| cell wall hydrolase/autolysin [Frankia sp. EAN1pec] gi|158114452|gb|ABW16649.1| cell wall hydrolase/autolysin [Frankia sp. EAN1pec] Length = 409 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 37/126 (29%), Gaps = 13/126 (10%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNS----- 107 D D + A + I+ + + LG+ Sbjct: 59 DAGNGGPVDATDQFDNELDNAVRAFQQSRGLSVDGIIGPDTFRAIEEARRRLGDRLLHYS 118 Query: 108 ------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 V L+ERL G F A +SAV+ FQ GLDP G+ T Sbjct: 119 VTHPFVGDDVAALQERLSNMGF--DVGRADGIFGARTDSAVRDFQRNRGLDPDGLCGPRT 176 Query: 162 LEAMNV 167 L + Sbjct: 177 LRELKR 182 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 36/103 (34%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLD---------------------------------- 125 + L LG+ SV R I G L Sbjct: 2 KLLRLGDRDPSVAEARAAFIHLGFLPVAPRQTDAADGPGPGALETSTATGTGPSPAGDAG 61 Query: 126 --PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + FD +++AV+ FQ GL G++ T A+ Sbjct: 62 NGGPVDATDQFDNELDNAVRAFQQSRGLSVDGIIGPDTFRAIE 104 >gi|251798289|ref|YP_003013020.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] gi|247545915|gb|ACT02934.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] Length = 212 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V+ L+ERL + + ++ F A +SAV FQ GL P G+ Sbjct: 25 SAASLKVGSKGTEVKDLQERLYMLDYYKGN--ITSYFSASTKSAVAAFQKGAGLKPDGVA 82 Query: 158 DSSTLEAMNVPVDLR 172 S TL A++ R Sbjct: 83 GSITLHALHKVTVDR 97 >gi|78223669|ref|YP_385416.1| peptidoglycan binding domain-containing protein [Geobacter metallireducens GS-15] gi|78194924|gb|ABB32691.1| Peptidoglycan-binding domain 1 [Geobacter metallireducens GS-15] Length = 562 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G S +V +L+E L +G +S +D + A++ FQ GLD G Sbjct: 456 PSRLKPGGRSKAVGQLQELLKGAGYYA--GRISGTYDTVTQEAIRSFQTAEGLDADGRTG 513 Query: 159 SSTL 162 TL Sbjct: 514 EKTL 517 >gi|188996891|ref|YP_001931142.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931958|gb|ACD66588.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 254 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 46/192 (23%) Query: 162 LEAMNVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRS 217 L+ N VD ++ + V + +KK L + V V++ L +E+G + Sbjct: 84 LKEANKSVDPFKVEKGTVITIPLKKKLPENFNYNTVYVSLKDKRLYYPIKLEDGDYVITF 143 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V G + TP I NP W++P S Sbjct: 144 PVGTGDEEYPTPTGEFAITEKKINPDWIVPPS---------------------------- 175 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 P G N + + + + ++ +H T + + Sbjct: 176 -----------ARANNPKLPPVVPFGSPENGLGTRALRL-NESSYMIHGTSKRSEKGVGM 223 Query: 337 RFETSGCVRVRN 348 + + GC+ +RN Sbjct: 224 K-ISYGCIVMRN 234 >gi|304436665|ref|ZP_07396634.1| endopeptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370361|gb|EFM24017.1| endopeptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 245 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ L +G K + F E AV FQ + + +G+V+++ Sbjct: 27 TLREGSHGHDVLVLQRALQNAGY--QIKSIDGNFGKETEHAVAAFQRDNKIKITGVVNNA 84 Query: 161 TLEAMNVPVDLR 172 T A+ R Sbjct: 85 TWRALRNAPAKR 96 >gi|271970428|ref|YP_003344624.1| hypothetical protein Sros_9263 [Streptosporangium roseum DSM 43021] gi|270513603|gb|ACZ91881.1| hypothetical protein Sros_9263 [Streptosporangium roseum DSM 43021] Length = 381 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 47/164 (28%), Gaps = 29/164 (17%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G+ + V+RL+ RL ++ + A + AV FQ GL V Sbjct: 41 GRTLRPGDYAKIVERLQRRLQELNF--SPGLVNGYYGAETQVAVWAFQKSQGLMAKDEVG 98 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS--LEAVENGKVGLR 216 T A+ P R V I L + + L Sbjct: 99 PETWRALAHP---------------HWAPPLVSAGRPRRVEIDLRRQLLTVYRHNRPMLI 143 Query: 217 STVIVG----------RVDRQTPILHSRINRIMFNPYWVIPRSI 250 S V G TP R+ + + P ++ Sbjct: 144 SHVSTGSGTYFCQYGNSSSALTPAGDFRVAQRERHRAEDPPATM 187 >gi|90423632|ref|YP_532002.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90105646|gb|ABD87683.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 408 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 68/221 (30%), Gaps = 55/221 (24%) Query: 150 GLDPSGMVD----SSTLEAMNVPVDLRIRQ---LQVNLMRIKKLLEQKMGLRYVLVNIPA 202 G P+G V TL A+ L NL R + K ++V+ P Sbjct: 180 GAAPNGAVGNDGRPVTLSALPPEEQPEADTNFELPPNLRRQEVAFPTKEPPGTLVVDTPN 239 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L V G +R V VGR D T +++R P W P +I++ Sbjct: 240 THLYYVLGGGRAIRYGVRVGR-DGFTWNGVQKVSRKAEWPDWHPPTEMIERQ-------- 290 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 P G N M + + S Y Sbjct: 291 -------------------------------PYLPRFMAGGPGNPMGARAMYLGS--TVY 317 Query: 323 -MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 +H T +P F +SGC+ + N + DL + T Sbjct: 318 RIHGTNQPSTIGK---FVSSGCIGMLNDDVSDLFDRVKVGT 355 >gi|260892380|ref|YP_003238477.1| ErfK/YbiS/YcfS/YnhG family protein [Ammonifex degensii KC4] gi|260864521|gb|ACX51627.1| ErfK/YbiS/YcfS/YnhG family protein [Ammonifex degensii KC4] Length = 206 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G+ V ++ L G +S FDA + AV+ FQ H L G VD Sbjct: 140 PRVLREGDCGSDVMEVQRVLRRQGFYS--GPISGRFDAQTKEAVRRFQQHHRLPSLGEVD 197 Query: 159 SSTLE 163 T E Sbjct: 198 EKTYE 202 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVV 336 GK V S + + + I Y +H T +P Sbjct: 52 GKAETPTPVGNWSVTRKAMNW------GSGFGTRWIGLDVPWGIYGLHGTNKPWSIG--- 102 Query: 337 RFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHI 368 R E+ GC+R+ R+I +L + TP I Sbjct: 103 RTESQGCIRMFNRDIEELYPRVRPGTPVIVVGKI 136 >gi|239906940|ref|YP_002953681.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfovibrio magneticus RS-1] gi|239796806|dbj|BAH75795.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfovibrio magneticus RS-1] Length = 229 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 46/167 (27%), Gaps = 42/167 (25%) Query: 187 LEQKMGLRYVLVNIPAASLEAVEN-----GKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + + V++ L EN + V V D + P + I F Sbjct: 80 YNARKNHYSIEVHLSQRKLFLYENLPDGSRHLARSYVVAVPGRDMEAPQGWGVVTGISFE 139 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P +++ + + P+Y Sbjct: 140 PSWR-PTPAMKERALKKGKPLPEY---------------------------------VGP 165 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 K N M KI +H P R TSGC+R+RN Sbjct: 166 GVKDNPMGPFKIILSHGYGFRIHGNNNPNSIG---RPVTSGCIRMRN 209 >gi|170741810|ref|YP_001770465.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168196084|gb|ACA18031.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 267 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 46/194 (23%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A P + R L R V+++ L V+ G LR + VG Sbjct: 107 AAGPEPEEGIGRVLDARYRRQVVPYSGAHRPGTVVIDTRERFLYLVQPGGQALRYGIGVG 166 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R T +++ P W P ++++ Sbjct: 167 RPG-FTWAGVKSVSQKREWPDWTPPPEMLRRR---------------------------- 197 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 P+ + G N + + + S +H T EP +SG Sbjct: 198 -----------PDLPRHMEGGPGNPLGARALYLGSS-LYRIHGTNEPHTIGQN---VSSG 242 Query: 343 CVRV--RNIIDLDV 354 C+R+ ++IDL Sbjct: 243 CIRMMNEDVIDLYD 256 >gi|27376579|ref|NP_768108.1| hypothetical protein blr1468 [Bradyrhizobium japonicum USDA 110] gi|27349720|dbj|BAC46733.1| blr1468 [Bradyrhizobium japonicum USDA 110] Length = 272 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 17/194 (8%) Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G ++ TL + + Q Q +Q V+ PA + + E+ ++ Sbjct: 35 GSANAQTLGYAPMQPQAYLPQPQA--------YQQDPSYSQGYVSEPAQTAD--EDAQLP 84 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 R V DR P I+ Y+V+ + + + R+ + + + Sbjct: 85 DRLRKQVVSFDRSEPAGTIVIDTGNTYLYYVLGNGRAIRYGVGVGREG---FTWSGVQSV 141 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 K + P G N + + + S +H T +P Sbjct: 142 SRKAEWPDWHPPAEMIARQPYLPRFVAGGPGNPLGARAMYLGSSE-YRIHGTNDPTTIGK 200 Query: 335 VVRFETSGCVRVRN 348 F +SGC+R+ N Sbjct: 201 ---FVSSGCIRMTN 211 >gi|296133960|ref|YP_003641207.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola sp. JR] gi|296032538|gb|ADG83306.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola potens JR] Length = 291 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 19/159 (11%) Query: 224 VDRQTPILH--SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN----IHMIDEK 277 R+T ++ + + + +K ++ YL++ + + Sbjct: 7 EGRRTRRFSCVLLALFLLCSLPGPVFATEAKKIIINKKVNKLAYLENGQVSKIFPVATGR 66 Query: 278 GKEVFVE---EVDWNSPEPPNFIFRQDPG-KINAMASTKIEF----YSRNNTYMHDTPEP 329 ++ E V P + G N + + + S +H T P Sbjct: 67 TPDLTPEGSFRVVRKVVNPYYNKLKIPGGSPRNPLGARWLGIDARGTSGGTYGIHGTNNP 126 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + + GC+R+ N + WL + TP + I Sbjct: 127 KSIGK---YASGGCIRMFNQDVI--WLYERTPIGTPVEI 160 >gi|237795719|ref|YP_002863271.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum Ba4 str. 657] gi|229262866|gb|ACQ53899.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum Ba4 str. 657] Length = 281 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 3/110 (2%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAI-AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR 115 + + P SK + + +SR G+ LP G + ++ Sbjct: 169 GKTASTTSNSEPSTSKPVQTNKKHPLINQLYAEMSRQGFNTLP--TCRQGARGNITKIIQ 226 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + LI G S G F + AVK FQ L G+V T + + Sbjct: 227 QMLINIGYPVGSFGADGVFGSGTVVAVKSFQRDCNLGADGIVGRETWKVL 276 >gi|319442206|ref|ZP_07991362.1| putative hydrolase [Corynebacterium variabile DSM 44702] Length = 396 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 12/80 (15%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQ 146 LG+ V +R L G +D G FD ++SA++ FQ Sbjct: 3 DEVYKLGDRGPRVAEVRGTLARLGFIDGFAGDATGEANQRWRPEDETFDEGLDSALRGFQ 62 Query: 147 MRHGLDPSGMVDSSTLEAMN 166 G+ G + TL A+ Sbjct: 63 QHRGIIADGHITEGTLRALR 82 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 25/115 (21%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRPLH--------LGNS------------SVSV 111 E + + ++ I++ G + L LG V Sbjct: 51 DEGLDSALRGFQQHRGIIADGH---ITEGTLRALREASYSLGARVLSLQGPGHYLVGDDV 107 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L+ L G + F AV +Q+ GL+P G+V +TL A++ Sbjct: 108 AELQGHLHDLGFFTSR--IDGHFGPMTHDAVAAYQLNAGLNPDGIVGPATLRALS 160 >gi|294853202|ref|ZP_06793874.1| hypothetical protein BAZG_02149 [Brucella sp. NVSL 07-0026] gi|294818857|gb|EFG35857.1| hypothetical protein BAZG_02149 [Brucella sp. NVSL 07-0026] Length = 313 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W +P +I ++ Sbjct: 182 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTLPSEMIARE- 239 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 240 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 265 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P + +SGC+R+RN Sbjct: 266 G-STLYRIHGTNQPWTIGKAM---SSGCIRMRN 294 >gi|294817680|ref|ZP_06776322.1| Peptidoglycan-binding domain 1 protein [Streptomyces clavuligerus ATCC 27064] gi|326446616|ref|ZP_08221350.1| peptidoglycan binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|294322495|gb|EFG04630.1| Peptidoglycan-binding domain 1 protein [Streptomyces clavuligerus ATCC 27064] Length = 345 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 8/77 (10%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L G +V L+ L G + + F + VK FQ L Sbjct: 62 WP-----VLRAGQKGANVSALQHLLNFRG---QTLTVDGDFGPTTTAKVKAFQQSQALTD 113 Query: 154 SGMVDSSTLEAMNVPVD 170 G+V + T A+ V Sbjct: 114 DGVVGADTWSALVTTVQ 130 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 10/118 (8%) Query: 70 ISKETIAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 T A+ + A Q + G W L + G+S +V+ + L G Sbjct: 94 FGPTTTAKVK-AFQQSQALTDDGVVGADTWSALVT-TVQSGSSGSAVRAAQTLLAARG-- 149 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 + + F A + V+ FQ G +G+VD++T A+ L L + Sbjct: 150 -QAVSVDGIFGADTAAKVRAFQQGAGQAVTGVVDTTTWLALLQETALDRVTLARQIRD 206 >gi|23100366|ref|NP_693833.1| hypothetical protein OB2911 [Oceanobacillus iheyensis HTE831] gi|22778599|dbj|BAC14867.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 1115 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 61/175 (34%), Gaps = 12/175 (6%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + E IA I + PL LGNS + L+E L G +S Sbjct: 644 QSHYGLLENGIADEVTIAKL---DNIFNHPLQLGNSHPDIITLKENLNHLGY--DGIAIS 698 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI----RQLQVNLMRIKKLL 187 F + E+ +K FQ +GL SG+ D TL A+ V+ R L + Sbjct: 699 DYFGNWTETRLKQFQEDNGLPVSGIADEITLAAIEEAVENRWIIEYTPYPTTLTQALSKQ 758 Query: 188 EQKMGLRYVLVNIPAA-SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 N+PA ++ + + V R P L S++ + N Sbjct: 759 MSVSPQTDAYRNLPAYVHSSYIDLTRTAAITGTSV--NLRTAPQLISKVAFNVGN 811 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 10/83 (12%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 E+ +A +++ LG+ ++ ++E+L G + F + Sbjct: 240 ERTLAKLEELA--------STDVFELGDRHNAIITIKEKLNAIGF--GGISETNYFGGWT 289 Query: 139 ESAVKLFQMRHGLDPSGMVDSST 161 E+ VK FQ +GL G V +T Sbjct: 290 ETRVKQFQQYYGLSVDGKVGPAT 312 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+ P G L+E+L G +S + + +S VK FQ +GL +G Sbjct: 457 EVYNSPFQAGKRHEDTIELKEKLNRLGY--GHITVSTLYGNFTKSQVKRFQREYGLVENG 514 Query: 156 MVDSSTL 162 + D +T Sbjct: 515 IADENTW 521 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 87 DILSRGGWPELPIR----PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I W +L LG+ + ++++L G + + + E+ V Sbjct: 514 GIADENTWIKLNEAYYNASFQLGDRHEDIIEIKKQLNAIGF--GGISETNYYGGWTETRV 571 Query: 143 KLFQMRHGLDPSGMVDSST 161 K FQ + L +G+VD +T Sbjct: 572 KQFQKYYHLTVTGIVDHTT 590 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 +A +++ LG+ ++ L+++L G + F + E+ Sbjct: 382 LAKLEELA--------STDVFELGDRHSAIILLKKKLNAVGF--DRISETDYFGGWTETR 431 Query: 142 VKLFQMRHGLDPSGMVDSST 161 V+ FQ + L+ +G D +T Sbjct: 432 VRQFQEYYNLNVTGKADEAT 451 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 18/147 (12%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT-------E 79 P E + E + + FD G ++ + +T Q + Sbjct: 112 ASLPYEKGDRHEDLVEIKEKLNHIGFDGITETDYFGNWTETRVTQFQTYYQLSITGKVDQ 171 Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 K I + P G + ++E+L G ++ F Y+E Sbjct: 172 KTINKLD---------SVYNSPFQNGKRHEDTKAIKEKLNSIGY--GPITVTTLFGNYME 220 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S VK FQ GL +G+ D TL + Sbjct: 221 SQVKEFQRDQGLRVNGIADERTLAKLE 247 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P G + ++E+L G ++ F Y+ES VK FQ GL +G Sbjct: 318 SVYNSPFQNGERHEDTKAIKEKLNSIGY--GPITVTTLFGDYMESQVKEFQRDQGLRVNG 375 Query: 156 MVDSSTLEAMN 166 + D TL + Sbjct: 376 IADGPTLAKLE 386 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P G ++E+L G +S + ++ E+ V+ FQ +GL +G Sbjct: 596 SVYNSPFQNGKRHDGTVEIKEKLNRIGF--GYITVSTLYGSFTETQVRKFQSHYGLLENG 653 Query: 156 MVDSSTLEAMN 166 + D T+ ++ Sbjct: 654 IADEVTIAKLD 664 >gi|297192181|ref|ZP_06909579.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces pristinaespiralis ATCC 25486] gi|197720174|gb|EDY64082.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces pristinaespiralis ATCC 25486] Length = 245 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G S V +L+ R+ SG + ++ +AVK FQ +GL G+ Sbjct: 39 SRTLSQGASGSDVTQLQIRM--SGYPGYGAVLAVDGSYGPATTAAVKRFQSAYGLAADGV 96 Query: 157 VDSSTLEAM 165 +T + Sbjct: 97 AGPATFSKI 105 >gi|304404060|ref|ZP_07385722.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus curdlanolyticus YK9] gi|304347038|gb|EFM12870.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus curdlanolyticus YK9] Length = 112 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%) Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 + + +H T EP V + GC+R+ N L Sbjct: 51 NPGGPFGVLWMGLSKPH-YGIHGTNEPASIGKV---VSHGCIRMYNNDVLA 97 >gi|269795813|ref|YP_003315268.1| membrane-fusion protein [Sanguibacter keddieii DSM 10542] gi|269097998|gb|ACZ22434.1| membrane-fusion protein [Sanguibacter keddieii DSM 10542] Length = 379 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + ELP R L +G+ V +L+E L G S + AV +Q GL Sbjct: 127 FGELPAYRELGVGDRGADVSQLKENLTALGYTGFSA--DDRYTQATSRAVSRWQKDVGLP 184 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQV 178 +G + + + PV + R ++V Sbjct: 185 QTGRLGPEQVTVVRGPVRVASRSVEV 210 >gi|148258201|ref|YP_001242786.1| hypothetical protein BBta_6995 [Bradyrhizobium sp. BTAi1] gi|146410374|gb|ABQ38880.1| hypothetical protein BBta_6995 [Bradyrhizobium sp. BTAi1] Length = 247 Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 49/181 (27%), Gaps = 44/181 (24%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 L L R L+ + ++++ L V G LR V VGR Sbjct: 59 TAQDEDSLLPDRLRRTIVNLDTREAPGTIIIDTGNTYLYYVLGGGRALRYGVGVGREG-F 117 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T I R P W P +I + Sbjct: 118 TWTGVQTITRKAEWPDWHPPAQMIARQ--------------------------------- 144 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 P G N + + + S +H T +P F +SGC+R+ Sbjct: 145 ------PYLPRFMAGGPGNPLGARAMYLGSSE-YRIHGTNDPTTIGK---FVSSGCIRLT 194 Query: 348 N 348 N Sbjct: 195 N 195 >gi|281418662|ref|ZP_06249681.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum JW20] gi|281407746|gb|EFB38005.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum JW20] Length = 423 Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V+ + L G P + + AV FQ +GL G+V Sbjct: 2 QVLRLGSVGPDVKLAQSLLNKIGY--PVGAVDGIYGTRTRQAVIAFQRNNGLVADGIVGP 59 Query: 160 STLEAMNV 167 +T Sbjct: 60 ATWSVFEQ 67 >gi|153868973|ref|ZP_01998687.1| Peptidoglycan-binding domain 1 [Beggiatoa sp. PS] gi|152074467|gb|EDN71319.1| Peptidoglycan-binding domain 1 [Beggiatoa sp. PS] Length = 281 Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDS 159 L LG+ V +L+E+L ++ +D + AV+ +Q + GL +G+ D Sbjct: 67 TLKLGDQGALVAKLQEKLTERKYY--QGKITGFYDENTQKAVRQYQTEYFGLPATGIADP 124 Query: 160 STLE 163 T + Sbjct: 125 LTFD 128 >gi|312111310|ref|YP_003989626.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y4.1MC1] gi|311216411|gb|ADP75015.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y4.1MC1] Length = 165 Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 RQ P + + + +H T P + + GC+R+ N +++L + Sbjct: 101 RQ-PNPGGPFGAIWLSLSKIH-YGIHGTNNPSSIGK---YVSKGCIRMHNKDVLELASLV 155 Query: 357 LKDTP 361 T Sbjct: 156 PNGTE 160 >gi|188582015|ref|YP_001925460.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179345513|gb|ACB80925.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 224 Score = 61.2 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 45/168 (26%), Gaps = 46/168 (27%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R ++V+ L ++ LR V VGR T + Sbjct: 82 RETVPYAGPYAPGTIVVSTAERRLYLIQPNGEALRYGVGVGRPG-FTWGGMQTVTMKREW 140 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 141 PDWRPPAEMLRRR---------------------------------------PDLPRYMK 161 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + + Y +H + EP +SGC+R+ N Sbjct: 162 GGIENPLGARAMYLGN--TIYRIHGSNEPETIGT---AVSSGCIRMTN 204 >gi|256003872|ref|ZP_05428859.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum DSM 2360] gi|255992210|gb|EEU02305.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum DSM 2360] gi|316939083|gb|ADU73117.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum DSM 1313] Length = 423 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V+ + L G P + + AV FQ +GL G+V Sbjct: 2 QVLRLGSVGPDVKLAQSLLNKIGY--PVGAVDGIYGTRTRQAVIAFQRNNGLVADGIVGP 59 Query: 160 STLEAMNV 167 +T Sbjct: 60 ATWSVFEQ 67 >gi|237756533|ref|ZP_04585060.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691307|gb|EEP60388.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 254 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 46/192 (23%) Query: 162 LEAMNVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRS 217 L+ N V+ ++ + V + +KK L + V V++ L +E+G + Sbjct: 84 LKEANKSVNPFKVEKGTVITIPLKKKLPENFNYNTVYVSLKDKRLYYPIKLEDGDYVITF 143 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V G + TP I NP W++P S Sbjct: 144 PVGTGDEEYPTPTGEFTITEKKVNPDWIVPPS---------------------------- 175 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 P G N + + + ++++ +H T + + Sbjct: 176 -----------ARANNPKLPPVVPFGSPENGLGTRALRL-NKSSYMIHGTSKRSEKGVGM 223 Query: 337 RFETSGCVRVRN 348 + + GCV +RN Sbjct: 224 K-ISYGCVVLRN 234 >gi|297204486|ref|ZP_06921883.1| serine/threonine protein kinase [Streptomyces sviceus ATCC 29083] gi|297148706|gb|EFH29085.1| serine/threonine protein kinase [Streptomyces sviceus ATCC 29083] Length = 562 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+S VQ+++ L G G+ F + ++AV+ FQ GLD G+V T Sbjct: 496 RLGDSGKRVQQVQCMLTERGYSVGGTGVDGEFGSGTQNAVRAFQNERGLDADGVVAHDTW 555 Query: 163 EAMN 166 A+ Sbjct: 556 VALR 559 >gi|23007283|ref|ZP_00049221.1| COG1376: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 64 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 9/70 (12%) Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 G + I+ + +H TPEP + GC+R+ N DL + Sbjct: 2 GAEQPVGIVWIDLSIP-SYGIHGTPEPEKVGKTE---SHGCIRLTNWDARDLAS---RTQ 54 Query: 361 PTWSRYHIEE 370 ++ Sbjct: 55 KGAKVEFLDN 64 >gi|295098253|emb|CBK87343.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 310 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 42/155 (27%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W + + Sbjct: 97 IVVNVAEMRLYYYPPGSNTVEVLPIGIGQAGRETPRNWVTAVERKQEGPTWSPTPNTRRA 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + E G N M + Sbjct: 157 -----------------------------------YAKEGKTLPAFVPAGPDNPMGLYAL 181 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 H T F +R + GC+R+RN Sbjct: 182 YIGRLYAI--HGTNSN--FGIGLR-VSQGCIRLRN 211 >gi|319649778|ref|ZP_08003931.1| hypothetical protein HMPREF1013_00535 [Bacillus sp. 2_A_57_CT2] gi|317398532|gb|EFV79217.1| hypothetical protein HMPREF1013_00535 [Bacillus sp. 2_A_57_CT2] Length = 165 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 10/116 (8%) Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI +++ ++ L + I + + V ++ +P I ++P Sbjct: 52 PDSIPYTIIVSRGKRSLTLLYNGAIQKVY----PIAVGKMLTQTPIGEFVIVNREPNPGG 107 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 + + +H T P + GC+R+ +++++L + T Sbjct: 108 PYGVMWLSLS-KAGYGIHGTNNPSSIGQS---VSQGCIRMYNQDVLELSRIVPNGT 159 >gi|160943094|ref|ZP_02090331.1| hypothetical protein FAEPRAM212_00573 [Faecalibacterium prausnitzii M21/2] gi|158445563|gb|EDP22566.1| hypothetical protein FAEPRAM212_00573 [Faecalibacterium prausnitzii M21/2] Length = 894 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 9/189 (4%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD---ILSRGGWP-ELPIRPLH 103 V+ F A + + QT Y + I S G P P PL Sbjct: 478 VDGVFGTATANAVRAFQRKYGLTVDGIVGQT-TWKELYDEFLSIQSDNGTPNAYPGTPLR 536 Query: 104 LGNSSVSVQRLR--ERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+S +V+ ++ ++ + S + F A +AV+ FQ GL G+V + Sbjct: 537 EGSSGQNVRLVQFWLKIARTVYTSLESVTVDGKFGAGTAAAVRRFQRYFGLTADGVVGRT 596 Query: 161 TLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T + + V D+ R L +L + + G V L + + + Sbjct: 597 TWQKLYEVYNDIANRLLSSSLRPGEYPGVLRSGSTGTAVRELQFYLYLMSAYESSIPPVS 656 Query: 220 IVGRVDRQT 228 I G+ T Sbjct: 657 IDGKFGADT 665 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL G+ +V L+ +L I+ D + F + + + V+ FQ + L Sbjct: 343 PGTPLRQGSRGAAVFTLQRQLNRITKDYPFLGKLTVDGVFGSRMAATVRAFQKQFNLTAD 402 Query: 155 GMVDSSTL 162 G+V T Sbjct: 403 GVVGRQTW 410 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 9/133 (6%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDILSRGGWPELPI 99 V+ +F A + + + +T +K Y DI +R L Sbjct: 560 SLESVTVDGKFGAGTAAAVRRFQRYFGLTADGVVGRTTWQKLYEVYNDIANRLLSSSLRP 619 Query: 100 R----PLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLD 152 L G++ +V+ L+ L + + P + F A E AV+ +Q GL Sbjct: 620 GEYPGVLRSGSTGTAVRELQFYLYLMSAYESSIPPVSIDGKFGADTERAVRAYQRFAGLT 679 Query: 153 PSGMVDSSTLEAM 165 G+V +T ++ Sbjct: 680 VDGVVGRTTWNSL 692 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---PS 127 S + +A+ LS G W + L G S +V++++ L D PS Sbjct: 419 SVKDLAELTSEGETSTGTLSNGTWND---TVLSTGASGSAVEQVQFWLNTLAQYDSAIPS 475 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F +AV+ FQ ++GL G+V +T + + Sbjct: 476 VKVDGVFGTATANAVRAFQRKYGLTVDGIVGQTTWKEL 513 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 39/178 (21%) Query: 26 LVEKPIHASVLDEIINESYHSIV--NDRFDNFLARVDMGIDSDIPIISKETI--AQTEKA 81 L+ + ++ +F +L +S IP +S + A TE+A Sbjct: 612 LLSSSLRPGEYPGVLRSGSTGTAVRELQFYLYLMS---AYESSIPPVSIDGKFGADTERA 668 Query: 82 IAFYQD--------ILSRGGWPEL---------------------PIRPLHLGNSSVSVQ 112 + YQ ++ R W L P PL +G+S +V Sbjct: 669 VRAYQRFAGLTVDGVVGRTTWNSLYGRASQLRSSGPVVTLKRLPYPGTPLTVGSSGETVL 728 Query: 113 ---RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L R+ + L+ + +A + Q GL+ +G+ D+ T A+ Sbjct: 729 YYNLLLLRIAYYFSSVEAPPLADRYTEETATATRSAQQLLGLEQTGIADADTWTAVEA 786 >gi|125974872|ref|YP_001038782.1| gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I. metallo peptidase. MEROPS family M14C [Clostridium thermocellum ATCC 27405] gi|125715097|gb|ABN53589.1| gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I, Metallo peptidase, MEROPS family M14C [Clostridium thermocellum ATCC 27405] Length = 423 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V+ + L G P + + AV FQ +GL G+V Sbjct: 2 QVLRLGSVGPDVKLAQSLLNKIGY--PVGAVDGIYGTRTRQAVIAFQRNNGLVADGIVGP 59 Query: 160 STLEAMNV 167 +T Sbjct: 60 ATWSVFEQ 67 >gi|297563684|ref|YP_003682658.1| peptidoglycan-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848132|gb|ADH70152.1| Peptidoglycan-binding domain 1 protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 245 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + P L G+S V ++ERL G G+ F + E AV Q G+ Sbjct: 43 SVSTGPELRQGSSGAGVSAVQERLAELGYW--IDGVDGQFGFHTEQAVVALQKAAGIARD 100 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G+V +T A+ V + Sbjct: 101 GVVGPATRAALAEGVLPEAQS 121 >gi|170744054|ref|YP_001772709.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168198328|gb|ACA20275.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 212 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 45/167 (26%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + G ++V+ L V G LR + VGR T I Sbjct: 70 RETVSYDGPYGAGTIVVSTAERRLYYVLGGGQALRYGIGVGRPG-FTWGGVQTITMKREW 128 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P +I++ P+ Sbjct: 129 PDWRPPSQMIRRR---------------------------------------PDLPRYMK 149 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP +SGC+R+ N Sbjct: 150 GGPENPLGARAMYLG-GTLYRIHGSNEPETIGT---AVSSGCIRMTN 192 >gi|15642441|ref|NP_232074.1| general secretion pathway protein A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227082566|ref|YP_002811117.1| general secretion pathway protein A [Vibrio cholerae M66-2] gi|229507495|ref|ZP_04397000.1| general secretion pathway protein A [Vibrio cholerae BX 330286] gi|229512310|ref|ZP_04401789.1| general secretion pathway protein A [Vibrio cholerae B33] gi|229519446|ref|ZP_04408889.1| general secretion pathway protein A [Vibrio cholerae RC9] gi|229607000|ref|YP_002877648.1| general secretion pathway protein A [Vibrio cholerae MJ-1236] gi|254849569|ref|ZP_05238919.1| general secretion pathway protein A [Vibrio cholerae MO10] gi|255746883|ref|ZP_05420828.1| general secretion pathway protein A [Vibrio cholera CIRS 101] gi|262162048|ref|ZP_06031064.1| general secretion pathway protein A [Vibrio cholerae INDRE 91/1] gi|298500197|ref|ZP_07010002.1| general secretion pathway protein A [Vibrio cholerae MAK 757] gi|9657021|gb|AAF95587.1| general secretion pathway protein A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227010454|gb|ACP06666.1| general secretion pathway protein A [Vibrio cholerae M66-2] gi|229344135|gb|EEO09110.1| general secretion pathway protein A [Vibrio cholerae RC9] gi|229352275|gb|EEO17216.1| general secretion pathway protein A [Vibrio cholerae B33] gi|229355000|gb|EEO19921.1| general secretion pathway protein A [Vibrio cholerae BX 330286] gi|229369655|gb|ACQ60078.1| general secretion pathway protein A [Vibrio cholerae MJ-1236] gi|254845274|gb|EET23688.1| general secretion pathway protein A [Vibrio cholerae MO10] gi|255735285|gb|EET90685.1| general secretion pathway protein A [Vibrio cholera CIRS 101] gi|262028297|gb|EEY46954.1| general secretion pathway protein A [Vibrio cholerae INDRE 91/1] gi|297540890|gb|EFH76944.1| general secretion pathway protein A [Vibrio cholerae MAK 757] Length = 529 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFSLLWQASFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|121730096|ref|ZP_01682499.1| general secretion pathway protein A [Vibrio cholerae V52] gi|147674552|ref|YP_001217947.1| general secretion pathway protein A [Vibrio cholerae O395] gi|262167277|ref|ZP_06034987.1| general secretion pathway protein A [Vibrio cholerae RC27] gi|121628153|gb|EAX60683.1| general secretion pathway protein A [Vibrio cholerae V52] gi|146316435|gb|ABQ20974.1| general secretion pathway protein A [Vibrio cholerae O395] gi|227014337|gb|ACP10547.1| general secretion pathway protein A [Vibrio cholerae O395] gi|262024252|gb|EEY42943.1| general secretion pathway protein A [Vibrio cholerae RC27] Length = 529 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFSLLWQASFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|218288979|ref|ZP_03493216.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] gi|218240804|gb|EED07982.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] Length = 719 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ +V++L+E L L + F ++AVK FQ++HG+ G+ T Sbjct: 619 LQLGSTGPAVKQLQEDLNKV--LGLHLAVDGVFGPATQAAVKSFQLQHGITVDGIYGPQT 676 Query: 162 LEAM 165 +AM Sbjct: 677 AQAM 680 >gi|331268987|ref|YP_004395479.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum BKT015925] gi|329125537|gb|AEB75482.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum BKT015925] Length = 307 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LG+ V+ L+++L G S F E+A+ FQ R+ L G+ S Sbjct: 83 PLKLGSRGNEVKTLQQKLNKFGYKINS---DGIFGDSTETAIYDFQKRNDLARDGIPGKS 139 Query: 161 TLEAMNVPVDLR 172 TL+ +++ + Sbjct: 140 TLKKLDLEPTEK 151 >gi|295400837|ref|ZP_06810813.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294977100|gb|EFG52702.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 165 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 RQ P + + + +H T P + + GC+R+ N +++L + Sbjct: 101 RQ-PNPGGPFGAIWLSLSKIH-YGIHGTNNPSSIGK---YVSKGCIRMHNKDVLELASLV 155 Query: 357 LKDTP 361 T Sbjct: 156 PNGTE 160 >gi|52142756|ref|YP_084072.1| spore cortex-lytic enzyme [Bacillus cereus E33L] gi|51976225|gb|AAU17775.1| spore cortex-lytic enzyme [Bacillus cereus E33L] Length = 253 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYDKSTANKGNSGGTAQENKPPQNKGKNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|325920553|ref|ZP_08182475.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] gi|325548946|gb|EGD19878.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] Length = 663 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISG---DLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGM 156 L G+ V L+ LI G + ++ +D E V+ FQ+ HG+ + +G+ Sbjct: 363 ALRPGDRGTEVLALQASLIQLGINARVKTPIEITGLYDQQTERGVQAFQLMHGMDEVNGI 422 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D +T A+ D I Q Sbjct: 423 ADRATRAAVQQHADDAIAQ 441 >gi|312971054|ref|ZP_07785233.1| peptidoglycan-binding domain 1 domain protein [Escherichia coli 1827-70] gi|310336815|gb|EFQ01982.1| peptidoglycan-binding domain 1 domain protein [Escherichia coli 1827-70] Length = 282 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 6/112 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDP 126 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDG 267 >gi|303231888|ref|ZP_07318597.1| 3D domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302513417|gb|EFL55450.1| 3D domain protein [Veillonella atypica ACS-049-V-Sch6] Length = 201 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G VQ+++ L+ G L+ S F E AV+ FQ GL G V ++T+ A Sbjct: 29 GQRGHHVQKIQTMLVHQGYLNDSA--DGIFGRNTELAVRKFQKAKGLAVDGRVGAATMSA 86 Query: 165 MNV 167 + Sbjct: 87 LEK 89 >gi|311029721|ref|ZP_07707811.1| hypothetical protein Bm3-1_04054 [Bacillus sp. m3-13] Length = 166 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 14/132 (10%) Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLK---DNNIHMIDEKGKEVFVEEVD-----WNS 290 + NP + P +I + P ++ N ++ G + + + + Sbjct: 32 ISNPNVIYPGQLIIIPGLPDANTIPYSIEISITNRKLVLKGNGIIIKTYPIAVGRMLFET 91 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RN 348 P I + P + + + + +H T +P + GCVR+ ++ Sbjct: 92 PVGNYVIVNRQPNPGGPFGAMWLSLS-KLSYGIHGTNDPSSIGK---AVSRGCVRMYNQD 147 Query: 349 IIDLDVWLLKDT 360 ++ L + T Sbjct: 148 VLQLASMVPNGT 159 >gi|167567988|ref|ZP_02360904.1| bacteriophage-acquired protein [Burkholderia oklahomensis EO147] Length = 270 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + + +L R Sbjct: 61 YKVLASGQRDPKHLTDADLAR 81 >gi|163855444|ref|YP_001629742.1| peptidoglycan binding-like domain-containing protein [Bordetella petrii DSM 12804] gi|163259172|emb|CAP41472.1| protein with peptidoglycan binding-like domain [Bordetella petrii] Length = 270 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 5/166 (3%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHL 104 + R + + P + A T A + I GG L + L Sbjct: 77 STEPGLRLTSARTTASEAAAAQTPGPAARHSAPTGAQAATLRAI---GGSGSL-TQELRY 132 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 S V+ L+ RL ++ L + F AV FQ +G +GMVD T + Sbjct: 133 RVKSPQVRELQVRLRLAKYLALY-DVDDRFGMLTREAVLKFQRDNGFRATGMVDQQTWDT 191 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + N + + + + Sbjct: 192 LLLRSRVPTEAELNNTDVGSWFTAPEQTGYMRELQHRLRQVGLYQG 237 >gi|294664257|ref|ZP_06729629.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605967|gb|EFF49246.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1268 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 10/153 (6%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-------LHLGNSSVSVQRLR 115 ++ P + ++ A + +P P L LG+ V+ L+ Sbjct: 901 AEAVAPPSASASVPSVGSAASTLTSREEALTQATVPTPPSFQEVEGLRLGDRGQEVEFLQ 960 Query: 116 ERLIIS---GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 RL G + + F E AVK FQ GL +G+ ++ R Sbjct: 961 YRLQQVDARGPDGQAVPQNGHFGPETEHAVKQFQQDQGLPATGIAGQDLDAVLSQAQHAR 1020 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 L+ + ++ G + V P Sbjct: 1021 RDGLKSTAPALANAAVEQGGEQQARVVTPQNEA 1053 >gi|167908454|ref|ZP_02495659.1| bacteriophage-acquired protein [Burkholderia pseudomallei NCTC 13177] Length = 270 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 3/113 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 + +L R L + + + + + +++G+ Sbjct: 61 YRVLASGQRDPKHLTDADLARAAATLGVSLACVRAVNEVESRGVGLLDDGRPK 113 >gi|167839687|ref|ZP_02466371.1| bacteriophage-acquired protein [Burkholderia thailandensis MSMB43] Length = 270 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +L R Sbjct: 61 YRVLASGQRDPKHLTDADLAR 81 >gi|332709864|ref|ZP_08429820.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332351235|gb|EGJ30819.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 393 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 62/225 (27%), Gaps = 15/225 (6%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ +V ++ +L G + + F E AV FQ +GL G+ Sbjct: 144 VTQSGLRRGSRGSAVTEVQRQLRQLGYF--NADPTGYFGPVTEQAVIEFQTDYGLRADGI 201 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 V S T ++ + + + + +I + + P E + Sbjct: 202 VGSQTRAELSNALVTQSQPFGLPPDQIPLPPADFNSQQPIAFGTPIRRSELRPGDRGPEV 261 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 + R V I +++ D Q L+ + Sbjct: 262 RRLQEELRSRGFNPGAIDGRYGEETEDAVFKFQIRNNNLLPTGIADLQTLQALGLI---- 317 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNT 321 + E E ++ N ++ + + Sbjct: 318 ---NINPEA------EKNRYVVVIPIPNDNVLSEVRNQMKLTGGI 353 >gi|150020444|ref|YP_001305798.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosipho melanesiensis BI429] gi|149792965|gb|ABR30413.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosipho melanesiensis BI429] Length = 415 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 16/140 (11%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E K+ + +G T + ++ N S + L + Sbjct: 240 EPDKIYAGMKLDIG-----TVQFTEGLTSVVVNLA----TSRLAVYYAKKLVKVFPVAIG 290 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 + M + ++D +I IN + + ++ + +H T + Sbjct: 291 RSDSMPPGIYWILDK-QIDPALYWFGEYIP--PRSPINGLGTRFLQLSNP-TYGIHGTTK 346 Query: 329 PILFNNVVRFETSGCVRVRN 348 P R + GCVR+ N Sbjct: 347 PWEIG---RRISHGCVRMFN 363 >gi|229524431|ref|ZP_04413836.1| general secretion pathway protein A [Vibrio cholerae bv. albensis VL426] gi|229338012|gb|EEO03029.1| general secretion pathway protein A [Vibrio cholerae bv. albensis VL426] Length = 529 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFALLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|254291645|ref|ZP_04962433.1| general secretion pathway protein A [Vibrio cholerae AM-19226] gi|150422417|gb|EDN14376.1| general secretion pathway protein A [Vibrio cholerae AM-19226] Length = 529 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFALLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|153831064|ref|ZP_01983731.1| general secretion pathway protein A [Vibrio cholerae 623-39] gi|148873460|gb|EDL71595.1| general secretion pathway protein A [Vibrio cholerae 623-39] Length = 529 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFALLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|56420887|ref|YP_148205.1| hypothetical protein GK2352 [Geobacillus kaustophilus HTA426] gi|56380729|dbj|BAD76637.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 168 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 11/109 (10%) Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD--PG-- 303 +I + L + + ++ E + + + +R+ PG Sbjct: 27 PLVIVNKAINKLALVRDGRIEAVYPVATGVNADLTPEGMFTVTVKAKYPYYRKKNIPGGA 86 Query: 304 KINAMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N + + I F +H T P + + GCVR+ N Sbjct: 87 PNNPLGARWIGFNARGTDGRIYGIHGTNNPASIGQ---YVSQGCVRMHN 132 >gi|323165397|gb|EFZ51184.1| peptidoglycan-binding domain 1 domain protein [Shigella sonnei 53G] Length = 282 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 6/112 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + S + S++N + ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQ--Y 217 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDP 126 A +++ + WP+L + L G S V LRE L +G LD Sbjct: 218 AAMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDG 267 >gi|297624717|ref|YP_003706151.1| peptidoglycan-binding domain 1 protein [Truepera radiovictrix DSM 17093] gi|297165897|gb|ADI15608.1| Peptidoglycan-binding domain 1 protein [Truepera radiovictrix DSM 17093] Length = 336 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLI-ISGDLDPSKGLSVAFDAYVESAVKLF 145 ++ W L + G+++ +V+ ++++L G + + F E+AVK F Sbjct: 101 GVVGPSTWGALIT-VVRRGDNNNAVRAVQDQLANRYGY---ALAVDGVFGPATEAAVKSF 156 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPV 169 Q GL G+V ST A+ V Sbjct: 157 QASWGLAQDGVVGPSTWNALVTNV 180 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 ++ + WP + G++ +V ++ L G + + +F + ESAV+ FQ Sbjct: 41 ELGPQATWPTV-----RRGDAGRTVVTVQYLLRHHG---GNLSVDGSFGSATESAVRSFQ 92 Query: 147 MRHGLDPSGMVDSSTLEAMNV 167 L G+V ST A+ Sbjct: 93 SARNLTVDGVVGPSTWGALIT 113 >gi|153803634|ref|ZP_01958220.1| general secretion pathway protein A [Vibrio cholerae MZO-3] gi|124120834|gb|EAY39577.1| general secretion pathway protein A [Vibrio cholerae MZO-3] Length = 529 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFALLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|229820604|ref|YP_002882130.1| SCP-like extracellular [Beutenbergia cavernae DSM 12333] gi|229566517|gb|ACQ80368.1| SCP-like extracellular [Beutenbergia cavernae DSM 12333] Length = 349 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 LP L +G S V+RL+ L G + A+ + V FQ + GL G+ Sbjct: 187 LPPGWLGIGASGPDVERLQADLAALG---HDVAVDGAYGPRTSAGVSAFQQQAGLAVDGV 243 Query: 157 VDSSTLE 163 +TLE Sbjct: 244 AGPATLE 250 >gi|209886508|ref|YP_002290365.1| ErfK/YbiS/YcfS/YnhG family protein [Oligotropha carboxidovorans OM5] gi|209874704|gb|ACI94500.1| ErfK/YbiS/YcfS/YnhG family protein [Oligotropha carboxidovorans OM5] Length = 265 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 56/203 (27%), Gaps = 52/203 (25%) Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 G+ P + T+ R+R+ VN + ++V+ L Sbjct: 61 AWGVQPDAVQSRDTMSEDAALP-DRLRRAVVN-------YPSREAPGTLIVDTRHTYLYF 112 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 + +R V VGR T I+R P W P +I + Sbjct: 113 ILGNDRAIRYGVGVGREG-FTWSGVQSISRKAEWPDWHPPAQMIARQ------------- 158 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 P G N + + + + +H T Sbjct: 159 --------------------------PYLPRFVAGGPGNPLGARAMYLGHSD-YRIHGTN 191 Query: 328 EPILFNNVVRFETSGCVRVRNII 350 +P F +SGC+R+ N Sbjct: 192 DPSTIGK---FVSSGCIRLTNAD 211 >gi|134288769|ref|YP_001111074.1| gp43, bacteriophage-acquired protein [Burkholderia phage phiE202] gi|167619956|ref|ZP_02388587.1| bacteriophage-acquired protein [Burkholderia thailandensis Bt4] gi|134131982|gb|ABO60730.1| gp43, bacteriophage-acquired protein [Burkholderia phage phiE202] Length = 270 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +L R Sbjct: 61 YRVLASGQRDPKHLTDADLAR 81 >gi|118593452|ref|ZP_01550832.1| hypothetical protein SIAM614_16872 [Stappia aggregata IAM 12614] gi|118433931|gb|EAV40589.1| hypothetical protein SIAM614_16872 [Stappia aggregata IAM 12614] Length = 173 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 282 FVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 + + P+ G N M + + N +H T P R + Sbjct: 90 DWAPSEEVRRDFPHLPTVIRGGAPNNPMGVAAMTLSNGN-YAIHGTNRPGSIG---RAVS 145 Query: 341 SGCVRVRN 348 GC+R+ N Sbjct: 146 YGCIRMAN 153 >gi|118443217|ref|YP_877472.1| spore-cortex-lytic enzyme precursor [Clostridium novyi NT] gi|118133673|gb|ABK60717.1| spore-cortex-lytic enzyme precursor [Clostridium novyi NT] Length = 241 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G+ + V ++ RL L + AVK FQ ++GL G Sbjct: 34 SMKTSVYKYGSKNNIVTEIQRRLKAWDYY--EGALDGKYGYETYLAVKDFQRKNGLTVDG 91 Query: 156 MVDSSTLEAMNVP 168 +V STL A+ + Sbjct: 92 IVGDSTLSALGIN 104 >gi|295703434|ref|YP_003596509.1| hypothetical protein BMD_1298 [Bacillus megaterium DSM 319] gi|294801093|gb|ADF38159.1| conserved hypothetical protein [Bacillus megaterium DSM 319] Length = 170 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 51/164 (31%), Gaps = 17/164 (10%) Query: 206 EAVENGKVGLRSTVIVGRV---DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 V+ G+ + S + + +IP ++ K+++ Sbjct: 3 YIVKRGETWQSISGDYRTPVEDLWMANPFVSH-STLKPGQVIIIP-NLPDKELIPYTIHV 60 Query: 263 PQYLKDNNIHMIDEK----GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 ++ + + + + ++ +P I ++P + + + Sbjct: 61 --FIAEKQLELRRNNIIQKVYPIAAGKMLSATPTGDFVIVNREPNPGGPFGTMWLSLS-K 117 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 + +H T +P + GC+R+ N +L + T Sbjct: 118 KSYGIHGTNDPSSIGK---AVSKGCIRMYNAQVNELAQIVPNGT 158 >gi|53722098|ref|YP_111083.1| bacteriophage-acquired protein [Burkholderia pseudomallei K96243] gi|134288699|ref|YP_001111195.1| gp45, bacteriophage-acquired protein [Burkholderia phage phiE12-2] gi|167821706|ref|ZP_02453386.1| bacteriophage-acquired protein [Burkholderia pseudomallei 91] gi|167914793|ref|ZP_02501884.1| bacteriophage-acquired protein [Burkholderia pseudomallei 112] gi|52212512|emb|CAH38538.1| putative bacteriophage-acquired protein [Burkholderia pseudomallei K96243] gi|134132084|gb|ABO60759.1| gp45, bacteriophage-acquired protein [Burkholderia phage phiE12-2] Length = 270 Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +L R Sbjct: 61 YRVLASGQRDPKHLTDADLAR 81 >gi|253682164|ref|ZP_04862961.1| spore cortex-lytic enzyme [Clostridium botulinum D str. 1873] gi|253561876|gb|EES91328.1| spore cortex-lytic enzyme [Clostridium botulinum D str. 1873] Length = 238 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G V ++ RL + L + AVK FQ ++ L G Sbjct: 34 AVKTSVYKYGTKDSIVTEIQRRLKAWDYY--NGELDGKYGYETYLAVKEFQRKNDLTVDG 91 Query: 156 MVDSSTLEAMNVP 168 +V TL A+ + Sbjct: 92 IVGDYTLAALGIN 104 >gi|153956184|ref|YP_001396949.1| spore cortex-lytic enzyme precursor [Clostridium kluyveri DSM 555] gi|219856509|ref|YP_002473631.1| hypothetical protein CKR_3166 [Clostridium kluyveri NBRC 12016] gi|146349042|gb|EDK35578.1| Spore cortex-lytic enzyme precursor [Clostridium kluyveri DSM 555] gi|219570233|dbj|BAH08217.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V +++ +L G + + + +AV+ FQ ++GL+ G+V +TL A Sbjct: 44 GSRGDVVIKIQTKLRDWGYY--NGSVDGIYGYQTYTAVRYFQSKNGLNVDGVVGDATLSA 101 Query: 165 MNVPVD 170 + + V Sbjct: 102 LAINVS 107 >gi|42519030|ref|NP_964960.1| hypothetical protein LJ1104 [Lactobacillus johnsonii NCC 533] gi|41583317|gb|AAS08926.1| hypothetical protein LJ_1104 [Lactobacillus johnsonii NCC 533] Length = 483 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G + ++ F+ ++AV FQ HGL G+V+ Sbjct: 394 LKKSMTGVDVATLQQYLTALGYMPK--HVTGVFNDETKNAVIEFQKAHGLTADGIVNGQV 451 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + V +++ L + L ++M Sbjct: 452 QAQLYLAVAQKLQDDNPALKKAMSLNLKEMED 483 >gi|220929205|ref|YP_002506114.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulolyticum H10] gi|219999533|gb|ACL76134.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulolyticum H10] Length = 236 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 88 ILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 ++ G + L G+ V ++ERL G + S ++ ++ A+ F Sbjct: 153 VIRNGPFGPFGTGFRNLKPGDRGSDVLAVQERLKQLGYF--NGYESGIYEDDLKEAIFQF 210 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q H L + + AM Sbjct: 211 QKDHNLKVKITITTVDYNAMGYT 233 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%) Query: 308 MASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN 348 + R +H T + R + GC+R+ N Sbjct: 98 FGGRWLGLNVRWGNYGIHGTQDESSIG---RSASHGCIRMYN 136 >gi|254193147|ref|ZP_04899582.1| putative peptidoglycan binding domain [Burkholderia pseudomallei S13] gi|254196637|ref|ZP_04903061.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei S13] gi|254197135|ref|ZP_04903558.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei S13] gi|169649901|gb|EDS82594.1| putative peptidoglycan binding domain [Burkholderia pseudomallei S13] gi|169653380|gb|EDS86073.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei S13] gi|169653877|gb|EDS86570.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei S13] Length = 270 Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +L R Sbjct: 61 YRVLASGQRDPKHLTDADLAR 81 >gi|229514071|ref|ZP_04403533.1| general secretion pathway protein A [Vibrio cholerae TMA 21] gi|229349252|gb|EEO14209.1| general secretion pathway protein A [Vibrio cholerae TMA 21] Length = 529 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFSLLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|229521273|ref|ZP_04410693.1| general secretion pathway protein A [Vibrio cholerae TM 11079-80] gi|229341805|gb|EEO06807.1| general secretion pathway protein A [Vibrio cholerae TM 11079-80] Length = 529 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 424 ERYRIARQWLEPLWNGQFSLLWQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 482 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|226227862|ref|YP_002761968.1| hypothetical protein GAU_2456 [Gemmatimonas aurantiaca T-27] gi|226091053|dbj|BAH39498.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 282 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 64/224 (28%), Gaps = 43/224 (19%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 ++ + L+A LR + Y++V+I + + V Sbjct: 51 IEQAVLQAGAGTDSLRAELAEST------PPPASANAPYLVVSIAERRVWYKQGDSVLFT 104 Query: 217 STVIVGRVDRQ------------TPILHSRINRIMFNPYWVIP-------RSIIQKDMMA 257 + V G + TP + R P W+ P + ++ Sbjct: 105 APVATGSGKQMVVKGSTKVMRFETPRGRLVVQRRDSAPAWIPPDWHFQEQANKRGMGLVQ 164 Query: 258 LLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPP----NFIFRQDPGKIN---- 306 L+R P LKD + + + + + P N Sbjct: 165 LVRGTPIKLKDGSSIAVRGNDVVRVGSDGSAKPLTASDGREIVADGRVVIPPFGTNQRKY 224 Query: 307 --AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + ++ + +H T P + GCVR+RN Sbjct: 225 PDVLGTRRLYL--GDGYALHGTNNPKSVGQ---AVSHGCVRLRN 263 >gi|326332132|ref|ZP_08198416.1| peptidoglycan binding domain-containing protein [Nocardioidaceae bacterium Broad-1] gi|325950103|gb|EGD42159.1| peptidoglycan binding domain-containing protein [Nocardioidaceae bacterium Broad-1] Length = 289 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 5/134 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE- 163 G+S V+ L+ RL G + G++ + AV FQ + G+ +G VD +TL+ Sbjct: 85 GDSGDDVRDLQARLKQIGWF--NAGVTGFYGNVTTEAVSGFQAKRGIAVTGFVDQTTLDR 142 Query: 164 --AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 AM + KL + + R + ++ + L V G V + V Sbjct: 143 LHAMTREPTEAELTNAPPPVPAGKLDPRCLTGRVMCIDKSTSMLRWVVGGAVQMSVEVRF 202 Query: 222 GRVDRQTPILHSRI 235 G + T + Sbjct: 203 GSQELPTREGQFSV 216 >gi|317509441|ref|ZP_07967059.1| N-acetylmuramoyl-L-alanine amidase [Segniliparus rugosus ATCC BAA-974] gi|316252270|gb|EFV11722.1| N-acetylmuramoyl-L-alanine amidase [Segniliparus rugosus ATCC BAA-974] Length = 409 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 29/137 (21%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSV----------------------------A 133 L G+ V +R L G L G + Sbjct: 4 LRRGDIGPEVIAVRAVLEELGFLHSRNGSANPNLASATAARTEFGSVASANGSETKVEAL 63 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FDA ++ AV+ FQ G+ G+V +T R+ + ++ + Sbjct: 64 FDAELDLAVRAFQQHRGMLVDGIVGPAT-SQCLREASFRLGARVTSYQPSAPMVGDDVAD 122 Query: 194 RYVLVNIPAASLEAVEN 210 ++ + V+ Sbjct: 123 LQARLHDLGFYMGLVDG 139 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + F + + +Q GL P G+ +TL ++ Sbjct: 115 MVGDDVADLQARLHDLGFYM--GLVDGYFGPKTHNGLVSYQREFGLTPDGICGPATLRSL 172 Query: 166 N 166 N Sbjct: 173 N 173 >gi|330839278|ref|YP_004413858.1| 3D domain-containing protein [Selenomonas sputigena ATCC 35185] gi|329747042|gb|AEC00399.1| 3D domain-containing protein [Selenomonas sputigena ATCC 35185] Length = 200 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SV+ +++ LI G L +A+ FQ +GL+ G+ T Sbjct: 30 KEGMRGDSVRAVQKLLIGRGYL-AEGEDDGVCGKKTVTAITKFQQENGLEVDGICGQMTY 88 Query: 163 EAMNVPVDLRI 173 A++ + + Sbjct: 89 RALSGGEEPPV 99 >gi|260886933|ref|ZP_05898196.1| LysM domain protein [Selenomonas sputigena ATCC 35185] gi|260862995|gb|EEX77495.1| LysM domain protein [Selenomonas sputigena ATCC 35185] Length = 196 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SV+ +++ LI G L +A+ FQ +GL+ G+ T Sbjct: 26 KEGMRGDSVRAVQKLLIGRGYL-AEGEDDGVCGKKTVTAITKFQQENGLEVDGICGQMTY 84 Query: 163 EAMNVPVDLRI 173 A++ + + Sbjct: 85 RALSGGEEPPV 95 >gi|153007400|ref|YP_001368615.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151559288|gb|ABS12786.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 241 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR + +G+ + Sbjct: 80 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHLLYYVLPGGEALRYGIGIGKAGFE- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 139 WSGTANVQYKKQWPVWTPPPEMIQR----------------------------------- 163 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRN--NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + F + +H +PE + +SGC+R Sbjct: 164 -KPELAKYRNGQEPGPQNPLGARALYIFQNGQDTGYRIHGSPEWWSIGQSM---SSGCIR 219 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 220 LMNQDIIDLYNRVQGKAP 237 >gi|84496825|ref|ZP_00995679.1| hypothetical protein JNB_04860 [Janibacter sp. HTCC2649] gi|84383593|gb|EAP99474.1| hypothetical protein JNB_04860 [Janibacter sp. HTCC2649] Length = 340 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 3/84 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I P + + G + V ++ L G S + F + VK FQ Sbjct: 199 KIGGTTPAPTIAWSTVKSGATGFRVTTIQHLLKARG---QSLTVDGVFGSVTVGKVKAFQ 255 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVD 170 L G+V T A+ V V Sbjct: 256 TSRSLLADGVVGPKTWAALVVTVK 279 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 9/93 (9%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 KA + +L+ G W L + + G+S +V ++ L G + F Sbjct: 252 KAFQTSRSLLADGVVGPKTWAALVV-TVKSGSSGQAVIGAQKALTARGY---TCTADGVF 307 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + S K FQ GL G+V T + + Sbjct: 308 GSVTVSKAKAFQTSRGLLADGVVGPVTWAKLTI 340 >gi|254713367|ref|ZP_05175178.1| ErfK/YbiS/YcfS/YnhG [Brucella ceti M644/93/1] gi|254716275|ref|ZP_05178086.1| ErfK/YbiS/YcfS/YnhG [Brucella ceti M13/05/1] gi|261218053|ref|ZP_05932334.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261321097|ref|ZP_05960294.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|260923142|gb|EEX89710.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261293787|gb|EEX97283.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] Length = 241 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 80 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPGGEALRYGVGIGKAGFE- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 139 WQGRANVEYKKQWPRWTPPPEMIQR----------------------------------- 163 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + Y +H +PE + +SGC+R Sbjct: 164 -KPELEKYRNGQEPGPSNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 219 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 220 LMNQDIIDLYNRVQGKAP 237 >gi|323136177|ref|ZP_08071259.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322398251|gb|EFY00771.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 185 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 46/170 (27%), Gaps = 44/170 (25%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++++ L V V + V V + ++ + I+ + NP W Sbjct: 45 FATDVEPGAIVISASQRRLFYVVGNGVAISYPVAVPKRGKE-WSGVTSISSMHVNPDWTP 103 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KI 305 P ++ + P G Sbjct: 104 PAAV---------------------------------------KADHPELPDLIPGGAPN 124 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N M + + +H T + + + GC+R+RN D+ Sbjct: 125 NPMGTRAMLLDRSE-VAIHGTTNKMRASIGT-AASYGCIRMRN-EDVADL 171 >gi|295104692|emb|CBL02236.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii SL3/3] Length = 870 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 4/143 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLR--ERLIISGDLD-PSKGLSVAFDAYVESAVKLFQ 146 G P PL G S +V+ ++ ++ + S + F A +AV+ FQ Sbjct: 499 DNGTPNAYPGTPLREGASGQNVRLVQFWLKIARTVYTSLESVTVDGKFGAGTAAAVRRFQ 558 Query: 147 MRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 GL G+V +T + + V D+ R L +L + + G V L Sbjct: 559 RYFGLTADGVVGRTTWQKLYEVYNDIANRLLSSSLRPGEYPGVLRSGSTGTPVRELQFYL 618 Query: 206 EAVENGKVGLRSTVIVGRVDRQT 228 + + + I G+ T Sbjct: 619 YLMSAYESSIPPVSIDGKFGADT 641 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---PS 127 S + +A+ LS G W L G S +V++++ L D PS Sbjct: 395 SVKDLAELTSEGETSTGTLSNGTWN---GTVLSTGASGSAVEQVQFWLNTLAQYDSAIPS 451 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + +AV+ FQ ++GL G+V +T + + Sbjct: 452 VTVDGVYGTATANAVRAFQRKYGLTVDGIVGQTTWKEL 489 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL G+ +V L+ +L I+ D + F + + + V+ FQ + L Sbjct: 319 PGTPLRQGSRGTAVFTLQRQLNRIAKDYPFLGKLTVDGVFGSRMAATVRAFQKQFNLTAD 378 Query: 155 GMVDSSTLEAMN 166 G+V T ++ Sbjct: 379 GVVGRQTWYKIS 390 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 9/133 (6%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDILSRGGWPELPI 99 V+ +F A + + + +T +K Y DI +R L Sbjct: 536 SLESVTVDGKFGAGTAAAVRRFQRYFGLTADGVVGRTTWQKLYEVYNDIANRLLSSSLRP 595 Query: 100 R----PLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLD 152 L G++ V+ L+ L + + P + F A E AV+ +Q GL Sbjct: 596 GEYPGVLRSGSTGTPVRELQFYLYLMSAYESSIPPVSIDGKFGADTERAVRAYQQFAGLT 655 Query: 153 PSGMVDSSTLEAM 165 G+V +T ++ Sbjct: 656 VDGVVGRTTWNSL 668 Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 39/178 (21%) Query: 26 LVEKPIHASVLDEIINESYHSIV--NDRFDNFLARVDMGIDSDIPIISKETI--AQTEKA 81 L+ + ++ +F +L +S IP +S + A TE+A Sbjct: 588 LLSSSLRPGEYPGVLRSGSTGTPVRELQFYLYLMS---AYESSIPPVSIDGKFGADTERA 644 Query: 82 IAFYQD--------ILSRGGWPEL---------------------PIRPLHLGNSSVSVQ 112 + YQ ++ R W L P PL +G+S +V Sbjct: 645 VRAYQQFAGLTVDGVVGRTTWNSLYGRASQLRSSGPVVTLKRLPYPGTPLTVGSSGKAVL 704 Query: 113 ---RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L R+ + L+ + +A + Q GL+ +G+ D+ T A+ Sbjct: 705 YYNLLLLRIAYYFSSVEAPPLADRYTDETATATRSAQQLLGLEQTGIADADTWTAVEA 762 >gi|119510785|ref|ZP_01629911.1| hypothetical protein N9414_03905 [Nodularia spumigena CCY9414] gi|119464548|gb|EAW45459.1| hypothetical protein N9414_03905 [Nodularia spumigena CCY9414] Length = 84 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V+++++ L+ +G L + ++ +D ESAV+ FQ GL G+V T + Sbjct: 24 QGEDVRKVQQALVNAGFLSAN-QINGIYDNDTESAVEKFQEEKGLSQDGVVGPQTRRLLG 82 Query: 167 VP 168 + Sbjct: 83 IS 84 >gi|16760952|ref|NP_456569.1| hypothetical protein STY2218 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25323524|pir||AB0757 probable exported protein STY2218 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503250|emb|CAD02376.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 309 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 42/155 (27%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W +P + ++ Sbjct: 98 IVVNVAEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVW-VPTANTRR 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + E G N M I Sbjct: 157 E----------------------------------YAKEGKTLPAMVPAGPDNPMGLYAI 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 T H T F +R + GC+R+RN Sbjct: 183 YIGRLYAT--HGTNAN--FGIGLR-VSQGCIRLRN 212 >gi|304391839|ref|ZP_07373781.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] gi|303296068|gb|EFL90426.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] Length = 214 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 39/201 (19%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + S + + P R + + + +++ ++++ L V ++ Sbjct: 39 ISSMSWKEGRKPSKRRYMSDKSPIRKRMVRFDKQYSAGTIVIDTDERRLYFVTKRGRAMK 98 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 V VGR + +I R P W P ++M+A +++ + I + Sbjct: 99 YGVGVGRDGFE-WNGTHKITRKAKWPSWTPP-----QEMIARVKR------EQGIKLKSF 146 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNV 335 + R N M + Y + Y +H T +P Sbjct: 147 --------------YKGGPKNKRV-----NPMGAR--GLYIGSTIYRIHGTNQPWTIGKA 185 Query: 336 VRFETSGCVRVRN--IIDLDV 354 + +SGC+R+ N + DL Sbjct: 186 M---SSGCIRMANDDVSDLYE 203 >gi|59712850|ref|YP_205626.1| general secretion pathway protein A [Vibrio fischeri ES114] gi|59480951|gb|AAW86738.1| general secretion pathway protein A [Vibrio fischeri ES114] Length = 518 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 4/111 (3%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 ++ + + + + + + + W P + R + G+ ++ L L + L+ Sbjct: 407 LLPSKRVEVSHQWFSRHWNGAYVQLWQKPIITERAMRKGDEGEAIFALNHLLSTA--LEQ 464 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 S FD E VK FQ GL G+ SSTL ++ + LQ Sbjct: 465 PMIESDFFDEKTEQQVKQFQEIFGLKEDGIAGSSTLMWLDSVTNANAPLLQ 515 >gi|39936627|ref|NP_948903.1| ErfK/YbiS/YcfS/YnhG protein [Rhodopseudomonas palustris CGA009] gi|192292450|ref|YP_001993055.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] gi|39650483|emb|CAE29006.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] gi|192286199|gb|ACF02580.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 239 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 46/177 (25%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L L R + + ++V+ P L V G +R + VGR D T Sbjct: 74 VAELPARLKRQIVAYQTREAPGTIVVDTPNTYLYYVLGGGRAIRYGIGVGR-DGFTWSGV 132 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 + R P W P +I + YL + Sbjct: 133 KSVARKAEWPDWTPPPEMIARQP---------YLPRH----------------------- 160 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + Y +H T P +SGC+R+ N Sbjct: 161 -------MAGGPGNPLGARAMYL--GGTVYRIHGTNAPSTIGT---HVSSGCIRLTN 205 >gi|325921073|ref|ZP_08182950.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] gi|325548461|gb|EGD19438.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] Length = 1267 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 102 LHLGNSSVSVQRLRERLIIS---GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ V+ L+ RL G + + E AV+ FQ GL +G+ Sbjct: 948 LRLGDRGREVEFLQYRLQQLDARGPNGQAVPQDGHYGPETEHAVRQFQQDQGLPATGIAG 1007 Query: 159 SSTLEAMNVPVDLRIRQLQ 177 A++ R L+ Sbjct: 1008 QELDAALSQAQHARRVSLK 1026 >gi|153007497|ref|YP_001368712.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151559385|gb|ABS12883.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 206 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 8/165 (4%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V + A+ + K+ + + + ++ Y ++P + Sbjct: 33 YSSVTDAGYVVPAIPSEKIQAQYRRQIVKYPTDEAPGTIIVDTREKFLYLIMPEGKAMRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 93 GIGVGREGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 Y++ +H TPE + +SGC+R+ ++I+DL Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMNQDIMDLYD 194 >gi|118470609|ref|YP_889561.1| gp35 protein [Mycobacterium smegmatis str. MC2 155] gi|118171896|gb|ABK72792.1| gp35 protein [Mycobacterium smegmatis str. MC2 155] Length = 275 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 95 PELPIRPL------HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 P +P+ V L+ RL G + F E+AV+ FQ R Sbjct: 200 PRVPVGEYIDVLLYRP-MEGAEVAELQRRLNALG---ADLVVDGIFGPLTEAAVRDFQRR 255 Query: 149 H-GLDPSGMVDSSTLEAMN 166 GL G+V +T A+N Sbjct: 256 TPGLKVDGIVGPATAAALN 274 >gi|259508327|ref|ZP_05751227.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium efficiens YS-314] gi|259164084|gb|EEW48638.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium efficiens YS-314] Length = 406 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 23/162 (14%) Query: 27 VEKPIHASVLDEIINESYHSIVN----DRFDNFLARVDMGIDS-DIPIISKETIAQTEKA 81 V + + E +++ + +D +A + + +++ KA Sbjct: 12 VSDVLRVGDRSPRVAEVRNTLARLGVIEGYDRDMATRSESRKFREEDTYFDDGLSEHLKA 71 Query: 82 IAFYQDILSRGGWPELPIRPLH--------------LGNS--SVSVQRLRERLIISGDLD 125 + I+ G +L +R L GN+ V ++ L G Sbjct: 72 FQQARGIIPTGFIDDLTLRVLREASYTLGARVLSYQPGNNLVGDDVVEMQTHLQELGFY- 130 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + F Y SAV +Q+ +GL G+ T+ A++ Sbjct: 131 -RERIDGRFGEYTHSAVMDYQLNYGLQVDGICGPDTIRALSR 171 >gi|163759276|ref|ZP_02166362.1| hypothetical protein HPDFL43_05910 [Hoeflea phototrophica DFL-43] gi|162283680|gb|EDQ33965.1| hypothetical protein HPDFL43_05910 [Hoeflea phototrophica DFL-43] Length = 236 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 10/204 (4%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 ++ L+ERL G + A AV+ FQ HGL G+ T A++ Sbjct: 4 IRDLQERLKALGY--NPGIVDGAMGPNTRKAVREFQADHGLGIDGVAGPRTWSALDR-AL 60 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R +++ M + + ASL A LRS R Sbjct: 61 TRKGAPAGTARPTPPWVDEMMRRKGLHEGRDHASLSAW------LRSAGSAVDPARTPWC 114 Query: 231 LHSRINRIMFNPY-WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + I+ +P + + ++ + + + K + V + Sbjct: 115 GDAVETAILRALPDEPVPANPMASINWLKFGREMKTPAFGAVLVFWRGSKSGWQGHVGFY 174 Query: 290 SPEPPNFIFRQDPGKINAMASTKI 313 E + NA+ TKI Sbjct: 175 VGEDATHYHVLGGNQSNAITITKI 198 >gi|27379330|ref|NP_770859.1| hypothetical protein blr4219 [Bradyrhizobium japonicum USDA 110] gi|27352481|dbj|BAC49484.1| blr4219 [Bradyrhizobium japonicum USDA 110] Length = 217 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + R G N + + I +++ Y +H T +P +SGC+R+ Sbjct: 124 QARLGPYPARVAGGPANPLGARGIYLFVGNKDTLYRIHGTNQPEYIGQ---AISSGCIRM 180 Query: 347 RN 348 RN Sbjct: 181 RN 182 >gi|15964713|ref|NP_385066.1| hypothetical protein SMc00039 [Sinorhizobium meliloti 1021] gi|15073891|emb|CAC45532.1| Hypothetical protein SMc00039 [Sinorhizobium meliloti 1021] Length = 242 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ RQ+ R + ++V+ L V+ G +R V +GR Sbjct: 78 PEVPFRQIDPRFYRQEVGDPFGEAPGTIVVDTADRYLYLVQPGGRAMRYGVGLGREGFA- 136 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P +I + +L + Y DN Sbjct: 137 WSGRGLIQWKQKWPKWTPPNEMIARQ--PVLAK---YSADNGGM---------------- 175 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVR 345 PG N + S + F + + +H TPE +SGCVR Sbjct: 176 ------------PPGLDNPLGSRALYIFQNGQDTLYRVHGTPEWQSIGK---AVSSGCVR 220 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + P Sbjct: 221 MVNQDVIDLYDRVRNKAP 238 >gi|77463812|ref|YP_353316.1| putative lipoprotein [Rhodobacter sphaeroides 2.4.1] gi|77388230|gb|ABA79415.1| putative lipoprotein [Rhodobacter sphaeroides 2.4.1] Length = 342 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 53/202 (26%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ V R +++N L V +R + VG+ Sbjct: 57 PAIPTDRVPVQYQRQTVAYTSNEAPGTIVINPRERVLYFVTGKDTAIRYGIAVGKEG--- 113 Query: 229 PILHSRINRIMFN----PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 ++ N P W P +I D L++ Sbjct: 114 --FQWSGTAVVANRRHWPTWTPPPEMI--DRKPELKK----------------------- 146 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETS 341 W Q G N + + + +H TPE + +S Sbjct: 147 ---WEKG--------QPGGPTNPLGARALYLETNGRDYGYRIHGTPEWNSIGHN---ASS 192 Query: 342 GCVRV--RNIIDLDVWLLKDTP 361 GC+R+ ++++DL + Sbjct: 193 GCIRMINQDVVDLFERVPDGAK 214 >gi|319784591|ref|YP_004144067.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170479|gb|ADV14017.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 274 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 71/225 (31%), Gaps = 43/225 (19%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + ++ +R ++V+ L V G +R V +GR + Sbjct: 70 PAIPVDKIDPQFLRQIVPDPTGQKPGTIVVDTTGHFLYLVRPGGQAIRYGVGLGRAGFE- 128 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +I + L+ P + + Sbjct: 129 WSGDAVVQWKQKWPKWTPPDEMIARQ--PELK--PYSADNGGM----------------- 167 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + + + + Y +H +PE +SGCVR Sbjct: 168 ------------PGGLKNPLGARALYLFQGNVDTLYRLHGSPEWRSIGKS---VSSGCVR 212 Query: 346 V--RNIIDLDVWLLKDTP-TWSRYHIEEVVKTRKTTPVKLATEVP 387 + ++IIDL + TP + + +V T + + VP Sbjct: 213 LMNQDIIDLYDRVPSKTPVIVTSDASQPMVATANRQAIPIDAGVP 257 >gi|238025815|ref|YP_002910046.1| Gp43, bacteriophage-acquired protein [Burkholderia glumae BGR1] gi|237875009|gb|ACR27342.1| Gp43, bacteriophage-acquired protein [Burkholderia glumae BGR1] Length = 270 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LH + V L+ RL +G + + +D E AVK Q GL G+ Sbjct: 3 VLHFNDRGAEVGLLQSRLARAGY---TVPTTHIYDEATERAVKAVQAAAGLVVDGIAGPK 59 Query: 161 TLE 163 T Sbjct: 60 TYA 62 >gi|291441499|ref|ZP_06580889.1| Muramoyl-pentapeptide carboxypeptidase [Streptomyces ghanaensis ATCC 14672] gi|291344394|gb|EFE71350.1| Muramoyl-pentapeptide carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 245 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G S V +L+ RL G + +F +A+K FQ +GL G+ Sbjct: 39 TRTLSQGASGADVTQLQIRLG--GYPGYGSVLAVDGSFGPATAAALKRFQSAYGLTADGV 96 Query: 157 VDSSTLEAM 165 +T + Sbjct: 97 AGPNTYSKL 105 >gi|239933149|ref|ZP_04690102.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G S V +L+ RL G + +F +A+K FQ +GL G+ Sbjct: 19 TRTLSQGASGADVTQLQIRLG--GYPGYGSVLAVDGSFGPATAAALKRFQSAYGLTADGV 76 Query: 157 VDSSTLEAM 165 +T + Sbjct: 77 AGPNTYSKL 85 >gi|312200757|ref|YP_004020818.1| peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] gi|311232093|gb|ADP84948.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] Length = 1236 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 98 PIRPLHL--GNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R + L G V+ L++ L G L + SAV+ +Q G+ Sbjct: 12 PARSIRLLHGAVGGPDVELLQDALAAVGY--DPGRLDGIYGPLTASAVRRYQGVRGIAQD 69 Query: 155 GMVDSSTLEAMNVPVDLRIR 174 G+V +T EA+ + + Sbjct: 70 GIVGPATWEALAAEPNSPLA 89 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 22/106 (20%) Query: 81 AIAFY---QDILSRG-----GW--------PELPIRPLHL---GN-SSVSVQRLRERLII 120 A+ Y + I G W L RPL + G + V+R++E L Sbjct: 56 AVRRYQGVRGIAQDGIVGPATWEALAAEPNSPLAGRPLRVTIAGAVAGDDVRRVQEGLSS 115 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +G + + AV+ FQ+ HGL G+V TL A+ Sbjct: 116 AGF--DPGPIDAVYGPMTARAVRRFQLVHGLGADGIVGPRTLAALT 159 >gi|307322404|ref|ZP_07601761.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306891939|gb|EFN22768.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] Length = 231 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 42/172 (24%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R K ++V+ + L ++ R + VGR D ++ R Sbjct: 55 YWRTKVRFRTDEAPGTIIVDTNSKYLYYIDGPNRATRYGIGVGR-DGFGWSGVVKVGRKA 113 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P + ++ + Sbjct: 114 EWPSWTPPAEMRVRE-----------------------------------RAKGRILPIT 138 Query: 300 QDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 Q G N + + + R+ + +H T +P + +SGC+R+ N Sbjct: 139 QPGGIDNPLGARALYLYKGGRDTIFRIHGTNQPWTIGQNM---SSGCIRMMN 187 >gi|113953250|ref|YP_731240.1| ErfK/YbiS/YcfS/YnhG family protein [Synechococcus sp. CC9311] gi|113880601|gb|ABI45559.1| ErfK/YbiS/YcfS/YnhG family protein [Synechococcus sp. CC9311] Length = 195 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 49/156 (31%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V++++ + V G+ V +G TP ++ +M NP + Sbjct: 68 VVLDLGRRQISVVREGQTLGPWPVAIGDPRTPTPSGVFKVENMMMNPQYQ---------- 117 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 ++ R G + + I F Sbjct: 118 ---------------------------------STKSGKLHPKR---GPQSPLGHRWIGF 141 Query: 316 --YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 N +H TP P ++GCVR+ N Sbjct: 142 LRSGPNQFGIHGTPWPHWV-KTRAAVSNGCVRMLNA 176 >gi|25029491|ref|NP_739545.1| putative hydrolase [Corynebacterium efficiens YS-314] gi|23494780|dbj|BAC19745.1| putative hydrolase [Corynebacterium efficiens YS-314] Length = 406 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 23/162 (14%) Query: 27 VEKPIHASVLDEIINESYHSIVN----DRFDNFLARVDMGIDS-DIPIISKETIAQTEKA 81 V + + E +++ + +D +A + + +++ KA Sbjct: 12 VSDVLRVGDRSPRVAEVRNTLARLGVIEGYDRDMATRSESRKFREEDTYFDDGLSEHLKA 71 Query: 82 IAFYQDILSRGGWPELPIRPLH--------------LGNS--SVSVQRLRERLIISGDLD 125 + I+ G +L +R L GN+ V ++ L G Sbjct: 72 FQQARGIIPTGFIDDLTLRVLREASYTLGARVLSYQPGNNLVGDDVVEMQTHLQELGFY- 130 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + F Y SAV +Q+ +GL G+ T+ A++ Sbjct: 131 -RERIDGRFGEYTHSAVMDYQLNYGLQVDGICGPDTIRALSR 171 >gi|294498085|ref|YP_003561785.1| hypothetical protein BMQ_1318 [Bacillus megaterium QM B1551] gi|294348022|gb|ADE68351.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 170 Score = 60.4 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 6/73 (8%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 +P I ++P + + + + +H T +P + GC+R+ N Sbjct: 90 TPTGDFIIVNREPNPGGPFGTMWLSLS-KKSYGIHGTNDPSSIGK---AVSKGCIRMYNA 145 Query: 350 I--DLDVWLLKDT 360 +L + T Sbjct: 146 QVNELAKIVPNGT 158 >gi|313113432|ref|ZP_07799021.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624159|gb|EFQ07525.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 867 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 84 FYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLR--ERLIISGDLDPSK-GLSVAFDAYVE 139 ++ I S G P P L G S +V+ ++ ++ + + + + F + Sbjct: 492 QFRSIQSDNGTPNAYPGTALREGASGQNVRLVQFWLKIARTVYSNLNNITVDGKFGSATT 551 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL-EQKMGLRYVLV 198 +AVK FQ GL G+V +T + + +L + +R + + G V Sbjct: 552 AAVKRFQTYFGLTSDGVVGRTTWNKLYEVYNDIANKLLSSSLRPGEYPGVLRKGSSGTAV 611 Query: 199 NIPAASLEAV 208 L + Sbjct: 612 RELQFYLYLM 621 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 L G+S +V+ L+ L + + S + F A E+AV+ +Q GL G Sbjct: 599 PGVLRKGSSGTAVRELQFYLYLMSAYESSIPAIGIDGQFGASTEAAVRAYQRFAGLTVDG 658 Query: 156 MVDSSTLEAM 165 +V +T ++ Sbjct: 659 IVGRTTWNSL 668 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W L G++ +V++L+ L PS + + + V+ FQ Sbjct: 415 DGTWG---GTVLRTGSTGSAVEQLQFWLNTLAQYESSIPSLTVDGVYGTGTANTVRAFQR 471 Query: 148 RHGLDPSGMVDSSTLEAM 165 ++GL G+V T + Sbjct: 472 KYGLTVDGVVGRDTWTEL 489 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P P+ G+S +V L+ +L I+ D + F A + + V+ FQ + L Sbjct: 319 PGSPIRQGDSGTAVFTLQRQLNRITKDYPFLGLLTVDGVFGAKMAATVRAFQKQFNLTAD 378 Query: 155 GMVDSSTLEAMN 166 G+V ++ Sbjct: 379 GVVGRQAWYKIS 390 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 50/264 (18%), Positives = 81/264 (30%), Gaps = 47/264 (17%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIV--NDRFDNFLAR 58 +VG NK+ + + L+ + ++ + +F +L Sbjct: 568 VVGRTTWNKLYEVYN-----DIANKLLSSSLRPGEYPGVLRKGSSGTAVRELQFYLYLMS 622 Query: 59 VDMGIDSDIPIISKETI--AQTEKAIAFYQD--------ILSRGGWPEL----------- 97 +S IP I + A TE A+ YQ I+ R W L Sbjct: 623 ---AYESSIPAIGIDGQFGASTEAAVRAYQRFAGLTVDGIVGRTTWNSLYDKASTLRTSG 679 Query: 98 ----------PIRPLHLGNSSVSV---QRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 P PL +G+S +V L +R+ LS + A + Sbjct: 680 PVVTLKRLPYPGAPLTVGSSGSAVLYYSLLLQRIAYYFTSVEKPPLSDQYTDETAVATRS 739 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR--YVLVNIPA 202 Q GL +G+ D+ T A+ ++ N R G V Sbjct: 740 AQELLGLPETGIADADTWTAVEALSLQLAAEMP-NPDRSIGHGPVYPGRAIGAGSVGPDV 798 Query: 203 ASLEAVENGKVGLRSTVIVGRVDR 226 A +E NG+ L T +R Sbjct: 799 AQVETWLNGRSCLYCTEGYVTENR 822 Score = 44.3 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 92 GGWPELPIRPLHLGNSSVSVQRL------RERLI-ISGDLDPSKGLSVAFDAYVESAVKL 144 G P P R + G+ V ++ R L G + F +AV+L Sbjct: 779 GHGPVYPGRAIGAGSVGPDVAQVETWLNGRSCLYCTEGY----VTENRCFGPEETAAVRL 834 Query: 145 FQMRHGLDPSGMVDSSTLEAMNV 167 Q R GL +G VD T A+ Sbjct: 835 AQQRAGLLVTGTVDRGTWAALQA 857 >gi|150396491|ref|YP_001326958.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150028006|gb|ABR60123.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 193 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 44/190 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ R + ++VN L V+ G +R + VG R T Sbjct: 32 PQTARTRIDPRFRRQQVAYPGGEAPGTIVVNTAERYLYYVQGGGSAIRYGIGVGEEGR-T 90 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 ++I R P W ++I+ + L Q Sbjct: 91 LKGRAKIGRKAEWPSWTPTANMIR--LKPHLAQ--------------------------- 121 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 + G N + + + + +H T EP +SGC+R Sbjct: 122 -------YAGGVSGGLHNPLGAAALYLYRGGNDTMFRLHGTNEPWSIGQ---AVSSGCIR 171 Query: 346 VRNIIDLDVW 355 + N D+ Sbjct: 172 LTN-EDIVDL 180 >gi|170750298|ref|YP_001756558.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170656820|gb|ACB25875.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 221 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 47/168 (27%), Gaps = 46/168 (27%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R G ++V+ L V G LR V VGR T I Sbjct: 79 RETVAYNGPYGAGTIVVSTAERRLYYVLGGGQALRYGVGVGRPG-FTWGGVQTITMKREW 137 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P +++++ P+ Sbjct: 138 PDWRPPATMLKRR---------------------------------------PDLPRYMK 158 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + + Y +H + EP +SGC+R+ N Sbjct: 159 GGLENPLGARAMYL--GGSIYRIHGSNEPETIGT---AVSSGCIRMTN 201 >gi|113478151|ref|YP_724212.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110169199|gb|ABG53739.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 163 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G+ V +L+ +L + G + F + AVK FQ GL G+V T Sbjct: 99 LHHGSRGHRVAKLQHQLGLMGYFHHP-RATGYFGHKTKYAVKAFQRDVGLRADGIVGPRT 157 Query: 162 LEAMN 166 A+ Sbjct: 158 RAALG 162 >gi|313893325|ref|ZP_07826899.1| 3D domain protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442094|gb|EFR60512.1| 3D domain protein [Veillonella sp. oral taxon 158 str. F0412] Length = 202 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 32/189 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L S + + E AV+ FQ GL G V Sbjct: 24 AKTIDKGQRGHHVSKVQTMLKHQGFLHDS--VDGIYGHNTEQAVRKFQKSKGLAVDGRVG 81 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 ST+ A+ + + + L + +Y V AS + Sbjct: 82 PSTMNAL----EKMETRYGGH---GTALSHDGVPNKYSRVLTMEASA-----------YS 123 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 T I+ +IP Y++ + D+ G Sbjct: 124 SQDPGNGNYTATGSRLKKGIVSVDPRLIPL------------GTRLYVEGYGYAVADDVG 171 Query: 279 KEVFVEEVD 287 + +D Sbjct: 172 GAIKGHRID 180 >gi|303246394|ref|ZP_07332673.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfovibrio fructosovorans JJ] gi|302492104|gb|EFL51979.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfovibrio fructosovorans JJ] Length = 246 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 55/203 (27%), Gaps = 47/203 (23%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + + D RI + R + Y+ N+P + Sbjct: 78 LGKTARSPAGTAFDARIADFAASSNRYSIEVRLSRRRLYLYENLPDGTRRL------DRV 131 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 TV V D + P + I F P+W ++ K+ Sbjct: 132 YTVAVPSRDMEAPQGWGVVTGISFEPWWH--PTLAMKERARK------------------ 171 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 + PG + N M + KI +H P Sbjct: 172 ---------------KGKTLPTAVPPGVRENPMGTFKIFLSHGMGFRIHGNNNPRSIG-- 214 Query: 336 VRFETSGCVRVRNII--DLDVWL 356 R TSGC+R+RN ++ L Sbjct: 215 -RPVTSGCIRMRNDEGKEMAKLL 236 >gi|300855725|ref|YP_003780709.1| SpoIID-like domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300435840|gb|ADK15607.1| SpoIID-like domain containing protein [Clostridium ljungdahlii DSM 13528] Length = 852 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 +S ++ ++ +I + PL LG +S V L+ LI G G Sbjct: 749 LSTKSYDSIKQF-----NITVNSKPLYISTLPLSLGMTSSDVAALQNALIKLGY--NVSG 801 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + F +SAV FQ G+ SG V + T A+N Sbjct: 802 ATGYFGTQTKSAVIAFQTDAGIPASGTVGTWTYSALN 838 >gi|320007688|gb|ADW02538.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces flavogriseus ATCC 33331] Length = 513 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ ++ L G + F +AV+ FQ GLD G V T Sbjct: 379 KSGSTGSQVKAVQTLLNQQGY--RAGTEDGVFGTATGNAVRAFQTERGLDADGTVGPKTW 436 Query: 163 EAM 165 A+ Sbjct: 437 TAL 439 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 11/96 (11%) Query: 80 KAIAFYQDILSRGG-----WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +A + + + G W L L G S +V+RL+ L + L + Sbjct: 417 RAFQTERGLDADGTVGPKTWTALLSAGTTPALDTGASGDAVKRLQRALTAA--LGRTVAA 474 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 AF + AV+ +Q L G V + T A+ Sbjct: 475 DGAFGTNTDKAVRDYQSSRNLAVDGSVGTGTWAALQ 510 >gi|188993381|ref|YP_001905391.1| putative peptidoglycan binding protein [Xanthomonas campestris pv. campestris str. B100] gi|167735141|emb|CAP53353.1| putative peptidoglycan binding protein [Xanthomonas campestris pv. campestris] Length = 453 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMV 157 L V+ L+E+L G LD + + E+AV+ FQ + L G Sbjct: 253 DGVLKRNEQGAPVKELQEKLSKLGYLDAKDAI-GTYGPKTEAAVEKFQQENRLKGVDGKA 311 Query: 158 DSSTLEAMNVPVD 170 TL +++ V Sbjct: 312 GPETLASIDKNVQ 324 >gi|221639666|ref|YP_002525928.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides KD131] gi|221160447|gb|ACM01427.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides KD131] Length = 342 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 53/202 (26%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ V R +++N L V +R + VG+ Sbjct: 57 PAIPTDRVPVQYQRQTVAYTSNEAPGTIVINPRERVLYFVTGKDTAIRYGIAVGKEG--- 113 Query: 229 PILHSRINRIMFN----PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 ++ N P W P +I D L++ Sbjct: 114 --FQWSGTAVVANRRHWPTWTPPPEMI--DRKPELKK----------------------- 146 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETS 341 W Q G N + + + +H TPE + +S Sbjct: 147 ---WEKG--------QPGGPTNPLGARALYLETNGRDYGYRIHGTPEWNSIGHN---ASS 192 Query: 342 GCVRV--RNIIDLDVWLLKDTP 361 GC+R+ ++++DL + Sbjct: 193 GCIRMINQDVVDLFERVPDGAK 214 >gi|146277624|ref|YP_001167783.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555865|gb|ABP70478.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] Length = 344 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 55/202 (27%), Gaps = 53/202 (26%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ V R +++N L + +R + VG+ Sbjct: 57 PAIPTERVPVQYQRQSVAYTSNEPPGTIVINPRERVLYFITGEDTAIRYGIAVGKEG--- 113 Query: 229 PILHSRINRIMFN----PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 ++ N P W P +I++ E Sbjct: 114 --FQWSGTAVVANRRHWPTWTPPPEMIERK----------------------------PE 143 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETS 341 W Q G N + + + +H TPE + +S Sbjct: 144 LARWEKG--------QPGGPTNPLGARALYLETNGRDYGYRIHGTPEWNSIGHN---ASS 192 Query: 342 GCVRV--RNIIDLDVWLLKDTP 361 GC+R+ +++IDL + Sbjct: 193 GCIRMINQDVIDLFERVPDGAK 214 >gi|118588576|ref|ZP_01545984.1| hypothetical protein SIAM614_17759 [Stappia aggregata IAM 12614] gi|118438562|gb|EAV45195.1| hypothetical protein SIAM614_17759 [Stappia aggregata IAM 12614] Length = 196 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 42/189 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++++ R + + ++V+ L V+ +R V +GR + Sbjct: 32 PAPDLKKVPERYYRKQVDYPTSEKVGTLVVDTSNYYLYLVQENGKAMRYGVGLGRAGFE- 90 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +RI R P W P +IQ+ E W Sbjct: 91 WSGRARIARKAAWPKWTPPEEMIQRQ----------------------------PELEKW 122 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + PG N + + + +++ Y +H T E + +SGCVR Sbjct: 123 SWRNGGM-----PPGIENPLGARALYIFQGNKDTLYRIHGTAEYWTIGS---AVSSGCVR 174 Query: 346 V--RNIIDL 352 + +++IDL Sbjct: 175 LINQDVIDL 183 >gi|21233230|ref|NP_639147.1| hypothetical protein XCC3802 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770172|ref|YP_244934.1| hypothetical protein XC_3874 [Xanthomonas campestris pv. campestris str. 8004] gi|21115073|gb|AAM43048.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575504|gb|AAY50914.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 453 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMV 157 L V+ L+E+L G LD + + E+AV+ FQ + L G Sbjct: 253 DGVLKRNEQGAPVKELQEKLSKLGYLDAKDAI-GTYGPKTEAAVEKFQQENRLKGVDGKA 311 Query: 158 DSSTLEAMNVPVD 170 TL +++ V Sbjct: 312 GPETLASIDKNVQ 324 >gi|298250948|ref|ZP_06974752.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297548952|gb|EFH82819.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 317 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 8/81 (9%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + WP G+S +V+ ++ L+ G S + F + S VK FQ + Sbjct: 45 AARTWPT-----YQSGSSGENVRSIQYMLVQRGY---SLTVDGQFGSGTASVVKSFQSTN 96 Query: 150 GLDPSGMVDSSTLEAMNVPVD 170 GL G+V T E + V Sbjct: 97 GLSVDGIVGPQTWEKLIVTTQ 117 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 18/127 (14%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP 98 ++ Y V+ +F + A V S ++ I+ W +L Sbjct: 68 LVQRGYSLTVDGQFGSGTASVVKSFQST-------------NGLS-VDGIVGPQTWEKLI 113 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G++ +V L+ +L G S AF ESAVK FQ GL G+ Sbjct: 114 VTT-QNGSNGSAVTTLQRQLNAHG---ASLTTDGAFAPATESAVKSFQSSKGLSADGIAG 169 Query: 159 SSTLEAM 165 T + Sbjct: 170 LDTWSQL 176 >gi|241203248|ref|YP_002974344.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857138|gb|ACS54805.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 230 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 46/208 (22%) Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 F G P + + + Q R K L V+++ Sbjct: 22 AFAAPAGSAPDNARAPAQIVRVAQMPKYVKPQ----FKRKKVRLATTEAAGTVIIDTNNK 77 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L VE R + VGR D +I R P W P + +++ Sbjct: 78 YLYLVEGNNRATRYGIGVGR-DGFGWSGVVKIGRKAEWPGWTPPAEMRRRE--------- 127 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNT 321 + + Q+ G+ N + + + R+ Sbjct: 128 --------------------------AAKGHMIPAFQEGGEDNPLGARAMYLYQGGRDTI 161 Query: 322 Y-MHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T +P + +SGC+R+ N Sbjct: 162 FRIHGTNQPWTIGLNM---SSGCIRMMN 186 >gi|27381799|ref|NP_773328.1| hypothetical protein bll6688 [Bradyrhizobium japonicum USDA 110] gi|27354968|dbj|BAC51953.1| bll6688 [Bradyrhizobium japonicum USDA 110] Length = 401 Score = 60.4 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 60/195 (30%), Gaps = 48/195 (24%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 D QL NL R + L K ++V+ P L V +R V VGR D T Sbjct: 199 PDAAPAQLPPNLRRQEVSLATKEPAGTIIVDTPNTYLYYVLGNGRAVRYGVRVGR-DGFT 257 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +I R P W P +I++ Sbjct: 258 WTGVQKITRKAEWPDWHPPTEMIERQ---------------------------------- 283 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV- 346 P G N + + + S Y +H T +P F +SGC+ + Sbjct: 284 -----PYLPRFMAGGPGNPLGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCIGML 333 Query: 347 -RNIIDLDVWLLKDT 360 ++ DL + T Sbjct: 334 NEDVSDLFDRVKVGT 348 >gi|227824953|ref|ZP_03989785.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905452|gb|EEH91370.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 242 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 H G S V ++E+L++ G + A+K +Q GL+ G++ Sbjct: 35 AAAFHQGESGPEVAAIQEKLLMEGY--DIGIPDGVYGERTVDAIKKYQASMGLEVDGIIG 92 Query: 159 SSTL 162 ST Sbjct: 93 DSTY 96 >gi|126462648|ref|YP_001043762.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] gi|126104312|gb|ABN76990.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] Length = 342 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 53/202 (26%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ V R +++N L V +R + VG+ Sbjct: 57 PAIPTDRVPVQYQRQTVAYTSNEAPGTIVINPRERVLYFVTGKDTAIRYGIAVGKEG--- 113 Query: 229 PILHSRINRIMFN----PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 ++ N P W P +I D L++ Sbjct: 114 --FQWSGTAVVANRRHWPTWTPPPEMI--DRKPELKK----------------------- 146 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETS 341 W Q G N + + + +H TPE + +S Sbjct: 147 ---WEKG--------QPGGPTNPLGARALYLETNGRDYGYRIHGTPEWNSIGHN---ASS 192 Query: 342 GCVRV--RNIIDLDVWLLKDTP 361 GC+R+ ++++DL + Sbjct: 193 GCIRMINQDVVDLFERVPDGAK 214 >gi|282555166|gb|ADA82682.1| L,D-transpeptidase [Candidatus Blochmannia sayi] Length = 310 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 55/196 (28%), Gaps = 45/196 (22%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L +N + + +G ++ TP + I NP W IP ++ Sbjct: 100 IVINNAEMRLYYYPKNNNTVIVLPIAIGTIENATPSPWRTSIKHKKKNPIW-IPTKNMRD 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M S + Sbjct: 159 EYIKH----------------------------------GKTLPAIFPAGPNNPMGSYAL 184 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCV--RVRNIIDLDVWLLKDT-PTWSRYHIEE 370 H T F T GC+ R ++I L + T + I+ Sbjct: 185 YLGXNYAI--HGTNS--NFGIG-LKVTRGCIKLRPQDIKYLFNIVPVGTIVQFINEPIKS 239 Query: 371 VVKTRKTTPVKLATEV 386 ++T +++ + Sbjct: 240 TIETDGMQYLEIHNPL 255 >gi|92115831|ref|YP_575560.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gi|91798725|gb|ABE61100.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 172 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 54/207 (26%), Gaps = 49/207 (23%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIK---KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T A+ + + L + +LV L + + +R Sbjct: 3 TRAAVALAATIGASLLGTASAEARPDEVSYRSDYAPGTILVKTKERRLYLIVDSDRAIRY 62 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V VG+ +Q + I +P W P + + Sbjct: 63 PVGVGKAGKQ-WAGTAHIEGKYRDPAWAPPAEVKR------------------------- 96 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + P G N M + +H T P + Sbjct: 97 --------------DNPRIPDVIAGGSPSNPMGVAAMTLSGGGQYAIHGTNRPQTVGH-- 140 Query: 337 RFETSGCVRVRN--IIDLDVWLLKDTP 361 F + GC+R+ N I DL + TP Sbjct: 141 -FVSYGCIRMYNNDIDDLYRRVSIGTP 166 >gi|254183943|ref|ZP_04890534.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei 1655] gi|184214475|gb|EDU11518.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei 1655] Length = 270 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +L R Sbjct: 61 YRVLASGQRAPKHLTDADLAR 81 >gi|332558687|ref|ZP_08413009.1| putative lipoprotein [Rhodobacter sphaeroides WS8N] gi|332276399|gb|EGJ21714.1| putative lipoprotein [Rhodobacter sphaeroides WS8N] Length = 342 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 53/202 (26%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ V R +++N L V +R + VG+ Sbjct: 57 PAIPTDRVPVQYQRQTVAYTSNEAPGTIVINPRERVLYFVTGKDTAIRYGIAVGKEG--- 113 Query: 229 PILHSRINRIMFN----PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 ++ N P W P +I D L++ Sbjct: 114 --FQWSGTAVVANRRHWPTWTPPPEMI--DRKPELKK----------------------- 146 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETS 341 W Q G N + + + +H TPE + +S Sbjct: 147 ---WEKG--------QPGGPTNPLGARALYLETNGRDYGYRIHGTPEWNSIGHN---ASS 192 Query: 342 GCVRV--RNIIDLDVWLLKDTP 361 GC+R+ ++++DL + Sbjct: 193 GCIRMINQDVVDLFERVPDGAK 214 >gi|315646099|ref|ZP_07899219.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus vortex V453] gi|315278298|gb|EFU41614.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus vortex V453] Length = 146 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 45/183 (24%), Gaps = 61/183 (33%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++++++ L E GKV V G+ TP +I+ + N + Sbjct: 19 QFIVIDKSTNKLTYYEKGKVIKTFPVATGKKPSYTPEGLFKIHEKVKNRPYYK------- 71 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + N + + Sbjct: 72 -----------------------------------EGIKGGD--------PRNPLGDRWL 88 Query: 314 EFYSR------NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + +H + ++GC+R+ N WL + Sbjct: 89 GINVKVNGRISYAYAIHGNNNSNSIGK---YVSAGCIRMHNKD--VRWLYDKVKMNTPVL 143 Query: 368 IEE 370 I++ Sbjct: 144 IQK 146 >gi|326775778|ref|ZP_08235043.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces cf. griseus XylebKG-1] gi|326656111|gb|EGE40957.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces cf. griseus XylebKG-1] Length = 519 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 16/129 (12%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG-----WPEL 97 V + + S P +A + + + G W L Sbjct: 391 PQVKAVQTLLNAQGYQAGAADGSFGPTTKGAV-----QAFQRARALEADGTVGPKTWTAL 445 Query: 98 ----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 L G S +V+RL+ L + L + G +F E+AV+ +Q L Sbjct: 446 LSAGTTPALAKGASGDAVKRLQRALTAA--LGTTVGADGSFGPATETAVRTYQTGRKLSV 503 Query: 154 SGMVDSSTL 162 G V +T Sbjct: 504 DGKVGPATW 512 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ L G + +F + AV+ FQ L+ G V T A Sbjct: 387 GSTGPQVKAVQTLLNAQGY--QAGAADGSFGPTTKGAVQAFQRARALEADGTVGPKTWTA 444 Query: 165 M 165 + Sbjct: 445 L 445 >gi|255637048|gb|ACU18856.1| unknown [Glycine max] Length = 232 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G ++ V LR L G L + FD VESA+K +Q H L +G+VD T++ Sbjct: 49 GQNAKGVGELRGYLQKYGYLTKGSSSNDNFDENVESALKHYQAFHHLRDTGVVDDDTIKK 108 Query: 165 MNVP 168 M++P Sbjct: 109 MSLP 112 >gi|218288187|ref|ZP_03492486.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Alicyclobacillus acidocaldarius LAA1] gi|218241546|gb|EED08719.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Alicyclobacillus acidocaldarius LAA1] Length = 773 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 2/77 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ L+ L G S FD + VK FQ GL G+V T Sbjct: 57 LSYGSTGFYVEVLQNALNALGY--DVGQASGVFDGVTQKEVKAFQQAEGLQTDGIVGPMT 114 Query: 162 LEAMNVPVDLRIRQLQV 178 A+ V + + V Sbjct: 115 WGALAKAVADYRQVMTV 131 >gi|284042364|ref|YP_003392704.1| peptidase M23 [Conexibacter woesei DSM 14684] gi|283946585|gb|ADB49329.1| Peptidase M23 [Conexibacter woesei DSM 14684] Length = 352 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 2/82 (2%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + L R G P L RPL G + V L+ L G G +F + AV+ F Sbjct: 90 RRALGRRGRPSLGSRPLRTGLTGWDVAALQFLLHGRGF--GPGGFDGSFGPNTDDAVRRF 147 Query: 146 QMRHGLDPSGMVDSSTLEAMNV 167 Q L G+ +TL A+ Sbjct: 148 QSAASLGVDGVAGPATLAALRT 169 Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L +G + +AV+ Q R L G+ +T A+ Sbjct: 44 LQVGLRAAG--TSPGPIDGISGPRTLAAVRRIQARRNLAVDGIAGPATRRALGR 95 >gi|52079751|ref|YP_078542.1| N-acetylmuramoyl-L-alanine amidase [Bacillus licheniformis ATCC 14580] gi|52785121|ref|YP_090950.1| hypothetical protein BLi01353 [Bacillus licheniformis ATCC 14580] gi|319646441|ref|ZP_08000671.1| N-acetylmuramoyl-L-alanine amidase [Bacillus sp. BT1B_CT2] gi|52002962|gb|AAU22904.1| N-acetylmuramoyl-L-alanine amidase [Bacillus licheniformis ATCC 14580] gi|52347623|gb|AAU40257.1| hypothetical protein BLi01353 [Bacillus licheniformis ATCC 14580] gi|317392191|gb|EFV72988.1| N-acetylmuramoyl-L-alanine amidase [Bacillus sp. BT1B_CT2] Length = 354 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V++L+ RL+ +G P G ++ AV Q + G+ G+ ST Sbjct: 195 LKKGMSGSHVKKLQTRLVAAGFSLPKYGADGSYGDETVHAVVSLQKKAGIKADGIYGPST 254 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%) Query: 93 GWPELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLF 145 W LP +V +++ L + G+ + +AVK F Sbjct: 271 TW-TLPDGIYKVKNPLMKGTAVTQIQTALAALYYYPDKGAKNNGIDGYYGMKTANAVKRF 329 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q+ +GL G+ T M Sbjct: 330 QLMYGLGADGIYGPKTKAKM 349 >gi|544114|sp|Q99125|CWLX_BACLI RecName: Full=Probable N-acetylmuramoyl-L-alanine amidase; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; AltName: Full=ORFL3; Flags: Precursor gi|551735|gb|AAA22888.1| ORFL3 [Bacillus licheniformis] Length = 354 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V++L+ RL+ +G P G ++ AV Q + G+ G+ ST Sbjct: 195 LKKGMSGSHVKKLQTRLVAAGFSLPKYGADGSYGDETVHAVVSLQKKAGIKADGIYGPST 254 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%) Query: 93 GWPELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLF 145 W LP +V +++ L + G+ + +AVK F Sbjct: 271 TW-TLPDGIYKVKNPLMKGTAVTQIQTALAALYYYPDKGAKNNGIDGYYGMKTANAVKRF 329 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q+ +GL G+ T M Sbjct: 330 QLMYGLGADGIYGPKTKAKM 349 >gi|328887419|emb|CCA60658.1| putative peptidoglycan binding domain 1 [Streptomyces venezuelae ATCC 10712] Length = 415 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++L E L G + + + A +AVK +Q H L +G V Sbjct: 176 RTLKTGDKGKDVRQLEENLAALGYVGFD--VDEEYTAKTAAAVKRWQKSHDLKQTGTVGP 233 Query: 160 STLE 163 + Sbjct: 234 DQIA 237 >gi|147677766|ref|YP_001211981.1| hypothetical protein PTH_1431 [Pelotomaculum thermopropionicum SI] gi|146273863|dbj|BAF59612.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 218 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 14/88 (15%) Query: 278 GKEVFVEEV-DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNV 335 G+ V +W M + + +H T P + Sbjct: 60 GRYESPTPVGNWEVISMET-------NPPAVMGTRWLGLNIPYGNYGIHGTNAPHSIGS- 111 Query: 336 VRFETSGCVRVRN--IIDLDVWLLKDTP 361 F + GC+R+ N + +L + TP Sbjct: 112 --FASHGCIRMFNSDVEELFTLVTVGTP 137 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P P L G+ V ++ L G L + E AVK F+ +GL Sbjct: 146 GAPGTPPSVLKYGDKGPDVLEVQRSLKRLGYL--QWTPDGFWGNGTERAVKKFREDNGLK 203 Query: 153 PSGMVDSSTLE 163 S +VD + Sbjct: 204 GSVIVDEQVYK 214 >gi|134299797|ref|YP_001113293.1| cell wall hydrolase SleB [Desulfotomaculum reducens MI-1] gi|134052497|gb|ABO50468.1| cell wall hydrolase, SleB [Desulfotomaculum reducens MI-1] Length = 224 Score = 60.0 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 7/109 (6%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L R L LG VQ+L+ L G + F ++VK FQ R+GL G+ Sbjct: 12 LGDRTLKLGIQGYDVQQLQNNLNYLGY--KAGKSDGIFGWQTYNSVKQFQARNGLKVDGV 69 Query: 157 VDSST----LEAMNVPVDLRIRQLQV-NLMRIKKLLEQKMGLRYVLVNI 200 V +T + ++ R R V + L Y L + Sbjct: 70 VGRATARTMIAQVSGNSGQRPRTASVATATTSRGSLPLSRQDIYDLARV 118 >gi|254421544|ref|ZP_05035262.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196189033|gb|EDX83997.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 146 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-GMVD 158 PLH G+ +V +L+ RL ++ FD + A+ FQ +G+ G Sbjct: 13 EPLHEGDRGPAVAQLQARLAELNAYSSQ--ITGLFDVTTKRALTDFQADYGITEEAGFFG 70 Query: 159 SSTLEAMN 166 T A+ Sbjct: 71 PQTWYALT 78 >gi|53717805|ref|YP_106791.1| putative phage-encoded peptidoglycan binding protein [Burkholderia pseudomallei K96243] gi|52208219|emb|CAH34150.1| putative phage-encoded peptidoglycan binding protein [Burkholderia pseudomallei K96243] Length = 270 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G S +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---SLDVSHLYDEQTERAVQTLQATAGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +L R Sbjct: 61 YRVLASGQRDPKHLTDADLAR 81 >gi|115523771|ref|YP_780682.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisA53] gi|115517718|gb|ABJ05702.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 259 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 61/228 (26%), Gaps = 46/228 (20%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 TL A D + R + V+V+ L V +R V Sbjct: 56 TLSAPGAFEDGLAPAVADRFKRSVVSYPTREAPGTVIVDTSNTYLYYVLGQNRAIRYGVG 115 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VGR T ++R P W P +I + Sbjct: 116 VGREG-FTWSGVQTVSRKAEWPDWHPPAEMIARQ-------------------------- 148 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P G N + + + S +H T +P F + Sbjct: 149 -------------PYLPRFVAGGPGNPLGARAMYLGSSM-YRIHGTNDPSTIGQ---FVS 191 Query: 341 SGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 SGC+R+ N + DL + T ++ R A+ + Sbjct: 192 SGCIRLTNEDVEDLFSRVNIGTRVVVLPKTAPRLEARTPERAPAASRL 239 >gi|169634237|ref|YP_001707973.1| putative phage-related cell wall hydrolase [Acinetobacter baumannii SDF] gi|169153029|emb|CAP02090.1| putative phage-related cell wall hydrolase [Acinetobacter baumannii] Length = 276 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ +V L+ +L G + + F E AV FQ + GL G V Sbjct: 3 LKFGSKGTAVVTLQRQLAGMGYKGKTGKVLSIDGIFGESTEYAVIQFQKKVGLVADGKVG 62 Query: 159 SSTLEAMNVPVDLRI 173 T EA+ ++ Sbjct: 63 DKTREALAGNGLDKL 77 >gi|87302385|ref|ZP_01085210.1| Putative peptidoglycan binding domain 1 [Synechococcus sp. WH 5701] gi|87283310|gb|EAQ75266.1| Putative peptidoglycan binding domain 1 [Synechococcus sp. WH 5701] Length = 586 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 11/188 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+S V L+ L +G + +F E+AV FQ GL G+ Sbjct: 2 ALRRGDSGDRVSSLQTSLKKAGF--DPGAIDGSFGPGTEAAVIAFQKSEGLFADGIAGVE 59 Query: 161 TLEAMNV---PVDLRIRQLQV-NLMRIKKLLEQKMGLRYVLVNIP---AASLEAVENGKV 213 TL A+ P D R + ++ + ++ R + ++P A + Sbjct: 60 TLGALEEEILPDDARPDATALFSVELVAQMFSSATPRRNISTHLPHVLEAMRRVSLADRD 119 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII--QKDMMALLRQDPQYLKDNNI 271 L + R + + P + + D+ D K Sbjct: 120 MLLMALSTIRAETEGFEPIDEFRSRFNTAPGGPPFGLYDNRSDLGNQGPTDGADFKGRGF 179 Query: 272 HMIDEKGK 279 + + Sbjct: 180 VQLTGRNN 187 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 1/74 (1%) Query: 101 PLHLGNSSVSVQRLRERLI-ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G S V RL+ L F E V FQ G+ G+ Sbjct: 510 ALTRGMMSTEVGRLQLMLRKALSLTPADLPADSQFGPNTERRVSEFQKAKGIPADGIAGP 569 Query: 160 STLEAMNVPVDLRI 173 +T++A+ ++ Sbjct: 570 ATIKALEEVTGEKL 583 >gi|262170608|ref|ZP_06038286.1| general secretion pathway protein A [Vibrio mimicus MB-451] gi|261891684|gb|EEY37670.1| general secretion pathway protein A [Vibrio mimicus MB-451] Length = 529 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ + + + W R L G V L +L L + Sbjct: 420 LVGDQRYRIARQWLEPLWRGQYSLLWQGGFSRTLKQGMQGDDVALLESKLSQV--LGEPE 477 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 478 RPRDQFDKDLSRKVELFQRWQNMQVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|110636362|ref|YP_676570.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110287346|gb|ABG65405.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 206 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 45/195 (23%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +A + + ++ R + V+V+ L V G +R + VG Sbjct: 39 DAGYQLPKIPVSRVPRQYHRQIISYQTDEKPGTVVVDTKDKFLYLVMEGGKAMRYGIGVG 98 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R + +R+ P W P ++I++ Sbjct: 99 REG-FSWSGTARVALKREWPTWTPPAAMIKRQ---------------------------- 129 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFE 339 E W PG N + + + +++N +H TPE + Sbjct: 130 PELAKWAGG--------MPPGLSNPLGARALYLFNKNGDTGYRLHGTPEWWSIGQAM--- 178 Query: 340 TSGCVRV--RNIIDL 352 +SGC+R+ ++IIDL Sbjct: 179 SSGCIRLLNQDIIDL 193 >gi|258626901|ref|ZP_05721705.1| General secretion pathway protein A [Vibrio mimicus VM603] gi|258580824|gb|EEW05769.1| General secretion pathway protein A [Vibrio mimicus VM603] Length = 529 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ + + + W R L G V L +L L + Sbjct: 420 LVGDQRYRIARQWLEPLWRGQYSLLWQGGFSRTLKQGMQGDDVALLESKLSQV--LGEPE 477 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 478 RPRDQFDKDLSRKVELFQRWQNMQVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|323138693|ref|ZP_08073759.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322396048|gb|EFX98583.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 185 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 44/170 (25%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++++ L V V + V V + + + I+ NP W Sbjct: 45 FATDVEPGAIVISASQRRLFYVVGNGVAISYPVAVPKRGKD-WSGVTSISSKHVNPDWTP 103 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KI 305 P ++ + P G Sbjct: 104 PAAV---------------------------------------KADHPELPDLIPGGAPN 124 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N M + + +H T + + + GC+R+RN D+ Sbjct: 125 NPMGTRAMLLDRGE-VAIHGTTNKMRASIGT-AASYGCIRMRN-EDVADL 171 >gi|309811412|ref|ZP_07705199.1| peptidoglycan binding domain protein [Dermacoccus sp. Ellin185] gi|308434719|gb|EFP58564.1| peptidoglycan binding domain protein [Dermacoccus sp. Ellin185] Length = 370 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + +V+ L+ RL + + + +AVK FQ + LD G+V Sbjct: 71 VLTFDSRGEAVKTLQARLAL--------VVDGWYGPVTTAAVKDFQRANRLDVDGVVGPR 122 Query: 161 TLEAMNVPVDLR 172 T A++ Sbjct: 123 TWAALDASSAQP 134 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 16/115 (13%) Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPEL--------PIRPLHLGNSSVSVQRLRER 117 P+ + ++ W L + G+S V+ ++ + Sbjct: 96 YGPVTTAAVKDFQRANRLDVDGVVGPRTWAALDASSAQPSAGDVVRRGDSGPLVRAIQSK 155 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L + + F ESAV FQ HGL G+V + T A+ + D Sbjct: 156 LGV--------NVDGVFGPLTESAVMTFQRSHGLGVDGVVGAKTTYALALATDQP 202 >gi|168178160|ref|ZP_02612824.1| LycA [Clostridium botulinum NCTC 2916] gi|21702563|gb|AAM75963.1| LycA [Clostridium botulinum] gi|182671439|gb|EDT83413.1| LycA [Clostridium botulinum NCTC 2916] Length = 316 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G+ F +A+K FQ L G+V T Sbjct: 249 KQGARGGITKVIQQMLISIGYPVGSHGVDGVFGDSTVTAIKAFQRDCHLVADGIVGKETW 308 Query: 163 EAM 165 +A+ Sbjct: 309 KAL 311 >gi|306843649|ref|ZP_07476250.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. BO1] gi|306276340|gb|EFM58040.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. BO1] Length = 241 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 80 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPGGEALRYGVGIGKAGFE- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 139 WQGRANVEYKKQWPRWTPPPEMIQR----------------------------------- 163 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + Y +H +PE + +SGC+R Sbjct: 164 -KPELEKYRNGQEPGPTNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 219 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 220 LMNQDIIDLYNRVQGRAP 237 >gi|115524091|ref|YP_781002.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisA53] gi|115518038|gb|ABJ06022.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 240 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 49/186 (26%) Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 + +L L R + ++++ P L V +R + VGR D T Sbjct: 75 PVAELPARLKRQVVSYASRETPGTIVIDTPNTYLYFVLGNGRAVRYGIGVGR-DGFTWSG 133 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 I + P W P +I + Sbjct: 134 TQSITKKAEWPDWTPPPEMIARQ------------------------------------- 156 Query: 292 EPPNFIFRQDPG-KINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNI 349 ++ RQ G N + + + Y +H T P +SGC+R+ N Sbjct: 157 ---PYLPRQMAGGPGNPLGARAMYL--GGTIYRIHGTNAPQTIGTR---VSSGCIRLTN- 207 Query: 350 IDLDVW 355 D+ Sbjct: 208 EDVADL 213 >gi|332971678|gb|EGK10626.1| carboxy-terminal processing protease [Desmospora sp. 8437] Length = 482 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G P P + L +S V+ L+ L G + E+AVK FQ L Sbjct: 382 GATPPQPDKTLKRDMTSQQVKNLQLILEGLGY--RPDRTDGYYSEQTETAVKAFQRTQKL 439 Query: 152 DPSGMVDSST 161 +G+VDS T Sbjct: 440 SVTGVVDSKT 449 >gi|304316200|ref|YP_003851345.1| NLP/P60 protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777702|gb|ADL68261.1| NLP/P60 protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 226 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V L++ L G + G+ F + +AV Q + GL P G+V +T Sbjct: 28 LKYGSRGQAVVSLQQTLNRLGY--NTGGIDGIFGSATRNAVIALQKKFGLSPDGIVGPAT 85 Query: 162 LEAMNVPV 169 +N V Sbjct: 86 EAVLNRTV 93 >gi|238019607|ref|ZP_04600033.1| hypothetical protein VEIDISOL_01476 [Veillonella dispar ATCC 17748] gi|237863805|gb|EEP65095.1| hypothetical protein VEIDISOL_01476 [Veillonella dispar ATCC 17748] Length = 202 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 32/189 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L S + + E AV+ FQ GL G V Sbjct: 24 AKTIDRGQRGHHVSKVQTMLKHQGFLHDS--VDGIYGHNTEQAVRKFQKSKGLAVDGRVG 81 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 ST+ A+ + + + L + +Y V AS + Sbjct: 82 PSTMNAL----EKMETRYGGHGTE---LSHNGVPNKYSRVLTMQASA-----------YS 123 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 T I+ +IP Y++ + D+ G Sbjct: 124 AQDPGNGNYTATGSRLKKGIVSVDPKLIPL------------GTRLYIEGYGYAVADDVG 171 Query: 279 KEVFVEEVD 287 + +D Sbjct: 172 GAIKGHRID 180 >gi|194015382|ref|ZP_03053998.1| M15C subfamily peptidase [Bacillus pumilus ATCC 7061] gi|194012786|gb|EDW22352.1| M15C subfamily peptidase [Bacillus pumilus ATCC 7061] Length = 272 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 97 LPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRH 149 LP L V+ ++E L + G+ + +AVK FQ+ H Sbjct: 192 LPSGILKVTKPLTKGAGVKAVQEALAAVYYYPDKGAKNNGIDGYYGPKTANAVKRFQLMH 251 Query: 150 GLDPSGMVDSSTLEAMNV 167 GL G+ T A+ Sbjct: 252 GLVADGIYGPKTKAALEK 269 >gi|119484926|ref|ZP_01619408.1| hypothetical protein L8106_15675 [Lyngbya sp. PCC 8106] gi|119457744|gb|EAW38868.1| hypothetical protein L8106_15675 [Lyngbya sp. PCC 8106] Length = 135 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V +++ L + + F E+A+K FQ GL G+V T Sbjct: 69 LRQGSKGEDVIQIQNNLN--NYSGENLVVDGVFGNATEAAIKKFQAEKGLVVDGIVGRLT 126 Query: 162 LEAMNVP 168 A+ P Sbjct: 127 WNALLHP 133 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 ++ +L I G F A E+AVK FQ + GL G+V T+ ++ + I Sbjct: 4 IQAQLNIFG---AKLVEDGIFGATTEAAVKEFQKKSGLTVDGIVGPKTINILSQATSVPI 60 Query: 174 RQL 176 R L Sbjct: 61 RTL 63 >gi|116072542|ref|ZP_01469809.1| hypothetical protein BL107_12161 [Synechococcus sp. BL107] gi|116065064|gb|EAU70823.1| hypothetical protein BL107_12161 [Synechococcus sp. BL107] Length = 164 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 44/173 (25%), Gaps = 69/173 (39%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E+G + V +G +TP ++ + NP WV P S Sbjct: 36 ESGALRQAFPVAIGMPGWETPTGRFKVLEKIDNPVWVHPVS------------------- 76 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN--------- 319 + N + S I F+ Sbjct: 77 --------GDRVADQSSA-------------------NPLGSHWIGFHRDCRGRDAHDGD 109 Query: 320 ---------NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 +T H TP R + GCVR+ N+ L + TP Sbjct: 110 QWITIKGCTSTGFHGTPHRWTVG---RAVSHGCVRLLNENVSTLYGQVKLGTP 159 >gi|213966259|ref|ZP_03394443.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium amycolatum SK46] gi|213951111|gb|EEB62509.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium amycolatum SK46] Length = 394 Score = 60.0 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 12/74 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDL------------DPSKGLSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G L G FD + +A+ FQ Sbjct: 5 LKVGDRSPRVAEVRSTLARLGLLPNWEGSAAEENSPQWSGDDDLFDEDMRNALLAFQQSR 64 Query: 150 GLDPSGMVDSSTLE 163 G+ G++ STL Sbjct: 65 GVYADGIIRDSTLR 78 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 8/129 (6%) Query: 41 NESYHSIV---NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL 97 E +D FD + + + + I + ++ G L Sbjct: 35 AEENSPQWSGDDDLFDEDMRNALLAFQQSRGVYADGIIRD--STLRLLREASYTLGTRVL 92 Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL + V L+ L G + F +++V+ +Q+ +GL+P G+ Sbjct: 93 SYDPLSQ-MTGEDVGVLQATLQELGF--HDARVDGHFGPKTDASVREYQLNYGLEPDGIC 149 Query: 158 DSSTLEAMN 166 TL A++ Sbjct: 150 GPVTLRALS 158 >gi|13471882|ref|NP_103449.1| carnitine operon oxidoreductase [Mesorhizobium loti MAFF303099] gi|14022626|dbj|BAB49235.1| probable carnitine operon oxidoreductase [Mesorhizobium loti MAFF303099] Length = 242 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 6/163 (3%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 ++ N A + +V + + I+ Y V P Sbjct: 54 DPKTRQWTDYNRTKAYQYYKLHKQVPESFRPQLVKFRTAEQPGTIIIDGNQHFLYLVQPG 113 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + + R + + + E E+ P+ + G N + Sbjct: 114 QQAIRYGIGVGRDGFGWAGIVKVGRMAEWPTWTPPAEMVARDPKARPWANGMPGGPDNPL 173 Query: 309 ASTKIEFYSRN--NTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 + + Y + Y +H TPEP +SGC+R+ N Sbjct: 174 GARALYLYEGDHDTIYRIHGTPEPWTIG---LDVSSGCIRMNN 213 >gi|310641615|ref|YP_003946373.1| sporulation specific n-acetylmuramoyl-l-alanineamidase, spore cortex-lytic enzyme [Paenibacillus polymyxa SC2] gi|309246565|gb|ADO56132.1| Sporulation specific N-acetylmuramoyl-L-alanineamidase, spore cortex-lytic enzyme [Paenibacillus polymyxa SC2] Length = 283 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 9/161 (5%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ P + G+ V L+ RL + G + F + AVK FQ Sbjct: 44 AAQPVQPTFSSEAVDFGSYGQDVYELQSRLKLLGFF--GGKVDSHFGSSTLKAVKGFQKE 101 Query: 149 HGLDPSGMVDSST-LEAMNVPV--DLRIRQLQVNLM---RIKKLLEQKMGLRYVLVNIPA 202 G+ P G+V + T L+ +N + N + + + A Sbjct: 102 FGIRPDGVVGAKTKLKLVNATPHWKPTETPMHRNNQGSDQGQAANNNNKSDQNEETMGSA 161 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 ++ EN + + + G + + ++ N Sbjct: 162 NTMGLSENDLKIM-ANAVYGESRGEPFEGQVAVAAVILNRV 201 >gi|78184905|ref|YP_377340.1| hypothetical protein Syncc9902_1332 [Synechococcus sp. CC9902] gi|78169199|gb|ABB26296.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 181 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 43/155 (27%), Gaps = 33/155 (21%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E+G++ V +G +TP ++ + NP WV P S + +P Sbjct: 53 ESGELRQAFPVAIGMPGWETPTGRYKVLEKIDNPVWVHPVS--GDRVADQSSANPLGSHW 110 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 H I +T H TP Sbjct: 111 IGFHRDCRGRDAHD--------------------------GDQWITIKGCTSTGFHGTPH 144 Query: 329 PILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 R + GCVR+ N+ L + TP Sbjct: 145 RWTVG---RAVSHGCVRLWNENVRTLYGQVKLGTP 176 >gi|226948038|ref|YP_002803129.1| LycA [Clostridium botulinum A2 str. Kyoto] gi|40738374|gb|AAR89504.1| LycA [Clostridium botulinum A2 str. Kyoto] gi|226842291|gb|ACO84957.1| LycA [Clostridium botulinum A2 str. Kyoto] Length = 316 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 249 KQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQRDCHLVADGIVGKETW 308 Query: 163 EAM 165 +A+ Sbjct: 309 KAL 311 >gi|328910591|gb|AEB62187.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens LL3] Length = 387 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMR 148 LP +V++++ L G+ A+ A +AVK FQ Sbjct: 306 SLPAGTFKVTSPLTRGEAVKQIQTALAALHYYPDKSAKNFGIDGAYGAKTANAVKRFQSM 365 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ T + Sbjct: 366 YGLTADGIYGPKTKAKIEA 384 >gi|254694850|ref|ZP_05156678.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 3 str. Tulya] gi|261215181|ref|ZP_05929462.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|260916788|gb|EEX83649.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] Length = 241 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 80 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPGGEALRYGVGIGKAGFE- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 139 WQGRANVEYKKQWPRWTPPPEMIQR----------------------------------- 163 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + Y +H +PE + +SGC+R Sbjct: 164 -KPELEKYRNGQEPGPTNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 219 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 220 LMNQDIIDLYNRVQGKAP 237 >gi|186684767|ref|YP_001867963.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467219|gb|ACC83020.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 380 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 ++ L G+ VQRL+ +L G + + ++ E AV FQ Sbjct: 37 EVAQASSTVTASPAVLRYGSRKSDVQRLQTQLKQLGYY--NGVVDGQYNPSTEIAVAEFQ 94 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 GL G+ +T + + + + + Sbjct: 95 KAKGLKVDGLAGLATRRRLQAALVAKNQIIT 125 >gi|17232825|ref|NP_489373.1| hypothetical protein alr5333 [Nostoc sp. PCC 7120] gi|17134472|dbj|BAB77032.1| alr5333 [Nostoc sp. PCC 7120] Length = 130 Score = 60.0 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ ++ L G + L + AV FQ L G V T Sbjct: 56 LRPGSRGQAVRDVQAVLQSLGFY--NGALDGIYGLRTARAVAAFQRSQRLVGDGRVGKLT 113 Query: 162 LEAMNVP 168 +A+ Sbjct: 114 WQALRNS 120 >gi|300853874|ref|YP_003778858.1| D-glutamyl-meso-diaminopimelate peptidase [Clostridium ljungdahlii DSM 13528] gi|300433989|gb|ADK13756.1| D-glutamyl-meso-diaminopimelate peptidase [Clostridium ljungdahlii DSM 13528] Length = 423 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+ V +++ L G + + E AVK FQ +GL P G++ S+T Sbjct: 4 FKLGSRGTQVMKIQAVLRKIGY--NLNTIDGIYGRETEQAVKNFQKNNGLAPDGIIGSNT 61 Query: 162 LEAMN 166 + Sbjct: 62 YRVLR 66 >gi|254473519|ref|ZP_05086915.1| protein ybis [Pseudovibrio sp. JE062] gi|211957231|gb|EEA92435.1| protein ybis [Pseudovibrio sp. JE062] Length = 235 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 45/182 (24%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 R++ + V+++ + L V+ R V VGR + Sbjct: 86 RRIPKQFLPTTVSYNTSHAPGTVVIDTTSRYLYLVQANGKARRYGVGVGRPGFE-WAGVH 144 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 ++ R P W P ++++ Sbjct: 145 KVTRKREWPDWRPPAEMLKRQ--------------------------------------- 165 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 PN G N + + + +H + EP +SGC+R+RN D+ Sbjct: 166 PNLPRYMPGGPRNPLGARALYLG-STLYRIHGSNEPWTIGQ---AVSSGCIRMRN-EDVA 220 Query: 354 VW 355 Sbjct: 221 EL 222 >gi|23500965|ref|NP_697092.1| putative lipoprotein [Brucella suis 1330] gi|62289036|ref|YP_220829.1| lipoprotein [Brucella abortus bv. 1 str. 9-941] gi|82698973|ref|YP_413547.1| hypothetical protein BAB1_0047 [Brucella melitensis biovar Abortus 2308] gi|148559068|ref|YP_001258095.1| putative lipoprotein [Brucella ovis ATCC 25840] gi|161618039|ref|YP_001591926.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|163842326|ref|YP_001626730.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis ATCC 23445] gi|189023311|ref|YP_001934079.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus S19] gi|225626596|ref|ZP_03784635.1| lipoprotein [Brucella ceti str. Cudo] gi|237814524|ref|ZP_04593522.1| lipoprotein [Brucella abortus str. 2308 A] gi|254690361|ref|ZP_05153615.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 6 str. 870] gi|254696479|ref|ZP_05158307.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 2 str. 86/8/59] gi|254700864|ref|ZP_05162692.1| ErfK/YbiS/YcfS/YnhG [Brucella suis bv. 5 str. 513] gi|254705231|ref|ZP_05167059.1| ErfK/YbiS/YcfS/YnhG [Brucella suis bv. 3 str. 686] gi|254707249|ref|ZP_05169077.1| ErfK/YbiS/YcfS/YnhG [Brucella pinnipedialis M163/99/10] gi|254709207|ref|ZP_05171018.1| ErfK/YbiS/YcfS/YnhG [Brucella pinnipedialis B2/94] gi|254731391|ref|ZP_05189969.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 4 str. 292] gi|256030731|ref|ZP_05444345.1| ErfK/YbiS/YcfS/YnhG [Brucella pinnipedialis M292/94/1] gi|256045839|ref|ZP_05448715.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 1 str. Rev.1] gi|256060192|ref|ZP_05450372.1| ErfK/YbiS/YcfS/YnhG [Brucella neotomae 5K33] gi|256112556|ref|ZP_05453477.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 3 str. Ether] gi|256158739|ref|ZP_05456614.1| ErfK/YbiS/YcfS/YnhG [Brucella ceti M490/95/1] gi|256254136|ref|ZP_05459672.1| ErfK/YbiS/YcfS/YnhG [Brucella ceti B1/94] gi|256258615|ref|ZP_05464151.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 9 str. C68] gi|256368516|ref|YP_003106022.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|260169635|ref|ZP_05756446.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. F5/99] gi|260546330|ref|ZP_05822070.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260563130|ref|ZP_05833616.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|260567303|ref|ZP_05837773.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|260755906|ref|ZP_05868254.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260759130|ref|ZP_05871478.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260760855|ref|ZP_05873198.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884929|ref|ZP_05896543.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|261221280|ref|ZP_05935561.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|261314732|ref|ZP_05953929.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261316710|ref|ZP_05955907.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261324169|ref|ZP_05963366.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261751375|ref|ZP_05995084.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|261755940|ref|ZP_05999649.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|261759166|ref|ZP_06002875.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|265987780|ref|ZP_06100337.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|265992254|ref|ZP_06104811.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993997|ref|ZP_06106554.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|265997241|ref|ZP_06109798.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|297247455|ref|ZP_06931173.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 5 str. B3196] gi|23346823|gb|AAN29007.1| lipoprotein, putative [Brucella suis 1330] gi|62195168|gb|AAX73468.1| lipoprotein, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82615074|emb|CAJ10003.1| ErfK/YbiS/YcfS/YnhG:Twin-arginine translocation pathway signal [Brucella melitensis biovar Abortus 2308] gi|148370325|gb|ABQ60304.1| putative lipoprotein [Brucella ovis ATCC 25840] gi|161334850|gb|ABX61155.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|163673049|gb|ABY37160.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis ATCC 23445] gi|189018883|gb|ACD71605.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus S19] gi|225618253|gb|EEH15296.1| lipoprotein [Brucella ceti str. Cudo] gi|237789361|gb|EEP63571.1| lipoprotein [Brucella abortus str. 2308 A] gi|255998674|gb|ACU47073.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|260096437|gb|EEW80313.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260153146|gb|EEW88238.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|260156821|gb|EEW91901.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|260669448|gb|EEX56388.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260671287|gb|EEX58108.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676014|gb|EEX62835.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260874457|gb|EEX81526.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|260919864|gb|EEX86517.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|261295933|gb|EEX99429.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261300149|gb|EEY03646.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261303758|gb|EEY07255.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261739150|gb|EEY27146.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|261741128|gb|EEY29054.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|261745693|gb|EEY33619.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|262551709|gb|EEZ07699.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|262764978|gb|EEZ10899.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|263003320|gb|EEZ15613.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|264659977|gb|EEZ30238.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|297174624|gb|EFH33971.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 5 str. B3196] Length = 241 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 80 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPGGEALRYGVGIGKAGFE- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 139 WQGRANVEYKKQWPRWTPPPEMIQR----------------------------------- 163 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + Y +H +PE + +SGC+R Sbjct: 164 -KPELEKYRNGQEPGPTNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 219 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 220 LMNQDIIDLYNRVQGKAP 237 >gi|114567038|ref|YP_754192.1| hypothetical protein Swol_1518 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337973|gb|ABI68821.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 241 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPS 154 L R L G+ V+ L+ L I D S F E+AVK FQ L Sbjct: 6 TLGSRVLRRGDEGTDVELLQNLLKILPDPIGSGIKEKGVFGKETENAVKKFQKYFNLAID 65 Query: 155 GMVDSSTLEAMNVPVDLRI 173 G+V ++T + VP I Sbjct: 66 GIVGANTFLFLGVPTASYI 84 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 18/163 (11%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 + G + K Y + V+++ A + + + + + + ++ + Sbjct: 90 LFGARILQKGSYGYDVWVL------QNRLATTAKKFADTLGQPANRNFDSKTESAVKMFQ 143 Query: 61 MGIDSDIP-IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLI 119 + + I+ +T+ Q IL +G W N V L+ L Sbjct: 144 RDVHLEGDGIVGPQTVYQLYNYATMGARILQKGRWDR---------NQGYDVYWLQRNLQ 194 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G L F + E+AVK Q G+ G+V ++T Sbjct: 195 ELGYY--QGKLDGKFGSQTEAAVKKLQEASGIKVDGIVGANTF 235 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 9/115 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L G+ V L+ RL + + FD+ ESAVK+FQ L+ G Sbjct: 93 ARILQKGSYGYDVWVLQNRLATTAKKFADTLGQPANRNFDSKTESAVKMFQRDVHLEGDG 152 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 +V T+ + + R L + + Q + ++ N+ L + Sbjct: 153 IVGPQTVYQLYNYATMGARIL----QKGRWDRNQGYDVYWLQRNL--QELGYYQG 201 >gi|306842658|ref|ZP_07475303.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. BO2] gi|306287193|gb|EFM58690.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. BO2] Length = 241 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 80 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPGGEALRYGVGIGKAGFE- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 139 WQGRANVEYKKQWPRWTPPPEMIQR----------------------------------- 163 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + Y +H +PE + +SGC+R Sbjct: 164 -KPELEKYRNGQEPGPTNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 219 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 220 LMNQDIIDLYNRVQGKAP 237 >gi|282866653|ref|ZP_06275695.1| Peptidase M15A [Streptomyces sp. ACTE] gi|282558555|gb|EFB64115.1| Peptidase M15A [Streptomyces sp. ACTE] Length = 245 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G + V +L+ R ++G + + ++ +AVK FQ +GL G+ Sbjct: 39 TRTLSSGATGNDVTQLQIR--VAGYPGYNSVLAVDGSYGPATTAAVKRFQAAYGLAADGV 96 Query: 157 VDSSTLEAM 165 +T + Sbjct: 97 AGPATQAKL 105 >gi|295100343|emb|CBK97888.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii L2-6] Length = 159 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 A Y G P L G++ V+ ++++L G F +AV Sbjct: 78 ARYT--AKHGLIVPYPGIVLRSGSAGGCVRLVQQKLNTDG---ERLTTDGRFGTSTVAAV 132 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 K +Q RH L G V T E M Sbjct: 133 KRYQTRHSLTSDGSVGKDTWEKM 155 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+S V ++ L D + + F A E AV+ FQ+R+GL G V Sbjct: 10 IRRGSSGPDVALVQTWLNGIRDSCTWYAALTVDGTFGANAEKAVREFQLRYGLKEDGKVG 69 Query: 159 SSTLEAM 165 ++T + Sbjct: 70 ANTWNVL 76 >gi|302558624|ref|ZP_07310966.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302476242|gb|EFL39335.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 223 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + GGW + G V ++ + G + AVK F Sbjct: 86 RGVDLGGGWSRID-----PGARGRRVAAIQYLMTQRGY---GLTADGYYGPVSAGAVKRF 137 Query: 146 QMRHGLDPSGMVDSSTL 162 Q GL G V +T Sbjct: 138 QAARGLVADGQVGPATW 154 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 22/150 (14%) Query: 23 GLSLVEK--PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 G+ L I + + + + + D +S + + + Sbjct: 87 GVDLGGGWSRIDPGARGRRVAAIQYLMTQRGY-------GLTADGYYGPVSAGAVKRFQA 139 Query: 81 AIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 A + +++ G WP L L G++ V+ L+ L G F Sbjct: 140 A----RGLVADGQVGPATWPHLVY-TLRQGHAGHHVRALQTVLDKHG---AGLVADGGFG 191 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + SAV+ +Q + L G+ + T A+ Sbjct: 192 SVTASAVRAYQSVNRLVVDGVAGAVTWRAL 221 >gi|291550822|emb|CBL27084.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus torques L2-14] Length = 430 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+ V++++E L +I+G P + E+AV+ FQ GL + Sbjct: 346 PGYTLEQGSQGPKVRQIQEELNVIAGAYPEIPKLTEDGIYGPETEAAVRKFQSIFGLPVT 405 Query: 155 GMVDSSTLEAMN 166 G +D T ++ Sbjct: 406 GEIDYKTWYKIS 417 >gi|87303205|ref|ZP_01086003.1| putative bacteriophage lysozyme [Synechococcus sp. WH 5701] gi|87282372|gb|EAQ74332.1| putative bacteriophage lysozyme [Synechococcus sp. WH 5701] Length = 171 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 3/94 (3%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +A + A + + G P L +G SV +L+ L + G S + Sbjct: 78 RVLAGLVRRRAEERAMFISGIQPVNDQAFLVVGEKGESVVKLQTSLNLHG---ESIQIDG 134 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F + E AVK FQ + GL G+V T E + Sbjct: 135 IFGPHTEDAVKRFQAKSGLVSDGIVGPRTWEKLE 168 >gi|209886166|ref|YP_002290023.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] gi|209874362|gb|ACI94158.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] Length = 387 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 65/221 (29%), Gaps = 55/221 (24%) Query: 150 GLDPSGMVD----SSTLEAMNVPVDLRIRQ---LQVNLMRIKKLLEQKMGLRYVLVNIPA 202 G+ G + + A+ V + L L R + + K ++V+ Sbjct: 143 GMPQQGRIGANGQPVQIAALPVEDQPEVGPRPELPARLRRQEVNFKTKEPAGTIVVDTAN 202 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L + +R V VGR D T +I R P W P +I++ Sbjct: 203 TQLYYILGNGRAVRYGVRVGR-DGFTWAGVQKITRKAEWPDWHPPPEMIERQ-------- 253 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 P G N + + + + Y Sbjct: 254 -------------------------------PYLPRFMAGGDGNPLGARAMYLGN--TVY 280 Query: 323 -MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +H T +P F +SGC+ + ++ DL + T Sbjct: 281 RIHGTNQPSTIGK---FVSSGCIGMLNEDVEDLFERVKVGT 318 >gi|150388378|ref|YP_001318427.1| peptidoglycan binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948240|gb|ABR46768.1| Peptidoglycan-binding domain 1 protein [Alkaliphilus metalliredigens QYMF] Length = 320 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V+RL+ L +G + F + AV FQ + G+V T Sbjct: 130 LRVGSRGPDVERLQRLLRDNGY--DPGPIDGIFGTRTQLAVIAFQRDLNIVADGIVGPRT 187 Query: 162 LEAMNVP 168 + V Sbjct: 188 WTGLGVD 194 >gi|299538548|ref|ZP_07051831.1| spore cortex-lytic enzyme precursor [Lysinibacillus fusiformis ZC1] gi|298726135|gb|EFI66727.1| spore cortex-lytic enzyme precursor [Lysinibacillus fusiformis ZC1] Length = 271 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + F A++ FQ +GL G Sbjct: 26 AFSDQQITRGAYGDDVVELQARLQYLGFYKS--KIDGKFGYNTYWALRNFQENYGLPVDG 83 Query: 156 MVDSSTLEAMNVPVD 170 + + T +A+ D Sbjct: 84 IAGAKTKKALTGNSD 98 >gi|323136681|ref|ZP_08071762.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322397998|gb|EFY00519.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 201 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 8/129 (6%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV-- 286 P+ ++ Y+V+P + +A + + + + E + + +++ Sbjct: 61 PVGSIVVDSRHHFLYYVMPGGKAVRYGVATGQDAMGWTGRAYVGAMQEWPRWIPPKDMLE 120 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGC 343 W +P G N + S + Y ++ Y +H T EP +SGC Sbjct: 121 RWPHLQPTADAGGLPGGPDNPLGSRALYLYQDGKDTLYRIHGTNEPEKIGQG---VSSGC 177 Query: 344 VRVRNIIDL 352 +R+R+I + Sbjct: 178 IRMRDIDAI 186 >gi|153824309|ref|ZP_01976976.1| general secretion pathway protein A [Vibrio cholerae B33] gi|126518168|gb|EAZ75393.1| general secretion pathway protein A [Vibrio cholerae B33] Length = 259 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 2/105 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 E + + + W R L G V L +L L + Sbjct: 154 ERYRIARQWLEPLWNGQFSLLWQASFSRTLKQGMQGADVALLESKLAQV--LGEPERPRE 211 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 212 QFDKDLSRKVELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLK 256 >gi|239982441|ref|ZP_04704965.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces albus J1074] gi|291454288|ref|ZP_06593678.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces albus J1074] gi|729061|sp|P00733|CBPM_STRAL RecName: Full=Zinc D-Ala-D-Ala carboxypeptidase; AltName: Full=D-alanyl-D-alanine carboxypeptidase; AltName: Full=Metallo DD-peptidase; AltName: Full=Zn DD-peptidase; Flags: Precursor gi|288967|emb|CAA39319.1| metallo (Zn) DD-peptidase [Streptomyces albus] gi|291357237|gb|EFE84139.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces albus J1074] gi|228101|prf||1717223A DD peptidase Length = 255 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V++L+ R ++G + F ++AV+ FQ +GL G+ Sbjct: 49 SGTLSEGSSGEAVRQLQIR--VAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGI 106 Query: 157 VDSSTLEAM 165 +T + Sbjct: 107 AGPATFNKI 115 >gi|157831772|pdb|1LBU|A Chain A, Hydrolase Metallo (Zn) Dd-Peptidase Length = 213 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V++L+ R ++G + F ++AV+ FQ +GL G+ Sbjct: 7 SGTLSEGSSGEAVRQLQIR--VAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGI 64 Query: 157 VDSSTLEAM 165 +T + Sbjct: 65 AGPATFNKI 73 >gi|282897905|ref|ZP_06305900.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] gi|281197049|gb|EFA71950.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] Length = 201 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P++P L G+S ++++ L+ LI +G + + F E+A+K FQ + L Sbjct: 133 PQMP--TLRFGDSGLAIRVLQRLLISNGY---NVRVDGVFGPLTETAIKAFQSQRDLSVD 187 Query: 155 GMVDSSTLEAM 165 G+V +T + Sbjct: 188 GIVGPNTWYQL 198 >gi|182677449|ref|YP_001831595.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633332|gb|ACB94106.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 258 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 39/197 (19%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ ++ +R + + + ++++ L VE G +R V VGR Sbjct: 80 PGTKLSEIDPAFLRKEVDYKTNEPVGTIVIDPQHHYLYHVEEGGKAMRYGVGVGREGFA- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + IN P W P+ ++Q+ L++ L+ Sbjct: 139 WSGEATINFKREWPDWYPPKEMLQRQ--PELKKKMAQLQSG------------------- 177 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + + + + + +H T EP +SGC+R Sbjct: 178 ---------LGMAGGPGNPLGVRAMYLWQGNVDTLFRIHGTVEPWSIGKS---VSSGCIR 225 Query: 346 V--RNIIDLDVWLLKDT 360 + ++++DL + T Sbjct: 226 MVNQDVVDLYQRVPVGT 242 >gi|78049967|ref|YP_366142.1| hypothetical protein XCV4411 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038397|emb|CAJ26142.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 615 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 11/147 (7%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMG----IDSDIPIISKETIAQTEKAIAFYQD 87 + D + D + A +D + S+ T +KA+ + Sbjct: 235 THTYYDGPKAANVAQNYEDAYPQNQAALDRAHLKVSGRNFDPSSERTDPDVQKAL---EL 291 Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKL 144 + + G L G+S V++L L G D + F+A + AV+ Sbjct: 292 VNASPGRQAAQSHILKEGSSGREVRKLESNLSALGYGDSDGHALQIDQKFNASTKQAVEA 351 Query: 145 FQMRHGL-DPSGMVDSSTLEAMNVPVD 170 FQ +GL G +TL+A+ Sbjct: 352 FQWANGLTPVDGKAGPATLDAIGRQAR 378 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 42/190 (22%) Query: 47 IVNDRFDNFLARVDMG---IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH 103 ++ +F+ + + P+ K A + + + + Sbjct: 336 QIDQKFNASTKQAVEAFQWANGLTPVDGKAGPATLDAIGRQARGLQ---------SDLIE 386 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG + + LR + G L + AV FQ +GL +G+ D TL+ Sbjct: 387 LGFTGADSKPLR----VDGYL----------GSGTRQAVSAFQEANGLPVTGIADRGTLD 432 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 ++ Q+Q N G R+ RS ++ R Sbjct: 433 SL---ARQTAEQIQTNDPEQA--PGTYRGHRHTGTMEA-----------PSPRSDEVLAR 476 Query: 224 VDRQTPILHS 233 P+L S Sbjct: 477 PANTPPLLSS 486 >gi|327440243|dbj|BAK16608.1| uncharacterized protein [Solibacillus silvestris StLB046] Length = 111 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 10/75 (13%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 GK + + + + +H T P Sbjct: 31 GKILTPTPSGTYTIINKQL------NPPAPFGVLWMGLSKPH-YGIHGTNNPASIGKNR- 82 Query: 338 FETSGCVRVRNIIDL 352 + GC+R+ N L Sbjct: 83 --SHGCIRMFNHDVL 95 >gi|324326719|gb|ADY21979.1| spore cortex-lytic enzyme [Bacillus thuringiensis serovar finitimus YBT-020] Length = 253 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYDKSTANKGNSGGTAQENKPSQNKGTNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|226311843|ref|YP_002771737.1| spore cortex-lytic enzyme precursor [Brevibacillus brevis NBRC 100599] gi|226094791|dbj|BAH43233.1| probable spore cortex-lytic enzyme precursor [Brevibacillus brevis NBRC 100599] Length = 261 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 12/203 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST- 161 +G V+ ++ RL G + + F A++ FQ GL G++ + T Sbjct: 38 KVGEEGSDVREMQYRLKHLGFY--TGKVDGVFGWRSYWALRNFQYEFGLPIDGVLGAQTK 95 Query: 162 --LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 L L V + P + + + L + Sbjct: 96 VKLYNATKNYKPTASDLGVPQTATPAPSTPSTPSTPSAPSKPTYHVAGISENDLRLMANA 155 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVI--PRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + G + I + ++ N P + + D I + + Sbjct: 156 VYGESRGEPYIGQVAVAAVILNRTKNASFPNTPAGVIFEPRA---FTAVADGQIWLTPNE 212 Query: 278 --GKEVFVEEVDWNSPEPPNFIF 298 K V W+ + + F Sbjct: 213 QAKKAVNDALKGWDPTDGAIYYF 235 >gi|23097729|ref|NP_691195.1| cell wall associated protein [Oceanobacillus iheyensis HTE831] gi|22775953|dbj|BAC12230.1| cell wall associated protein (cell wall lytic activity) [Oceanobacillus iheyensis HTE831] Length = 276 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + G+ S +V+ L+E L G + + F E AV+ +Q L G+V Sbjct: 65 GLIQRGDVSSAVEDLQEELQDQGYYTYN--IDGIFGPITEEAVREYQADQDLQVDGIVGP 122 Query: 160 STLEAMNVPVDLRIRQLQV 178 +T +A+ V + +L + Sbjct: 123 NTKDALAVQNENSDEELNI 141 >gi|30262721|ref|NP_845098.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Ames] gi|47528039|ref|YP_019388.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. 'Ames Ancestor'] gi|49185569|ref|YP_028821.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Sterne] gi|49479156|ref|YP_036844.1| spore cortex-lytic enzyme [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65320051|ref|ZP_00393010.1| COG3773: Cell wall hydrolyses involved in spore germination [Bacillus anthracis str. A2012] gi|165868424|ref|ZP_02213084.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0488] gi|167631745|ref|ZP_02390072.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0442] gi|167637623|ref|ZP_02395902.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0193] gi|170685440|ref|ZP_02876664.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0465] gi|170704742|ref|ZP_02895208.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0389] gi|177649478|ref|ZP_02932480.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0174] gi|190565234|ref|ZP_03018154.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis Tsiankovskii-I] gi|227814439|ref|YP_002814448.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. CDC 684] gi|228915357|ref|ZP_04078950.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229601515|ref|YP_002867030.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0248] gi|254685313|ref|ZP_05149173.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. CNEVA-9066] gi|254722722|ref|ZP_05184510.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A1055] gi|254737769|ref|ZP_05195472.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Western North America USA6153] gi|254743057|ref|ZP_05200742.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Kruger B] gi|254752083|ref|ZP_05204120.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Vollum] gi|254760604|ref|ZP_05212628.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Australia 94] gi|301054274|ref|YP_003792485.1| spore cortex-lytic enzyme [Bacillus anthracis CI] gi|30257353|gb|AAP26584.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Ames] gi|47503187|gb|AAT31863.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. 'Ames Ancestor'] gi|49179496|gb|AAT54872.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Sterne] gi|49330712|gb|AAT61358.1| spore cortex-lytic enzyme [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715150|gb|EDR20667.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0488] gi|167514172|gb|EDR89539.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0193] gi|167532043|gb|EDR94679.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0442] gi|170130543|gb|EDS99404.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0389] gi|170670800|gb|EDT21539.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0465] gi|172084552|gb|EDT69610.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0174] gi|190563261|gb|EDV17226.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis Tsiankovskii-I] gi|227002927|gb|ACP12670.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. CDC 684] gi|228844300|gb|EEM89358.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265923|gb|ACQ47560.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0248] gi|300376443|gb|ADK05347.1| spore cortex-lytic enzyme [Bacillus cereus biovar anthracis str. CI] Length = 253 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYDKSTANKGNSGGTAQENKPSQNKGTNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|297516700|ref|ZP_06935086.1| hypothetical protein EcolOP_03614 [Escherichia coli OP50] Length = 207 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 45/169 (26%), Gaps = 44/169 (26%) Query: 202 AASLEAVE-NGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L + + +G+ R+TP + + R P W + ++ Sbjct: 1 EMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRRE------ 54 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + + G N M I Sbjct: 55 -----------------------------YAKRGESLPAFVPAGPDNPMGLYAIYIGRLY 85 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 86 AI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQI 127 >gi|119898071|ref|YP_933284.1| hypothetical protein azo1780 [Azoarcus sp. BH72] gi|119670484|emb|CAL94397.1| hypothetical protein azo1780 [Azoarcus sp. BH72] Length = 208 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKG-----LSVAFDAYVESAVKLFQMRHGLDPSG 155 L LG++ V+ L++RL+ + L P + F + AV +Q HGL P G Sbjct: 4 VLKLGSTGDLVRLLQQRLVEAEALPPEDVQGHSNIDGQFGRITQDAVIGYQTAHGLTPDG 63 Query: 156 MVDSST 161 +V T Sbjct: 64 LVGHRT 69 >gi|229916617|ref|YP_002885263.1| carboxyl-terminal protease [Exiguobacterium sp. AT1b] gi|229468046|gb|ACQ69818.1| carboxyl-terminal protease [Exiguobacterium sp. AT1b] Length = 467 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ +V L + L G G + + +AVK FQ +GL+ SG VD Sbjct: 378 ESLQVGDYGDAVSNLHKILTGIGY--EPGGQPGYYGDTMANAVKAFQTDNGLEASGTVDE 435 Query: 160 STLEAMNV 167 T A+ Sbjct: 436 ETASALEA 443 >gi|218530732|ref|YP_002421548.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254561701|ref|YP_003068796.1| hypothetical protein METDI3291 [Methylobacterium extorquens DM4] gi|218523035|gb|ACK83620.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254268979|emb|CAX24940.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 223 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 46/167 (27%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + ++V+ L V G +R V VGR T ++I Sbjct: 82 REVVEYNSRYAPGTIVVSTAERRLYYVMPGGQAVRYGVGVGRPG-FTWSGVNKITAKREW 140 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++I + P+ Sbjct: 141 PGWTPPAAMIARR---------------------------------------PDLPRYMA 161 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP +SGC+R+ N Sbjct: 162 GGIENPLGARAMYIGKSE-YRIHGSNEPDTIGQ---AVSSGCIRMTN 204 >gi|254718356|ref|ZP_05180167.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. 83/13] gi|265983317|ref|ZP_06096052.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306839587|ref|ZP_07472391.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NF 2653] gi|264661909|gb|EEZ32170.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306405285|gb|EFM61560.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NF 2653] Length = 206 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 33 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 93 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 186 >gi|237786645|ref|YP_002907350.1| cell wall hydrolase [Corynebacterium kroppenstedtii DSM 44385] gi|237759557|gb|ACR18807.1| cell wall hydrolase [Corynebacterium kroppenstedtii DSM 44385] Length = 392 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V +L+ L G + F SA+K +Q +GL G+ T++A+ Sbjct: 98 MQGDDVAQLQSHLQELGFYSSQ--IDGQFSRDTYSALKNYQRDYGLTVDGVCGPDTMKAL 155 Query: 166 N 166 + Sbjct: 156 S 156 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 10/74 (13%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDL----------DPSKGLSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G L D FD ++SA++ FQ + Sbjct: 3 ENLQVGDKSPRVAEVRTILTKVGLLKHPVSEHTSTDQWADGDDDFDYELQSALRAFQQQR 62 Query: 150 GLDPSGMVDSSTLE 163 G+ G+++ TL Sbjct: 63 GVLADGVINDHTLR 76 >gi|17228662|ref|NP_485210.1| lysin [Nostoc sp. PCC 7120] gi|17130513|dbj|BAB73124.1| lysin [Nostoc sp. PCC 7120] Length = 242 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V L+E LI + F E+AVK FQ R + P G+V+ Sbjct: 4 TETLRKGSKGSDVSELQEILIKLKF--DPGRIDGDFGNKTEAAVKQFQQRQSITPDGVVE 61 Query: 159 SSTLEAMNVPVDLRIRQLQV 178 +T A+N + +I ++ Sbjct: 62 INTRNALNKAIQRQIEIAKL 81 >gi|332798862|ref|YP_004460361.1| ErfK/YbiS/YcfS/YnhG family protein [Tepidanaerobacter sp. Re1] gi|332696597|gb|AEE91054.1| ErfK/YbiS/YcfS/YnhG family protein [Tepidanaerobacter sp. Re1] Length = 176 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWS 364 S + Y +H T +P FE+SGC+R+ N + + W+ T + Sbjct: 38 FGSRWMRLSVPWGIYGIHGTNKPWSIGT---FESSGCIRMYNTHVEQVYEWVTIGTKVFM 94 Query: 365 RYHIE 369 ++ Sbjct: 95 VGGVD 99 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V +++RL G + ++ + AV FQ GL PSG VD++ Sbjct: 108 TLSQGSRGSDVLEVQKRLAGYGFY--NGAYDGIYEHETQKAVLAFQKAKGLYPSGKVDAA 165 Query: 161 TLEAMNVP 168 T + + + Sbjct: 166 TYKELGIS 173 >gi|239927067|ref|ZP_04684020.1| putative peptidodoglycan-binding membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291435412|ref|ZP_06574802.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291338307|gb|EFE65263.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 227 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDS 159 L G+ V L+ RL+ D+ +DA + +AV FQ+ +G+ G+ Sbjct: 144 LREGDFGPEVTELQRRLLRIPDVYREGTTDGRYDAALSAAVARFQLWYGVRGDETGVYGD 203 Query: 160 STLEAMN 166 T A+ Sbjct: 204 DTRLALE 210 >gi|163851980|ref|YP_001640023.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163663585|gb|ABY30952.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 223 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 44/162 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++V+ L V G +R V VGR T ++I P W Sbjct: 87 YNSRYAPGTIVVSTAERRLYYVMPGGQAVRYGVGVGRPG-FTWSGVNKITAKREWPGWTP 145 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P ++I + P+ G N Sbjct: 146 PAAMIARR---------------------------------------PDLPRYMAGGIEN 166 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + + +H + EP +SGC+R+ N Sbjct: 167 PLGARAMYIGKSE-YRIHGSNEPDTIGQ---AVSSGCIRMTN 204 >gi|138896847|ref|YP_001127300.1| hypothetical protein GTNG_3210 [Geobacillus thermodenitrificans NG80-2] gi|196250423|ref|ZP_03149115.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. G11MC16] gi|134268360|gb|ABO68555.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210082|gb|EDY04849.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. G11MC16] Length = 165 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 36/101 (35%), Gaps = 11/101 (10%) Query: 268 DNNIHMIDEKGKEVFVEEVDW----NSPEPPNFIFR-QDPGKINAMASTKIEFYSRNNTY 322 ++ ++G+ + V + +F+ + P + + + Sbjct: 64 SRRQLILKDRGRTIRTYPVGVGKMVTATPVGDFVIVNRQPNPGGPFGAMWLSLSKIH-YG 122 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 +H T +P + + GC+R+ N +++L + T Sbjct: 123 IHGTNDPSSIGK---YVSRGCIRMHNKDVLELASIVPNGTE 160 >gi|110632721|ref|YP_672929.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110283705|gb|ABG61764.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 266 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 40/162 (24%), Gaps = 40/162 (24%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++V+ L V R V VG+ D ++ P W Sbjct: 126 YDGPQAPGTIVVDTKERFLYLVLKDGQARRYGVGVGK-DGFGWTGTHKVTAKREWPDWRP 184 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P +I ++ G N Sbjct: 185 PAEMIARE-----------------------------------RKNGKILPTLVKGGPQN 209 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + + +H T P +SGC+R+RN Sbjct: 210 PLGARALYLG-STLYRIHGTNAPWTIGQ---AVSSGCIRMRN 247 >gi|169834766|ref|YP_001715696.1| LycA [Clostridium botulinum A3 str. Loch Maree] gi|169408873|gb|ACA57283.1| LycA [Clostridium botulinum A3 str. Loch Maree] Length = 316 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 249 KQGERGGITKVIQQMLINIGYPVGSHGADGVFGDDTVTAIKAFQRDCHLVVDGIVGKETW 308 Query: 163 EAM 165 EA+ Sbjct: 309 EAL 311 >gi|168184756|ref|ZP_02619420.1| glycosyl hydrolase, family 25/peptidoglycan binding domain protein [Clostridium botulinum Bf] gi|182672158|gb|EDT84119.1| glycosyl hydrolase, family 25/peptidoglycan binding domain protein [Clostridium botulinum Bf] Length = 316 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 249 KQGERGGITKVIQQMLINIGYPVGSHGADGVFGDDTVTAIKAFQRDCHLVVDGIVGKETW 308 Query: 163 EAM 165 EA+ Sbjct: 309 EAL 311 >gi|119383274|ref|YP_914330.1| ErfK/YbiS/YcfS/YnhG family protein [Paracoccus denitrificans PD1222] gi|119373041|gb|ABL68634.1| ErfK/YbiS/YcfS/YnhG family protein [Paracoccus denitrificans PD1222] Length = 192 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Query: 301 DPGKINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 G N + + + + + +H T EP R ++GC+R+RN ++DL Sbjct: 125 PGGPTNPLGARALYLYDAKGNDTSIRIHGTTEPNSIG---RAVSNGCIRMRNEAVMDLFE 181 Query: 355 WLLKDTPTW 363 + TP + Sbjct: 182 QVPIGTPVY 190 >gi|330466869|ref|YP_004404612.1| putative muramoyl-pentapeptide carboxypeptidase [Verrucosispora maris AB-18-032] gi|328809840|gb|AEB44012.1| putative muramoyl-pentapeptide carboxypeptidase [Verrucosispora maris AB-18-032] Length = 249 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G + V++L+ R +SG L A+ SAV FQ +GL G+ Sbjct: 44 GRTLSSGMTGEDVRQLQIR--VSGYPGYGAVLTLDGAYGPATRSAVIRFQQAYGLAADGV 101 Query: 157 VDSSTLEAM 165 + T + Sbjct: 102 AGAQTFNQI 110 >gi|294498738|ref|YP_003562438.1| L-alanyl-D-glutamate peptidase [Bacillus megaterium QM B1551] gi|294348675|gb|ADE69004.1| L-alanyl-D-glutamate peptidase [Bacillus megaterium QM B1551] Length = 231 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G VQ ++ LI G S G F + AVK FQ L G+V T Sbjct: 160 IEYGGRGNHVQLIQRMLIHLGY-SLSGGADGIFGSSTLKAVKAFQQALYLQVDGIVGPKT 218 Query: 162 LEAM 165 LE + Sbjct: 219 LEKL 222 >gi|308172757|ref|YP_003919462.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] gi|307605621|emb|CBI41992.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] Length = 385 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP +V++++ L P+ G+ A+ +AVK FQ+ Sbjct: 304 PLPDGVFKVTNPLIRGAAVKQIQTALAALYYYPDKGAPNNGIDGAYGPKTANAVKRFQLM 363 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ T + Sbjct: 364 NGLTADGIYGPKTKAKLET 382 >gi|220920237|ref|YP_002495538.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219944843|gb|ACL55235.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 263 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 46/183 (25%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 R L R V+++ + L V+ G +R + VGR T Sbjct: 114 RALDGRYRRQIVPYAGGQKPGTVVIDTTSRFLYLVQPGGQAIRYGIGVGRPG-FTWAGIK 172 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 I + P W P ++++ Sbjct: 173 TITQKREWPDWTPPPEMLRRR--------------------------------------- 193 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIID 351 P+ + G N + + + S +H T EP +SGC+R+ ++ID Sbjct: 194 PDLPRHMEGGPANPLGARALYLGSS-LYRIHGTNEPHTIGQS---VSSGCIRMMNEDVID 249 Query: 352 LDV 354 L Sbjct: 250 LYE 252 >gi|262166485|ref|ZP_06034222.1| general secretion pathway protein A [Vibrio mimicus VM223] gi|262026201|gb|EEY44869.1| general secretion pathway protein A [Vibrio mimicus VM223] Length = 529 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ + + + W R L G V L +L L + Sbjct: 420 LVGDQRYRIARQWLEPLWHGQYSLLWQGGFSRTLKQGMQGADVALLESKLSQV--LGEPE 477 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 FD + V+LFQ + G+ TL + + + L+ Sbjct: 478 RPRDQFDKDLSRKVELFQRWQNMQVDGIAGRQTLRRLELLTQQQAPSLK 526 >gi|218531169|ref|YP_002421985.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218523472|gb|ACK84057.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 212 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 51/204 (25%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 M + + L R + + ++V L V+ G +R V VG Sbjct: 51 AWMTLAPKAPLDP---ALARTTVDFATREPVGTLVVETAERRLYLVQPGGKAMRYPVSVG 107 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R + I+R + P W +I + Sbjct: 108 RAG-LAWTGRAEIDRKLEWPDWNPAPEMIGRH---------------------------- 138 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFE 339 P+ R + G + + + + F R+ Y +H T EP Sbjct: 139 -----------PDLPSRLEGGPFSPIGARALYFAQNRRDTLYRIHGTNEPETIGQ---AV 184 Query: 340 TSGCVRV--RNIIDLDVWLLKDTP 361 +SGC+R+ +++DL + T Sbjct: 185 SSGCIRMLNEDVMDLYERVPVGTK 208 >gi|306842573|ref|ZP_07475224.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO2] gi|306287429|gb|EFM58909.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO2] Length = 210 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 37 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYPTDEKPGTIIVDTREKFLYLIMPEGKAVRY 96 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 97 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 156 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 157 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 190 >gi|289665229|ref|ZP_06486810.1| carboxypeptidase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 446 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 3/71 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 L G S V++L+ +L G F + AV+ FQ H L G Sbjct: 221 DGKLEQGERSEQVKQLQGQLAQLGATGRDGKPLHADGDFGTNTKYAVEQFQRAHALQVDG 280 Query: 156 MVDSSTLEAMN 166 +V T A+ Sbjct: 281 VVGQQTQAALG 291 >gi|209886379|ref|YP_002290236.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] gi|209874575|gb|ACI94371.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] Length = 257 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 44/152 (28%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +++ P L V+ LR V VG+ T I P W P ++++ Sbjct: 131 VIDTPNKFLYLVQGNGQALRYGVGVGKPG-FTWAGVKTITAKREWPDWTPPAEMLKRR-- 187 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 P+ + G N + + + Sbjct: 188 -------------------------------------PDLPRHMEGGPDNPLGARAMYLG 210 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC+R+RN Sbjct: 211 SS-LYRIHGSNEPWTIGTN---VSSGCIRMRN 238 >gi|119487720|ref|ZP_01621229.1| endopeptidase, cell wall lytic activity [Lyngbya sp. PCC 8106] gi|119455553|gb|EAW36690.1| endopeptidase, cell wall lytic activity [Lyngbya sp. PCC 8106] Length = 227 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L+ G+ V+ ++ +L G + + + AVK FQ +GL G+V S Sbjct: 63 SLYYGDYGSDVKDVQHKLAYYGYFSYNAT--GYYGKVTKHAVKAFQRDYGLHVDGVVGPS 120 Query: 161 TLEAMN 166 T AM Sbjct: 121 TASAMG 126 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V +L+++L G + + + AVK FQ +GL G+ TL AM Sbjct: 172 VTKLQDQLANYGYFHANST--GYYGKITKHAVKAFQYDYGLHADGIAGPKTLRAMG 225 >gi|258513554|ref|YP_003189776.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum acetoxidans DSM 771] gi|257777259|gb|ACV61153.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum acetoxidans DSM 771] Length = 175 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 + + + Y +H T P ++GC+R++N I ++ ++ Sbjct: 52 NPGGMLGTRWLGLNIPGGVYGIHGTNNPDSIGK---AVSNGCIRMQNQDIEEIFPYIAIG 108 Query: 360 T 360 T Sbjct: 109 T 109 >gi|229091754|ref|ZP_04222954.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-42] gi|228691582|gb|EEL45335.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-42] Length = 253 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYNKSTANKGNSGGTAQENKPSQNKGTNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|159901701|ref|YP_001547947.1| peptidoglycan binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894740|gb|ABX07819.1| Peptidoglycan-binding domain 1 protein [Herpetosiphon aurantiacus ATCC 23779] Length = 322 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%) Query: 70 ISKETIAQTE-----KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 +T+A + K + I+ W +L I + G+ +V V+ L+++L G Sbjct: 64 FGDQTLATVKSFQGSKGLTK-DGIVGPNTWEKLVIET-NQGDVNVVVKALQKQLNKHG-- 119 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 S + F A +AVK FQ R GL G V +T A+ Sbjct: 120 -ASLTVDGDFGAATLTAVKSFQGRKGLTQDGSVGPNTWAALTGNA 163 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 8/79 (10%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + W ++ G+S V+V ++ L G S + F + VK FQ Sbjct: 27 AAARTWAQVND-----GDSGVNVYTVQALLKQRGY---SLDVDGDFGDQTLATVKSFQGS 78 Query: 149 HGLDPSGMVDSSTLEAMNV 167 GL G+V +T E + + Sbjct: 79 KGLTKDGIVGPNTWEKLVI 97 >gi|295705989|ref|YP_003599064.1| putative cell wall endopeptidase [Bacillus megaterium DSM 319] gi|294803648|gb|ADF40714.1| putative cell wall endopeptidase [Bacillus megaterium DSM 319] Length = 231 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G ++ V++++ L G L +S F+ + AV FQ +H L+ G+V + Sbjct: 36 VLKQGMTNDDVEQVKTVLKDKGFLKGE--VSRYFNYETKKAVMAFQEKHNLEADGVVGEN 93 Query: 161 TLEAMNV 167 T A+ Sbjct: 94 TYNALGK 100 >gi|294500636|ref|YP_003564336.1| putative cell wall endopeptidase [Bacillus megaterium QM B1551] gi|294350573|gb|ADE70902.1| putative cell wall endopeptidase [Bacillus megaterium QM B1551] Length = 224 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G ++ V++++ L G L +S F+ + AV FQ +H L+ G+V + Sbjct: 29 VLKQGMTNDDVEQVKTVLKDKGFLKGE--VSRYFNYETKKAVMAFQEKHNLEADGVVGEN 86 Query: 161 TLEAMNV 167 T A+ Sbjct: 87 TYNALGK 93 >gi|226939342|ref|YP_002794415.1| hypothetical protein LHK_00411 [Laribacter hongkongensis HLHK9] gi|226941506|ref|YP_002796580.1| hypothetical protein LHK_02590 [Laribacter hongkongensis HLHK9] gi|226714268|gb|ACO73406.1| Peptidoglycan-binding domain 1 protein precursor [Laribacter hongkongensis HLHK9] gi|226716433|gb|ACO75571.1| Peptidoglycan-binding domain 1 protein precursor [Laribacter hongkongensis HLHK9] Length = 267 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ +V L+++L G F +AV+ FQ + GL G V T Sbjct: 4 LKQGSTGSAVTVLQQQLNRLGFALEP---DGWFGEATRAAVRAFQRQAGLLDDGKVGPVT 60 Query: 162 LEAMN 166 EA+ Sbjct: 61 REALQ 65 >gi|255658560|ref|ZP_05403969.1| endopeptidase, cell wall lytic activity [Mitsuokella multacida DSM 20544] gi|260849364|gb|EEX69371.1| endopeptidase, cell wall lytic activity [Mitsuokella multacida DSM 20544] Length = 254 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L L +S V L+++L G K + F + V FQ + L +G+V Sbjct: 26 AAPVLKLNSSGRDVMLLQQKLQNVGY--TIKDIDGIFGEETQRIVTQFQKDNNLRATGVV 83 Query: 158 DSSTLEAMN 166 +++T A+ Sbjct: 84 NNATWRALK 92 >gi|196041668|ref|ZP_03108959.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus NVH0597-99] gi|196027437|gb|EDX66053.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus NVH0597-99] Length = 253 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYDKSTANKGSSGGTAQENKPSQNKGTNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|196032602|ref|ZP_03100016.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus W] gi|218903872|ref|YP_002451706.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH820] gi|228927802|ref|ZP_04090850.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946365|ref|ZP_04108687.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122301|ref|ZP_04251515.1| Spore cortex-lytic enzyme [Bacillus cereus 95/8201] gi|195995353|gb|EDX59307.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus W] gi|218539399|gb|ACK91797.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH820] gi|228661150|gb|EEL16776.1| Spore cortex-lytic enzyme [Bacillus cereus 95/8201] gi|228813291|gb|EEM59590.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831865|gb|EEM77454.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 253 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYDKSTANKGSSGGTAQENKPSQNKGTNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|118478116|ref|YP_895267.1| spore cortex-lytic enzyme [Bacillus thuringiensis str. Al Hakam] gi|196043628|ref|ZP_03110866.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus 03BB108] gi|225864724|ref|YP_002750102.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus 03BB102] gi|228934029|ref|ZP_04096872.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229184969|ref|ZP_04312159.1| Spore cortex-lytic enzyme [Bacillus cereus BGSC 6E1] gi|118417341|gb|ABK85760.1| spore cortex-lytic enzyme [Bacillus thuringiensis str. Al Hakam] gi|196025937|gb|EDX64606.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus 03BB108] gi|225788886|gb|ACO29103.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus 03BB102] gi|228598444|gb|EEK56074.1| Spore cortex-lytic enzyme [Bacillus cereus BGSC 6E1] gi|228825725|gb|EEM71515.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 253 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYDKSTANKGSSGGTAQENKPSQNKGTNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|39996637|ref|NP_952588.1| general secretion pathway protein-related protein [Geobacter sulfurreducens PCA] gi|39983518|gb|AAR34911.1| general secretion pathway protein-related protein [Geobacter sulfurreducens PCA] gi|298505651|gb|ADI84374.1| peptidoglycan-binding ATPase, putative [Geobacter sulfurreducens KN400] Length = 540 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 4/72 (5%) Query: 94 WPELPIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W PL G+ V+ L+E L +G D FDA E V+ FQ GL Sbjct: 449 WKNFHGIPLRTRAGSRGKGVKPLQELLKGAGFYDEKPTGD--FDAATEEGVRRFQQSEGL 506 Query: 152 DPSGMVDSSTLE 163 P G TL Sbjct: 507 QPDGKAGEKTLA 518 >gi|307353609|ref|YP_003894660.1| peptidoglycan-binding domain 1 protein [Methanoplanus petrolearius DSM 11571] gi|307156842|gb|ADN36222.1| Peptidoglycan-binding domain 1 protein [Methanoplanus petrolearius DSM 11571] Length = 807 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V L+ +L G + F AV FQ GL G++ Sbjct: 2 SLKIGSKGEPVCELQSKLKELGY--DPGEVDGNFGQVTRKAVSKFQENKGLSIDGVIGPE 59 Query: 161 TLEAMNV 167 ++ A+ + Sbjct: 60 SVNALGI 66 >gi|146297696|ref|YP_001181467.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411272|gb|ABP68276.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 234 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + G++ V ++ RL G + + +E+A+ LFQ ++GL + + Sbjct: 165 RTIFPGDTGDDVMAVQRRLKELGFYHGE--VDGKYGLAMEAAINLFQKKNGLPITNKITP 222 Query: 160 STLEAMN 166 L+ M Sbjct: 223 YLLKKMG 229 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 40/153 (26%), Gaps = 21/153 (13%) Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSP 291 I +F+ ++ P I + L Y+ N I GK V Sbjct: 32 ILISVFSQHFSNPYLIFVSIDDSKL-----YVFKNGILYKSYPISPGKPSTPTPVGTFRI 86 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN-- 348 + + + R +H T + GCVR+RN Sbjct: 87 ISKAYW-------GDGFGGRWMGLNVRYGKYGIHGTIYENYIGA---HVSQGCVRMRNDD 136 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 I +L ++ T + T Sbjct: 137 IKELFSYIPIGTTVILSEGAYGEFRNGFRTIFP 169 >gi|325924471|ref|ZP_08185993.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] gi|325545047|gb|EGD16379.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] Length = 1092 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 3/79 (3%) Query: 102 LHLGNSSVSVQRLRERLIIS---GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ V+ L+ RL G + + E AV+ FQ GL +G+ Sbjct: 948 LRLGDRGQEVEFLQYRLQQVDARGPNGQAVPQDGHYGPETEHAVRQFQQDQGLPATGVAG 1007 Query: 159 SSTLEAMNVPVDLRIRQLQ 177 EA++ R L+ Sbjct: 1008 PDLDEALSQAQHARREALK 1026 >gi|260583839|ref|ZP_05851587.1| carboxyl protease [Granulicatella elegans ATCC 700633] gi|260158465|gb|EEW93533.1| carboxyl protease [Granulicatella elegans ATCC 700633] Length = 485 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G S +V + L G S FD + AVK +Q + GL +G VD Sbjct: 400 ETLKVGTVSQNVLSVETILKGLGY---SVTADGYFDEATKEAVKAYQQKEGLTATGEVDE 456 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + V I+Q K+LL+ Sbjct: 457 ETAQKLMNSVRELIQQNDTQYQAAKELLK 485 >gi|149182876|ref|ZP_01861336.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. SG-1] gi|148849435|gb|EDL63625.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. SG-1] Length = 296 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G + V L+ RL G + + F AV+ FQ GL G+V T Sbjct: 45 IQKGATGDDVIELQSRLQYIGYY--NGNIDGVFGWGTYWAVRNFQYEFGLPIDGLVGQET 102 Query: 162 LEAMNV 167 + + Sbjct: 103 KDKLVK 108 >gi|110633216|ref|YP_673424.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110284200|gb|ABG62259.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 247 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 34/198 (17%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + ++ +R + + ++++ L V G +R V +GR Sbjct: 69 PAVPVSRMDPRYLRQEVVDPTGEAPGSIVIDTSQHFLYLVRGGGRAMRYGVGLGREGFA- 127 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 ++I+R P W P +I++ L + E +W Sbjct: 128 WAGRAQIDRKAMWPKWHPPAEMIERQ--PELEK---------------YKTEYDKATNEW 170 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 +PG +N + + + Y ++ Y +H +PE +SGCVR Sbjct: 171 RGG--------MEPGIMNPLGARAMYLYQDGKDTLYRIHGSPEWWSIGKS---VSSGCVR 219 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + + TP Sbjct: 220 MINQDVIDLYDRVPEGTP 237 >gi|295445961|gb|ADG21908.1| amidase [Providencia sp. WRB4] Length = 268 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 10/130 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHS---IVNDRFDNFLARVDMGIDSDIPIISKE 73 YL + + S + S D ++ + P + Sbjct: 101 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQQALDK--GQLPTFVAGLAPQHPQ- 157 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 A +++ + WP+L + L G S V LRE L +G LD +++ Sbjct: 158 -YAVMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITL 214 Query: 133 AFDAYVESAV 142 D AV Sbjct: 215 PGDDTPTDAV 224 >gi|154506082|ref|ZP_02042820.1| hypothetical protein RUMGNA_03624 [Ruminococcus gnavus ATCC 29149] gi|153793581|gb|EDN76001.1| hypothetical protein RUMGNA_03624 [Ruminococcus gnavus ATCC 29149] Length = 432 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKG--LSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++L+E+L +I+G + AV+ FQ GL + Sbjct: 348 PGYTLENGSSGAKVRQLQEQLNVIAGAYPALPKIQTDGVYGPATAEAVRKFQEIFGLPQT 407 Query: 155 GMVDSSTLEAMNV 167 G VD T ++ Sbjct: 408 GTVDYRTWYKISQ 420 >gi|78221508|ref|YP_383255.1| hypothetical protein Gmet_0285 [Geobacter metallireducens GS-15] gi|78192763|gb|ABB30530.1| hypothetical protein Gmet_0285 [Geobacter metallireducens GS-15] Length = 292 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+ V +L++ L G + F E+A++ FQ + GL +G+V Sbjct: 227 DWLQKGDRGPKVVQLQKALKSRGY---NLKSDGVFGKKTETALQDFQRKQGLPDNGIVGP 283 Query: 160 S 160 Sbjct: 284 K 284 >gi|254501216|ref|ZP_05113367.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] gi|222437287|gb|EEE43966.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] Length = 246 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 84/296 (28%), Gaps = 74/296 (25%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S E K ++ + +++ G L L + V G D Sbjct: 8 STEAPLALSKGLSR-RSLMAGGL--VLAAGTLAGCQTYEQVV---------GLPDQPPLP 55 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 FD A L T A+N QV + ++ Sbjct: 56 DEEFDYASAYA--------ALPD----GDFTWPAINYKAFDEQYLRQVVEYKTRERPGTI 103 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + Y L V G LR + VGR + I +P W PR + Sbjct: 104 IVDPY------NNYLYWVLPGGKALRYGIGVGRAGFA-WSGEALIRVKRPHPIWRPPREM 156 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 I + L + Y + PG N + + Sbjct: 157 IARK--PSLER---YWEKG------------------------------FPPGLRNPLGA 181 Query: 311 TKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++ + + Y +H T +P +SGC+R+ +++IDL + T Sbjct: 182 RAMDLWQGSVDTLYRIHGTNKPSSIGKS---VSSGCIRMWQQDVIDLFDRVPLRTK 234 >gi|156973179|ref|YP_001444086.1| Type II secretory pathway, component ExeA [Vibrio harveyi ATCC BAA-1116] gi|156524773|gb|ABU69859.1| hypothetical protein VIBHAR_00859 [Vibrio harveyi ATCC BAA-1116] Length = 541 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L ++ L + L + ++ S +D ++ V+LFQ G+ Sbjct: 453 WQAPLKDTLRLDMEGPAIDVLDQLLAQA--VNEQPLGSDIYDGALKERVELFQRWQGIGV 510 Query: 154 SGMVDSSTLEAMNVPVDLRIRQL-QVNLMR 182 G+ TLE + V + QL Q+N Sbjct: 511 DGIAGKHTLERLQQSVQIDAPQLKQINEED 540 >gi|328910876|gb|AEB62472.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens LL3] Length = 385 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP +V++++ L P+ G+ A+ +AVK FQ+ Sbjct: 304 PLPDGVFKVTNPLIRGAAVKQIQTALAALYYYPDKGAPNNGIDGAYGPKTANAVKRFQLM 363 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ T + Sbjct: 364 NGLTADGIYGPKTKAKLET 382 >gi|227820975|ref|YP_002824945.1| putative exported ErfK/YbiS/YhnG protein [Sinorhizobium fredii NGR234] gi|227339974|gb|ACP24192.1| putative exported ErfK/YbiS/YhnG protein [Sinorhizobium fredii NGR234] Length = 231 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 43/196 (21%) Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 +V + + V ++ R K V+V+ L ++ Sbjct: 32 IVGAKVKRSDVVLAAQP-KKPPQRFWRTKVRFRTDEAPGTVIVDTNNKYLYYIDGPNRAT 90 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 R + VGR ++ R P W P + Q++ Sbjct: 91 RYGIGVGREG-FGWSGVVKVGRKAEWPAWTPPAEMRQRE--------------------- 128 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILF 332 + Q+ G N + + + R+ + +H T +P Sbjct: 129 --------------KEKGRILPITQEGGIDNPLGARALYLYKGGRDTIFRIHGTNQPWTI 174 Query: 333 NNVVRFETSGCVRVRN 348 + +SGC+R+ N Sbjct: 175 GQNM---SSGCIRMMN 187 >gi|317057187|ref|YP_004105654.1| spore cortex-lytic enzyme [Ruminococcus albus 7] gi|315449456|gb|ADU23020.1| spore cortex-lytic enzyme [Ruminococcus albus 7] Length = 225 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+ V+ ++E+L G ++ + +AVK FQ + G+ +G TL+ Sbjct: 39 IGSYGNEVRAIQEKLKERGLFK--ANVTGYYGEITRNAVKAFQKQQGITQTGTAGPITLK 96 Query: 164 AMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYV 196 A+ + + + N+ + + + + G YV Sbjct: 97 ALGISIGTVPAATEANIDLLARIISAEARGEPYV 130 >gi|256788031|ref|ZP_05526462.1| peptidodoglycan-binding membrane protein [Streptomyces lividans TK24] gi|289771919|ref|ZP_06531297.1| peptidoglycan-binding membrane protein [Streptomyces lividans TK24] gi|289702118|gb|EFD69547.1| peptidoglycan-binding membrane protein [Streptomyces lividans TK24] Length = 409 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 20/109 (18%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII--- 120 S +P S T A + G L G+ V L++RL Sbjct: 309 RSAVPSQSTTTPAD--------DAPQASGDDDSPDGGTLSRGDQGPEVVELQQRLKEKWM 360 Query: 121 -SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDSSTLEAMN 166 GDLD +D VE AV+ +Q + + G+ T + Sbjct: 361 YWGDLDGD------YDRQVEDAVRQYQWENRIRTDRVGVYGPDTRRKLE 403 >gi|256824326|ref|YP_003148286.1| cell wall-associated hydrolase, invasion-associated protein [Kytococcus sedentarius DSM 20547] gi|256687719|gb|ACV05521.1| cell wall-associated hydrolase, invasion-associated protein [Kytococcus sedentarius DSM 20547] Length = 422 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L PL G+ VQRL+ L G++ P L + A AV+ FQ R GL G Sbjct: 35 RLGPYPLRPGHRGGYVQRLQWALNKVGNVTPKVALDGVYGAITTRAVRAFQTRQGLLVDG 94 Query: 156 MVDSSTLEAMNV 167 + + T ++ Sbjct: 95 IAGTGTKRRLDA 106 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +P+ LG + V+ + RL I L AVK FQ HGL G+V Sbjct: 198 SGQPIKLGWTGTRVKLVLRRLGI-----DQGQLLHRMTPAAVDAVKRFQRAHGLTADGVV 252 Query: 158 DSSTLEAMN 166 T AM Sbjct: 253 GPRTWAAMG 261 >gi|319646306|ref|ZP_08000536.1| N-acetylmuramoyl-L-alanine amidase [Bacillus sp. BT1B_CT2] gi|317392056|gb|EFV72853.1| N-acetylmuramoyl-L-alanine amidase [Bacillus sp. BT1B_CT2] Length = 294 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP +V++++E L + G+ + +AVK FQ+ Sbjct: 213 TLPTGIYKYKSPMMKGTAVRQIQEALAALYFYPDKEAKNNGIDGYYGPKTANAVKRFQLM 272 Query: 149 HGLDPSGMVDSSTLEAMNV 167 HGL G+ T + Sbjct: 273 HGLSADGIYGPKTKAKIEA 291 >gi|319764568|ref|YP_004128505.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] gi|317119129|gb|ADV01618.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] Length = 342 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 1/93 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PE + L S V+ L+ RL + L + + V+ FQ HGL + Sbjct: 44 PEPLAQELRHRMESPLVRELQVRLRHANYLALY-DVDDRYGLKTRETVRKFQKDHGLRET 102 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G+VD +T + + N Sbjct: 103 GVVDQATWDRLLPRSHKPTAAELGNTDVGPWFT 135 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 7/147 (4%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G + ++ L+ RL +G + F + A+ F+ R GL S ++D T Sbjct: 137 PGQAGY-IRELQHRLRQAGHY--QGAIDGEFHGATQQAISGFRARVGLPASHVMDERTWA 193 Query: 164 A-MNVPVDLRIRQLQVNLMRIKKLLEQKMG---LRYVLVNIPAASLEAVENGKVGLRSTV 219 + + R QL R V ++ + V +G+ Sbjct: 194 RLIAKTRNPRYAQLFDAPPASTLAQALDPRCATGRVVCISREQKRMSLVVDGRTLFTREA 253 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVI 246 R ++ RI + + I Sbjct: 254 RFARPGWESDKGEFRIWYMNSDTVSTI 280 >gi|304392960|ref|ZP_07374891.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] gi|303294958|gb|EFL89327.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] Length = 232 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 42/197 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +RQ++ R + G ++V+ L + +R V +GR Sbjct: 68 PAINLRQVKPQFFRREVDNPTGQGPGTLVVDTKNFYLYWPQANGRAMRYGVGLGRAGFD- 126 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P +I ++ + W Sbjct: 127 WSGNGVIQWKQRWPKWTPPAEMIARE----------------------------PDLEKW 158 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H +PE +SGCVR Sbjct: 159 SAANGGM-----PPGLENPLGARALYIFQDGKDTLYRVHGSPEAFSIGK---AVSSGCVR 210 Query: 346 V--RNIIDLDVWLLKDT 360 + ++IIDL + + Sbjct: 211 LLNQDIIDLYERVPSGS 227 >gi|119504858|ref|ZP_01626936.1| general secretion pathway protein A [marine gamma proteobacterium HTCC2080] gi|119459463|gb|EAW40560.1| general secretion pathway protein A [marine gamma proteobacterium HTCC2080] Length = 555 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 16/169 (9%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP---IISKETIAQTE------KAI 82 A V D +I + +++ + + + + + P ++S + I Sbjct: 393 TAQVWDSVIALNRPVMLDMQTPARFSAATLVVAFEGPLAWVLSNDGIKSIRLVDMATAWR 452 Query: 83 AFYQDILSRG-GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y+ GW RPL G+ +V + + L + D + F + Sbjct: 453 GRYRMFWQPPQGW----NRPLVEGDIDPAVAVVAQ-LFATLDQQVTPLTKQRFTPALAER 507 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 V+LFQ ++ L G+V TL +N + + L R + L+E Sbjct: 508 VRLFQAQNNLTADGVVGVQTLLKLNDALGKGLVS-GAALRRAQWLMEGP 555 >gi|90419250|ref|ZP_01227160.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90336187|gb|EAS49928.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 270 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + L L R + ++V+ PA L V +R + VGR + Sbjct: 97 PAVDVSNLDRRLWRQVVDYPTTERVGTLVVDTPAKYLYLVMEEGTAMRYGIGVGR-GGFS 155 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P +I+++ E + Sbjct: 156 WSGRATIAYKRKWPTWTPPAEMIKRE----------------------------PELAPY 187 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ P N + + + R+ Y +H T + +SGC+R Sbjct: 188 SAANGGM-----PPSLDNPLGARALYIFQDGRDTLYRLHGTNQAWSIGK---AVSSGCIR 239 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + TP Sbjct: 240 LLNQDVIDLYGRVPDGTP 257 >gi|330815101|ref|YP_004358806.1| Gp43, bacteriophage-acquired protein [Burkholderia gladioli BSR3] gi|327367494|gb|AEA58850.1| Gp43, bacteriophage-acquired protein [Burkholderia gladioli BSR3] Length = 270 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LH + V L++RL+ +G ++ +D E AVK Q GL G+ Sbjct: 3 VLHFNDCGAEVGLLQQRLVRAGY---PLAVTHIYDEATERAVKAVQAAAGLVVDGIAGPK 59 Query: 161 TLEAMNVPVDLRIRQLQVNL 180 T A+ +L Sbjct: 60 TYNALATGQRDPRDLTNADL 79 >gi|316933107|ref|YP_004108089.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315600821|gb|ADU43356.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 387 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 57/192 (29%), Gaps = 48/192 (25%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 P + QL NL R + K ++V+ L V +R V VGR D Sbjct: 180 EQPDADQSVQLPPNLRRQEVDFATKEPAGTIVVDTANTHLYYVLGNGRAVRYGVRVGR-D 238 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 T +I R P W P +I++ Sbjct: 239 GFTWNGVQKITRKAEWPDWHPPAEMIERQ------------------------------- 267 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 P G N M + + S Y +H T +P F +SGC+ Sbjct: 268 --------PYLPRFMAGGPGNPMGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCI 314 Query: 345 RV--RNIIDLDV 354 + ++ DL Sbjct: 315 GMLNEDVEDLFE 326 >gi|291545276|emb|CBL18385.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus sp. 18P13] Length = 463 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL--IISGD--LDPSKGLSVAFDAYVESAVKLFQMRHG 150 P P RPL G+SS V+ ++ RL I + F +AV+ FQ Sbjct: 175 PSYPERPLQEGDSSDDVRAIQIRLRRIAQNYPAIPVIPDTDGVFGTPTAAAVEEFQRIFS 234 Query: 151 LDPSGMVDSSTLEAMN 166 L +G+VD ST + Sbjct: 235 LPATGVVDQSTWYRIE 250 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 8/123 (6%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP---IRPLHLGN 106 + F + G+ E I + K +A + + + L G Sbjct: 227 EEFQRIFSLPATGVVDQSTWYRIEYIYNSVKKLAELSSEGEQ--FENVQKQYTEDLRPGM 284 Query: 107 SSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 S+ V+ ++ L + G ++ + ++V+ FQ GL +G+++ +T Sbjct: 285 ESMQVKLVQYYLAVVGAYYEQVQPVEITGYYGDQTAASVRSFQQVFGLPQTGIINRATWN 344 Query: 164 AMN 166 + Sbjct: 345 QLT 347 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIIS-GDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPS 154 P L G +S +V+ +E L G ++ F SAV FQ GL+ + Sbjct: 369 PGTVLKEGTTSEAVRIAQEYLNFLHGVYPQIPAVNNTGYFGPVTRSAVLAFQRLMGLEEN 428 Query: 155 GMVDSSTLEAMNV 167 G++ T + + Sbjct: 429 GLIGPITWDELAR 441 >gi|110632447|ref|YP_672655.1| peptidoglycan binding domain-containing protein [Mesorhizobium sp. BNC1] gi|110283431|gb|ABG61490.1| Peptidoglycan-binding domain 1 [Chelativorans sp. BNC1] Length = 143 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G++ V+ L+ L+ +G + + + +SAV FQ GL G+ T Sbjct: 2 LRMGSTGARVRELQALLVRAG---HALKVDGDYGPSTKSAVLAFQRFAGLIADGVAGPET 58 Query: 162 LEA---MNVPVDLR 172 + A V D R Sbjct: 59 MRALASFKVAPDER 72 >gi|307304290|ref|ZP_07584042.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307321689|ref|ZP_07601079.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306892653|gb|EFN23449.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306902758|gb|EFN33351.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 228 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 63/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ RQ+ R + ++V+ L V+ G +R V +GR Sbjct: 64 PEVPFRQIDPRFYRQEVGDPFGEAPGTIVVDTADRYLYLVQPGGRAMRYGVGLGREGFA- 122 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P +I + +L + Y DN Sbjct: 123 WSGRGLIQWKQKWPKWTPPNEMIARQ--PVLAK---YSADNGGM---------------- 161 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVR 345 PG N + S + F + + +H TPE +SGCVR Sbjct: 162 ------------PPGLDNPLGSRALYIFQNGQDTLYRVHGTPEWQSIGK---AVSSGCVR 206 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + P Sbjct: 207 MVNQDVIDLYDRVRNKAP 224 >gi|284919760|emb|CAX65537.1| putative ErfK ErfK/YbiS/YcfS/YnhG family protein [Enterobacter hormaechei] Length = 327 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 42/155 (27%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L G + +G+ R+TP + + R P W P + ++ Sbjct: 97 IVVNVAEMRLYYYPPGSNTVEVLPIGIGQAGRETPRNWVTAVERKQEGPTW-SPTANTRR 155 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + P + G N M + Sbjct: 156 AYAKEGKTLPAFF----------------------------------PAGPDNPMGLYAL 181 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 H T F +R + GC+R+RN Sbjct: 182 YIGRLYAI--HGTNSN--FGIGLR-VSQGCIRLRN 211 >gi|168185528|ref|ZP_02620163.1| spore cortex-lytic enzyme [Clostridium botulinum C str. Eklund] gi|169296468|gb|EDS78601.1| spore cortex-lytic enzyme [Clostridium botulinum C str. Eklund] Length = 241 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G+ + V ++ RL L + AVK FQ ++GL G Sbjct: 34 SIKTSVYKYGSKNNIVTEIQRRLKAWDYY--EGELDGKYGYETYLAVKDFQRKNGLIVDG 91 Query: 156 MVDSSTLEAMNVP 168 +V STL ++ + Sbjct: 92 IVGDSTLASLGIN 104 >gi|300864057|ref|ZP_07108957.1| hypothetical protein OSCI_580016 [Oscillatoria sp. PCC 6506] gi|300337936|emb|CBN54103.1| hypothetical protein OSCI_580016 [Oscillatoria sp. PCC 6506] Length = 203 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 A + ++ P+ I+ L LG+S+ V++L+ +L G ++ F+ + AV Sbjct: 116 AKLESGEAQPYSPQTGIKLLKLGSSNGCVKQLQLQLAALGYY--RGKINGRFEYSTQVAV 173 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + FQ L+ G+V S T +A+N V Sbjct: 174 QQFQQDSSLEADGIVGSVTRKALNDKVKD 202 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V L+ RL G + + F + A+ FQ + L SG++DS T + Sbjct: 64 VVELQNRLKELGYFPKNVKSTGFFGTITQEALAEFQCANNLLSSGILDSETSAKLESGEA 123 Query: 171 LR 172 Sbjct: 124 QP 125 >gi|116251224|ref|YP_767062.1| hypothetical protein RL1458 [Rhizobium leguminosarum bv. viciae 3841] gi|115255872|emb|CAK06953.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 204 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 48/201 (23%) Query: 156 MVDSSTLEAMNVPVDLRIRQLQVN-----LMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 +++S T A ++Q+ ++ L R + E V+V+ PA V Sbjct: 23 VLNSQTNYAALPDEKFPLKQVPIDKIRPELRRQEVAYETTHAAGTVIVDTPARRAYYVLG 82 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G +R V VGR ++ I R P W ++ +++ Sbjct: 83 GGRAMRYGVGVGREG-LAFAGNAYIGRKAEWPSWTPTENMQRRE---------------- 125 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTP 327 G N + + + + + +H T Sbjct: 126 --------------------ERYRKLAGGMPGGPNNPLGARAMYLFRGGNDTHFRIHGTN 165 Query: 328 EPILFNNVVRFETSGCVRVRN 348 +P +SGCVR+ N Sbjct: 166 QPQSIG---LAMSSGCVRMMN 183 >gi|90419953|ref|ZP_01227862.1| ErfK/YbiS/YcfS/YhnG family protein [Aurantimonas manganoxydans SI85-9A1] gi|90335994|gb|EAS49742.1| ErfK/YbiS/YcfS/YhnG family protein [Aurantimonas manganoxydans SI85-9A1] Length = 297 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 54/219 (24%) Query: 158 DSSTLEAMNVPVDLRIRQ----------LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 D +T + + V + + R + +E + ++V+ L Sbjct: 86 DHATNKWVTVSAERVAARTQGRALAQRGPAAEYHRRQVRIETREKPGTIIVDSQRKFLYF 145 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 VE + R V VGR + R P W P S+I+++ Sbjct: 146 VEGNGMATRYGVGVGREG-FGWSGRMSVGRKAEWPGWTPPPSMIKRE------------- 191 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MH 324 + G N + + + R++ + +H Sbjct: 192 ----------------------RAKGRILPAHMKGGPANPLGARAMYLYRGGRDSMFRIH 229 Query: 325 DTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 T +P + +SGC+R+ +++ L + T Sbjct: 230 GTNQPWTIGQNM---SSGCIRMMNQDVEHLYERVPNGTK 265 >gi|90423674|ref|YP_532044.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90105688|gb|ABD87725.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 236 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 46/176 (26%), Gaps = 46/176 (26%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L L R + ++++ L V +R + VGR D T I Sbjct: 75 LPARLKRQVVNYTTREAQGTIVIDTANTYLYLVLGNGRAMRYGIGVGR-DGFTWSGVQPI 133 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 R P W P +I + P Sbjct: 134 TRKAEWPNWTPPAEMIARQ---------------------------------------PY 154 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 G N + + + + Y +H T P +SGC+R+ N Sbjct: 155 LPRFMAGGPGNPLGARAMYL--GGSIYRIHGTNAPATIGTR---VSSGCIRLTNAD 205 >gi|114764039|ref|ZP_01443278.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Pelagibaca bermudensis HTCC2601] gi|114543397|gb|EAU46412.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. HTCC2601] Length = 186 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 298 FRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 + Q G N + + + F + +TY +H T P R ++GC+R+ ++IDL Sbjct: 117 YVQPGGPSNPLGARALYLFQNGRDTYFRIHGTTAPESIG---RSVSNGCIRMLNEHVIDL 173 Query: 353 DVWLLKDTP 361 + TP Sbjct: 174 YNRVPVGTP 182 >gi|88813439|ref|ZP_01128675.1| N-acetylmuramoyl-L-alanine amidase, putative [Nitrococcus mobilis Nb-231] gi|88789310|gb|EAR20441.1| N-acetylmuramoyl-L-alanine amidase, putative [Nitrococcus mobilis Nb-231] Length = 236 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 19/106 (17%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLGNSSVSVQRLRERLIIS 121 S P +S T + T AI P +P L L V L+ L + Sbjct: 143 SLAPTVSPLT-SDTADAI------------PTVPRPTEPLLRLMARGQPVLHLQAMLSRA 189 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 G + F +AV+ FQ L G+V T A+ Sbjct: 190 GHILEE---DGIFGQNTLAAVQAFQRSQDLKADGIVGPRTWTALRA 232 >gi|237814608|ref|ZP_04593606.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|237789445|gb|EEP63655.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] Length = 210 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 37 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRY 96 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 97 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 156 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 157 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 190 >gi|225851674|ref|YP_002731907.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] gi|256264816|ref|ZP_05467348.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 2 str. 63/9] gi|225640039|gb|ACN99952.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] gi|263095226|gb|EEZ18895.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 2 str. 63/9] gi|326408160|gb|ADZ65225.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M28] gi|326537870|gb|ADZ86085.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M5-90] Length = 206 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 33 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 93 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 186 >gi|126729498|ref|ZP_01745311.1| spore cortex-lytic enzyme precursor [Sagittula stellata E-37] gi|126709617|gb|EBA08670.1| spore cortex-lytic enzyme precursor [Sagittula stellata E-37] Length = 335 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 2/108 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V+ L+E L FD +A+ FQ +GL + Sbjct: 174 VLRFGDQGADVRVLQEDLAGLRYFA--GRRDGRFDTLTRAALLAFQADNGLATDAVAGQQ 231 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 T A+ +R + +R + K G + L AV Sbjct: 232 TWAALARAQPRPLRDIAPADLRAEGSSTMKGGDAAEVALTGGGLLAAV 279 >gi|17988092|ref|NP_540726.1| hypothetical protein BMEI1809 [Brucella melitensis bv. 1 str. 16M] gi|62289117|ref|YP_220910.1| lipoprotein [Brucella abortus bv. 1 str. 9-941] gi|82699056|ref|YP_413630.1| hypothetical protein BAB1_0138 [Brucella melitensis biovar Abortus 2308] gi|163842410|ref|YP_001626814.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis ATCC 23445] gi|189023392|ref|YP_001934160.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus S19] gi|254690443|ref|ZP_05153697.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 6 str. 870] gi|254694933|ref|ZP_05156761.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 3 str. Tulya] gi|254696563|ref|ZP_05158391.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 2 str. 86/8/59] gi|254700948|ref|ZP_05162776.1| ErfK/YbiS/YcfS/YnhG [Brucella suis bv. 5 str. 513] gi|254731476|ref|ZP_05190054.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 4 str. 292] gi|256045930|ref|ZP_05448802.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 1 str. Rev.1] gi|256060281|ref|ZP_05450454.1| ErfK/YbiS/YcfS/YnhG [Brucella neotomae 5K33] gi|256112643|ref|ZP_05453564.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 3 str. Ether] gi|256258699|ref|ZP_05464235.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus bv. 9 str. C68] gi|260546414|ref|ZP_05822154.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260563212|ref|ZP_05833698.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|260755995|ref|ZP_05868343.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260759219|ref|ZP_05871567.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260760941|ref|ZP_05873284.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260885015|ref|ZP_05896629.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|261215271|ref|ZP_05929552.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|261324253|ref|ZP_05963450.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261751467|ref|ZP_05995176.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|265992341|ref|ZP_06104898.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994084|ref|ZP_06106641.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|294851539|ref|ZP_06792212.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NVSL 07-0026] gi|297247533|ref|ZP_06931251.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 5 str. B3196] gi|306844408|ref|ZP_07476998.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO1] gi|17983844|gb|AAL52990.1| protein ybis precursor [Brucella melitensis bv. 1 str. 16M] gi|62195249|gb|AAX73549.1| lipoprotein, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82615157|emb|CAJ10094.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis biovar Abortus 2308] gi|163673133|gb|ABY37244.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis ATCC 23445] gi|189018964|gb|ACD71686.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus S19] gi|260096521|gb|EEW80397.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260153228|gb|EEW88320.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|260669537|gb|EEX56477.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260671373|gb|EEX58194.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676103|gb|EEX62924.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260874543|gb|EEX81612.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|260916878|gb|EEX83739.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|261300233|gb|EEY03730.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261741220|gb|EEY29146.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|262765065|gb|EEZ10986.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|263003407|gb|EEZ15700.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|294820128|gb|EFG37127.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NVSL 07-0026] gi|297174702|gb|EFH34049.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 5 str. B3196] gi|306275221|gb|EFM56971.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO1] Length = 206 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 33 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 93 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 186 >gi|317128455|ref|YP_004094737.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cellulosilyticus DSM 2522] gi|315473403|gb|ADU30006.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cellulosilyticus DSM 2522] Length = 171 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 44/170 (25%), Gaps = 57/170 (33%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +G Y++VN L + G+V + G+ + TP I +P Sbjct: 16 WPIGTNPTVGDPYIIVNKSTNELAFIIEGEVRQIYEIATGKTNEHTPEGEYNIIVKAVDP 75 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 Y + +I Sbjct: 76 ----------------------YYRKKDIE----------------------------GG 85 Query: 303 GKINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 K N + + I F +H T P + T GC+R++N Sbjct: 86 DKNNPLGTRWIGFDAEETDGRTYGIHGTNNPDSIGQ---YVTLGCIRLKN 132 >gi|294498679|ref|YP_003562379.1| putative peptidoglycan binding domain-containing protein [Bacillus megaterium QM B1551] gi|294348616|gb|ADE68945.1| putative peptidoglycan binding domain protein [Bacillus megaterium QM B1551] Length = 188 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V+ L++ L D+ + + F ++ VK FQ H L P G+V Sbjct: 48 TLRKGSHSSYVKDLQQSLK---DVKYNTSVDGIFGTQTQNVVKEFQTDHSLSPDGIVGPL 104 Query: 161 TLEAMNVPVDLRIR 174 T A++ R + Sbjct: 105 TWAALDENKVERKQ 118 >gi|239989830|ref|ZP_04710494.1| hypothetical protein SrosN1_21180 [Streptomyces roseosporus NRRL 11379] gi|291446846|ref|ZP_06586236.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] gi|291349793|gb|EFE76697.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] Length = 360 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 40/133 (30%), Gaps = 5/133 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++L L G + +AVK +Q H +G V Sbjct: 121 RTLKPGDKGRDVEQLERNLAELGY--TGFTPDQEYTELTAAAVKRWQKSHDAKQTGKVGP 178 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + P +RI+ + + + I L+ E+ + V Sbjct: 179 G--DVTFAPGKVRIKSVGAGVGEQA-QPGAPVLETTGSERIVTFQLDVAESQLAKAGTKV 235 Query: 220 IVGRVDRQTPILH 232 V D T Sbjct: 236 SVELPDGTTAPGK 248 >gi|146337496|ref|YP_001202544.1| hypothetical protein BRADO0342 [Bradyrhizobium sp. ORS278] gi|146190302|emb|CAL74298.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 153 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 47/168 (27%), Gaps = 47/168 (27%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++V L V +G +R V VG+ RQ ++I+ NP W P Sbjct: 18 DYSPGTIVVKTSERRLYLVLDGSHAMRYPVGVGKAGRQ-WAGTTKIDGKYKNPAWAPPAD 76 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAM 308 + + + P G N M Sbjct: 77 VKR---------------------------------------DKPELPDVIAGGSPRNPM 97 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 + +H T P + + GC+R+ ++I DL Sbjct: 98 GVAAMTLAGGE-YAIHGTNVPNSVG---GYVSYGCIRMLNQDITDLYD 141 >gi|257069740|ref|YP_003155995.1| cell wall-associated hydrolase, invasion-associated protein [Brachybacterium faecium DSM 4810] gi|256560558|gb|ACU86405.1| cell wall-associated hydrolase, invasion-associated protein [Brachybacterium faecium DSM 4810] Length = 372 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG +V L++RL G S + F + AVK Q + G+V Sbjct: 96 KLRLGARGAAVTYLQQRLNAHG---ASLKVDGVFGSATLRAVKNRQSSARIGVDGVVGPK 152 Query: 161 TLEAM 165 T A+ Sbjct: 153 TWNAL 157 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GN +V L+++L +G S + F + SAV+ Q G+ +V Sbjct: 172 KLRQGNRGSAVTTLQKQLNSAG---ASLTVDGVFGSATGSAVRALQSAAGIGVDTVVGPK 228 Query: 161 TLEAMN 166 T A+N Sbjct: 229 TWNALN 234 >gi|220931943|ref|YP_002508851.1| peptidase M23B [Halothermothrix orenii H 168] gi|219993253|gb|ACL69856.1| peptidase M23B [Halothermothrix orenii H 168] Length = 324 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L LG+ V+++++ L G + F + V+ FQ+ +GLD G Sbjct: 6 PVLATTLKLGDRGREVKKVQQILRDLGY---DIEVDSVFGYRTKQVVQAFQLNNGLDVDG 62 Query: 156 MVDSSTLE 163 +V TL Sbjct: 63 IVGDKTLN 70 >gi|148560099|ref|YP_001258172.1| putative lipoprotein [Brucella ovis ATCC 25840] gi|148371356|gb|ABQ61335.1| putative lipoprotein [Brucella ovis ATCC 25840] Length = 206 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 33 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + Sbjct: 93 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGVRALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 186 >gi|290967759|ref|ZP_06559312.1| NlpC/P60 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290782118|gb|EFD94693.1| NlpC/P60 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 323 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 H G+ + +++ L+ G + + A + A++ FQ +HG+ G++ Sbjct: 22 GAAFHPGDRGTQITEIQQALVKQGM---HLAVDGDYGADTQEAIRTFQKKHGIYADGVMG 78 Query: 159 SSTLEAM 165 + T + Sbjct: 79 AKTYAVL 85 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 V+ +++ L+ G + + F E A++ FQ R GL G++ T A+ V Sbjct: 120 EVRTIQQALVRQGY---AVDVDGVFGPGTEQALRRFQARRGLTVDGVIGPETFYALTGQV 176 >gi|229060425|ref|ZP_04197788.1| Spore cortex-lytic enzyme [Bacillus cereus AH603] gi|229167426|ref|ZP_04295164.1| Spore cortex-lytic enzyme [Bacillus cereus AH621] gi|228615988|gb|EEK73075.1| Spore cortex-lytic enzyme [Bacillus cereus AH621] gi|228718808|gb|EEL70429.1| Spore cortex-lytic enzyme [Bacillus cereus AH603] Length = 259 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQTRLKYNGFY--TGKVDGVFGWGTYWALRNFQQKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKDTTTNKGNSGGGTQENKPPKSTGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|119484925|ref|ZP_01619407.1| hypothetical protein L8106_15670 [Lyngbya sp. PCC 8106] gi|119457743|gb|EAW38867.1| hypothetical protein L8106_15670 [Lyngbya sp. PCC 8106] Length = 164 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG + +V L+ L I G + + F + E AVK FQ + L G+V S T Sbjct: 17 LQLGKTGDNVIYLQNSLNIVG---ANLRIDGVFGSDTEIAVKRFQRDNELIIDGIVGSQT 73 Query: 162 LE 163 Sbjct: 74 WR 75 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +GN+ V L+ L +++ + + F AVKLFQ++HGL +G+V + Sbjct: 94 VLKVGNTGKIVFELQTHL---NNIEANLVVDGIFGVKTLDAVKLFQLKHGLVANGIVGLN 150 Query: 161 TLEAM 165 T + + Sbjct: 151 TWKEI 155 >gi|23008960|ref|ZP_00050190.1| COG1376: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 199 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 50/192 (26%), Gaps = 48/192 (25%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + + Q + R ++V+ L V LR V VGR Sbjct: 41 LQQDPAAAVPQ-ASAIGREIVPYSGPHAPGTIVVSTAERRLYLVLPNGEALRYGVGVGRP 99 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 T I P W P ++++ Sbjct: 100 G-FTWGGTQTITMKREWPDWRPPAEMLRRR------------------------------ 128 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGC 343 P+ G N + + + + Y +H + EP +SGC Sbjct: 129 ---------PDLPRYMKGGIENPLGARAMYLGN--TIYRIHGSNEPETIGT---AVSSGC 174 Query: 344 VRVRNIIDLDVW 355 +R+ N D+ Sbjct: 175 IRMTN-EDVADL 185 >gi|291568576|dbj|BAI90848.1| putative transporter [Arthrospira platensis NIES-39] Length = 401 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L+ RL G + + A+ FQ+ GL+ +G+V+ T E + Sbjct: 71 DYDIIELQNRLQQKGYYL--GAIDGIYGEQTREAISNFQLDIGLESTGIVNQETWEYLLG 128 Query: 168 PVDLRIRQ 175 + ++ Sbjct: 129 NAAVIAQK 136 >gi|149183036|ref|ZP_01861490.1| putative muramoyl-pentapeptide carboxypeptidase [Bacillus sp. SG-1] gi|148849266|gb|EDL63462.1| putative muramoyl-pentapeptide carboxypeptidase [Bacillus sp. SG-1] Length = 210 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG-----LSVAFDAYVESAVKLFQMRHGLDP 153 R + G+S V+ L+ R ++G + + F + E+AVK FQ +GL Sbjct: 4 TRTMRNGDSGSDVKELQIR--VAGWASDTASQTYVLVDGVFGSGTEAAVKRFQKAYGLTV 61 Query: 154 SGMVDSST 161 G+ T Sbjct: 62 DGIAGPQT 69 >gi|254503879|ref|ZP_05116030.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] gi|222439950|gb|EEE46629.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] Length = 256 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 44/147 (29%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A L ++N R V VG+ + ++ R P W P ++ ++ Sbjct: 135 ARYLYLIQNDGTARRYGVGVGKPGFE-WAGSHKVTRKAEWPDWRPPAAMRKRR------- 186 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNT 321 P G N + + + Sbjct: 187 --------------------------------PELPVFMAGGPDNPLGARALYLG-STLY 213 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRN 348 +H + +P + +SGC+R+RN Sbjct: 214 RIHGSNQPWTIGH---AVSSGCIRMRN 237 >gi|332982349|ref|YP_004463790.1| ErfK/YbiS/YcfS/YnhG family protein [Mahella australiensis 50-1 BON] gi|332700027|gb|AEE96968.1| ErfK/YbiS/YcfS/YnhG family protein [Mahella australiensis 50-1 BON] Length = 266 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 19/113 (16%) Query: 259 LRQDPQYLKDNN-----IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 L + YL +N + + K K + + + + + Sbjct: 82 LEDNVLYLLKDNKVMKKYPVAEGKYKT--PSPIGAWQIVSKRTDW------GSGFGTRWL 133 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 Y +H T +P + GC R++N + +L + TP + Sbjct: 134 GLNVPWGVYGIHGTNKPDSVGWSS---SHGCFRMQNKHVEELFDLVKVGTPVY 183 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L+ G+ + +V +++RL G + L + +++A+ F+ +GL + VD+ T Sbjct: 199 LNPGDRNSAVMEVQKRLKKLGYY--NGSLDGIYGEGMKAALLKFKKDYGLPYTHTVDAVT 256 Query: 162 LEAMNV 167 + +N+ Sbjct: 257 YKTLNI 262 >gi|312143244|ref|YP_003994690.1| Peptidoglycan-binding domain 1 protein [Halanaerobium sp. 'sapolanicus'] gi|311903895|gb|ADQ14336.1| Peptidoglycan-binding domain 1 protein [Halanaerobium sp. 'sapolanicus'] Length = 337 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 2/92 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + +V++ ++ L G + + AV FQ GL G++ T Sbjct: 78 LRENDRGENVKKAQKILRQKGFY--QGEIDGHYGHQTRLAVIKFQKIAGLQADGVLGPKT 135 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 L + + + + V +L ++ Sbjct: 136 LSKLTAEGENDVAEYTVQSGDSLWVLARRFDS 167 >gi|307323213|ref|ZP_07602423.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] gi|306890702|gb|EFN21678.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] Length = 244 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L LG++ V L++RL+ ++ ++ +D + AV FQ+ +G+ G+ Sbjct: 172 GDVLTLGDTGPEVTELQKRLLRIPNVYQDGPVNGQYDQSLAQAVSRFQVWYGIRGDANGV 231 Query: 157 VDSSTLEAMN 166 S+T + + Sbjct: 232 YGSATRQQLE 241 >gi|297162440|gb|ADI12152.1| hypothetical protein SBI_09034 [Streptomyces bingchenggensis BCW-1] Length = 71 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL--DPSGMVDS 159 L LG+S V L+ RL+ D+ ++ +D + SAV FQ+ +G+ D G+ Sbjct: 2 LSLGDSGPEVSELQSRLLRIPDVYTGGSVNGQYDQSLASAVARFQLWYGIRGDEDGVYGD 61 Query: 160 STLEAMN 166 T + Sbjct: 62 DTRRDLE 68 >gi|56421815|ref|YP_149133.1| hypothetical protein GK3280 [Geobacillus kaustophilus HTA426] gi|56381657|dbj|BAD77565.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 165 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 278 GKEVFVEEVDW----NSPEPPNFIFR-QDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 G+ + + + +F+ + P + + + +H T +P Sbjct: 74 GRTIRTYPIGVGKMVTATPVGDFVIVNRQPNPGGPFGAMWLSLSKVH-YGIHGTNDPSSI 132 Query: 333 NNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + + GC+R+ N +++L + T Sbjct: 133 GK---YVSKGCIRMHNKDVLELASIVPNGTE 160 >gi|328884811|emb|CCA58050.1| hypothetical protein SVEN_4764 [Streptomyces venezuelae ATCC 10712] Length = 380 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 6/98 (6%) Query: 77 QTEKAIAFYQDILSR--GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + + + ++ GG P P+ PL G++ V+ L+ L G + Sbjct: 226 RLYALLPRLRHDVAALIGGDPAPPVWPLLRTGDTGERVRALQHLLAGRG---APLVPDGS 282 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 F E AV+ FQ P G+ T + VPV Sbjct: 283 FGPATEQAVRDFQRLVRARPDGLAGDQTWHQLGVPVRA 320 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S P + A + W +L P+ G++ +V+ ++ L G Sbjct: 282 SFGPATEQAVRDFQRLVRARPDGLAGDQTWHQL-GVPVRAGDAGEAVRAVQVLLGARG-- 338 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 F +AV FQ GL G+VD+ TL Sbjct: 339 -VPAEADGLFGPGTAAAVASFQSGAGLPADGLVDARTL 375 >gi|226311326|ref|YP_002771220.1| hypothetical protein BBR47_17390 [Brevibacillus brevis NBRC 100599] gi|226094274|dbj|BAH42716.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 368 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG S V+ L+ L G S FD AV LFQ R+ +G D+ Sbjct: 131 TLKLGASGERVKELQTMLAGLGY---KVTASGQFDESTRFAVMLFQSRNKQTLTGEADTK 187 Query: 161 TLEAMNVPVDLRIRQ 175 T A+ Q Sbjct: 188 TYTAIQTQYKNNPVQ 202 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G + V + + L D + +++Y VK FQ ++ L +G+V+ + Sbjct: 33 SLKKGMKNSRVLEVEKMLDAL-HYDYKLVVDKTYNSYTVYNVKAFQKKYKLPQTGIVNKT 91 Query: 161 TLEAMNVPVDLRIR 174 T + + R + Sbjct: 92 TYDKLTSVYQARKQ 105 >gi|225180948|ref|ZP_03734396.1| cell wall hydrolase SleB [Dethiobacter alkaliphilus AHT 1] gi|225168429|gb|EEG77232.1| cell wall hydrolase SleB [Dethiobacter alkaliphilus AHT 1] Length = 249 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + + V L+E L G + F +++ FQ HGL+P G+V Sbjct: 36 RTIRITMRGEDVAELQEFLNEQGY--RDEDAHGIFGPLTYGSLQQFQKDHGLNPDGIVGP 93 Query: 160 STLEAMN 166 T + Sbjct: 94 KTRRLIQ 100 >gi|116250642|ref|YP_766480.1| ErfK/YbiS/YhnG protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255290|emb|CAK06365.1| putative exported ErfK/YbiS/YhnG protein [Rhizobium leguminosarum bv. viciae 3841] Length = 230 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 42/188 (22%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A V V + ++ R K L V+++ L VE R + VGR Sbjct: 38 AQIVRVAQMPKYVKPQFKRKKVRLVTTEAAGTVIIDTNNKYLYLVEGNNRATRYGIGVGR 97 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 D +I R P W P + +++ Sbjct: 98 -DGFGWSGVVKIGRKAEWPSWTPPAEMRRRE----------------------------- 127 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFET 340 + + Q+ G+ N + + + R+ + +H T +P + + Sbjct: 128 ------AAKGHIIPAFQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGLNM---S 178 Query: 341 SGCVRVRN 348 SGC+R+ N Sbjct: 179 SGCIRMMN 186 >gi|326408062|gb|ADZ65127.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis M28] gi|326537779|gb|ADZ85994.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M5-90] Length = 163 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 2 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPGGEALRYGVGIGKAGFE- 60 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 61 WQGRANVEYKKQWPRWTPPPEMIQR----------------------------------- 85 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + Y +H +PE + +SGC+R Sbjct: 86 -KPELEKYRNEQEPGPTNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 141 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 142 LMNQDIIDLYNRVQGKAP 159 >gi|315644947|ref|ZP_07898075.1| spore cortex-lytic enzyme [Paenibacillus vortex V453] gi|315279658|gb|EFU42960.1| spore cortex-lytic enzyme [Paenibacillus vortex V453] Length = 197 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G+ + V L+ RL L + A ++AV FQ +G+ G+ Sbjct: 10 AAPLLKPGSENGDVWDLQYRLKTLDFYTQ--PLDGKYGANTKAAVTRFQKEYGVPADGIT 67 Query: 158 DSSTLEAMNV 167 + T + Sbjct: 68 GAQTWRQLKK 77 >gi|325107830|ref|YP_004268898.1| ErfK/YbiS/YcfS/YnhG family protein [Planctomyces brasiliensis DSM 5305] gi|324968098|gb|ADY58876.1| ErfK/YbiS/YcfS/YnhG family protein [Planctomyces brasiliensis DSM 5305] Length = 436 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 55/183 (30%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R+ +++ +RI + L+ G + +V+I +L +G V GR D TP Sbjct: 293 ARLNRVEPEQIRIGETLKVIQGPFHAVVDISDKTLTVHAHGYYVCSFPVATGR-DNATPT 351 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + + NP W P + ++ Sbjct: 352 GEFPVLNKVENPTWYGPDA-----------------------VVSAND------------ 376 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 N + I+ + H T ++GCVR+R Sbjct: 377 -------------PNNPLGEHWIDLGNGYGV--HGTINQDSIGQ---AVSNGCVRLR-PD 417 Query: 351 DLD 353 D+ Sbjct: 418 DVA 420 >gi|284054140|ref|ZP_06384350.1| extracellular solute-binding protein [Arthrospira platensis str. Paraca] Length = 401 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L+ RL G + + A+ FQ+ GL+ +G+V+ T + + Sbjct: 71 DYDIIELQNRLQQKGYYL--GAIDGIYGEQTREAISNFQLDIGLENTGIVNQETWDYLLG 128 Query: 168 PVDLRIR 174 + + Sbjct: 129 NAAVIAQ 135 >gi|239943377|ref|ZP_04695314.1| hypothetical protein SrosN15_20443 [Streptomyces roseosporus NRRL 15998] Length = 354 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 40/133 (30%), Gaps = 5/133 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++L L G + +AVK +Q H +G V Sbjct: 115 RTLKPGDKGRDVEQLERNLAELGY--TGFTPDQEYTELTAAAVKRWQKSHDAKQTGKVGP 172 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + P +RI+ + + + I L+ E+ + V Sbjct: 173 G--DVTFAPGKVRIKSVGAGVGEQA-QPGAPVLETTGSERIVTFQLDVAESQLAKAGTKV 229 Query: 220 IVGRVDRQTPILH 232 V D T Sbjct: 230 SVELPDGTTAPGK 242 >gi|289579414|ref|YP_003478041.1| carboxyl-terminal protease [Thermoanaerobacter italicus Ab9] gi|289529127|gb|ADD03479.1| carboxyl-terminal protease [Thermoanaerobacter italicus Ab9] Length = 456 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ V+ L++ L I + F +AVK Q + GL P+G+ D Sbjct: 370 GTLKVGSKGNDVKILQKHLNILKF--NAGPEDGIFGPKTANAVKKLQKKAGLTPTGVFDK 427 Query: 160 STLEAMNV 167 +T +AM Sbjct: 428 NTYDAMVK 435 >gi|168187152|ref|ZP_02621787.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum C str. Eklund] gi|169294969|gb|EDS77102.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum C str. Eklund] Length = 304 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V++L+ L G + F ++AV FQ + L G+V Sbjct: 168 SSGLLKIGSKEDKVKQLQVNLNKLGYTCGNA--DGIFGQGTKNAVISFQRNNELSADGIV 225 Query: 158 DSSTLEAMNVPVDLR 172 ST + ++ R Sbjct: 226 GESTWNKILSNLEDR 240 >gi|331268737|ref|YP_004395229.1| spore-cortex-lytic enzyme [Clostridium botulinum BKT015925] gi|329125287|gb|AEB75232.1| spore-cortex-lytic enzyme [Clostridium botulinum BKT015925] Length = 221 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G V ++ RL D L + AVK FQ ++ L G Sbjct: 17 AIKTSVYKYGTKDSIVTEIQRRLKAWDYYDGE--LDGKYGYETYLAVKEFQRKNDLTVDG 74 Query: 156 MVDSSTLEAMNVP 168 +V TL ++ + Sbjct: 75 IVGDDTLASLGIN 87 >gi|261404509|ref|YP_003240750.1| spore cortex-lytic enzyme [Paenibacillus sp. Y412MC10] gi|261280972|gb|ACX62943.1| spore cortex-lytic enzyme [Paenibacillus sp. Y412MC10] Length = 219 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G+ + V L+ RL L + A ++AV FQ +G+ G+ Sbjct: 32 AAPLLKPGSENGDVWDLQYRLKTLDFYTQ--PLDGKYGANTKAAVSRFQKEYGVPADGIT 89 Query: 158 DSSTLEAMNV 167 + T + Sbjct: 90 GAQTWRQLKK 99 >gi|160932600|ref|ZP_02079990.1| hypothetical protein CLOLEP_01439 [Clostridium leptum DSM 753] gi|156868559|gb|EDO61931.1| hypothetical protein CLOLEP_01439 [Clostridium leptum DSM 753] Length = 241 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V++++ +L G + + + + ++AV FQ + GLDP G+ + TL Sbjct: 52 KYGSQGEEVRQIQTKLKELGLY--TGSIDGIYGSGTKNAVIQFQKQQGLDPDGIAGTKTL 109 Query: 163 EAMN 166 A+ Sbjct: 110 TALG 113 >gi|228901287|ref|ZP_04065483.1| Spore cortex-lytic enzyme [Bacillus thuringiensis IBL 4222] gi|228858352|gb|EEN02816.1| Spore cortex-lytic enzyme [Bacillus thuringiensis IBL 4222] Length = 253 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYDKSTANKGNSGSTAQKNKPSQNKGTNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|255307414|ref|ZP_05351585.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile ATCC 43255] Length = 103 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + GNS V+ + L + G + G+ +F + +AV FQ ++GL G++ Sbjct: 30 TTKVIRKGNSGKEVKAAQIMLTLLGY---NVGIDSSFGSKTYNAVVSFQKKYGLSADGII 86 Query: 158 DSSTLEAMNV 167 +T + + Sbjct: 87 GPATWDKLGR 96 >gi|218897774|ref|YP_002446185.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus G9842] gi|228908491|ref|ZP_04072332.1| Spore cortex-lytic enzyme [Bacillus thuringiensis IBL 200] gi|218545433|gb|ACK97827.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus G9842] gi|228851138|gb|EEM95951.1| Spore cortex-lytic enzyme [Bacillus thuringiensis IBL 200] Length = 253 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + + T + + + + N ++ + N+P + L Sbjct: 90 LAGAKTKQMLVK--ATKYDKSTANKGNSGSTAQKNKPSQNKGTNVPNG----YSQNDIQL 143 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G + + + ++ N Sbjct: 144 MANAVYGESRGEPYLGQVAVAAVILNRV 171 >gi|126700003|ref|YP_001088900.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile 630] gi|115251440|emb|CAJ69273.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile] Length = 200 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + GNS V+ + L + G + G+ +F + +AV FQ ++GL G++ Sbjct: 127 TTKVIRKGNSGKEVKAAQIMLTLLGY---NVGIDSSFGSKTYNAVVSFQKKYGLSADGII 183 Query: 158 DSSTLEAMNV 167 +T + + Sbjct: 184 GPATWDKLGR 193 >gi|13470669|ref|NP_102238.1| hypothetical protein mll0441 [Mesorhizobium loti MAFF303099] gi|14021411|dbj|BAB48024.1| mll0441 [Mesorhizobium loti MAFF303099] Length = 308 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 2/61 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G SV L L G L F E+AV FQ HGL G Sbjct: 181 DSVLTRGERGPSVAALVSNLAALGYYK--GKLDDVFGYGTEAAVLAFQRDHGLTADGYAG 238 Query: 159 S 159 Sbjct: 239 E 239 >gi|328553931|gb|AEB24423.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens TA208] Length = 385 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMR 148 LP +V++++ L G+ A+ A AV+ FQ+ Sbjct: 304 SLPAGTFKVTSPLTRGEAVKQIQTALAALRYYPDKNAKNFGIDGAYGAKTAGAVRRFQLM 363 Query: 149 HGLDPSGMVDSST 161 +GL G+ T Sbjct: 364 NGLKADGIYGPKT 376 >gi|116075275|ref|ZP_01472535.1| hypothetical protein RS9916_26984 [Synechococcus sp. RS9916] gi|116067472|gb|EAU73226.1| hypothetical protein RS9916_26984 [Synechococcus sp. RS9916] Length = 175 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 51/167 (30%) Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 ++ + + + +G+ V +G TP ++ + NP + +S Sbjct: 51 DLASRRISVIRDGQQLGLWPVAIGDPKTPTPAGVFKVENMRINPQYQSTKS--------- 101 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--Y 316 +V G + I F Sbjct: 102 --------------------GKVHPVT-----------------GPGGPLGHRWIGFLQQ 124 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI--IDLDVWLLKDTP 361 N +H TP P ++GCVR+ N L + TP Sbjct: 125 GENQFGIHGTPWPHWVKIRA-AVSNGCVRMLNAHVQQLYDLVDVGTP 170 >gi|312115720|ref|YP_004013316.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220849|gb|ADP72217.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 192 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 47/149 (31%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L VE+ V + + + + + S +++ NP W P + ++++ Sbjct: 63 DRRLYYVESKTVAYSYPIAIPKAEAK-WSGVSYVSQKRENPAWT-PTADMRRE------- 113 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNN 320 P G N + + + ++ Sbjct: 114 -------------------------------NPKLPAYVPGGDPRNPLGTRALYL--GDS 140 Query: 321 TY-MHDTPEPILFNNVVRFETSGCVRVRN 348 Y +H T P L + GC+R+ N Sbjct: 141 LYRIHGTDAPWLIGQ---QVSHGCIRMYN 166 >gi|265999695|ref|ZP_06111788.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 2 str. 63/9] gi|263095381|gb|EEZ18982.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 2 str. 63/9] Length = 165 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V++ L V G LR V +G+ + Sbjct: 4 PAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPGGEALRYGVGIGKAGFE- 62 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ Sbjct: 63 WQGRANVEYKKQWPRWTPPPEMIQR----------------------------------- 87 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 PE + Q+PG N + + + Y +H +PE + +SGC+R Sbjct: 88 -KPELEKYRNEQEPGPTNPLGARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIR 143 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 144 LMNQDIIDLYNRVQGKAP 161 >gi|240142398|ref|YP_002966908.1| hypothetical protein MexAM1_META2p0723 [Methylobacterium extorquens AM1] gi|240012342|gb|ACS43567.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 167 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%) Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P G N + + + ++ +H T P R +SGC+R+RN Sbjct: 94 PKLPALVPGGPGNPLGARALYLFADGGDTSYRIHGTNAPRSIG---REASSGCIRMRNAD 150 >gi|119512681|ref|ZP_01631754.1| hypothetical protein N9414_14468 [Nodularia spumigena CCY9414] gi|119462648|gb|EAW43612.1| hypothetical protein N9414_14468 [Nodularia spumigena CCY9414] Length = 188 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P LP L G+S SV+ L+ L+ +G + AF E+AVK FQ + L Sbjct: 121 PALP--TLRFGSSGTSVRVLQRLLVSNGYAIR---VDGAFGPLTETAVKAFQNQRSLGVD 175 Query: 155 GMVDSSTLEAMNV 167 G+V T + + + Sbjct: 176 GIVGPVTWQQLTI 188 >gi|326497859|dbj|BAJ94792.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518943|dbj|BAJ92632.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326528353|dbj|BAJ93358.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 369 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ + RL++ L G L S S AFDA +E+AV +Q GL+ +G++D T Sbjct: 57 GDERDGLARLKDYLSHFGYLSEAPTSSPFSDAFDAELEAAVATYQRNFGLNATGVLDPPT 116 Query: 162 LEAMNVP 168 + M P Sbjct: 117 VSQMVAP 123 >gi|329930802|ref|ZP_08284207.1| spore cortex-lytic enzyme [Paenibacillus sp. HGF5] gi|328934661|gb|EGG31164.1| spore cortex-lytic enzyme [Paenibacillus sp. HGF5] Length = 219 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G+ + V L+ RL L + A ++AV FQ +G+ G+ Sbjct: 32 AAPLLKPGSENGDVWDLQYRLKTLDFYTQ--PLDGKYGANTKAAVSRFQKEYGVPADGIT 89 Query: 158 DSSTLEAMNV 167 + T + Sbjct: 90 GAQTWRQLKK 99 >gi|229543982|ref|ZP_04433041.1| spore cortex-lytic enzyme [Bacillus coagulans 36D1] gi|229325121|gb|EEN90797.1| spore cortex-lytic enzyme [Bacillus coagulans 36D1] Length = 264 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 9/159 (5%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G + + G V L+ RL G + F A++ FQ +G Sbjct: 25 SGTARAFSNQVIQKGAVGDDVIELQARLQYIGYYK--GTIDGVFGYSTYWALRNFQKAYG 82 Query: 151 LDPSGMVDSST---LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 + G+ L + ++ + + + K P + Sbjct: 83 MPVDGLAGPGVKAKLVKASKYDAAYVKSMVASGKKFTYYGGTKKQAPKTAAKKPVQTATN 142 Query: 208 VENG----KVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 V NG + L S + G + + ++ N Sbjct: 143 VPNGFSQNDIRLLSQAVYGEARGEPYEGQVAVAAVILNR 181 >gi|17988176|ref|NP_540810.1| hypothetical protein BMEI1893 [Brucella melitensis bv. 1 str. 16M] gi|17983936|gb|AAL53074.1| protein ybis precursor [Brucella melitensis bv. 1 str. 16M] Length = 203 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 8/178 (4%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + Y V +L A+ KV + + ++ Y+V+P Sbjct: 25 TTPDVMYASVTEGPYALPAIPYEKVPKQFRRQIVPDPTGQAPGTIVVSLKDHFLYYVLPG 84 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + + + ++ N+ + + E+ PE + Q+PG N + Sbjct: 85 GEALRYGVGIGKAGFEWQGRANVEYKKQWPRWTPPPEMIQRKPELEKYRNGQEPGPTNPL 144 Query: 309 ASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + Y +H +PE + +SGC+R+ ++IIDL + P Sbjct: 145 GARALYIYQNGRDTGYRIHGSPEWWSIGQSM---SSGCIRLMNQDIIDLYNRVQGKAP 199 >gi|119491208|ref|ZP_01623305.1| hypothetical protein L8106_25370 [Lyngbya sp. PCC 8106] gi|119453549|gb|EAW34710.1| hypothetical protein L8106_25370 [Lyngbya sp. PCC 8106] Length = 176 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 18/138 (13%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G S+ V+ L+++L G GL F+ +E+ VK FQ GL G+V Sbjct: 2 VLKSGQSTHQVKNLQQQLERLGYSVGRLGLP--FNTQLENIVKAFQAEQGLPVDGVVGEI 59 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T L+++Q L + + + + N L VI Sbjct: 60 T--------QLKLQQAIAELELLANSQKSPIPQPPQINNSGDFL------QGNWLEWRVI 105 Query: 221 VGRVD--RQTPILHSRIN 236 + R P +I+ Sbjct: 106 TTKKLNARSGPGFEYKID 123 >gi|256752603|ref|ZP_05493457.1| SpoIID/LytB domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748541|gb|EEU61591.1| SpoIID/LytB domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 487 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R + G++ V+ L+ L G ++ +D +AV FQ + L G+ Sbjct: 32 SRNMKKGDTGDDVKLLQTLLKEIGYYTKD--ITGTYDDNTLNAVMDFQKYYSLAVDGIAG 89 Query: 159 SSTLEAM 165 +T+ + Sbjct: 90 INTITKV 96 >gi|187779103|ref|ZP_02995576.1| hypothetical protein CLOSPO_02698 [Clostridium sporogenes ATCC 15579] gi|187772728|gb|EDU36530.1| hypothetical protein CLOSPO_02698 [Clostridium sporogenes ATCC 15579] Length = 308 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F E+AVK Q L G+V T Sbjct: 241 KKGAKGGITKAIQKMLINIGYPVGSSGADGVFGDGTETAVKAVQKDCNLSVDGIVGKETW 300 Query: 163 EAM 165 +A+ Sbjct: 301 KAL 303 >gi|170751970|ref|YP_001758230.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170658492|gb|ACB27547.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 215 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 72/241 (29%), Gaps = 53/241 (21%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAY-VESAVKLF--QMRHGLDPSGMVDSSTLEAMNV 167 V L L +S + ++D + ++A + + Q ++G + + + Sbjct: 5 VTALAALLGVSVLAATPVLAASSYDPFGTDNADEYYSDQGQYGYQGTYAPGYG--QGVQA 62 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 +++ + R ++V+ L V +R V VGR Sbjct: 63 APQAQVQPIP----REIVAFNGPYAPGTIVVSTAERRLYYVLGNGEAIRYGVGVGRPG-F 117 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 + ++I P W P+++I + Sbjct: 118 SWSGTNKITAKREWPSWTPPKAMIARR--------------------------------- 144 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 P+ G N + + + S +H + EP +SGC+R+ Sbjct: 145 ------PDLPRYMAGGIENPLGARAMYIGSTE-YRIHGSNEPDTIGQ---AVSSGCIRMT 194 Query: 348 N 348 N Sbjct: 195 N 195 >gi|269960198|ref|ZP_06174573.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835005|gb|EEZ89089.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 541 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L ++ L + L + ++ S +D ++ V+LFQ G+ Sbjct: 453 WQAPLKDTLRLDMEGPAIDVLDQLLAQA--VNEQPLGSDIYDGALKERVELFQRWQGIGV 510 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 G+ TL+ + V + QL+ Sbjct: 511 DGIAGQRTLDRLQQSVQMDAPQLKQIDEE 539 >gi|330861295|emb|CBX71539.1| hypothetical protein YEW_CU11380 [Yersinia enterocolitica W22703] Length = 315 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 6/117 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETI 75 YL G+ S + + +I+N + S P + Sbjct: 141 YLHFISGVGANGSVWLYSNVPYKMAMPPATILNRWQQAVHEGTTAPYLASLAPQHPQ--Y 198 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + +A+ + R WP++ P L G S + LRE L +G L P Sbjct: 199 EKMHQALKEM--LADRRPWPQMANGPSLRPGQLSDDIPALREILDRTGMLHPVVSAP 253 >gi|239830989|ref|ZP_04679318.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] gi|239823256|gb|EEQ94824.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] Length = 206 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 8/165 (4%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V + A+ + K+ + + + ++ Y ++P + Sbjct: 33 YSSVTDAGYVVPAIPSEKIQPQYRRQIVKYPTDEKPGTIIVDTREKFLYLIMPEGKAMRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 93 GIGVGREGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 Y++ +H TPE + +SGC+R+ ++I+DL Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMNQDIMDLYD 194 >gi|114763469|ref|ZP_01442876.1| ErfK/YbiS/YcfS/YnhG family protein [Pelagibaca bermudensis HTCC2601] gi|114544007|gb|EAU47018.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius sp. HTCC2601] Length = 186 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 53/203 (26%) Query: 160 STLEAMNVPVDLRIRQLQVN------LMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGK 212 +TL VP R + + N + + + +G+ ++ + + +L +G Sbjct: 17 ATLALPLVPAQARAQAVIRNNISSFVMQDWRDHF-ETLGVSSIVADTTSRALHYWNADGS 75 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V + D T ++ I R P W S + + Sbjct: 76 DYRVYPTSVPKTDELTKRGYTEIVRKKVGPSWTPTASQL--ERFP--------------- 118 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 DW PG N + + + +H T + Sbjct: 119 --------------DWEPIG---------PGPDNPLGTHAMYLSWPAYI-IHGTHDTRKI 154 Query: 333 NNVVRFETSGCVRVRNIIDLDVW 355 R + GC+ + N + Sbjct: 155 G---RRSSDGCIGLYN-EKIAEL 173 >gi|326202068|ref|ZP_08191938.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium papyrosolvens DSM 2782] gi|325987863|gb|EGD48689.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium papyrosolvens DSM 2782] Length = 236 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V ++ERL G S ++ +++AV FQ H L + + Sbjct: 167 RNLKPGDRGADVLAVQERLKQLGYFHGY--ESGIYEDDLKNAVFQFQKDHNLKVKVSIST 224 Query: 160 STLEAMNVP 168 AM Sbjct: 225 PDYNAMGYS 233 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 6/56 (10%) Query: 308 MASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + R +H T R + GC+R+ N I +L + T Sbjct: 98 FGGRWLGLNVRWGNYGIHGTKNEASIG---RSASHGCIRMYNRDIKELYDLVPLGT 150 >gi|205373543|ref|ZP_03226346.1| hypothetical protein Bcoam_09775 [Bacillus coahuilensis m4-4] Length = 164 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 50/155 (32%), Gaps = 13/155 (8%) Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRI---MFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ++ V + + P ++ + I + P S + ++ KD Sbjct: 14 QISRDYRVPISSILSSNPQINPDMIIIGQRILIPSIPYSPSNPFRILINRQDHTLTLYKD 73 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N + K + V ++ +P I + P + + + +H T Sbjct: 74 NTV----YKTYPIAVGKIASETPIGNYIIINKAPNPGGPFGAMWMSISKEH-YGIHGTNN 128 Query: 329 PILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 P + GC+R+ N +++L + T Sbjct: 129 PSSIGKN---VSLGCIRMYNKDVVELATIISIGTE 160 >gi|220927029|ref|YP_002502331.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219951636|gb|ACL62028.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 209 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 49/188 (26%), Gaps = 46/188 (24%) Query: 163 EAMNVPVDLRIRQLQV--NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 A + + ++R G ++V+ L V G LR + Sbjct: 46 SASAATPEAMDATVPKLSPILRETVAYNGPYGPGTIVVSTSERRLYYVLGGGQALRYGIG 105 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VGR T I P W P ++++ Sbjct: 106 VGRPG-FTWGGMQSITMKREWPDWRPPSQMLRRR-------------------------- 138 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P+ G N + + + +H + EP + Sbjct: 139 -------------PDLPRYMKGGPENPLGARAMYLG-GTLYRIHGSNEPETIGT---AVS 181 Query: 341 SGCVRVRN 348 SGC+R+ N Sbjct: 182 SGCIRMTN 189 >gi|331082131|ref|ZP_08331259.1| hypothetical protein HMPREF0992_00183 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405726|gb|EGG85256.1| hypothetical protein HMPREF0992_00183 [Lachnospiraceae bacterium 6_1_63FAA] Length = 163 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPS 154 P +PL +G+S +++++E+L I+ +S F ++AVK FQ GL + Sbjct: 79 PGQPLDIGSSGSKIRQIQEQLNAIANAYPALPKISVDGVFGENTQNAVKKFQQIFGLPAT 138 Query: 155 GMVDSSTLEAMN 166 G++D ST + Sbjct: 139 GIIDYSTWYEIQ 150 >gi|295314770|gb|ADF97535.1| PlyM10 [uncultured phage] Length = 282 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L + FD E+AVK FQ +GL G+ + + Sbjct: 220 GDTGAAVKTLQSELKQAGFL---LSVDGIFDKGTETAVKAFQRANGLAVDGVFGTGSQAK 276 Query: 165 MNV 167 +N Sbjct: 277 LNA 279 >gi|284990257|ref|YP_003408811.1| peptidoglycan-binding domain 1 protein [Geodermatophilus obscurus DSM 43160] gi|284063502|gb|ADB74440.1| Peptidoglycan-binding domain 1 protein [Geodermatophilus obscurus DSM 43160] Length = 224 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG++ +V+RL+E L P + F ++ V+ FQ R GL G+V + Sbjct: 158 VLRLGSTGDAVRRLQETLNRWYPSLPPLAVDGDFGPRTDARVRYFQGRAGLVADGIVGPA 217 Query: 161 TLEAMN 166 T A+ Sbjct: 218 TWRALG 223 >gi|288921194|ref|ZP_06415480.1| cell wall hydrolase/autolysin [Frankia sp. EUN1f] gi|288347401|gb|EFC81692.1| cell wall hydrolase/autolysin [Frankia sp. EUN1f] Length = 428 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 18/104 (17%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVSVQRLRERLIISGD 123 +A + + G + + LG+ V L+ERL G Sbjct: 100 RAFQQSRGLSVDGIIGPDTFRAIEEARRRLGDRLLYFSVTHPFVGDDVTALQERLSNMGF 159 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 F A + AV+ FQ GLDP G+ TL + Sbjct: 160 --DVGRADGIFGARTDVAVRDFQRNRGLDPDGLCGPRTLRELKR 201 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + FD +++AV+ FQ GL G++ T A+ Sbjct: 87 TADLFDRELDNAVRAFQQSRGLSVDGIIGPDTFRAIE 123 >gi|229018065|ref|ZP_04174940.1| Spore cortex-lytic enzyme [Bacillus cereus AH1273] gi|229024246|ref|ZP_04180705.1| Spore cortex-lytic enzyme [Bacillus cereus AH1272] gi|228737021|gb|EEL87557.1| Spore cortex-lytic enzyme [Bacillus cereus AH1272] gi|228743156|gb|EEL93281.1| Spore cortex-lytic enzyme [Bacillus cereus AH1273] Length = 259 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQKGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQQKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQSKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|261420721|ref|YP_003254403.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y412MC61] gi|319768391|ref|YP_004133892.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y412MC52] gi|261377178|gb|ACX79921.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y412MC61] gi|317113257|gb|ADU95749.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y412MC52] Length = 165 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 278 GKEVFVEEVDW----NSPEPPNFIFR-QDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 G+ + + + +F+ + P + + + +H T +P Sbjct: 74 GRTIRTYPIGVGKMVTATPVGDFVIVNRQPNPGGPFGAMWLSLSKLH-YGIHGTNDPSSI 132 Query: 333 NNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + + GC+R+ N +++L + T Sbjct: 133 GK---YVSKGCIRMHNKDVLELASIVPNGTE 160 >gi|148238943|ref|YP_001224330.1| hypothetical protein SynWH7803_0607 [Synechococcus sp. WH 7803] gi|147847482|emb|CAK23033.1| Conserved hypothetical protein [Synechococcus sp. WH 7803] Length = 169 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 41/164 (25%), Gaps = 51/164 (31%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + + NG+ V +G TP ++ NP + +S Sbjct: 48 QRRISVIRNGERIGPWPVAIGDPKTPTPTGVFQVENKRVNPQYQSTKS------------ 95 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRN 319 V G + + I F N Sbjct: 96 -----------------GRVHPVT-----------------GPSSPLGHRWIGFLQQGPN 121 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNI--IDLDVWLLKDTP 361 +H TP P ++GCVR+ N L + TP Sbjct: 122 QFGIHGTPWPHWVKIRA-AVSNGCVRMLNAHVQKLYELVDVGTP 164 >gi|295704030|ref|YP_003597105.1| putative peptidoglycan binding domain-containing protein [Bacillus megaterium DSM 319] gi|294801689|gb|ADF38755.1| putative peptidoglycan binding domain protein [Bacillus megaterium DSM 319] Length = 188 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V+ L++ L D+ + + F ++ VK FQ H L P G+V Sbjct: 48 TLRKGSHSSYVRDLQQSLK---DVKYNTSVDGIFGTQTQNVVKEFQTDHSLSPDGIVGPL 104 Query: 161 TLEAMNVPVDLRIR 174 T A++ R + Sbjct: 105 TWAALDENKVERKQ 118 >gi|229587283|ref|YP_002860321.1| LycA [Clostridium botulinum Ba4 str. 657] gi|229260176|gb|ACQ51213.1| LycA [Clostridium botulinum Ba4 str. 657] Length = 318 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 251 KQGARGGITKVIQQMLINIGYPVGSYGADGVFGDGTVTAIKAFQRDCHLVADGIVGKETW 310 Query: 163 EAM 165 +A+ Sbjct: 311 KAL 313 >gi|160933190|ref|ZP_02080579.1| hypothetical protein CLOLEP_02035 [Clostridium leptum DSM 753] gi|156868264|gb|EDO61636.1| hypothetical protein CLOLEP_02035 [Clostridium leptum DSM 753] Length = 439 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + LG++ +V +L++RL+ G + FD E V FQ + Sbjct: 357 PFPKGTTMKLGDTGDNVTKLQQRLLELGH--TYSEPTGTFDELTEQGVMNFQFLSDMVAD 414 Query: 155 GMVDSSTLEAMNVPVDLR 172 G+ D + L+A+ P ++ Sbjct: 415 GIADDALLDALYAPDAVK 432 >gi|39936673|ref|NP_948949.1| ErfK/YbiS/YcfS/YnhG protein [Rhodopseudomonas palustris CGA009] gi|39650529|emb|CAE29052.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] Length = 294 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 58/192 (30%), Gaps = 48/192 (25%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 P + QL NL R + K ++V+ L V +R V VGR D Sbjct: 88 EQPDADQTVQLPPNLRRQEVDFATKEPAGTIVVDTANTHLYYVLGNGRAIRYGVRVGR-D 146 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 T +I+R P W P +I++ Sbjct: 147 GFTWNGVQKISRKAEWPDWHPPAEMIERQ------------------------------- 175 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 P G N M + + S Y +H T +P F +SGC+ Sbjct: 176 --------PYLPRFMAGGPGNPMGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCI 222 Query: 345 RV--RNIIDLDV 354 + ++ DL Sbjct: 223 GMLNDDVSDLFE 234 >gi|256005192|ref|ZP_05430160.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 2360] gi|255990846|gb|EEU00960.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 2360] gi|316941590|gb|ADU75624.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 1313] Length = 234 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ +L I + + + AV+ FQ ++GL G+ TL A Sbjct: 43 GSTGQEVKNIQYKLAIWKYY--NGKIDGIYGYKTYMAVRKFQAKNGLKVDGIAGPETLAA 100 Query: 165 MNVPVDLRIR 174 + +P + Sbjct: 101 LGLPTGQAAK 110 >gi|125974454|ref|YP_001038364.1| cell wall hydrolase, SleB [Clostridium thermocellum ATCC 27405] gi|281418980|ref|ZP_06249998.1| spore cortex-lytic enzyme [Clostridium thermocellum JW20] gi|125714679|gb|ABN53171.1| cell wall hydrolase, SleB [Clostridium thermocellum ATCC 27405] gi|281407437|gb|EFB37697.1| spore cortex-lytic enzyme [Clostridium thermocellum JW20] Length = 234 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ +L I + + + AV+ FQ ++GL G+ TL A Sbjct: 43 GSTGQEVKNIQYKLAIWKYY--NGKIDGIYGYKTYMAVRKFQAKNGLKVDGIAGPETLAA 100 Query: 165 MNVPVDLRIR 174 + +P + Sbjct: 101 LGLPTGQAAK 110 >gi|115522891|ref|YP_779802.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisA53] gi|115516838|gb|ABJ04822.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 266 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 44/190 (23%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + +D + + + + ++++ P L V+ LR Sbjct: 102 QQAIREPEDQLDPAQQPIDPRFEKQLVAYQGNESPGTIVIDTPNKFLFLVQGDGKALRYG 161 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V VGR T I+ P W P ++ + Sbjct: 162 VGVGRPG-FTWSGVKHISAKKEWPAWTPPPEMLARR------------------------ 196 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 P+ + G N + + + S +H + EP Sbjct: 197 ---------------PDLPRHMEGGPQNPLGARAMYLGSS-LYRIHGSNEPWTIGTN--- 237 Query: 339 ETSGCVRVRN 348 +SGC+R+RN Sbjct: 238 VSSGCIRMRN 247 >gi|332710365|ref|ZP_08430313.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] gi|332350914|gb|EGJ30506.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] Length = 152 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + L GN+ +V+ L++ LI G + FD Y V FQ + L G Sbjct: 75 TVTMPVLTPGNNGDAVRFLQQILISLGY--TIVKFNANFDRYTYLGVTQFQRNNRLKVDG 132 Query: 156 MVDSSTLEAMNVPVDLRIR 174 +V T + R R Sbjct: 133 VVGWHTWRKLGEASVSRRR 151 >gi|307152104|ref|YP_003887488.1| hypothetical protein Cyan7822_2234 [Cyanothece sp. PCC 7822] gi|306982332|gb|ADN14213.1| protein of unknown function DUF187 [Cyanothece sp. PCC 7822] Length = 423 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G VQ ++ L G L+ F ++AV FQ +GL G+V T Sbjct: 359 GMRGDDVQEIQRLLQNRGFY--RGKLNGNFGFRTKAAVTAFQKANGLKNDGIVGPLTYRQ 416 Query: 165 MNVP 168 + Sbjct: 417 LKFS 420 >gi|269127230|ref|YP_003300600.1| ErfK/YbiS/YcfS/YnhG family protein [Thermomonospora curvata DSM 43183] gi|268312188|gb|ACY98562.1| ErfK/YbiS/YcfS/YnhG family protein [Thermomonospora curvata DSM 43183] Length = 243 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 6/99 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ RL G + + + AV FQ + + S V A Sbjct: 58 GARGEHVKALQRRLKELGYAP--GPIDGRYGNLTQMAVWAFQKVNRIKVSDTVGERMWAA 115 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 + P R + R+ + +Y++V Sbjct: 116 LENPKAPRPVSKRREPERVDV----DLRRQYLVVYKAGR 150 >gi|227821416|ref|YP_002825386.1| hypothetical protein NGR_c08420 [Sinorhizobium fredii NGR234] gi|227340415|gb|ACP24633.1| hypothetical protein NGR_c08420 [Sinorhizobium fredii NGR234] Length = 306 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 45/208 (21%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 EA +P I + +R + ++++ P+ L V++G + LR Sbjct: 101 GPHPDEAFPLPATD-ISTVDPRFLRQQVPYVTHEPPGTIVIDTPSRHLYLVQDGGMALRY 159 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + VG+ + +RI R P W+ ++ ++ Sbjct: 160 GIGVGKAGLE-FAGEARIGRKALWPRWIPTSEMVAREP---------------------- 196 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNN 334 DPG N + + Y ++ + +H T E Sbjct: 197 -------------ERYGPLASGLDPGLTNPLGPRALYLYQDGKDTLFRIHGTTEAWSIGK 243 Query: 335 VVRFETSGCVRVRNII--DLDVWLLKDT 360 +SGC+R+ N DL + + T Sbjct: 244 ---AVSSGCIRMFNPDVIDLYNRVPEGT 268 >gi|170749159|ref|YP_001755419.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170655681|gb|ACB24736.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 192 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 50/174 (28%), Gaps = 47/174 (27%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + + ++V L V +R V VG +RI+R Sbjct: 46 FARYEIAAPTREAPGTIVVETKERQLYLVLPNGRAMRYGVSVGDEA-YGWTGTARIDRKA 104 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P +I++ W Sbjct: 105 EWPAWNPPAEMIKR----------------------------------WPHVHA------ 124 Query: 300 QDPGKINAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 G +N + + + R + Y +H T EP +SGC+R+RNI Sbjct: 125 MQGGPMNPLGARALYLSDRGRDTLYRIHGTNEPEKIGQ---AVSSGCIRMRNID 175 >gi|323139261|ref|ZP_08074315.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322395482|gb|EFX98029.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 206 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 47/182 (25%), Gaps = 46/182 (25%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 L R ++V+ L V+ +R + VGR Q Sbjct: 46 TPTPEEENLSGPYERQVVFFRTTEAPGTIVVHTAERYLYLVQGNNRAIRYGIGVGRDGFQ 105 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 +I+R P W P +IQ+ Sbjct: 106 -WAGMHKISRKQEWPDWRPPPEMIQRQ--------------------------------- 131 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 P G N M + + Y +H T +P + +SGC R+ Sbjct: 132 ------PYLPRFMAGGPGNPMGARALYI--GTTIYRIHGTNQPQTIGH---AVSSGCFRL 180 Query: 347 RN 348 N Sbjct: 181 VN 182 >gi|239827527|ref|YP_002950151.1| spore cortex-lytic enzyme [Geobacillus sp. WCH70] gi|239807820|gb|ACS24885.1| spore cortex-lytic enzyme [Geobacillus sp. WCH70] Length = 270 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + + G V L+ RL G + + F AV+ FQ +GL Sbjct: 29 KAFSNQVIQRGAVGDDVIELQARLQYIGFY--NGKIDGVFGWNTYWAVRNFQYEYGLPVD 86 Query: 155 GMVDSSTLEAMNV 167 G+V ST + Sbjct: 87 GLVGESTKAKLVK 99 >gi|291299342|ref|YP_003510620.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568562|gb|ADD41527.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 323 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LGN ++ L +G + AFDA ESAVK FQ GLD G+V T E Sbjct: 41 LGNRGADTLSVQHLLAQAG---HQVEATGAFDAATESAVKKFQESKGLDADGIVGPKTWE 97 Query: 164 AMNVPVD 170 A+ ++ Sbjct: 98 ALAPNLE 104 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I+ W L L G S +V+ L+ +L L ++ FD + V+ FQ Sbjct: 89 GIVGPKTWEAL-APNLETGASGEAVKALQVQLNAKQRLSLE--VNGTFDDALAGEVRKFQ 145 Query: 147 MRHGLDPSGMVDSSTLE 163 + +G V+ T Sbjct: 146 EHAKISATGAVNVETWR 162 >gi|291299343|ref|YP_003510621.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568563|gb|ADD41528.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 379 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 10/142 (7%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + + + + + F D + + QT+ + + Sbjct: 242 DLATGSKGSEVRAAQCLLADAGFPTGDKPSGSFDDKTVTATKE---FQTKVGLEA-SGKV 297 Query: 90 SRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + W L L G+S V R++ L + L F + AV + Sbjct: 298 DKHTWTALLSMGETPELKEGSSGADVSRVQRALTAA--LGAEVSQDGQFGPKTKQAVTDY 355 Query: 146 QMRHGLDPSGMVDSSTLEAMNV 167 Q G++ +G+V++ T +A+ Sbjct: 356 QTAAGVEANGVVNAETWKALQA 377 >gi|227821290|ref|YP_002825260.1| hypothetical protein NGR_c07140 [Sinorhizobium fredii NGR234] gi|227340289|gb|ACP24507.1| hypothetical protein NGR_c07140 [Sinorhizobium fredii NGR234] Length = 253 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + RQ+ R + ++V+ L + +G R V +GR Sbjct: 89 PAVPYRQIDPRFYRQEVSDPFGEAPGTIVVDTADRYLYLIGSGGSATRYGVGLGREGFA- 147 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P S+I + +L + Y DN Sbjct: 148 WSGRGVIQWKQKWPKWTPPDSMIARQ--PVLAK---YSADNGGM---------------- 186 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVR 345 PG N + S + F + + +H TPE +SGCVR Sbjct: 187 ------------PPGLDNPLGSRALYIFQNGQDTLYRVHGTPEWQSIGK---AVSSGCVR 231 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + P Sbjct: 232 MINQDVIDLYARVRGKAP 249 >gi|254707169|ref|ZP_05168997.1| ErfK/YbiS/YcfS/YnhG [Brucella pinnipedialis M163/99/10] gi|254709288|ref|ZP_05171099.1| ErfK/YbiS/YcfS/YnhG [Brucella pinnipedialis B2/94] gi|256030811|ref|ZP_05444425.1| ErfK/YbiS/YcfS/YnhG [Brucella pinnipedialis M292/94/1] gi|256158836|ref|ZP_05456693.1| ErfK/YbiS/YcfS/YnhG [Brucella ceti M490/95/1] gi|256254217|ref|ZP_05459753.1| ErfK/YbiS/YcfS/YnhG [Brucella ceti B1/94] gi|260169715|ref|ZP_05756526.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|261221367|ref|ZP_05935648.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|261314645|ref|ZP_05953842.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261316797|ref|ZP_05955994.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261759254|ref|ZP_06002963.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|265987867|ref|ZP_06100424.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|265997327|ref|ZP_06109884.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|260919951|gb|EEX86604.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|261296020|gb|EEX99516.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261303671|gb|EEY07168.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261739238|gb|EEY27234.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|262551795|gb|EEZ07785.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|264660064|gb|EEZ30325.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] Length = 206 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 33 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E PE + DPG N + + + Sbjct: 93 GIGVGRRGFEWSGTARVAMKREWPTWTPPSATIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 186 >gi|225626679|ref|ZP_03784718.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|225618336|gb|EEH15379.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] Length = 210 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 37 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRY 96 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E PE + DPG N + + + Sbjct: 97 GIGVGRRGFEWSGTARVAMKREWPTWTPPSATIKRQPELAKYRNGMDPGLRNPLGARALY 156 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 157 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 190 >gi|190890519|ref|YP_001977061.1| hypothetical protein RHECIAT_CH0000898 [Rhizobium etli CIAT 652] gi|190695798|gb|ACE89883.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 228 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 42/194 (21%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 D++ A V V + ++ R K L V+++ L VE R Sbjct: 30 DNAQRPAQIVRVAQMPKYVKPQFKRKKVRLMTTEAAGTVIIDTNNKYLYLVEGNNRATRY 89 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + VGR D +I R P W P + +++ Sbjct: 90 GIGVGR-DGFGWSGIVKIGRKAEWPAWTPPAEMRRRE----------------------- 125 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNN 334 + + Q+ G+ N + + + R+ + +H T +P Sbjct: 126 ------------AAKGHIIPAYQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGL 173 Query: 335 VVRFETSGCVRVRN 348 + +SGC+R+ N Sbjct: 174 NM---SSGCIRMMN 184 >gi|303241300|ref|ZP_07327805.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] gi|302591139|gb|EFL60882.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] Length = 1528 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 16/130 (12%) Query: 110 SVQRLRERLIISGDLDPSKGLSV-------AFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V L++ L+ G L+ + + E+AVK FQ ++GLD G V T Sbjct: 1007 DVIVLQKILVSLGLLEMPIDPNTKTYVPFGTYAGLTENAVKKFQKKNGLDQDGKVGKITW 1066 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + +P D Q N + IP +L G + + VG Sbjct: 1067 NKLMLPWDENSAQPDRN----SWSYIYILQNDRFYTAIPQVTLSTPTKG-----TKIKVG 1117 Query: 223 RVDRQTPILH 232 R T Sbjct: 1118 EPLRITANGT 1127 >gi|265999208|ref|ZP_05465370.2| protein YBIS [Brucella melitensis bv. 2 str. 63/9] gi|263092660|gb|EEZ16881.1| protein YBIS [Brucella melitensis bv. 2 str. 63/9] Length = 277 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 146 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 203 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 204 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 229 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H +P + +SGC+R+RN Sbjct: 230 G-STLYRIHGANQPWTIGKAM---SSGCIRMRN 258 >gi|225686039|ref|YP_002734011.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] gi|225642144|gb|ACO02057.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] Length = 244 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 40/153 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 113 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 170 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 171 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 196 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H +P + +SGC+R+RN Sbjct: 197 G-STLYRIHGANQPWTIGKAM---SSGCIRMRN 225 >gi|299134597|ref|ZP_07027789.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298590407|gb|EFI50610.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 378 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 48/207 (23%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + + L A + P ++L L R + + K ++V+ L + +R Sbjct: 152 MTVAVLPAEDQPETGPRQELSPRLRRQEVNYQTKEPAGTIIVDTANTQLYYILGHGRAIR 211 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 V VGR D T +I R P W P +I++ Sbjct: 212 YGVRVGR-DGFTWTGVQKITRKAEWPDWHPPPEMIERQ---------------------- 248 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNV 335 P G N + + + + Y +H T +P Sbjct: 249 -----------------PYLPRFMAGGDGNPLGARAMYLGN--TVYRIHGTNQPSTIGK- 288 Query: 336 VRFETSGCVRV--RNIIDLDVWLLKDT 360 F +SGC+ + ++ DL + T Sbjct: 289 --FVSSGCIGMLNEDVEDLFDRVKVGT 313 >gi|187777208|ref|ZP_02993681.1| hypothetical protein CLOSPO_00754 [Clostridium sporogenes ATCC 15579] gi|187774136|gb|EDU37938.1| hypothetical protein CLOSPO_00754 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + +++ +L G + G+ F +AV+ FQ ++GL G++ TL A Sbjct: 43 GHRGDIISQVQRKLKAWGYY--NGGVDGIFGHGTYTAVRSFQSKNGLTVDGIIGDKTLVA 100 Query: 165 MNVP 168 + + Sbjct: 101 LGIN 104 >gi|88808650|ref|ZP_01124160.1| hypothetical protein WH7805_03132 [Synechococcus sp. WH 7805] gi|88787638|gb|EAR18795.1| hypothetical protein WH7805_03132 [Synechococcus sp. WH 7805] Length = 157 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 48/164 (29%), Gaps = 52/164 (31%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 Q + + +++ L +NGKV R V +G + TP I Sbjct: 23 PMQARAEKTIEISLKQRYLTLFDNGKVVERFPVAIGAPESPTPAGSYAIT---------- 72 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +K+ + + GK + PG N Sbjct: 73 -----RKEEAP---------------VYHKGGKVI-------------------APGPKN 93 Query: 307 AMASTKI-EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 + + F + Y +H T P + + GC+R+ N Sbjct: 94 PVGVRYMAYFQIGSGEYAIHGTAWPNWV-KLRAAVSLGCIRMLN 136 >gi|319645390|ref|ZP_07999622.1| CtpA protein [Bacillus sp. BT1B_CT2] gi|317392276|gb|EFV73071.1| CtpA protein [Bacillus sp. BT1B_CT2] Length = 465 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G++ V+ ++ L G + G FDA E+AVK FQ L +G++ Sbjct: 375 SKKEYKAGSTGDEVKAAQQMLQALGYKLNATGA---FDAQTEAAVKAFQKDQKLKTTGIL 431 Query: 158 DSSTLEAMNVPVDLRI 173 T ++ + ++ Sbjct: 432 TGETTISLTSKLQDKL 447 >gi|217077446|ref|YP_002335164.1| ErfK/YbiS/YcfS/YnhG family [Thermosipho africanus TCF52B] gi|217037301|gb|ACJ75823.1| ErfK/YbiS/YcfS/YnhG family [Thermosipho africanus TCF52B] Length = 379 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 11/121 (9%) Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T + I+ N ++ + + K++ Sbjct: 220 TVQFTEGLTSIVVNLSTSRLAVYYAGKLVKVFPVAIGRSDSMPPGIYWILNKQIDPALY- 278 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 W P IN + + ++ + +H T +P R + GCVR+ Sbjct: 279 WYGEYIPPR------SPINGLGTRFLQLSNP-TYGIHGTTKPWEIG---RRISHGCVRMF 328 Query: 348 N 348 N Sbjct: 329 N 329 >gi|194015260|ref|ZP_03053876.1| N-acetylmuramoyl-L-alanine amidase CwlA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] gi|194012664|gb|EDW22230.1| N-acetylmuramoyl-L-alanine amidase CwlA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] Length = 279 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQ-MRHG 150 +P + G +V +L+ L + G+ + +AVK FQ + G Sbjct: 194 AVPTGVIRQGARGTAVTQLQNALAAVYFYPDKGAKNNGIDGIYGPKTANAVKRFQSTQAG 253 Query: 151 LDPSGMVDSSTLEAMNV 167 + G+ S+T + Sbjct: 254 IANDGIYGSATRAKLVA 270 >gi|52080651|ref|YP_079442.1| carboxy-terminal processing protease [Bacillus licheniformis ATCC 14580] gi|52786025|ref|YP_091854.1| CtpA [Bacillus licheniformis ATCC 14580] gi|52003862|gb|AAU23804.1| carboxy-terminal processing protease [Bacillus licheniformis ATCC 14580] gi|52348527|gb|AAU41161.1| CtpA [Bacillus licheniformis ATCC 14580] Length = 465 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G++ V+ ++ L G + G FDA E+AVK FQ L +G++ Sbjct: 375 SKKEYKAGSTGDEVKAAQQMLQALGYKLNATGA---FDAQTEAAVKAFQKDQKLKTTGIL 431 Query: 158 DSSTLEAMNVPVDLRI 173 T ++ + ++ Sbjct: 432 TGETTISLTSKLQDKL 447 >gi|261211540|ref|ZP_05925828.1| general secretion pathway protein A/general secretion pathway protein B [Vibrio sp. RC341] gi|260839495|gb|EEX66121.1| general secretion pathway protein A/general secretion pathway protein B [Vibrio sp. RC341] Length = 783 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 2/95 (2%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + + + W R L G V L +L L + + Sbjct: 424 QRYRIARQWLEPLWRGQYALLWQGGFSRTLKQGMRGDDVALLESKLAQV--LGEPERSTD 481 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 FD + V+LFQ + G+ TL Sbjct: 482 LFDKDISRKVELFQRWQSMHVDGIAGKQTLRRFRT 516 >gi|170742571|ref|YP_001771226.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168196845|gb|ACA18792.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 214 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + V+V+ L V + +R V VGR T I Sbjct: 72 RELVPFDGRYAPGTVVVSTAERRLYYVLGDGMAIRYGVGVGRPG-FTWSGTKTIVAKKEW 130 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P K+M+A P+Y+ Sbjct: 131 PSWTPP-----KEMLARRPDLPRYMA---------------------------------- 151 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP +SGC+R+ N Sbjct: 152 GGIDNPLGARAMYIG-GTLYRIHGSNEPDTIGQ---AVSSGCIRMTN 194 >gi|297531502|ref|YP_003672777.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. C56-T3] gi|297254754|gb|ADI28200.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. C56-T3] Length = 165 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 278 GKEVFVEEVDW----NSPEPPNFIFR-QDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 G+ + + + +F+ + P + + + +H T +P Sbjct: 74 GRTIRTYPIGVGKMVTATPVGDFVIVNRQPNPGGPFGAMWLSLSKIH-YGIHGTNDPSSI 132 Query: 333 NNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + + GC+R+ N +++L + T Sbjct: 133 GK---YVSKGCIRMHNKDVLELASIVPNGTE 160 >gi|182436235|ref|YP_001823954.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776864|ref|ZP_08236129.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] gi|178464751|dbj|BAG19271.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657197|gb|EGE42043.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] Length = 260 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V++L+ R ++G + AF ++AV+ FQ +GL G+ Sbjct: 54 SGTLQEGSSGEAVRQLQIR--VAGYPGTGNQIAIDGAFGPATKAAVQRFQAAYGLAADGI 111 Query: 157 VDSSTLEAM 165 + T + Sbjct: 112 AGAQTFNKI 120 >gi|209548062|ref|YP_002279979.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533818|gb|ACI53753.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 228 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 42/148 (28%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L +E R + VGR D +I R P W P + +++ Sbjct: 76 YLYLIEGNNRATRYGIGVGR-DGFGWSGVVKIGRKAEWPAWTPPAEMRRRE--------- 125 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNT 321 + + Q+ G+ N + + + R+ Sbjct: 126 --------------------------AAKGHIIPAFQEGGEDNPLGARAMYLYQGGRDTI 159 Query: 322 Y-MHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T +P + +SGC+R+ N Sbjct: 160 FRIHGTNQPWTIGLNM---SSGCIRMMN 184 >gi|153868406|ref|ZP_01998357.1| hypothetical protein BGS_0497 [Beggiatoa sp. SS] gi|152144274|gb|EDN71643.1| hypothetical protein BGS_0497 [Beggiatoa sp. SS] Length = 147 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 3/102 (2%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERL-IISGDLD 125 +S +T +AI Y W P LP+ L +G S+ SV +R+ L I G Sbjct: 35 ALSGQTFEFPIEAINEYWLGQFLVLWQPPTLPVPVLQVGISNESVIWIRKLLDEIEGLRG 94 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 LS FD + V FQ + LDP G+V TL A+ Sbjct: 95 EPHTLSPLFDYALRRRVIAFQRQQKLDPDGIVGEQTLLALQA 136 >gi|329121069|ref|ZP_08249700.1| cell wall hydrolase [Dialister micraerophilus DSM 19965] gi|327471231|gb|EGF16685.1| cell wall hydrolase [Dialister micraerophilus DSM 19965] Length = 248 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G ++ +GNS V+ ++ +L+ G + + E+AV++FQ R L Sbjct: 17 GTGDIGNSAYKIGNSGEIVKLIQRKLVKQG---IKIEIDGKYGKDTENAVRIFQKRKKLK 73 Query: 153 PSGMVDSSTLEAM 165 G++ T A+ Sbjct: 74 VDGIIGEETYFAL 86 >gi|304315730|ref|YP_003850875.1| spore cortex-lytic enzyme [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777232|gb|ADL67791.1| spore cortex-lytic enzyme [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 238 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GNS V R++ RL G D + F AV+ FQ +GL+ +G+VD T A Sbjct: 42 GNSGSDVSRVQSRLKDWGYYD--GPVDGFFGVRTWLAVRKFQANNGLNVTGIVDDETKVA 99 Query: 165 MNVPVDLRIRQ 175 + Sbjct: 100 LGFNTSTSAAI 110 >gi|153953613|ref|YP_001394378.1| gamma-D-glutamyl-L-diamino acid endopeptidase [Clostridium kluyveri DSM 555] gi|219854235|ref|YP_002471357.1| hypothetical protein CKR_0892 [Clostridium kluyveri NBRC 12016] gi|146346494|gb|EDK33030.1| Predicted gamma-D-glutamyl-L-diamino acid endopeptidase [Clostridium kluyveri DSM 555] gi|219567959|dbj|BAH05943.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 423 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+ V ++ L G + + + AV++FQ HGL G++ +T Sbjct: 4 FKLGSRGTEVMHIQATLKKIGY--NPGVIDGIYGTDTKKAVEIFQRNHGLIVDGIIGPNT 61 Query: 162 LE 163 Sbjct: 62 YR 63 >gi|15965817|ref|NP_386170.1| hypothetical protein SMc04338 [Sinorhizobium meliloti 1021] gi|307315650|ref|ZP_07595182.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307318885|ref|ZP_07598317.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|15075086|emb|CAC46643.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|306895606|gb|EFN26360.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306898675|gb|EFN29339.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 232 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 59/207 (28%), Gaps = 49/207 (23%) Query: 151 LDPSGMVDSSTLEAMNVPVDL------RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 L + + DS T + +N R Q+ R ++++ Sbjct: 37 LAQTQIYDSKTKKWVNYDKRKARQYFARNNQVPEAFRRQMVPFRTAEVPGTIIIDGNQHF 96 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V+ G +R + VGR R+ R P W P ++ + Sbjct: 97 LYLVQPGGQAIRYGIGVGREG-FGWAGIVRVGRTAEWPTWTPPPEMVAR----------- 144 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN--TY 322 W G N + + + Y +N Y Sbjct: 145 -----------------DPNAAKWAGG--------MPGGPDNPLGARALYLYEGDNDTIY 179 Query: 323 -MHDTPEPILFNNVVRFETSGCVRVRN 348 +H T EP +SGC+R+ N Sbjct: 180 RIHGTVEPWTIG---LDVSSGCIRMNN 203 >gi|326778411|ref|ZP_08237676.1| Peptidase M23 [Streptomyces cf. griseus XylebKG-1] gi|326658744|gb|EGE43590.1| Peptidase M23 [Streptomyces cf. griseus XylebKG-1] Length = 340 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + GGW + G S +V ++ + G + ++ + AVK F Sbjct: 203 RGVDLSGGWSRID-----PGASGATVVVIQHLMNQRG---HGLAVDGSYGSLSVGAVKRF 254 Query: 146 QMRHGLDPSGMVDSSTL 162 Q GL G V +T Sbjct: 255 QRSAGLAADGQVGPATW 271 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 K + + G WP L L G S V+ L+ L G + F Sbjct: 252 KRFQRSAGLAADGQVGPATWPVLVY-TLRQGASGSPVRALQTALNRRG---ARLAVDGGF 307 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + SAV+ +Q + L G T A+ Sbjct: 308 GSVTTSAVRAYQSGNRLVTDGEAGPVTWRALT 339 >gi|296141898|ref|YP_003649141.1| cell wall hydrolase/autolysin [Tsukamurella paurometabola DSM 20162] gi|296030032|gb|ADG80802.1| cell wall hydrolase/autolysin [Tsukamurella paurometabola DSM 20162] Length = 395 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 11/78 (14%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSV-----------AFDAYVESAVKLFQMRHG 150 + LG+ +V +R L G L FD ++ A + FQ + G Sbjct: 4 ISLGDHGGAVAEIRGILADQGFLPDYVAPRELVSNGWTLPEAVFDRRLDHATRAFQQQRG 63 Query: 151 LDPSGMVDSSTLEAMNVP 168 L G+V +T A+ Sbjct: 64 LLVDGVVGPATYRALRES 81 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 21/155 (13%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS--DIP-IISKETIAQTEKAIAFYQD 87 I + E + + F + + +P + + +A + Sbjct: 4 ISLGDHGGAVAEIRGILADQGFLPDYVAPRELVSNGWTLPEAVFDRRLDHATRAFQQQRG 63 Query: 88 ILSRGGWPELPIRPLH-----LGN-----------SSVSVQRLRERLIISGDLDPSKGLS 131 +L G R L LG S V L+ RL G + Sbjct: 64 LLVDGVVGPATYRALRESTYQLGARTLSYIASAPPSGDDVAALQARLQNLGFYA--GMID 121 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F + +Q GL G+ +TL ++ Sbjct: 122 GLFGPQTHLGLSAYQREFGLVADGICGPATLRSLT 156 >gi|299132267|ref|ZP_07025462.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298592404|gb|EFI52604.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 257 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 43/153 (28%), Gaps = 46/153 (30%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L V G +R V VGR T I+R P W P +I + Sbjct: 101 YLYLVLGGNRAIRYGVGVGREG-FTWSGVQTISRKAEWPDWHPPAQMIARQ--------- 150 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 P G N + + + + + Sbjct: 151 ------------------------------PYLPRFVAGGPGNPLGARAMYLGHSD-YRI 179 Query: 324 HDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 H T +P F +SGC+R+ N + DL Sbjct: 180 HGTNDPTTIGK---FVSSGCIRLTNTDVEDLFN 209 >gi|303238375|ref|ZP_07324910.1| spore cortex-lytic enzyme [Acetivibrio cellulolyticus CD2] gi|302594079|gb|EFL63792.1| spore cortex-lytic enzyme [Acetivibrio cellulolyticus CD2] Length = 234 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ +L G D + + +AV+ FQ ++GL G+ TL A Sbjct: 43 GSTGQEVKNIQYKLSNWGYYD--GAIDGEYGYKTYTAVRSFQYKNGLTVDGVAGPETLSA 100 Query: 165 MNVP 168 + + Sbjct: 101 LGLS 104 >gi|229045449|ref|ZP_04192106.1| Spore cortex-lytic enzyme [Bacillus cereus AH676] gi|296503296|ref|YP_003664996.1| cell wall hydrolase CwlJ [Bacillus thuringiensis BMB171] gi|228724891|gb|EEL76191.1| Spore cortex-lytic enzyme [Bacillus cereus AH676] gi|296324348|gb|ADH07276.1| cell wall hydrolase cwlJ [Bacillus thuringiensis BMB171] Length = 259 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|229110200|ref|ZP_04239774.1| Spore cortex-lytic enzyme [Bacillus cereus Rock1-15] gi|228673186|gb|EEL28456.1| Spore cortex-lytic enzyme [Bacillus cereus Rock1-15] Length = 259 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|222085236|ref|YP_002543766.1| hypothetical protein Arad_1389 [Agrobacterium radiobacter K84] gi|221722684|gb|ACM25840.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 246 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +Q+ R + V+VN L E G +R + VGR Sbjct: 80 PPVPYQQIDPQFYRQRVADPTGEAPGSVVVNTRERHLYVTEAGGTAMRYGIGVGREGFA- 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + E V + Sbjct: 139 WQGRGVIQWRKKWPRWNPPDEMVARQ----------------------------PELVKY 170 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + DPG N + + + ++++ Y +H P+ +SGCVR Sbjct: 171 SIANGGM-----DPGLKNPLGARALYIFEDNQDSLYRLHGNPDWRSIGK---AVSSGCVR 222 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + + P Sbjct: 223 LLNQDVIDLYDRVPERAP 240 >gi|218515887|ref|ZP_03512727.1| hypothetical protein Retl8_20501 [Rhizobium etli 8C-3] Length = 228 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 67/217 (30%), Gaps = 57/217 (26%) Query: 150 GLDPSG-MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR-----YVLVNIPAA 203 GL +G ++ + A P Q ++R+ ++ + +++ A Sbjct: 7 GLAAAGLVLSLMSASAFAAPAGSDNTQRPAQIVRVAQMPKYVKPQFKRKKVHLMTTEAAG 66 Query: 204 ---------SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 L VE R + VGR D +I R P W P + +++ Sbjct: 67 TVIIDTNNKYLYLVEGNNRATRYGIGVGR-DGFGWSGIVKIGRKAEWPAWTPPAEMRRRE 125 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + Q+ G+ N + + + Sbjct: 126 -----------------------------------AAKGHIIPAYQEGGEDNPLGARAMY 150 Query: 315 F--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 R+ + +H T +P + +SGC+R+ N Sbjct: 151 LYQGGRDTIFRIHGTNQPWTIGLNM---SSGCIRMMN 184 >gi|206971930|ref|ZP_03232879.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH1134] gi|206733315|gb|EDZ50488.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH1134] Length = 259 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|42781838|ref|NP_979085.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus ATCC 10987] gi|206973778|ref|ZP_03234696.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus H3081.97] gi|217960192|ref|YP_002338752.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH187] gi|222096255|ref|YP_002530312.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus Q1] gi|229139388|ref|ZP_04267959.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST26] gi|42737762|gb|AAS41693.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus ATCC 10987] gi|206747934|gb|EDZ59323.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus H3081.97] gi|217063319|gb|ACJ77569.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH187] gi|221240313|gb|ACM13023.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus Q1] gi|228643935|gb|EEL00196.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST26] Length = 259 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|39934220|ref|NP_946496.1| ErfK/YbiS/YcfS/YnhG protein [Rhodopseudomonas palustris CGA009] gi|39648068|emb|CAE26588.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] Length = 267 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 44/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ P L V+ LR V VGR T I P W P+ ++ + Sbjct: 140 IVIDTPNKFLYLVQGDGKALRYGVGVGRPG-FTWSGVKTITAKREWPAWTPPKEMLARR- 197 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ + G N + + + Sbjct: 198 --------------------------------------PDLPRHMEGGPANPLGARAMYL 219 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC+R+RN Sbjct: 220 GSS-LYRIHGSNEPWTIGTN---VSSGCIRMRN 248 >gi|30020874|ref|NP_832505.1| cell wall hydrolase cwlJ [Bacillus cereus ATCC 14579] gi|218234005|ref|YP_002367468.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus B4264] gi|228921423|ref|ZP_04084746.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939871|ref|ZP_04102448.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972761|ref|ZP_04133360.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979345|ref|ZP_04139681.1| Spore cortex-lytic enzyme [Bacillus thuringiensis Bt407] gi|228985846|ref|ZP_04145995.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229070227|ref|ZP_04203479.1| Spore cortex-lytic enzyme [Bacillus cereus F65185] gi|229079940|ref|ZP_04212471.1| Spore cortex-lytic enzyme [Bacillus cereus Rock4-2] gi|229103362|ref|ZP_04234044.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-28] gi|229116269|ref|ZP_04245659.1| Spore cortex-lytic enzyme [Bacillus cereus Rock1-3] gi|229128092|ref|ZP_04257074.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-Cer4] gi|229145328|ref|ZP_04273717.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST24] gi|229156330|ref|ZP_04284426.1| Spore cortex-lytic enzyme [Bacillus cereus ATCC 4342] gi|229179035|ref|ZP_04306392.1| Spore cortex-lytic enzyme [Bacillus cereus 172560W] gi|229190847|ref|ZP_04317839.1| Spore cortex-lytic enzyme [Bacillus cereus ATCC 10876] gi|61242533|sp|P0A3V0|SLEB_BACCR RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; AltName: Full=Germination-specific amidase; Flags: Precursor gi|61242541|sp|P0A3V1|SLEB_BACCE RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; AltName: Full=Germination-specific amidase; Flags: Precursor gi|1644192|dbj|BAA09800.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus] gi|29896427|gb|AAP09706.1| Cell wall hydrolase cwlJ [Bacillus cereus ATCC 14579] gi|218161962|gb|ACK61954.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus B4264] gi|228592637|gb|EEK50464.1| Spore cortex-lytic enzyme [Bacillus cereus ATCC 10876] gi|228604403|gb|EEK61867.1| Spore cortex-lytic enzyme [Bacillus cereus 172560W] gi|228627205|gb|EEK83936.1| Spore cortex-lytic enzyme [Bacillus cereus ATCC 4342] gi|228638167|gb|EEK94608.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST24] gi|228655367|gb|EEL11223.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-Cer4] gi|228667101|gb|EEL22553.1| Spore cortex-lytic enzyme [Bacillus cereus Rock1-3] gi|228679858|gb|EEL34053.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-28] gi|228703319|gb|EEL55774.1| Spore cortex-lytic enzyme [Bacillus cereus Rock4-2] gi|228712890|gb|EEL64813.1| Spore cortex-lytic enzyme [Bacillus cereus F65185] gi|228773881|gb|EEM22298.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228780349|gb|EEM28580.1| Spore cortex-lytic enzyme [Bacillus thuringiensis Bt407] gi|228786976|gb|EEM34956.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819802|gb|EEM65850.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838196|gb|EEM83514.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|312828406|emb|CBY16475.1| SceA protein [Bacillus thuringiensis serovar kurstaki str. YBT-1520] gi|326940519|gb|AEA16415.1| cell wall hydrolase cwlJ [Bacillus thuringiensis serovar chinensis CT-43] Length = 259 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|192289746|ref|YP_001990351.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] gi|192283495|gb|ACE99875.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 262 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 44/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ P L V+ LR V VGR T I P W P+ ++ + Sbjct: 135 IVIDTPNKFLYLVQGDGKALRYGVGVGRPG-FTWSGVKTITAKREWPAWTPPKEMLARR- 192 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ + G N + + + Sbjct: 193 --------------------------------------PDLPRHMEGGPANPLGARAMYL 214 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC+R+RN Sbjct: 215 GSS-LYRIHGSNEPWTIGTN---VSSGCIRMRN 243 >gi|239828519|ref|YP_002951143.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. WCH70] gi|239808812|gb|ACS25877.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. WCH70] Length = 165 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 31/91 (34%), Gaps = 11/91 (12%) Query: 278 GKEVFVEEVDW----NSPEPPNFIFR-QDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 G+ + + + +F+ + P + + + +H T +P Sbjct: 74 GRTIRTYPIGVGKMVTATPVGDFVIVNRQPNPGGPFGAMWLSLSKVH-YGIHGTNDPSSI 132 Query: 333 NNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + + GC+R+ N +++ + T Sbjct: 133 GK---YVSKGCIRMHNKDVLEFASIVPNGTE 160 >gi|294632792|ref|ZP_06711351.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces sp. e14] gi|292830573|gb|EFF88923.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces sp. e14] Length = 248 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 7/86 (8%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESA 141 D GW R L G S V L+ R+ PS G+ +F +A Sbjct: 30 LTDTARAYGW----SRTLSQGASGADVTELQIRVAGWAADSPSHSIVGVDGSFGPATAAA 85 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ FQ +GL G+ +T +N Sbjct: 86 VRRFQAAYGLGVDGVAGPATQAQLNA 111 >gi|188589391|ref|YP_001922286.1| spore cortex-lytic enzyme, pre-pro-form [Clostridium botulinum E3 str. Alaska E43] gi|188499672|gb|ACD52808.1| spore cortex-lytic enzyme, pre-pro-form [Clostridium botulinum E3 str. Alaska E43] Length = 697 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 19/153 (12%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD----LDPSK 128 + +K + I G P PL L + + +V+ ++++L + Sbjct: 298 QYYFGYDKTLVRATMIE--GIPESYPGTPLRLNDENNNVKVIQKQLNRISKNFPAIPKIP 355 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + FD E AVK+FQ L G+V +T RI + V + R+ +L + Sbjct: 356 YENGKFDKITEDAVKVFQKVFNLTQDGIVGRATWY--------RISSIYVGVKRLAELDQ 407 Query: 189 QK-----MGLRYVLVNIPAASLEAVENGKVGLR 216 + V P L+ G+ Sbjct: 408 EPEIDGENPPPDSGVEYPGYLLKYGSRGEKVKE 440 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG+ V ++ L + + + FD E++VK Q + GL + Sbjct: 609 PGFDLELGDQDGYVTVFQKYVNVLAKNNYISSQIEENGVFDKRTENSVKELQEKFGLKVT 668 Query: 155 GMVDSSTLE 163 G+VD T + Sbjct: 669 GVVDKITWD 677 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG--DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G+ V+ ++ L + PS F + V +FQ GL P G Sbjct: 425 PGYLLKYGSRGEKVKEVQNYLSVISKSYNIPSIKADGIFGQMTKDTVIVFQRLFGLSPDG 484 Query: 156 MVDSSTLEAM 165 +V +T + Sbjct: 485 VVGLNTWNKI 494 >gi|297545556|ref|YP_003677858.1| carboxyl-terminal protease [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843331|gb|ADH61847.1| carboxyl-terminal protease [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 456 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ V+ +++ L I + F +AVK Q + GL P+G+ D Sbjct: 370 GTLKVGSKGNDVKIIQKHLNILKF--NAGPEDGIFGPKTANAVKKLQKKAGLTPTGVFDK 427 Query: 160 STLEAMNV 167 +T +AM Sbjct: 428 NTYDAMVK 435 >gi|229150962|ref|ZP_04279173.1| Spore cortex-lytic enzyme [Bacillus cereus m1550] gi|228632522|gb|EEK89140.1| Spore cortex-lytic enzyme [Bacillus cereus m1550] Length = 259 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|148381127|ref|YP_001255668.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 3502] gi|153930963|ref|YP_001385502.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 19397] gi|153934739|ref|YP_001388908.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. Hall] gi|148290611|emb|CAL84740.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152927007|gb|ABS32507.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 19397] gi|152930653|gb|ABS36152.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. Hall] Length = 231 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 11/74 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + ++ + +H T P Sbjct: 68 ATGKSSTPSPIGTWKITNKGTW-------GSSFGGRWMGLNVPWGKYGIHGTNAPNSIGW 120 Query: 335 VVRFETSGCVRVRN 348 + GC+R++N Sbjct: 121 SS---SHGCIRMKN 131 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G V +++ L + + ++S V FQ + + S ++S Sbjct: 162 RPIEPGMRGSDVYEVQKLLKEKKYY--NGDPDGIYGESMKSVVHKFQEDNNIPLSNTINS 219 Query: 160 STLEAMNV 167 S + + V Sbjct: 220 SFYKKLGV 227 >gi|21220813|ref|NP_626592.1| peptidodoglycan-binding membrane protein [Streptomyces coelicolor A3(2)] gi|8246786|emb|CAB92821.1| putative peptidodoglycan-binding membrane protein [Streptomyces coelicolor A3(2)] Length = 452 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 20/109 (18%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII--- 120 S P S T A G L G+ V L++RL Sbjct: 352 RSAEPSQSTTTPAD--------DAPQESGDDDSPDGGTLSRGDQGPEVVELQQRLKEKWM 403 Query: 121 -SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDSSTLEAMN 166 GDLD +D VE AV+ +Q + + G+ T + Sbjct: 404 YWGDLDGD------YDRQVEDAVRQYQWENRIRTDRVGVYGPDTRRKLE 446 >gi|56963693|ref|YP_175424.1| peptidoglycan binding domain-containing protein [Bacillus clausii KSM-K16] gi|56909936|dbj|BAD64463.1| peptidoglycan-binding domain-containing protein [Bacillus clausii KSM-K16] Length = 362 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 20/151 (13%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDR------FDNFLARVDMGIDSDIPIISKET 74 M ++ ++ + E + + + ++ + + + + Sbjct: 29 TMANAMSDRTLSQGDSGEQVEQLQLLLTDNGVFDKEDINGTFGNSTASAIKEF----QAS 84 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 IA Q + + + L G+ V+ L+++L+ + F Sbjct: 85 EDLLVDGIAGLQTLGA--------LHALEHGDEGKLVEELQKQLLNLNYYKGE--VDGLF 134 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + E AV+ FQ +G+ G+ +T + Sbjct: 135 GSLTERAVENFQSDNGIAVDGIAGPATYSKL 165 >gi|304404662|ref|ZP_07386323.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] gi|304346469|gb|EFM12302.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] Length = 389 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ V R++ L +G P + F + E AV+ FQ + L+ G+V T Sbjct: 11 IKRGSKGEEVTRIQTLLNKAGF--PPGTVDSDFGSNTEEAVRNFQKANHLEVDGVVGKDT 68 Query: 162 LE 163 Sbjct: 69 WA 70 >gi|157364476|ref|YP_001471243.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga lettingae TMO] gi|157315080|gb|ABV34179.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga lettingae TMO] Length = 399 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 53/153 (34%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++VN A L NG + V +G+ D P YW I++K++ Sbjct: 267 IVVNTTVARLALYYNGTLVKSFPVAIGKSDTTPP-----------GVYW-----IVKKEI 310 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 L G+ + IN + + ++ Sbjct: 311 DPAL---------------YWYGEYIPPRS------------------PINGLGTRYLQL 337 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T +P + GC+R+ N Sbjct: 338 SNP-TYGIHGTTKPWEIGKR---ISHGCIRMLN 366 >gi|209516749|ref|ZP_03265601.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. H160] gi|209502866|gb|EEA02870.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. H160] Length = 272 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G++ V+ ++ L +G + + +AV +Q GL P G+ Sbjct: 4 DVLQQGDTGDDVKTWQQCLARNGF--NPGEIDGVYGQATVAAVIAYQKSEGLLPDGVAGP 61 Query: 160 STLEAMN 166 TL A+ Sbjct: 62 RTLLALG 68 >gi|323706253|ref|ZP_08117820.1| spore cortex-lytic enzyme [Thermoanaerobacterium xylanolyticum LX-11] gi|323534417|gb|EGB24201.1| spore cortex-lytic enzyme [Thermoanaerobacterium xylanolyticum LX-11] Length = 238 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GNS V R++ RL G D + F AV+ FQ +GL+ +G+VD T A Sbjct: 42 GNSGSDVSRVQSRLKDWGYYD--GPVDGFFGVRTWLAVRKFQANNGLNVTGIVDDQTKVA 99 Query: 165 MNVPVDL 171 + + Sbjct: 100 LGFNISQ 106 >gi|240139107|ref|YP_002963582.1| hypothetical protein MexAM1_META1p2527 [Methylobacterium extorquens AM1] gi|240009079|gb|ACS40305.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 205 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 44/153 (28%), Gaps = 44/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V+ L V G +R V VGR T ++I P W P ++I + Sbjct: 78 IVVSTAERRLYYVMPGGQAVRYGVGVGRPG-FTWSGVNKITAKREWPGWTPPAAMIARR- 135 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ G N + + + Sbjct: 136 --------------------------------------PDLPRYMAGGIENPLGARAMYI 157 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H + EP +SGC+R+ N Sbjct: 158 GKSE-YRIHGSNEPDTIGQ---AVSSGCIRMTN 186 >gi|169334010|ref|ZP_02861203.1| hypothetical protein ANASTE_00402 [Anaerofustis stercorihominis DSM 17244] gi|169258727|gb|EDS72693.1| hypothetical protein ANASTE_00402 [Anaerofustis stercorihominis DSM 17244] Length = 230 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + V+ ++E+L G D S + F A E AVK FQ ++GL G STLE Sbjct: 34 GSPAAHVKPVQEKLKRWGYYDGS--VDGKFGAATEKAVKYFQRKNGLTQDGKAGKSTLEK 91 Query: 165 MN 166 M Sbjct: 92 MG 93 >gi|291300295|ref|YP_003511573.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290569515|gb|ADD42480.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 364 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+S V + L SG + +D +VK FQ GL +G +DS Sbjct: 226 ALKDGDSGDEVTAAQCLLDKSGRPTTDGDPNGEYDKATAKSVKQFQADIGLKETGEIDSH 285 Query: 161 TLEAM 165 T A+ Sbjct: 286 TWTAL 290 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G +V RL+ L + L+ + + F A +A K +Q + GLD G+V +T Sbjct: 299 LQEGEEGRNVSRLQRALTAA--LETTVPIDGKFTAETTAAAKKYQEKAGLDADGIVGVNT 356 Query: 162 LEAMNV 167 A+ Sbjct: 357 WRALRA 362 >gi|330503105|ref|YP_004379974.1| PG-binding-1 domain-containing protein [Pseudomonas mendocina NK-01] gi|328917391|gb|AEB58222.1| PG-binding-1 domain-containing protein [Pseudomonas mendocina NK-01] Length = 285 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ S +VQ+L+ L +G F E AV+ +Q++ GL G+ T Sbjct: 7 LRHGDKSQAVQQLQWALNAAG---ARLEPDGDFGDETEKAVRAYQLKVGLVVDGVAGEKT 63 Query: 162 LEAMNVPVDLRI 173 L A+ R+ Sbjct: 64 LSALAGADCSRL 75 >gi|307941741|ref|ZP_07657096.1| ErfK/YbiS/YcfS/YnhG [Roseibium sp. TrichSKD4] gi|307775349|gb|EFO34555.1| ErfK/YbiS/YcfS/YnhG [Roseibium sp. TrichSKD4] Length = 261 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 53/186 (28%), Gaps = 44/186 (23%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 ++ P + RQ+ + +++N L V+ R V VG Sbjct: 101 ASVRNPAPQQRRQIAPQFLPTIVDYRGPHKAGTIIINTNEKYLYLVQKDGTARRYGVGVG 160 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + + ++ R P W P ++ ++ Sbjct: 161 KPGFE-WAGTHKVTRKAEWPDWRPPAAMRKRR---------------------------- 191 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 P+ G N + + + +H + +P + +SG Sbjct: 192 -----------PDLPNFMPGGPENPLGARALYLG-STLYRIHGSNQPWTIGH---AVSSG 236 Query: 343 CVRVRN 348 C+R+RN Sbjct: 237 CIRMRN 242 >gi|226945800|ref|YP_002800873.1| PG-binding-1 domain-containing protein [Azotobacter vinelandii DJ] gi|226720727|gb|ACO79898.1| PG-binding-1 domain-containing protein [Azotobacter vinelandii DJ] Length = 276 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L + +++V L+++L G + E AV+ +Q R GL G+ Sbjct: 3 TLRLDDRNLAVLTLQKQLNALG---AGLYPDGHYGEQTEQAVRDYQRRTGLVVDGIAGPK 59 Query: 161 TLEAMN 166 T+ A+ Sbjct: 60 TMAALA 65 >gi|260575033|ref|ZP_05843034.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sp. SW2] gi|259022655|gb|EEW25950.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sp. SW2] Length = 275 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 60/198 (30%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + +L R + + +++N L V +R + VG+ + Sbjct: 56 PAIPLDKLPAQFQRQTVAYQTEEVPGTIIINPSERLLYLVTGKNKAIRYGIAVGKAGFE- 114 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P+ +I + E W Sbjct: 115 WAGVANVAERKLWPTWTPPKEMIARK----------------------------PELARW 146 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSR---NNTYMHDTPEPILFNNVVRFETSGCVR 345 Q G N + + + S +H TP+ + +SGC+R Sbjct: 147 EKG--------QPGGPTNPLGARALYLNSNGRDYGYRIHGTPDWQSIGHN---ASSGCIR 195 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + ++ Sbjct: 196 MINQDVIDLFQRVPENAK 213 >gi|327191147|gb|EGE58191.1| hypothetical protein RHECNPAF_3350013 [Rhizobium etli CNPAF512] Length = 228 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 42/188 (22%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A V V + ++ R K L V+++ L VE R + VGR Sbjct: 36 AQIVRVAQMPKYVKPQFKRKKVRLMTTEAAGTVIIDTNNKYLYLVEGNNRATRYGIGVGR 95 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 D +I R P W P + +++ Sbjct: 96 -DGFGWSGIVKIGRKAEWPAWTPPAEMRRRE----------------------------- 125 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFET 340 + + Q+ G+ N + + + R+ + +H T +P + + Sbjct: 126 ------AAKGHIIPAYQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGLNM---S 176 Query: 341 SGCVRVRN 348 SGC+R+ N Sbjct: 177 SGCIRMMN 184 >gi|148253945|ref|YP_001238530.1| hypothetical protein BBta_2457 [Bradyrhizobium sp. BTAi1] gi|146406118|gb|ABQ34624.1| hypothetical protein BBta_2457 [Bradyrhizobium sp. BTAi1] Length = 226 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%) Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + E PG N M S + ++ + +H T +P +SGC+R Sbjct: 123 SEIERLGVPTFVAPGPDNPMGSRAMYLYANGKDTLFRIHGTNQPEYIGAS---ISSGCIR 179 Query: 346 VRN--IIDLDV--------WLLKDTPTWSRYHIEEVVKTRKT 377 + N IDL +L S Y + ++ T Sbjct: 180 LTNEDAIDLYNRVKVGTIVVVLDPKKGDSPYKPQMALQGGAT 221 >gi|228958984|ref|ZP_04120685.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pakistani str. T13001] gi|229196921|ref|ZP_04323662.1| Spore cortex-lytic enzyme [Bacillus cereus m1293] gi|228586644|gb|EEK44721.1| Spore cortex-lytic enzyme [Bacillus cereus m1293] gi|228800645|gb|EEM47561.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pakistani str. T13001] Length = 239 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 12 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 69 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 70 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 125 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 126 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 157 >gi|15889613|ref|NP_355294.1| hypothetical protein Atu2336 [Agrobacterium tumefaciens str. C58] gi|15157507|gb|AAK88079.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 205 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 43/183 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + +++ L R + + V+V+ PA L V +R V VGR Sbjct: 42 PAMHLDKVKPELRRQEVTYDTSHPAGTVVVDTPARRLYYVMGEGRAMRYGVGVGRQG-LA 100 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I R P W +++++D Sbjct: 101 LKGDAYIGRKSEWPSWTPTANMMRRD---------------------------------- 126 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 P F G N + + + + +H T +P + + +SGC+R Sbjct: 127 --PRNLKFAGGMPGGPNNPLGARALYLYRGGNDTMFRLHGTNQPQSIGHAM---SSGCIR 181 Query: 346 VRN 348 + N Sbjct: 182 MLN 184 >gi|227497955|ref|ZP_03928135.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226832613|gb|EEH64996.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 621 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GW L G + V V+ +++RL IS + F ++AV+ FQ R GL Sbjct: 395 GW---ATNELTPGMNGVKVRIVQQRLGISN-GSALATANGTF----QNAVRNFQRRAGLP 446 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVN 179 +G+VD T AM + Q Q Sbjct: 447 QTGVVDQQTWNAMGTGFSWWVDQYQAT 473 >gi|169794743|ref|YP_001712536.1| putative phage-related cell wall hydrolase [Acinetobacter baumannii AYE] gi|169147670|emb|CAM85533.1| putative phage-related cell wall hydrolase [Acinetobacter baumannii AYE] Length = 280 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ +V L+++L G D + F E AV Q + GL G V Sbjct: 7 LKFGSKGDAVATLQKQLAKMGYKGVKDKPLSVDGHFGESTEFAVIQLQRKFGLVADGKVG 66 Query: 159 SSTLEAMNVP 168 T +A+ Sbjct: 67 DKTRQALAGD 76 >gi|148253206|ref|YP_001237791.1| ErfK/YbiS/YcfS/YnhG family protein [Bradyrhizobium sp. BTAi1] gi|146405379|gb|ABQ33885.1| putative ErfK/YbiS/YcfS/YnhG protein family [Bradyrhizobium sp. BTAi1] Length = 259 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 46/153 (30%), Gaps = 44/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V+ P L V+ LR + VGR T I+ P W P ++ + Sbjct: 132 IVVDTPNKFLYLVQGEGKALRYGIGVGRPG-FTWSGVKTISAKREWPDWTPPPEMLARR- 189 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ + G N + + + Sbjct: 190 --------------------------------------PDLPRHMEGGPENPLGARAMYL 211 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC+R+RN Sbjct: 212 GSS-LYRIHGSNEPWTIGTN---VSSGCIRMRN 240 >gi|83943946|ref|ZP_00956403.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfitobacter sp. EE-36] gi|83954519|ref|ZP_00963230.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfitobacter sp. NAS-14.1] gi|83840803|gb|EAP79974.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfitobacter sp. NAS-14.1] gi|83845193|gb|EAP83073.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfitobacter sp. EE-36] Length = 190 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 52/217 (23%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVN---LMRIKKLLEQK-MGLRYVLVNIPAASLEAVE-NG 211 + L A PV ++ N +G ++ + + +L +G Sbjct: 20 FTPALLRA-QTPVPEIAAPVRHNTNGFSSQNWQDHFDTLGKAAIVADTSSRALHYWGGDG 78 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + V R D T ++RI R P W S+I++D D +Y+ Sbjct: 79 ETYKIYPTSVPRSDELTKRGYTRIVRKRVGPDWTPTPSMIERDP------DLKYM----- 127 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 PG N + + + +H T + Sbjct: 128 -----------------------------PPGPDNPLGTHAMYLSWP-AYLIHGTHDTRK 157 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 R + GC+ + N + L + P ++ I Sbjct: 158 IG---RQSSDGCIGLYN--HMIEALYQIAPIGTQVRI 189 >gi|182437776|ref|YP_001825495.1| hypothetical protein SGR_3983 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466292|dbj|BAG20812.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 205 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + GGW + G S +V ++ + G + ++ + AVK F Sbjct: 68 RGVDLSGGWSRID-----PGASGATVVVIQHLMNQRG---HGLAVDGSYGSLSVGAVKRF 119 Query: 146 QMRHGLDPSGMVDSSTL 162 Q GL G V +T Sbjct: 120 QRSAGLAADGQVGPATW 136 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 K + + G WP L L G S V+ L+ L G + F Sbjct: 117 KRFQRSAGLAADGQVGPATWPVLVY-TLRQGASGSPVRALQTALNRRG---ARLAVDGGF 172 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + SAV+ +Q + L G T A+ Sbjct: 173 GSVTTSAVRAYQSGNRLVTDGEAGPVTWRALT 204 >gi|256368603|ref|YP_003106109.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|255998761|gb|ACU47160.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] Length = 206 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++P + Sbjct: 33 YPSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 93 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 186 >gi|16079643|ref|NP_390467.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310519|ref|ZP_03592366.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221314843|ref|ZP_03596648.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319764|ref|ZP_03601058.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324043|ref|ZP_03605337.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. SMY] gi|321312085|ref|YP_004204372.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|113674|sp|P24808|CWLA_BACSU RecName: Full=N-acetylmuramoyl-L-alanine amidase CwlA; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|39874|emb|CAA35788.1| hydrolase [Bacillus subtilis] gi|142802|gb|AAA62676.1| N-Acetylmuramoyl-L-alanine amidase [Bacillus subtilis] gi|1217875|dbj|BAA06960.1| cell wall lytic enzyme (autolysin) [Bacillus subtilis] gi|1303768|dbj|BAA12424.1| CwlA [Bacillus subtilis] gi|2635035|emb|CAB14531.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis subsp. subtilis str. 168] gi|320018359|gb|ADV93345.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis BSn5] Length = 272 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP V ++++ L + G+ + A++ FQ Sbjct: 191 ALPSGIFKVKSPMMRGEKVTQIQKALAALYFYPDKGAKNNGIDGVYGPKTADAIRRFQSM 250 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ T + Sbjct: 251 YGLTQDGIYGPKTKAKLEA 269 >gi|209524668|ref|ZP_03273215.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209494812|gb|EDZ95120.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 401 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L++RL G + + A+ FQ+ GL+ +G+V+ T +++ Sbjct: 71 DYDIIELQKRLQEKGYYL--GAIDGIYGEKTREAISNFQLSIGLESTGIVNQETWDSLLG 128 Query: 168 PVDL 171 Sbjct: 129 NSAA 132 >gi|206599573|ref|YP_002242012.1| gp29 [Mycobacterium phage Brujita] gi|206282722|gb|ACI06243.1| gp29 [Mycobacterium phage Brujita] gi|302858466|gb|ADL71213.1| gp29 [Mycobacterium phage island3] Length = 314 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + V+ L+ RL F E V+ FQ R GL G+ +TL A+ Sbjct: 189 TGERVKALQARLNRDYPAYSDLDEDGEFGPLTEQVVREFQRRSGLLDDGIAGPATLAALG 248 Query: 167 VPVDL 171 + Sbjct: 249 LSFQP 253 >gi|114705545|ref|ZP_01438448.1| putative signal peptide protein [Fulvimarina pelagi HTCC2506] gi|114538391|gb|EAU41512.1| putative signal peptide protein [Fulvimarina pelagi HTCC2506] Length = 240 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 160 STLEAMNVPVDLRIRQLQV-----NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 T E+ + P +R +Q R +E + ++V+ L VENG Sbjct: 36 GTWESTDDPRVMRRTMMQQRRPSAAFNRANVNIETRERPGTIIVDTHRRYLYFVENGGRA 95 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 R V VG+ ++ R P W+ P+ ++ ++ Sbjct: 96 TRYGVGVGKEG-FGWSGQMKVGRKAEWPDWIPPKEMVIRE-------------------- 134 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPIL 331 + R G N + + + R++ + +H T +P Sbjct: 135 ---------------RRKGHILPARMAGGPKNPLGARALYLYRGGRDSLFRIHGTNQPWT 179 Query: 332 FNNVVRFETSGCVRVRN 348 +SGC+R+ N Sbjct: 180 IGQR---LSSGCIRMMN 193 >gi|229161629|ref|ZP_04289609.1| Spore cortex-lytic enzyme [Bacillus cereus R309803] gi|228621874|gb|EEK78720.1| Spore cortex-lytic enzyme [Bacillus cereus R309803] Length = 259 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQQKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGTKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|154251395|ref|YP_001412219.1| peptidoglycan-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154155345|gb|ABS62562.1| Peptidoglycan-binding domain 1 protein [Parvibaculum lavamentivorans DS-1] Length = 310 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 ++ R L + V+ L L+ G + FD +E A+K FQ +GL Sbjct: 239 DVTTRNLRLTSPRMTGNDVRALEAALVKEGY---AINCDGVFDEGLEKALKSFQQDYGLI 295 Query: 153 PSGMVDSSTL 162 G+ +T Sbjct: 296 ADGVAGPATR 305 >gi|256390233|ref|YP_003111797.1| peptidoglycan-binding protein [Catenulispora acidiphila DSM 44928] gi|256356459|gb|ACU69956.1| Peptidoglycan-binding domain 1 protein [Catenulispora acidiphila DSM 44928] Length = 410 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 49/146 (33%), Gaps = 7/146 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RPL +G + V+ L G + G S + A +AVK +Q GLD +G VD Sbjct: 151 RPLTVGTTGADVKEFETDLAALGYTGFTPGTS--YTADTAAAVKKWQAAVGLDQTGNVDP 208 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + +A +RI L +L LV + L + G V V Sbjct: 209 A--QAAVTSGPIRIAALHTSLGSAAGGQVLDDTGTTKLVTVA---LAVAKEGLVKAGDKV 263 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWV 245 V D T + Sbjct: 264 TVTLPDGSTTAGTVTGVGKVATVPST 289 >gi|226305739|ref|YP_002765699.1| hypothetical protein RER_22520 [Rhodococcus erythropolis PR4] gi|226184856|dbj|BAH32960.1| hypothetical protein RER_22520 [Rhodococcus erythropolis PR4] Length = 262 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 18/150 (12%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 GL+L E I S ++ + + A D S + +A ++ Sbjct: 125 GLNLFENNIFWGAD-----WSRADEMHYQLNGGTASGDGA--------SAKLVAFAQRLE 171 Query: 83 AFYQDILSRGGWPELPIRP-----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 Y +L+ P + +P L GN+ V L+ L + F Sbjct: 172 GGYLGLLAGTAVPPIIPKPVARPTLRRGNTGGDVTYLQGLLNRMFASYSKLVVDGDFGPA 231 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ES V+ Q R GL G+V S T AM V Sbjct: 232 TESVVREVQRRSGLAVDGIVGSDTWRAMGV 261 >gi|126729787|ref|ZP_01745600.1| hypothetical protein SSE37_04915 [Sagittula stellata E-37] gi|126709906|gb|EBA08959.1| hypothetical protein SSE37_04915 [Sagittula stellata E-37] Length = 335 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 2/108 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V+ L+E L FD +A+ FQ +GL + + Sbjct: 174 VLRFGDRGADVRVLQEDLAGLRYFA--GRRDGRFDTLTRAALLAFQADNGLATDAVAGAL 231 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 T A+ +R + +R + K G + L AV Sbjct: 232 TWAALARAQPRPLRDIAPADLRAEGSSTMKGGDAAEVALTGGGLLAAV 279 >gi|118590650|ref|ZP_01548051.1| hypothetical protein SIAM614_05768 [Stappia aggregata IAM 12614] gi|118436626|gb|EAV43266.1| hypothetical protein SIAM614_05768 [Stappia aggregata IAM 12614] Length = 290 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 24/179 (13%), Positives = 51/179 (28%), Gaps = 44/179 (24%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + RQ+ + + ++++ L V+N R V VG+ + Sbjct: 137 APQTRQIAPQFLPTIVNYDGPHKAGTIVIDTNERFLYLVQNDGTARRYGVGVGKPGFE-W 195 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 ++ R P W P + ++ Sbjct: 196 AGTHKVTRKAEWPDWRPPAEMRKRR----------------------------------- 220 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 P+ G N + + + +H + +P + +SGC+R+RN Sbjct: 221 ----PDLPTFMAGGPENPLGARAMYLG-STLYRIHGSNQPWTIGH---AVSSGCIRMRN 271 >gi|47569014|ref|ZP_00239704.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus G9241] gi|47554283|gb|EAL12644.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus G9241] Length = 259 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPPQDKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|329934815|ref|ZP_08284856.1| peptidoglycan-binding membrane protein [Streptomyces griseoaurantiacus M045] gi|329305637|gb|EGG49493.1| peptidoglycan-binding membrane protein [Streptomyces griseoaurantiacus M045] Length = 391 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 7/128 (5%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ-DILSRGGWPELPIRPLHLGNS 107 + A S + T + + + G L G+ Sbjct: 267 DTASATATASGGRTASSSATPSATRTARDAQATSEATRSKKPATGEDQHQDPPVLRRGDD 326 Query: 108 SVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDSSTLEA 164 V+ L+ RL L + +D VE+AV +Q G+ G+ +T Sbjct: 327 GPEVEELQRRLRQRLFYL---GTVDGTYDGDVETAVAAYQSARGITDDPRGVYGEATRAR 383 Query: 165 MNVPVDLR 172 + D Sbjct: 384 LESETDEP 391 >gi|194017081|ref|ZP_03055693.1| N-acetylmuramoyl-L-alanine amidase CwlA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] gi|194010949|gb|EDW20519.1| N-acetylmuramoyl-L-alanine amidase CwlA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] Length = 273 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 97 LPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRH 149 LP +V++++E + + G+ + +AVK FQ+ H Sbjct: 193 LPTGIFKVKAPLMKGDAVKQIQEAIAALYFYPDKGAKNNGIDGYYGPKTANAVKRFQLMH 252 Query: 150 GLDPSGMVDSSTLEAMNV 167 GL G+ T + Sbjct: 253 GLAADGIYGPKTKAKLEA 270 >gi|88807653|ref|ZP_01123165.1| hypothetical protein WH7805_13918 [Synechococcus sp. WH 7805] gi|88788867|gb|EAR20022.1| hypothetical protein WH7805_13918 [Synechococcus sp. WH 7805] Length = 151 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 51/174 (29%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++ +++ + + NG V +G TP ++ NP + +S Sbjct: 20 EDTHIHLDLRQRRISVIRNGHRIGPWPVAIGDPRTPTPTGVFQVENKRVNPQYESTKS-- 77 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 V G + + Sbjct: 78 ---------------------------GRVHPVT-----------------GPSSPLGHR 93 Query: 312 KIEF--YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI--IDLDVWLLKDTP 361 I F N +H TP P ++GCVR+ N L + TP Sbjct: 94 WIGFLRQGPNQFGIHGTPWPHWVKIRA-AVSNGCVRMLNAHVQKLYELVDVGTP 146 >gi|190572272|ref|YP_001970117.1| hypothetical protein Smlt0193 [Stenotrophomonas maltophilia K279a] gi|190010194|emb|CAQ43802.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 663 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 G S V++++E+L G + F ++AV+ Q +GL G Sbjct: 461 AELYKQGAHSEGVRKVQEQLGHLGYVGADGKPLVEDGRFGRNTDAAVRQLQKDNGLVADG 520 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMR-------------IKKLLEQKMGLRYVLVNIPA 202 +V + TLEA+ + R R L +N R ++ L R+ L + A Sbjct: 521 IVGAKTLEAIK---EARERPL-LNDERHPRNPLFIQASKGLELLPAGTFKDRHALESAAA 576 Query: 203 A 203 A Sbjct: 577 A 577 >gi|75812752|ref|YP_320369.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75705508|gb|ABA25180.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 171 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 9/81 (11%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDL---------DPSKGLSVAFDAYVESAVKLFQ 146 +L + L G+ +VQ L+ L +G L + F A SAV+ Q Sbjct: 72 DLTLPTLRQGDRGRNVQLLQRILQDNGFLGAAGVRLGNPRGAIIDGIFGAVTVSAVRDLQ 131 Query: 147 MRHGLDPSGMVDSSTLEAMNV 167 R+ + +G V+ +T E +++ Sbjct: 132 RRYRIPVTGRVNPTTWEVLDM 152 >gi|86356459|ref|YP_468351.1| hypothetical protein RHE_CH00813 [Rhizobium etli CFN 42] gi|86280561|gb|ABC89624.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 230 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 42/148 (28%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L VE R + VGR D +I R P W P + +++ Sbjct: 78 YLYLVEGNNRATRYGIGVGR-DGFGWSGIVKIGRKAEWPAWTPPAEMRRRE--------- 127 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNT 321 + + Q+ G+ N + + + R+ Sbjct: 128 --------------------------AAKGHIIPAYQEGGEDNPLGARAMYLYQGGRDTI 161 Query: 322 Y-MHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T +P + +SGC+R+ N Sbjct: 162 FRIHGTNQPWTIGLNM---SSGCIRMMN 186 >gi|20808900|ref|NP_624071.1| spore cortex-lytic enzyme prepeptide [Thermoanaerobacter tengcongensis MB4] gi|20517559|gb|AAM25675.1| spore cortex-lytic enzyme prepeptide [Thermoanaerobacter tengcongensis MB4] Length = 234 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G D + F AV+ FQ +GL +G+VD T A Sbjct: 40 GNTGSDVAKVQARLKAWGYYD--GPVDGFFGVKTWLAVRKFQAYNGLAVTGIVDDDTKVA 97 Query: 165 MNVPVDL 171 + Sbjct: 98 LGFTTTA 104 >gi|54307653|ref|YP_128673.1| putative general secretion pathway protein A [Photobacterium profundum SS9] gi|46912076|emb|CAG18871.1| putative general secretion pathway protein A [Photobacterium profundum SS9] Length = 556 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 7/126 (5%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW--PE 96 + S + A I+ E IA + + + W P Sbjct: 417 AMVTLQDSQQQTFYAVVYAVTAKRIELL---FGGERIAVKPEWLEQHWQGEYTLLWRPPH 473 Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + G V L ++L L ++ S FD V ++ FQ L G+ Sbjct: 474 GSKTTIRYGQQGPRVAWLNQQLNA--FLGVTQTRSDYFDQSVLEKLRRFQRSQDLAADGI 531 Query: 157 VDSSTL 162 TL Sbjct: 532 AGPLTL 537 >gi|304393047|ref|ZP_07374976.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294812|gb|EFL89183.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 182 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V+RL+E+L + G F + AV FQ +GL G+ T Sbjct: 4 LKKGMKGAPVKRLQEKLGV--------GADGDFGPGTQKAVMDFQKANGLSVDGIAGPDT 55 Query: 162 LEAMN 166 AM Sbjct: 56 FTAMG 60 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 11/95 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V++L+ L F + + AV +Q +GL GM ST Sbjct: 67 LRVGSRGEQVKKLQAAL--------GASADGIFGSGTKQAVMDYQKANGLAVDGMAGPST 118 Query: 162 LE---AMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 L A + + + ++ + + Sbjct: 119 LATMDAFDTMDASVVSRAEITPEEEAAFDGEDLPE 153 >gi|240169597|ref|ZP_04748256.1| putative toxin subunit [Mycobacterium kansasii ATCC 12478] Length = 3193 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 59/201 (29%), Gaps = 18/201 (8%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L L ++ V L+ L G F A +AV FQ GL +G V Sbjct: 255 PRALRLNATNKDVPVLQRTLAFLGHAVNETEFKDTRFGASTRAAVLAFQKSAGLPETGHV 314 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 D TL A+N V RI+ + + + + L G + Sbjct: 315 DRGTLAALNQAVIRANPAAAATTARIRGTVRDT---AWAGIKGASVELRTRAIGG----A 367 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V++G+ F+ + P ++ L Y + + Sbjct: 368 GVVLGQRATLANGF--------FDLPYTAPVDAATGKPVSPLLLTVTYRDPAGAEI--GR 417 Query: 278 GKEVFVEEVDWNSPEPPNFIF 298 + W + + + Sbjct: 418 KNLTNPPPMAWANFTQGDRPY 438 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 20/41 (48%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 ++A++ Q R GL +G +D T + ++ + R+ Sbjct: 199 GPSTQAAIRTLQARFGLPATGTMDPETFDRVHAAAASKPRK 239 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 110 SVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ L + L G + + A +AVK+ Q R GLD +G + ST++A+ V Sbjct: 26 RVELLHQALGTLGLPVDAGEVDEAKLGKTTSAAVKVLQERAGLDQTGKFNKSTVDALKVH 85 Query: 169 VDLRI 173 V+ ++ Sbjct: 86 VEDQL 90 >gi|150376490|ref|YP_001313086.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150031037|gb|ABR63153.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 243 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 61/189 (32%), Gaps = 42/189 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + RQ+ +R + V+V+ P L VE G +R V +GR Sbjct: 69 PAVPYRQMDPKYLRQRVPDPTGEPAGTVVVDTPGRYLYLVEPGGTAMRYGVGIGREGFA- 127 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I+ P W P +I + E ++ Sbjct: 128 WEGDGIIHWRQAWPRWKPPAEMIARR----------------------------PELAEY 159 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVR 345 + PG N + + + F + + +H TPE +SGCVR Sbjct: 160 SVENGGM-----APGIKNPLGARALYIFQNGRDTLYRLHGTPEWNSIGK---ATSSGCVR 211 Query: 346 V--RNIIDL 352 + +++IDL Sbjct: 212 LVNQDVIDL 220 >gi|218663442|ref|ZP_03519372.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium etli IE4771] Length = 204 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 53/182 (29%), Gaps = 43/182 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E ++++ PA V +R V VGR Sbjct: 42 QVPIDKIKPELRRQEVAYESSHAPGTIVIDTPARRAYYVLGDNRAMRYGVGVGREG-LAF 100 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 ++ I R P W ++ +++ Sbjct: 101 AGNAYIGRKAEWPSWTPTENMQRRE----------------------------------- 125 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + + + +H T +P +SGC+R+ Sbjct: 126 -ERYRRLAGGMPGGPNNPLGARAMYLYRSGNDTHFRIHGTNQPESIG---LAMSSGCIRM 181 Query: 347 RN 348 N Sbjct: 182 MN 183 >gi|149198883|ref|ZP_01875925.1| tonB-dependent receptor protein [Lentisphaera araneosa HTCC2155] gi|149138081|gb|EDM26492.1| tonB-dependent receptor protein [Lentisphaera araneosa HTCC2155] Length = 325 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 63/214 (29%), Gaps = 66/214 (30%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T+ A+ + + I +++ ++ + ++ + +L+ + +GK+ + Sbjct: 171 TIRAVQISNKIPIESSVIHVNQVLTFFGGQWEIKASKSH---YALQLLLDGKLFRFYNIG 227 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 +G+ D +TP I+ P W Sbjct: 228 IGK-DNRTPFGEFFISGKKREPSW------------------------------------ 250 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF-----YSRNNTYMHDTPEPILFNNV 335 + F N + + + S +H T EP Sbjct: 251 -------------KGYPF---GHPENVLGTRWMRLTKISDGSNEGYGIHGTSEPESIGT- 293 Query: 336 VRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 + GC+R+RN + +L ++ + + Sbjct: 294 --ASSLGCIRMRNEDVEELFNFIPDNKIKVTIED 325 >gi|119900262|ref|YP_935475.1| hypothetical protein azo3973 [Azoarcus sp. BH72] gi|119672675|emb|CAL96589.1| hypothetical protein azo3973 [Azoarcus sp. BH72] Length = 267 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G S +V+RL+ RL+ G + F E+AV +Q GL P G+ Sbjct: 3 VLKRGASGAAVERLQRRLLECGF--DPGLIDGLFGGGSEAAVLAYQWSEGLLPDGIAGPR 60 Query: 161 TLEAMN 166 TL+++ Sbjct: 61 TLKSLG 66 >gi|257056977|ref|YP_003134809.1| putative peptidoglycan-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586849|gb|ACU97982.1| putative peptidoglycan-binding domain-containing protein [Saccharomonospora viridis DSM 43017] Length = 246 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G + V+ L+ R+ + + + A E+AVK FQ +GL G+ Sbjct: 40 RTLSRGATGSDVRELQIRVAGWVASGENLVIDGVYGAATEAAVKRFQSGYGLAADGVAGP 99 Query: 160 STLEAM 165 +T + Sbjct: 100 NTFNKI 105 >gi|209548411|ref|YP_002280328.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534167|gb|ACI54102.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + Q+ R + L ++V+ P+ L V+ + +R V +GR Sbjct: 79 PAIPYEQIDPRYYRQRVLDPTGQPPGTIVVDTPSRFLYLVQGDGMAMRYGVGIGREGFA- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + E V + Sbjct: 138 WQGSGVIQWRQKWPRWKPPNEMVARQ----------------------------PELVKY 169 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVR 345 + +PG N + + + F + + Y +H P+ +SGCVR Sbjct: 170 SIENGGM-----EPGLKNPLGARALYIFSNGEDTLYRLHGNPDWRSIGK---AVSSGCVR 221 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 222 LMNQDIIDLYDRVPTKAP 239 >gi|308172492|ref|YP_003919197.1| N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] gi|307605356|emb|CBI41727.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus amyloliquefaciens DSM 7] Length = 323 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMR 148 LP +V++++ L G+ A+ A +AVK FQ Sbjct: 242 RLPAGIFKVTSPLTRGEAVKQIQTALAALHYYPDKSAKNFGIDSAYGAKTANAVKRFQSM 301 Query: 149 HGLDPSGMVDSSTLEAMN 166 +GL G+ T + Sbjct: 302 YGLPADGIYGPKTKAKLE 319 >gi|256826841|ref|YP_003150800.1| putative peptidoglycan-binding domain-containing protein [Cryptobacterium curtum DSM 15641] gi|256582984|gb|ACU94118.1| putative peptidoglycan-binding domain-containing protein [Cryptobacterium curtum DSM 15641] Length = 303 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 13/91 (14%) Query: 86 QDILSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFD 135 +D + W L LG+ V L++ L G + F Sbjct: 58 RDEVDDKVWALLLDATFRLGDRTLYLRMPYFHGNDVAELQQALDALGF---ATSTDGMFG 114 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 A+ E A++LFQM GL G+ S T A+ Sbjct: 115 AHTELALRLFQMNMGLPSDGIAGSFTFRAIA 145 Score = 44.3 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + ++S +VQ ++E+L G L +K ++ FD +A+K F G P VD Sbjct: 5 ETIRKHDASAAVQDVQEKLASLGYL-GTKQVTGTFDDATIAALKAFCKDSGFPPRDEVDD 63 Query: 160 STLE 163 Sbjct: 64 KVWA 67 >gi|257068140|ref|YP_003154395.1| cell wall-associated hydrolase, invasion-associated protein [Brachybacterium faecium DSM 4810] gi|256558958|gb|ACU84805.1| cell wall-associated hydrolase, invasion-associated protein [Brachybacterium faecium DSM 4810] Length = 280 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G+ +VQ L+ D + F SAVK +Q GL G+V Sbjct: 84 STQKLRWGSRGGAVQELQ---SALNDHGAGLAVDGVFGPRTHSAVKSYQSSQGLQVDGVV 140 Query: 158 DSSTLEAMN 166 T A+N Sbjct: 141 GPKTRAALN 149 >gi|186682191|ref|YP_001865387.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464643|gb|ACC80444.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 135 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G++ +V+ + L G + ++ FD SAV FQ GL G++ Sbjct: 72 VLTVGSTGEAVKTAQNALKQQGFY--TANVNGVFDNKTRSAVIKFQKSKGLRADGIIGRR 129 Query: 161 TLEAMN 166 TL ++ Sbjct: 130 TLASLK 135 >gi|322384552|ref|ZP_08058232.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150607|gb|EFX44084.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 216 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L++G S V L+ERL G G++ + + AV+ FQ +GL +G D Sbjct: 29 AMTLNIGTQSEHVLNLQERLSSLGYFKK--GITGYYGKITKEAVRDFQKAYGLSVTGSAD 86 Query: 159 SSTLE---AMNVPVDLRIRQLQ 177 S+TL M + + QL Sbjct: 87 SATLAKLNQMAGSKQITLDQLA 108 >gi|192292497|ref|YP_001993102.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] gi|192286246|gb|ACF02627.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 421 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 58/192 (30%), Gaps = 48/192 (25%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 P + QL NL R + K ++V+ L V +R V VGR D Sbjct: 215 EQPDADQTVQLPPNLRRQEVDFATKEPAGTIVVDTANTHLYYVLGNGRAIRYGVRVGR-D 273 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 T +I+R P W P +I++ Sbjct: 274 GFTWNGVQKISRKAEWPDWHPPAEMIERQ------------------------------- 302 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 P G N M + + S Y +H T +P F +SGC+ Sbjct: 303 --------PYLPRFMAGGPGNPMGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCI 349 Query: 345 RV--RNIIDLDV 354 + ++ DL Sbjct: 350 GMLNDDVSDLFE 361 >gi|325919153|ref|ZP_08181210.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325550360|gb|EGD21157.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 606 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G VQ +++ L G D F AV FQ +HGL P G+V Sbjct: 409 VLKHGARGGEVQSMQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVIAFQKQHGLQPDGVV 468 Query: 158 DSSTLEAMNVPV 169 +T A++ Sbjct: 469 GRNTQAALSALP 480 >gi|163940501|ref|YP_001645385.1| spore cortex-lytic enzyme SleB [Bacillus weihenstephanensis KBAB4] gi|229012007|ref|ZP_04169186.1| Spore cortex-lytic enzyme [Bacillus mycoides DSM 2048] gi|229133643|ref|ZP_04262469.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST196] gi|163862698|gb|ABY43757.1| Spore cortex-lytic enzyme SleB [Bacillus weihenstephanensis KBAB4] gi|228649678|gb|EEL05687.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST196] gi|228749095|gb|EEL98941.1| Spore cortex-lytic enzyme [Bacillus mycoides DSM 2048] Length = 259 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQTRLKYNGFY--TGKVDGVFGWGTYWALRNFQQKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKDTTTNKGNSGGGKQENKPPKSTGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|229030433|ref|ZP_04186473.1| Spore cortex-lytic enzyme [Bacillus cereus AH1271] gi|228730872|gb|EEL81812.1| Spore cortex-lytic enzyme [Bacillus cereus AH1271] Length = 259 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTSNKGNSGGTAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|159045946|ref|YP_001534740.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|157913706|gb|ABV95139.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] Length = 182 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 46/210 (21%) Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + +TL + R QL L ++V A L V+ + L Sbjct: 9 TMGLATLA--TPAIAQRKFQLDPRFEPTVVPLRYPFQAGQIIVVPQAHYLYWVQPEQKAL 66 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 R V VG+ + ++ I R P W +I+++ + Sbjct: 67 RYGVGVGKAGLE-FKGNATIKRKAVWPNWRPTDEMIEREP-------------HKYERFA 112 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILF 332 + G N + + + + + + +H T EP Sbjct: 113 DG----------------------VPGGPNNPLGARALYLYQGNVDTYFRIHGTTEPWSI 150 Query: 333 NNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 R ++GC+R+ ++IDL + + T Sbjct: 151 G---RSVSNGCIRMVNEHVIDLYDRVPRGT 177 >gi|330826784|ref|YP_004390087.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] gi|329312156|gb|AEB86571.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] Length = 342 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 1/93 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PE + L S V+ L+ RL + L + + V+ FQ HGL + Sbjct: 44 PEPLAQELRHRMESPLVRELQVRLRHAKYLALY-DVDDRYGLKTRETVRKFQKDHGLRET 102 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G+VD +T + + N Sbjct: 103 GVVDQATWDRLLPRSHKPTAAELGNTDVGPWFT 135 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 7/147 (4%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G + ++ L+ RL +G + F + A+ F+ R GL S ++D T Sbjct: 137 PGQAGY-IRELQHRLRQAGHY--QGAIDGEFHGATQQAISGFRARVGLPASHVMDERTWA 193 Query: 164 A-MNVPVDLRIRQLQVNLMRIKKLLEQKMG---LRYVLVNIPAASLEAVENGKVGLRSTV 219 + + R QL R V ++ + V +G+ Sbjct: 194 RLIAKTRNPRYAQLFDAPPASTLAQALDPRCATGRVVCISREQKRMSLVVDGRTLFTREA 253 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVI 246 R ++ RI + + I Sbjct: 254 RFARPGWESDKGEFRIWYMNSDTVSTI 280 >gi|260431451|ref|ZP_05785422.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415279|gb|EEX08538.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 188 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 8/79 (10%) Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPI 330 + + + V + + ++ Q G N + + + F + +TY +H T +P Sbjct: 97 WRPTNEMIERDPVAYAKFKDNDY--VQPGGGDNPLGARALYLFQNGVDTYFRIHGTTQPQ 154 Query: 331 LFNNVVRFETSGCVRVRNI 349 R ++GC+R+ N Sbjct: 155 TIG---RAVSNGCIRMLNA 170 >gi|225570400|ref|ZP_03779425.1| hypothetical protein CLOHYLEM_06500 [Clostridium hylemonae DSM 15053] gi|225160771|gb|EEG73390.1| hypothetical protein CLOHYLEM_06500 [Clostridium hylemonae DSM 15053] Length = 421 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G S V +++E+L +I+G + E+AV+ FQ GL + Sbjct: 337 PGYNLEIGASGDKVLQMQEQLNVIAGAYPAIPKITADGVYGPATEAAVRKFQSVFGLPET 396 Query: 155 GMVDSSTLEAMN 166 G+VD T ++ Sbjct: 397 GIVDYRTWYKIS 408 >gi|294500376|ref|YP_003564076.1| hypothetical protein BMQ_3629 [Bacillus megaterium QM B1551] gi|294350313|gb|ADE70642.1| conserved hypothetical protein [Bacillus megaterium QM B1551] Length = 186 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 15/108 (13%) Query: 255 MMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDW----NSPEPPNFIFRQDP--GKIN 306 ++ Y + I ++D GK V + N + + P N Sbjct: 40 IINKYYNKLAYFHNGYIEIVDPVATGKTWVKTPVGFFKVVNKIKNRPYYTGHIPAGNPRN 99 Query: 307 AMASTKIEFY----SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + + + +H + + GC R+ N Sbjct: 100 PLGKRWLGINANGTYGDTYGIHGNNNESSIGK---YVSQGCGRMHNAD 144 >gi|257142668|ref|ZP_05590930.1| bacteriophage-acquired protein [Burkholderia thailandensis E264] Length = 270 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q L G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAASLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +L R Sbjct: 61 YRVLASGQRDPKHLTDADLAR 81 >gi|154686370|ref|YP_001421531.1| CtpA [Bacillus amyloliquefaciens FZB42] gi|154352221|gb|ABS74300.1| CtpA [Bacillus amyloliquefaciens FZB42] Length = 467 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+S +V ++ L G S ++ +D E AVK FQ + L +G++ Sbjct: 376 AKKTYKYGDSGTTVTNAQKMLKALGY---SVKVNGTYDKAFEQAVKQFQAKEKLKQTGII 432 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIK 184 T + + QL N ++K Sbjct: 433 TGDTTAKLMTDLQK---QLADNDTQMK 456 >gi|86356949|ref|YP_468841.1| hypothetical protein RHE_CH01309 [Rhizobium etli CFN 42] gi|86281051|gb|ABC90114.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 204 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 45/190 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E ++++ PA V G +R V VGR Sbjct: 42 QVPIDKIKPELRRQEVAYESAHAPGTIVIDTPARRAYYVLGGNRAMRYGVGVGREG-LAF 100 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 ++ I R P W ++ +++ Sbjct: 101 AGNAYIGRKAEWPSWTPTENMQRRE----------------------------------- 125 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + Y + +H T +P +SGC+R+ Sbjct: 126 -ERYRRLAGGMPGGPNNPLGARAMYLYRGGSDTHFRIHGTNQPESIG---LAMSSGCIRM 181 Query: 347 --RNIIDLDV 354 ++IDL Sbjct: 182 MNHDVIDLYE 191 >gi|304317987|ref|YP_003853132.1| carboxyl-terminal protease [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779489|gb|ADL70048.1| carboxyl-terminal protease [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 455 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + + G++ V+ L+ L + G + F A+ FQ G+ +G+ Sbjct: 366 VYTKDIKKGDTGNDVKLLQSYLSLLGYYKGEP--NGYFGNDTYDAIVSFQKYAGIPATGV 423 Query: 157 VDSSTLEAMN 166 +D T +A++ Sbjct: 424 LDRGTTDALS 433 >gi|328880763|emb|CCA54002.1| hypothetical protein SVEN_0715 [Streptomyces venezuelae ATCC 10712] Length = 130 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG----LSVAFDAYVESAVKLFQMRHGLD 152 +P G+S + V L+E + G + F A +SAV+ FQ HGL Sbjct: 55 IPRYDYSQGDSDICVAGLQELVARFGLTSWEQSGGNFTDGVFGARTDSAVRRFQSNHGLA 114 Query: 153 PSGMVDSSTLEAMNV 167 P G+V T E + Sbjct: 115 PDGIVGPRTWEKLVT 129 >gi|153938990|ref|YP_001392530.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. Langeland] gi|152934886|gb|ABS40384.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. Langeland] gi|295320516|gb|ADG00894.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. 230613] Length = 231 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 13/89 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + ++ + +H T P Sbjct: 68 ATGKSSTPSPIGTWKIINKGTW-------GSSFGGRWMGLNVPWGKYGIHGTNAPNSIGW 120 Query: 335 VVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + GC+R+ +N+ +L DTP Sbjct: 121 SS---SHGCIRMKNKNVAELYKITPLDTP 146 Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G V +++ L + + ++S V FQ + + S ++S Sbjct: 162 RPIEPGMRGSDVYEVQKLLKEKKYY--NGEPDGIYGESMKSVVHKFQEDNNIPLSNTINS 219 Query: 160 STLEAMNV 167 S + + V Sbjct: 220 SFYKKLGV 227 >gi|194363931|ref|YP_002026541.1| peptidoglycan-binding domain 1 protein [Stenotrophomonas maltophilia R551-3] gi|194346735|gb|ACF49858.1| Peptidoglycan-binding domain 1 protein [Stenotrophomonas maltophilia R551-3] Length = 665 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 G S V++++E+L G + F ++AV+ Q +GL G Sbjct: 463 AELYKQGAHSEGVRKVQEQLGHLGYVGADGKPLVEDGRFGRNTDAAVRQLQKDNGLVVDG 522 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMR-------------IKKLLEQKMGLRYVLVNIPA 202 +V + TLEA+ D R R L +N R ++ L R+ L + A Sbjct: 523 IVGAKTLEAIK---DARERPL-LNDERHPRNPLFIQASKGLELLPAGTFKDRHTLESAAA 578 Query: 203 A 203 A Sbjct: 579 A 579 >gi|159046140|ref|YP_001541812.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|159046475|ref|YP_001542145.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|157913899|gb|ABV95331.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|157914234|gb|ABV95664.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] Length = 221 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 42/170 (24%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L+ + L + + V+ A L +E G +R V + + D P I R + Sbjct: 60 LLPQRVLANDGLRPGDIHVDAIARYLYHIEEGGTAMRYGVAIAKGDLYEP-GTYTIRRKV 118 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P+W +S+I+ +DP+ + F Sbjct: 119 EWPHWTPTQSMIE--------RDPEAYER---------------------------FADG 143 Query: 300 QDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV 346 +PG NA+ S + F +TY +H TP P R +SGCVR+ Sbjct: 144 MEPGPNNALGSRALYLFVGDRDTYLRIHGTPSPRSIG--GRA-SSGCVRM 190 >gi|158422581|ref|YP_001523873.1| ErfK/YbiS/YcfS/YnhG precursor [Azorhizobium caulinodans ORS 571] gi|158329470|dbj|BAF86955.1| ErfK/YbiS/YcfS/YnhG precursor [Azorhizobium caulinodans ORS 571] Length = 222 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 50/187 (26%), Gaps = 46/187 (24%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 VP + QL R ++++ L VE +R + VGR Sbjct: 59 GLVPPEDDEAQLDPAYRRQPVYFRTTEAPGTIIISTSDRFLYLVEGNNRAMRYGIGVGRD 118 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 Q +I+R P W P +IQ+ Sbjct: 119 GFQ-WQGLEKISRKAEWPDWTPPAEMIQRQ------------------------------ 147 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGC 343 P G N M + + Y +H T +P +SGC Sbjct: 148 ---------PYLPRFMAGGPGNPMGARALYL--GQTVYRIHGTNQPETIGY---AVSSGC 193 Query: 344 VRVRNII 350 R+ N Sbjct: 194 FRLVNSD 200 >gi|75910618|ref|YP_324914.1| glycoside hydrolase family protein [Anabaena variabilis ATCC 29413] gi|75704343|gb|ABA24019.1| Glycoside hydrolase, family 24 [Anabaena variabilis ATCC 29413] Length = 243 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V L+E L+ + F E+AVK FQ + + P G+V+ Sbjct: 4 TETLRKGSKGSEVSELQEILVKLKF--DPGRIDGDFGNKTEAAVKQFQQKQNITPDGVVE 61 Query: 159 SSTLEAMNVPVDLRIRQLQV 178 +T A+N + +I ++ Sbjct: 62 INTRNALNKAIQRQIEIAKL 81 >gi|321312058|ref|YP_004204345.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|320018332|gb|ADV93318.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] Length = 250 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + ++ +L++ L + G+ + +AVK FQ+ Sbjct: 169 PLPSGVIKLTSPYRKGTNILQLQKALAALHFYPDKGAKNNGIDGVYGPKTANAVKRFQLM 228 Query: 149 HGLDPSGMVDSSTLEAMN 166 +GL G+ T + Sbjct: 229 NGLTADGIYGPKTKAKLK 246 >gi|294497318|ref|YP_003561018.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium QM B1551] gi|294347255|gb|ADE67584.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium QM B1551] Length = 256 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 42/168 (25%), Gaps = 59/168 (35%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +++N +L + GK+ V GR TP I + N + Sbjct: 32 IIINKSTNTLAFYDRGKLVRTFKVATGRQMSYTPEGTFSIVNKIKNRPYYK--------- 82 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 ++ + N + + Sbjct: 83 ---------------------------------DNIRGGD--------PRNPLGDRWLGL 101 Query: 316 YSRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +R +H P + +SGC+R+ + + WL Sbjct: 102 NARGTYGTTYAIHGNNNPSSIGT---YASSGCIRMYD--EEVRWLFDR 144 >gi|21233610|ref|NP_639527.1| hypothetical protein XCC4193 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770575|ref|YP_245337.1| hypothetical protein XC_4282 [Xanthomonas campestris pv. campestris str. 8004] gi|188993806|ref|YP_001905816.1| hypothetical protein xccb100_4411 [Xanthomonas campestris pv. campestris str. B100] gi|21115476|gb|AAM43409.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575907|gb|AAY51317.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167735566|emb|CAP53784.1| hypothetical protein xcc-b100_4411 [Xanthomonas campestris pv. campestris] Length = 449 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 7/99 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGL 151 P + + +G SS VQ++++ L G + +++AV +Q HGL Sbjct: 217 PFVDDGTIRIGGSSEMVQKVQQTLNAEGYRGADNQPLQEDGVYRLSMQAAVINYQQAHGL 276 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 +G +D +TL+ + R ++N + Sbjct: 277 SQTGDIDPATLQQI----APRTFPPELNREDHNATPTYR 311 >gi|257053977|ref|YP_003131810.1| Peptidoglycan-binding domain 1 protein [Halorhabdus utahensis DSM 12940] gi|256692740|gb|ACV13077.1| Peptidoglycan-binding domain 1 protein [Halorhabdus utahensis DSM 12940] Length = 864 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG +VQ+L+E L G + + AV FQ GL+P+G V T Sbjct: 3 LTLGADGEAVQQLQELLAERGY--DVGEIDGEYGRRTRDAVASFQREQGLEPTGSVGPDT 60 Query: 162 LEAMNVPVD 170 E +++ VD Sbjct: 61 AEELDLDVD 69 >gi|295706084|ref|YP_003599159.1| endopeptidase [Bacillus megaterium DSM 319] gi|294803743|gb|ADF40809.1| Endopeptidase [Bacillus megaterium DSM 319] Length = 225 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V++L++ L G + SAVK FQ ++G+ G Sbjct: 25 ALGDQTLRQGMNHQDVKQLQQTLKNKGYFKGNTTTYFG--TVTTSAVKSFQRKNGIAADG 82 Query: 156 MVDSSTLEAMNVPVD 170 +V T + V Sbjct: 83 IVGKGTYAKLGVSAK 97 >gi|226502831|ref|NP_001142095.1| hypothetical protein LOC100274259 [Zea mays] gi|194707100|gb|ACF87634.1| unknown [Zea mays] Length = 370 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 HLG + ++++ L G L P S FDA +E A+K++Q GL +G++D+S Sbjct: 56 HLGEQQQGLAKVKDYLSRFGYLPPESSGSFNDVFDADLEEAIKVYQRNFGLGITGVMDAS 115 Query: 161 TLEAMNVP 168 T+ M P Sbjct: 116 TVAQMMAP 123 >gi|295798113|emb|CAX68938.1| ErfK/YbiS/YcfS/YnhG family protein [uncultured bacterium] Length = 267 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 54/174 (31%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 G+ + V+ L ++ + V G TP+ I + +P W Sbjct: 141 NRGVFKIKVDKSENKLRLYQDDALIKTYRVCTGEK-NSTPVGTFTIETKLEDPTW----- 194 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 G + + N + Sbjct: 195 ------------------------YKSPGVAIPPKT------------------PENILG 212 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + F + +H T P +SGC+R+ +++ +L + T Sbjct: 213 TRWMGFSLA-SYGIHGTTLPETIGT---QASSGCIRMLNKDVEELYSIVPLKTK 262 >gi|138895936|ref|YP_001126389.1| protein ErfK/SrfK [Geobacillus thermodenitrificans NG80-2] gi|196248827|ref|ZP_03147527.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. G11MC16] gi|134267449|gb|ABO67644.1| Protein ErfK/SrfK precursor [Geobacillus thermodenitrificans NG80-2] gi|196211703|gb|EDY06462.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. G11MC16] Length = 168 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 11/86 (12%) Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD--PG--KINAMASTKIEFY----SRNNTY 322 + + E + + + N +R+ PG N + + I F Sbjct: 50 YPVATGMNAGLTPEGMFTVTVKAENPYYRKKGIPGGAPNNPLGTRWIGFNARGTDGRIYG 109 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRN 348 +H T P + + GCVR+ N Sbjct: 110 VHGTNNPASIG---GYVSQGCVRMHN 132 >gi|289642266|ref|ZP_06474415.1| NLP/P60 protein [Frankia symbiont of Datisca glomerata] gi|289507901|gb|EFD28851.1| NLP/P60 protein [Frankia symbiont of Datisca glomerata] Length = 360 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 50/176 (28%), Gaps = 25/176 (14%) Query: 91 RGGW------PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 G W E P R L LG+ V RL+ RL I F V+ Sbjct: 125 DGEWESSDGRQEFPRRSLRLGSQGDPVARLQIRLGIF--------ADGRFGPRTARGVRT 176 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ GL +V T A+ + + LL + + + A + Sbjct: 177 FQSGAGLTIDAVVGPRTWGALFGASAAPTVSAPASAQPVPALLTTPATAQPAVASTAALT 236 Query: 205 LEAV-----ENGKVGLRSTVIVGRVDRQTPIL------HSRINRIMFNPYWVIPRS 249 + V + +G+ R + + +PR+ Sbjct: 237 VAPVGASTSVAAAAFAVAQQQIGKPYRYGAAGPNDFDCSGLVKYVYAQVGASVPRT 292 >gi|255525876|ref|ZP_05392804.1| SpoIID/LytB domain protein [Clostridium carboxidivorans P7] gi|296185117|ref|ZP_06853527.1| SpoIID/LytB domain protein [Clostridium carboxidivorans P7] gi|255510440|gb|EET86752.1| SpoIID/LytB domain protein [Clostridium carboxidivorans P7] gi|296049951|gb|EFG89375.1| SpoIID/LytB domain protein [Clostridium carboxidivorans P7] Length = 858 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + PL+LG + V L+ LI G S F + +SAV FQ G+ +G Sbjct: 777 IAALPLNLGMTGSDVISLQNALIKLGYNISSAT--GYFGSQTKSAVIAFQTSAGIPATGT 834 Query: 157 VDSSTLEAMN 166 V + T ++N Sbjct: 835 VGTWTYSSLN 844 >gi|15895098|ref|NP_348447.1| fused Zn-dependent amidase/peptidase/peptodoglycan-binding domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15024797|gb|AAK79787.1|AE007691_5 Fusion of predicted Zn-dependent amidase/peptidase (cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family; peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325509236|gb|ADZ20872.1| peptodoglycan-binding domain protein [Clostridium acetobutylicum EA 2018] Length = 281 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LG+S V+ ++++L G + F + AV+ FQ +H + G V Sbjct: 56 VFKLGSSGSDVKSIQDKLNNYGY---AITADGKFGPSTDWAVRDFQYKHNIAMDGSVSDQ 112 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 T+ +N R+ +++ + A Sbjct: 113 TMNLLNQTPTD--------ATRVNSVIQPDPNPDVQSLKAAA 146 >gi|296447920|ref|ZP_06889829.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296254557|gb|EFH01675.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 221 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 56/180 (31%), Gaps = 41/180 (22%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + R + ++V+ L VE G +R V G+ + I Sbjct: 65 VGAAYERYLVDFKTSEPPGSIVVDTKNKFLYFVEGGGKAIRYGVATGQEA-YGWTGRATI 123 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + P W+ P+ ++ + L+ + + Sbjct: 124 GGMQEWPRWIPPKDML--ERWPHLQ----------------------------PTADAGG 153 Query: 296 FIFRQDPGKINAMASTKIEFYS--RNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 G N + S + + ++ Y +H T EP +SGC+R+R+I + Sbjct: 154 LP----GGPDNPLGSRALYLHEGGKDTLYRIHGTNEPDKIGQS---VSSGCIRMRDIDAI 206 >gi|296118595|ref|ZP_06837173.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium ammoniagenes DSM 20306] gi|295968494|gb|EFG81741.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium ammoniagenes DSM 20306] Length = 404 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 22/158 (13%) Query: 29 KPIHASVLDEIINESYHSIVN-DRFDNFLARVDMGID---SDIPIISKETIAQTEKAIAF 84 + + + E+ ++ N+ V S+ ++ KA Sbjct: 13 RILQVGDRSARVAEARATLARLGMLSNYTGDVSDWKRQKFSEEDKHFDSELSDIIKAFQQ 72 Query: 85 YQDILSRGGWPELPIRPLH-----LGNS-----------SVSVQRLRERLIISGDLDPSK 128 + I+ G +L +R L LGN V +L+++L G Sbjct: 73 SRGIIPSGNIDDLTLRELRQASYKLGNRVLSYQPNNELVGDDVSQLQKQLQELGFYM--A 130 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + F ++ +A+ +Q+ +GL G+ +T+ A++ Sbjct: 131 RIDGHFGSFTHAALLEYQLNYGLQQDGVCGPATIRALS 168 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 36/220 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQMRH 149 L +G+ S V R L G L G FD+ + +K FQ Sbjct: 15 LQVGDRSARVAEARATLARLGMLSNYTGDVSDWKRQKFSEEDKHFDSELSDIIKAFQQSR 74 Query: 150 GLDPSGMVDSSTLEAMNVP-----------------VDLRIRQLQVNLMRIKKLLEQKMG 192 G+ PSG +D TL + V + QLQ L + + + G Sbjct: 75 GIIPSGNIDDLTLRELRQASYKLGNRVLSYQPNNELVGDDVSQLQKQLQELGFYMARIDG 134 Query: 193 LRYVLVNIP--AASLEA-VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + L ++ V +T+ + + S N Sbjct: 135 HFGSFTHAALLEYQLNYGLQQDGVCGPATIRALSLLGRRITGGSAHNIQERERVRNAGPK 194 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + K ++ DP N ++ + ++ EE+ W+ Sbjct: 195 LAGKRVV----IDPGLGGSNKGQLVKGRYGQISEEEILWD 230 >gi|218671807|ref|ZP_03521476.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium etli GR56] Length = 207 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 42/188 (22%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A V V + ++ R K L V+++ L VE R + VGR Sbjct: 15 AQVVRVAQMPKYVKPQFKRKKVRLVTTEAAGTVIIDTNNKYLYLVEGNNRATRYGIGVGR 74 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 D +I R P W P + +++ Sbjct: 75 -DGFGWSGIVKIGRKAEWPSWTPPAEMRRRE----------------------------- 104 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFET 340 + + Q+ G+ N + + + R+ + +H T +P + + Sbjct: 105 ------AAKGHIIPAFQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGLNM---S 155 Query: 341 SGCVRVRN 348 SGC+R+ N Sbjct: 156 SGCIRMMN 163 >gi|217979976|ref|YP_002364123.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217505352|gb|ACK52761.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 205 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 29/176 (16%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRI-------NRIMFNPYWVIPRSIIQK---- 253 +A + G G+ QT L + + + ++ +P P +I Sbjct: 22 AQAFDGGSSGVVRGAAPASPPTQTASLSTELNRAAQPTHTLVPDPTEEKPGTITVDTKNR 81 Query: 254 --DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP--------G 303 + Q +Y + +G+ W + PP + ++ P G Sbjct: 82 YLYLSLEGGQAMRYDVGVGREGFEWQGRAYVGRRAQWPTWTPPAAMLKRRPDLPKTMIGG 141 Query: 304 KINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 N + + + Y+++ +H T EP +SGC+R+ +I+DL Sbjct: 142 VENPLGARAMYLYNKSGDTMFRIHGTNEPDTIGQ---AVSSGCIRLLNEDIVDLYE 194 >gi|229097273|ref|ZP_04228235.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-29] gi|228686084|gb|EEL40000.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-29] Length = 259 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ + N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGSAQENKPPQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|291485022|dbj|BAI86097.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. natto BEST195] Length = 250 Score = 57.7 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + ++ +L++ L + G+ + +AVK FQ+ Sbjct: 169 PLPSGVIKLTSPYRKGTNILQLQKALAALHFYPDKGAKNNGIDGVYGPKTANAVKRFQLM 228 Query: 149 HGLDPSGMVDSSTLEAMN 166 +GL G+ T + Sbjct: 229 NGLTADGIYGPKTKAKLK 246 >gi|78042988|ref|YP_359059.1| ErfK/YbiS/YcfS/YnhG family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995103|gb|ABB14002.1| ErfK/YbiS/YcfS/YnhG family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 143 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 24/99 (24%), Gaps = 7/99 (7%) Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNN-TYMHDT 326 NN + G + S + +H T Sbjct: 44 NNQKIKSWPVAVGAPSTPTPTGIYRIKNKISNPGGSPYGVLGSRWMGLTIPGGNYGIHGT 103 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 P R + GC+R+ N L P WSR Sbjct: 104 NNPASIG---REVSRGCIRMLNKD--IEELFPQVPLWSR 137 >gi|298290287|ref|YP_003692226.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296926798|gb|ADH87607.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 200 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 63/213 (29%), Gaps = 59/213 (27%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGL---RYVLVNIPAAS--------LEAVENGK 212 A + R +QL N K L Y P L V++G Sbjct: 26 APTASLTPRDKQLLANAPYQKVLPPDMYQRAIVDYSGREKPGTIVVDTDKKWLYFVQDGG 85 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 +R V VG ++++ R P W I Q + P + Sbjct: 86 KAIRYGVTVGEEG-LAFKGNAKVGRKTEWPTWTPTPEIKQ-----RIAGVPDF------- 132 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEP 329 PG N M + + +++ + +H T +P Sbjct: 133 ---------------------------VGPGPHNPMGARALYLFQGNKDTLFRIHGTNQP 165 Query: 330 ILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +SGC+R+ ++IDL + + T Sbjct: 166 EYIGQ---AISSGCIRMLNEDVIDLYTRVPQGT 195 >gi|313891875|ref|ZP_07825480.1| NlpC/P60 family protein [Dialister microaerophilus UPII 345-E] gi|313119869|gb|EFR43056.1| NlpC/P60 family protein [Dialister microaerophilus UPII 345-E] Length = 251 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G + +GNS V+ ++ +L+ G + + E+AV++FQ R L Sbjct: 17 GTGYIGNSAYKIGNSGEIVKLIQRKLVKQG---IKIEIDGKYGKDTENAVRIFQKRKKLK 73 Query: 153 PSGMVDSSTLEAM 165 G++ T A+ Sbjct: 74 VDGIIGEETYFAL 86 >gi|228989877|ref|ZP_04149854.1| hypothetical protein bpmyx0001_6440 [Bacillus pseudomycoides DSM 12442] gi|228769812|gb|EEM18398.1| hypothetical protein bpmyx0001_6440 [Bacillus pseudomycoides DSM 12442] Length = 253 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIE 314 + ++ N + K + E + N + + + PG N + + + Sbjct: 35 LSFFENGNYVRTFPVTTGKRQTPTPEGIFCIINKYKNKEYHRKNIPGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T R E++GC+R+ + Sbjct: 95 L-NEKEYAIHGTNREGTIG---RRESNGCIRMHD 124 >gi|328957385|ref|YP_004374771.1| carboxy-terminal processing protease [Carnobacterium sp. 17-4] gi|328673709|gb|AEB29755.1| carboxy-terminal processing protease [Carnobacterium sp. 17-4] Length = 497 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L + S V+ L + L G P + + FD E AVK FQ L G+V Sbjct: 404 SKTYQLKDVSAEVENLEKVLEALGY--PVESVDGYFDESTEEAVKQFQTDKKLPVDGIVT 461 Query: 159 SSTLEAMNVPVDLRIR 174 T + + I Sbjct: 462 GETATQLIESLRTLID 477 >gi|61680534|pdb|1Y7M|A Chain A, Crystal Structure Of The B. Subtilis Ykud Protein At 2 A Resolution gi|61680535|pdb|1Y7M|B Chain B, Crystal Structure Of The B. Subtilis Ykud Protein At 2 A Resolution Length = 164 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 51/154 (33%), Gaps = 12/154 (7%) Query: 211 GKVGLRSTVIVGRVDRQTPILHSRIN--RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + + P L + + + + P P +I +++ + + Sbjct: 13 NSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLN 72 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N + K + V ++ +P +I + + + + + +H T Sbjct: 73 NRV----XKTYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSAAH-YGIHGTNN 127 Query: 329 PILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 P + GC+R N +I+L + T Sbjct: 128 PASIGK---AVSKGCIRXHNKDVIELASIVPNGT 158 >gi|300024175|ref|YP_003756786.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525996|gb|ADJ24465.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 356 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 50/181 (27%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L + + V V + D + + + NP W +++ Sbjct: 67 DRRLYFITKQGEAITYPVAVPKGDAR-WQGVTSVTNKRVNPPWTPTPDMVR--------- 116 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNN 320 P G +N + + S Sbjct: 117 ------------------------------SNPRLPRWVPGGHPMNPLGIRALYLGSS-T 145 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL---LKDTPTWSRYHIEEVVKTR 375 +H T P +SGC+R+ N ++DL + ++ T TW ++ + ++ Sbjct: 146 YRIHGTDAPWTIGQ---AVSSGCIRMTNQDVLDLYPRVPVGMRVTVTWQQFKTGSAISSK 202 Query: 376 K 376 Sbjct: 203 S 203 >gi|229083982|ref|ZP_04216278.1| hypothetical protein bcere0022_6300 [Bacillus cereus Rock3-44] gi|228699272|gb|EEL51961.1| hypothetical protein bcere0022_6300 [Bacillus cereus Rock3-44] Length = 238 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNI--HMIDEKGKEVFVEEVDW----NSPEPPNFIFRQDPG--KINAMASTKIE 314 + ++ N GK N + + ++ PG N + + + Sbjct: 20 LSFFENGNYIKTFPVTTGKRQTPTPEGTFCIINKYKNKEYHRKKIPGGAPNNPLGTRWLG 79 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T R E++GC+R+ + Sbjct: 80 L-NEKEYAIHGTNREGTIG---RRESNGCIRMHD 109 >gi|290962481|ref|YP_003493663.1| serine-threonine protein kinase [Streptomyces scabiei 87.22] gi|260652007|emb|CBG75139.1| putative serine-threonine protein kinase [Streptomyces scabiei 87.22] Length = 621 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSST 161 G+S V++++ L G G+S FDA ++AV+ FQ L G V Sbjct: 554 RPGDSGDRVRQVQCMLSKRGYSLGPGGVSGEFDAGTKAAVQSFQRARQLVVKDGTVRPRV 613 Query: 162 LEAMNVP 168 A+ Sbjct: 614 WRALRST 620 >gi|304404313|ref|ZP_07385975.1| spore cortex-lytic enzyme [Paenibacillus curdlanolyticus YK9] gi|304347291|gb|EFM13123.1| spore cortex-lytic enzyme [Paenibacillus curdlanolyticus YK9] Length = 261 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +G+S V L+ RL G + F +AVK FQ + G+ G Sbjct: 33 TFSSATIKMGSSGKDVYELQGRLKFLGFYS--GKVDGNFGTTTLNAVKWFQWKFGMTADG 90 Query: 156 MVDSS 160 +V + Sbjct: 91 VVGAK 95 >gi|196248696|ref|ZP_03147396.1| spore cortex-lytic enzyme [Geobacillus sp. G11MC16] gi|196211572|gb|EDY06331.1| spore cortex-lytic enzyme [Geobacillus sp. G11MC16] Length = 263 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 2/77 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G + + G V L+ RL G + F A++ FQ ++G Sbjct: 20 AGDAAAFSPQVIQRGAVGDDVIELQARLQYLGFYK--GKIDGVFGWGTYWALRNFQQKYG 77 Query: 151 LDPSGMVDSSTLEAMNV 167 L G+ + T + Sbjct: 78 LPVDGLAGAETKRKLVK 94 >gi|147676430|ref|YP_001210645.1| hypothetical protein PTH_0095 [Pelotomaculum thermopropionicum SI] gi|146272527|dbj|BAF58276.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 185 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKD 359 + + + +H T P + ++GC+R+ ++ +L + Sbjct: 58 NPGGVLGTRWMGLSIPGGRYGIHGTNNPSSIG---GYVSNGCIRMFNEDVEELFAKVEIG 114 Query: 360 TPTW 363 TP Sbjct: 115 TPVE 118 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 ++L+N+ L E ++ V VG+ TP I + NP Sbjct: 12 HILINLATRQLSYFEGSRLMNTYPVGVGKPSTPTPTGKYSIIEKIMNPGG 61 >gi|138895808|ref|YP_001126261.1| sporulation specific N-acetylmuramoyl-L-alanineamidase [Geobacillus thermodenitrificans NG80-2] gi|134267321|gb|ABO67516.1| Sporulation specific N-acetylmuramoyl-L-alanineamidase, spore cortex-lytic enzyme [Geobacillus thermodenitrificans NG80-2] Length = 263 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 2/77 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G + + G V L+ RL G + F A++ FQ ++G Sbjct: 20 AGDAAAFSPQVIQRGAVGDDVIELQARLQYLGFYK--GKIDGVFGWGTYWALRNFQQKYG 77 Query: 151 LDPSGMVDSSTLEAMNV 167 L G+ + T + Sbjct: 78 LPVDGLAGAETKRKLVK 94 >gi|260588566|ref|ZP_05854479.1| spore cortex-lytic enzyme SleC [Blautia hansenii DSM 20583] gi|260541041|gb|EEX21610.1| spore cortex-lytic enzyme SleC [Blautia hansenii DSM 20583] Length = 421 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPS 154 P +PL +G+S +++++E+L I+ +S F ++AVK FQ GL + Sbjct: 337 PGQPLDIGSSGSKIRQIQEQLNAIANAYPALPKISVDGVFGENTQNAVKKFQQIFGLPAT 396 Query: 155 GMVDSSTLEAMN 166 G++D ST + Sbjct: 397 GIIDYSTWYEIQ 408 >gi|167465177|ref|ZP_02330266.1| cell wall hydrolase, SleB [Paenibacillus larvae subsp. larvae BRL-230010] Length = 216 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 5/167 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L++G S V L+ERL G G++ + + AV+ FQ +GL +G D Sbjct: 29 AMTLNIGTQSEHVLNLQERLSSLGYFKK--GITGYYGKITKEAVRDFQKAYGLSVTGSAD 86 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 S+TL +N + Q+ ++ + E + V + A L V++ T Sbjct: 87 SATLAKLNQMAGSK--QITLDKLARIIYAEARGESFKGQVAVGAVVLNRVQSNAFPDSIT 144 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 ++ + + + I + N Y Sbjct: 145 EVIFQPGQFSAI-RDGQYSLKPNQAAYDAARSALNGWDPTGGALYYY 190 >gi|119493546|ref|ZP_01624211.1| hypothetical protein L8106_25882 [Lyngbya sp. PCC 8106] gi|119452600|gb|EAW33782.1| hypothetical protein L8106_25882 [Lyngbya sp. PCC 8106] Length = 196 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 10/145 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSS 160 L LG + +V+ ++R I +G G + + +++AV+ FQ + GL G++ + Sbjct: 41 LKLGAAGEAVRFAQQRFIANGY---RIGFNGQYGPQMKAAVEHFQRNYGGLVVDGIIGEN 97 Query: 161 TLEAM-NVPVDLRI--RQLQVNLMRIKKLLEQKMGLRYVLVNIPA---ASLEAVENGKVG 214 T + + + R R +V K + M Y A L +NG Sbjct: 98 TWRVLCDGDAEFRRLGRTFRVRFQTTKYPYDVNMPELYQGSVGDAVECLQLRLYDNGFFL 157 Query: 215 LRSTVIVGRVDRQTPILHSRINRIM 239 + + R + Sbjct: 158 FIDGIFGPKTLEVVKAFQRREGLKV 182 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ +V+ L+ RL +G + F VK FQ R GL G+V T Sbjct: 137 GSVGDAVECLQLRLYDNGFFLF---IDGIFGPKTLEVVKAFQRREGLKVDGIVGVQTWRK 193 Query: 165 MN 166 + Sbjct: 194 LG 195 >gi|284046149|ref|YP_003396489.1| peptidoglycan-binding protein [Conexibacter woesei DSM 14684] gi|283950370|gb|ADB53114.1| Peptidoglycan-binding domain 1 protein [Conexibacter woesei DSM 14684] Length = 329 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L G S V+ L++ L +G S + F + + VK FQ L +G Sbjct: 107 SLGDRVLKKGMSGQDVRVLQDYLNRAGF---STTIDGQFGSGTQRLVKRFQQAQELTVTG 163 Query: 156 MVDSSTLEAMNV 167 +VD++T+ A+ Sbjct: 164 IVDAATVTALRK 175 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 3/111 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G S V+ L++ L +G P G F VK F+ ++ L G+ DS Sbjct: 20 RTLKQGMSGQDVRVLQDFLTRAGFTTPVGGD---FGPITLGNVKKFEKQYRLTVDGIADS 76 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + + + D R + + + +G R + + + +++ Sbjct: 77 AFVTKLREVADPRGNSTRTRVKGNATATARSLGDRVLKKGMSGQDVRVLQD 127 >gi|86748964|ref|YP_485460.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86571992|gb|ABD06549.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 263 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 46/203 (22%) Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q R+ + + + + +K G ++V+ P L Sbjct: 88 QRRYLPPMDPQAPMQMRQQEAIDPARPAFDPRYEKQIVDYQGNEKPGT--IVVDTPNKFL 145 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 V+ LR + VGR T I+ P W P+ ++ + Sbjct: 146 YLVQGDGRALRYGIGVGRPG-FTWSGVKTISAKREWPSWTPPKEMLARR----------- 193 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 P+ + G N + + + S +H Sbjct: 194 ----------------------------PDLPRFMEGGPENPLGARAMYLGSS-LYRIHG 224 Query: 326 TPEPILFNNVVRFETSGCVRVRN 348 + EP +SGC+R+RN Sbjct: 225 SNEPWTIGTN---VSSGCIRMRN 244 >gi|169335886|ref|ZP_02863079.1| hypothetical protein ANASTE_02319 [Anaerofustis stercorihominis DSM 17244] gi|169258624|gb|EDS72590.1| hypothetical protein ANASTE_02319 [Anaerofustis stercorihominis DSM 17244] Length = 214 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 +Y+ + + GG P + G+ V++ + RLI G F + E+AVK Sbjct: 135 YYRSVRTFGGSPAY-YPIIAKGSRGAYVKKAQNRLIKKGY---KISADGIFGSSTENAVK 190 Query: 144 LFQMRHGLDPSGMVDSSTLE 163 FQ + + G+V +T + Sbjct: 191 RFQKKSEITVDGIVGKNTWK 210 >gi|257869674|ref|ZP_05649327.1| carboxyl-terminal protease [Enterococcus gallinarum EG2] gi|257803838|gb|EEV32660.1| carboxyl-terminal protease [Enterococcus gallinarum EG2] Length = 473 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L G SS +V RL + L G + FD SAV+ Q + L+ + Sbjct: 383 PLPRDKELKEGQSSEAVDRLNQFLSALGY----RTTGDTFDQTTVSAVQAVQQKAELEVT 438 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G V++ T +A+ V +++Q Sbjct: 439 GKVNAETAQAIEKAVTDQLKQ 459 >gi|218530237|ref|YP_002421053.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|240138595|ref|YP_002963067.1| hypothetical protein MexAM1_META1p1980 [Methylobacterium extorquens AM1] gi|254561191|ref|YP_003068286.1| hypothetical protein METDI2768 [Methylobacterium extorquens DM4] gi|218522540|gb|ACK83125.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|240008564|gb|ACS39790.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Methylobacterium extorquens AM1] gi|254268469|emb|CAX24426.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Methylobacterium extorquens DM4] Length = 171 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 44/181 (24%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R +G ++V L V +R V VG+ +Q ++I+ + Sbjct: 28 REVVPFADGLGAGTIVVRTTERRLYLVNGDGTAIRYPVAVGKPGKQ-WSGATQIDGKYYQ 86 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P + + P + Sbjct: 87 PDWSPPAEVKRD--------------------------------------NPRLPNLIRG 108 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 N M + +H T P F + GC+R+ N D+ + T Sbjct: 109 GSPSNPMGVAAMTLRGGE-YAIHGTNRPNSIGT---FASYGCIRMYN-QDIADLFGRVTV 163 Query: 362 T 362 Sbjct: 164 G 164 >gi|152975663|ref|YP_001375180.1| spore cortex-lytic enzyme SleB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024415|gb|ABS22185.1| Spore cortex-lytic enzyme SleB [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + + G S V L+ RL +G + + F A++ FQ + GL Sbjct: 31 QAFSNQVIQRGASGEDVIELQSRLKYNGYY--TGKVDGVFGWGTYWALRNFQQKFGLKVD 88 Query: 155 GMVDSST 161 G+ T Sbjct: 89 GLAGPKT 95 >gi|302556454|ref|ZP_07308796.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302474072|gb|EFL37165.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 113 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 PE+P L G++ V L+ RL+ + ++ +D V AV FQ +G+ Sbjct: 35 PEIPGTGLLRPGDTGHGVYELQVRLLQIPHIYDGGAINGRYDTEVRQAVARFQNAYGIHG 94 Query: 154 S--GMVDSSTLEAM 165 G+ +T A+ Sbjct: 95 DETGIYGDNTRHAL 108 >gi|295398972|ref|ZP_06808954.1| spore cortex-lytic enzyme [Geobacillus thermoglucosidasius C56-YS93] gi|312110421|ref|YP_003988737.1| spore cortex-lytic enzyme [Geobacillus sp. Y4.1MC1] gi|294978438|gb|EFG54034.1| spore cortex-lytic enzyme [Geobacillus thermoglucosidasius C56-YS93] gi|311215522|gb|ADP74126.1| spore cortex-lytic enzyme [Geobacillus sp. Y4.1MC1] Length = 275 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + + G V L+ RL G + + F AV+ FQ +GL Sbjct: 33 KAFSNQVIQRGAVGDDVIELQARLQYIGFY--NGKIDGVFGWRTYWAVRNFQYEYGLPVD 90 Query: 155 GMVDSSTLEAMNV 167 G+V ST + Sbjct: 91 GLVGESTKAKLVK 103 >gi|284034144|ref|YP_003384075.1| Zinc D-Ala-D-Ala carboxypeptidase [Kribbella flavida DSM 17836] gi|283813437|gb|ADB35276.1| Zinc D-Ala-D-Ala carboxypeptidase [Kribbella flavida DSM 17836] Length = 255 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G S V++L+ R ++G AF ++AV FQ +GL G+ Sbjct: 48 SRTLSEGASGEDVRQLQVR--VAGYPGYGGHLAADGAFGPATKAAVTRFQQAYGLAADGI 105 Query: 157 VDSSTLEAM 165 S+T + Sbjct: 106 AGSATFSKL 114 >gi|86749040|ref|YP_485536.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86572068|gb|ABD06625.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 406 Score = 57.3 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 60/198 (30%), Gaps = 48/198 (24%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 P + QL +L R + K ++V+ L + +R V VGR D Sbjct: 199 EQPDADQEFQLPQHLRRQEVAFPTKEPAGTIVVDTGNTYLYYILGNGRAMRYGVRVGR-D 257 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 T +++R P W P +I++ Sbjct: 258 GFTWNGVQKVSRKAEWPDWHPPTEMIERQ------------------------------- 286 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 P G N M + + S Y +H T +P F +SGC+ Sbjct: 287 --------PYLPRFMAGGPGNPMGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCI 333 Query: 345 RV--RNIIDLDVWLLKDT 360 + ++ DL + T Sbjct: 334 GMLNDDVSDLFERVKVGT 351 >gi|188581741|ref|YP_001925186.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179345239|gb|ACB80651.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 225 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 44/162 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++V+ L V +R V VGR T ++I P W Sbjct: 89 FNGRYAPGTIVVSTAERRLYYVLPDGQAIRYGVGVGRPG-FTWSGVNKITAKREWPGWTP 147 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P +++ + P+ G N Sbjct: 148 PAAMLARR---------------------------------------PDLPRYMAGGIEN 168 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + + +H + EP +SGC+R+ N Sbjct: 169 PLGARAMYIGKSE-YRIHGSNEPDTIGQ---AVSSGCIRMTN 206 >gi|326391827|ref|ZP_08213343.1| carboxyl-terminal protease [Thermoanaerobacter ethanolicus JW 200] gi|325992133|gb|EGD50609.1| carboxyl-terminal protease [Thermoanaerobacter ethanolicus JW 200] Length = 457 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ V+ L++ L I + F +AVK Q + GL P+G+ D Sbjct: 370 GTLRVGSRGNDVKILQKNLNILKF--NAGPEDGIFGPKTANAVKELQKKAGLTPTGVFDK 427 Query: 160 STLEAMNV 167 +T +A+ Sbjct: 428 NTYDALVK 435 >gi|258514598|ref|YP_003190820.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778303|gb|ACV62197.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum acetoxidans DSM 771] Length = 411 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 52/197 (26%), Gaps = 65/197 (32%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +++N L +N ++ V GR TP +I + Sbjct: 30 IIINKQNNKLAFYQNNQLVKIFPVATGREPSYTPEGSFKIINKII--------------- 74 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIE 314 +P Y+ + D G N + + + Sbjct: 75 ------NPYYI------------------------------KLKIDGGAPDNPLGNRWMG 98 Query: 315 FYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI----- 368 + +H P + + GC+R+ N + WL + P + I Sbjct: 99 LNAGGGTYGIHGNSNPASIGT---YASGGCIRMSNNDVI--WLYERIPIGTPVEIINYSM 153 Query: 369 --EEVVKTRKTTPVKLA 383 + + + + + Sbjct: 154 DFDNNLLDGERRDIIVK 170 >gi|217978437|ref|YP_002362584.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217503813|gb|ACK51222.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 200 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 46/174 (26%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 V+V+ L V ++ V VGR T ++ + P W P Sbjct: 66 DQPGGTVVVSTSERKLNYVLGDGTAIQYGVGVGREG-FTWSGTKKVTMVREWPGWTPPSQ 124 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 ++++ P+ G N + Sbjct: 125 MLKRR---------------------------------------PDLPRYMPGGIDNPLG 145 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + I S +H + EP +SGC+R+ N + DL + T Sbjct: 146 ARAIYLGSS-LYRIHGSNEPETIGA---AVSSGCIRMTNEDVTDLAARVKVGTK 195 >gi|162456517|ref|YP_001618884.1| hypothetical protein sce8234 [Sorangium cellulosum 'So ce 56'] gi|161167099|emb|CAN98404.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 834 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 3/92 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G V+ ++ L +G L F A E+A ++FQ GL +G Sbjct: 392 PGGGLARGAKGPEVKAWQQHLLTWRAGLLPRFGADGE-FGAETEAATRIFQQEMGLPVTG 450 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 V T EAM + L++ + L+ Sbjct: 451 AVGPETREAMQRALPRPPCALELPRALGRALM 482 >gi|146339182|ref|YP_001204230.1| putative ErfK/YbiS/YcfS/YnhG signal peptide [Bradyrhizobium sp. ORS278] gi|146191988|emb|CAL75993.1| conserved hypothetical protein, putative ErfK/YbiS/YcfS/YnhG precursor; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 226 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 16/94 (17%) Query: 297 IFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IID 351 PG N M S + ++ + +H T +P +SGC+R+ N ID Sbjct: 131 PTFVAPGPDNPMGSRAMYLYANGKDTLFRIHGTNQPEYIGAS---ISSGCIRLTNEDAID 187 Query: 352 LDV--------WLLKDTPTWSRYHIEEVVKTRKT 377 L +L S Y + ++ T Sbjct: 188 LYNRVKVGTIVVVLDPKKGDSPYKPQMALQGGGT 221 >gi|326201826|ref|ZP_08191697.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium papyrosolvens DSM 2782] gi|325988426|gb|EGD49251.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium papyrosolvens DSM 2782] Length = 123 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 14/116 (12%) Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI + L + N + GK V Sbjct: 15 SITINRSLHKLTLYRDSIVFKNYPVAV--GKPSTPTPVGTFRIVNRAI------NPGGPF 66 Query: 309 ASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + + + N +H T P ++GC+R+ N +I+L + T Sbjct: 67 GARWLGLNAPNCDYGIHGTNNPSSIGKD---VSNGCIRMFNEQVIELSNLVSIGTV 119 >gi|188581211|ref|YP_001924656.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179344709|gb|ACB80121.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 171 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 44/175 (25%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + +G ++V L V +R V VG+ +Q + I+ + Sbjct: 27 AREIVPFAEGVGAGTIVVRTTERRLYLVNGDGTAIRYPVAVGKPGKQ-WSGATHIDGKYY 85 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W P + + P + Sbjct: 86 QPDWSPPAEVKRDH--------------------------------------PRLPNLIR 107 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N M + +H T P F + GC+R+ N D+ Sbjct: 108 GGSPSNPMGVAAMTLRGGE-YAIHGTNRPSSIGT---FASYGCIRMYN-QDIADL 157 >gi|225166762|ref|YP_002650747.1| hypothetical protein pC2C203U28_p029 [Clostridium botulinum] gi|253771405|ref|YP_003034242.1| peptidoglycan binding domain protein [Clostridium botulinum D str. 1873] gi|225007426|dbj|BAH29522.1| conserved hypothetical protein [Clostridium botulinum] gi|253721382|gb|ACT33675.1| peptidoglycan binding domain protein [Clostridium botulinum D str. 1873] Length = 266 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V +L++ L G + F ++ VK FQ +GL +G+VD T Sbjct: 2 LKQGDRGANVSKLQKTLKYLGY--SCGKIDGIFGESTKNQVKRFQKHNGLPANGIVDVVT 59 >gi|307265061|ref|ZP_07546621.1| carboxyl-terminal protease [Thermoanaerobacter wiegelii Rt8.B1] gi|306919859|gb|EFN50073.1| carboxyl-terminal protease [Thermoanaerobacter wiegelii Rt8.B1] Length = 457 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ V+ L++ L I + F +AVK Q + GL P+G+ D Sbjct: 370 GTLKVGSRGNDVKILQKNLNILKF--NAGPEDGIFGPKTANAVKELQKKAGLTPTGVFDK 427 Query: 160 STLEAMNV 167 +T +A+ Sbjct: 428 NTYDALVK 435 >gi|297617582|ref|YP_003702741.1| 3D domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145419|gb|ADI02176.1| 3D domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 290 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 14/90 (15%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 T +A+ YQ R L G + V RL+E L G L F Sbjct: 98 TRRALDAYQ------------PRLLFEGCTGADVTRLQETLKERGYLTGDA--DGKFGPE 143 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 AV FQ + L+ +V T +A+ Sbjct: 144 TRKAVLAFQKANSLEADAIVGPLTRQALAQ 173 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L++G V RL+ L + G F + AV Q + G+V Sbjct: 39 RNLYVGCEGEDVARLQNTLNLKGYYCGPA--DQKFGVKTQKAVLALQQENACRVDGIVGP 96 Query: 160 STLEAMNV 167 T A++ Sbjct: 97 ETRRALDA 104 >gi|168333614|ref|ZP_02691874.1| spore cortex-lytic enzyme SleC [Epulopiscium sp. 'N.t. morphotype B'] Length = 145 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P + +GN +V+ ++E R+ S L P + F E A+K+FQ L Sbjct: 59 SFPGYSIKIGNEGAAVRTIQEQLNRISQSYPLIPKVPSNGVFGEKTEEAIKVFQKVFYLA 118 Query: 153 PSGMVDSSTL 162 P G+V +T Sbjct: 119 PDGVVGKATW 128 >gi|167629767|ref|YP_001680266.1| peptidoglycan binding domain 1, putative [Heliobacterium modesticaldum Ice1] gi|167592507|gb|ABZ84255.1| peptidoglycan binding domain 1, putative [Heliobacterium modesticaldum Ice1] Length = 230 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 2/79 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + + P+ R L+ G S VQ+L+ L G F A A+K FQ Sbjct: 22 LTALAATPQFGSRQLYRGVSGADVQQLQGYLKEMGYFAEEPT--GYFGAITFDALKQFQA 79 Query: 148 RHGLDPSGMVDSSTLEAMN 166 L G+ T +A+ Sbjct: 80 YRDLIIDGVAGPQTFKALR 98 >gi|16079624|ref|NP_390448.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310497|ref|ZP_03592344.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221314821|ref|ZP_03596626.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319743|ref|ZP_03601037.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324021|ref|ZP_03605315.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. SMY] gi|1730978|sp|P54450|CWLH_BACSU RecName: Full=N-acetylmuramoyl-L-alanine amidase CwlH; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|1303785|dbj|BAA12441.1| YqeE [Bacillus subtilis] gi|2635016|emb|CAB14512.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] Length = 250 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + ++ +L++ L + + G+ + +AVK FQ+ Sbjct: 169 PLPSGVIKLTSPYRKGTNILQLQKALAVLHFYPDKGAKNNGIDGVYGPKTANAVKRFQLM 228 Query: 149 HGLDPSGMVDSSTLEAMN 166 +GL G+ T + Sbjct: 229 NGLTADGIYGPKTKAKLK 246 >gi|329928325|ref|ZP_08282196.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] gi|328937882|gb|EGG34287.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] Length = 223 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 15/104 (14%) Query: 268 DNNIHMIDEKGKEVFVEEV---DWNSPEP-PNFIFRQDP---GKINAMASTKIEFYSRNN 320 + + ++ E G+ + V + ++P P +F + G + I Sbjct: 42 ERHKLLVREHGQIIKTYSVAVGNPSTPTPVGDFRVKYKGTNWGP--SFGPRWIGLNVPWG 99 Query: 321 -TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 +H T +P + GC+R+ N +I+L + T Sbjct: 100 NFGIHGTNKPYSIGQ---HLSHGCIRMHNKDVIELYELIPIGTK 140 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ VQ ++ RL +G + F ++K +Q H L P+G+V S Sbjct: 158 LAEGDVGGDVQLIQSRLKSAGYY--NGECDGKFRFNTTESLKKYQRDHHLIPNGVVSSKE 215 Query: 162 LEAMN 166 E + Sbjct: 216 YEELG 220 >gi|289667240|ref|ZP_06488315.1| hypothetical protein XcampmN_01617 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 427 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 9/117 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L G V++L+ +L G + F + AV+ FQ GL G Sbjct: 209 DDKLEQGERGEQVKQLQSQLAQLGAVGCDGKPPHADGDFGGNTKYAVEQFQRERGLQVDG 268 Query: 156 MVDSSTLEAMNV-----PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 +V S A++ + V R L + + + N + LEA Sbjct: 269 VVGSQAQAALSQALSQHTAKQTAAPMNVPQTRSPLLSDPRHPENA-MYNGAVSKLEA 324 >gi|153939027|ref|YP_001390990.1| putative peptidoglycan-binding protein [Clostridium botulinum F str. Langeland] gi|152934923|gb|ABS40421.1| putative peptidoglycan-binding protein [Clostridium botulinum F str. Langeland] gi|295319049|gb|ADF99426.1| putative peptidoglycan-binding protein [Clostridium botulinum F str. 230613] Length = 155 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F AV+ FQ L G V T Sbjct: 85 RQGARGEITKTIQQMLINIGYPVGSYGADGVFGNGTVIAVEAFQRDCNLALDGTVGKDTW 144 Query: 163 EAM 165 +A+ Sbjct: 145 KAL 147 >gi|163851429|ref|YP_001639472.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163663034|gb|ABY30401.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 171 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 44/174 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R +G ++V L V +R V VG+ +Q ++I+ + Sbjct: 28 REVVPFADGLGAGTIVVRTTERRLYLVNGDGTAIRYPVAVGKPGKQ-WSGATQIDGKYYQ 86 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P + + P + Sbjct: 87 PDWSPPAEVKRD--------------------------------------NPRLPNLIRG 108 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N M + +H T P F + GC+R+ N D+ Sbjct: 109 GSPSNPMGVAAMTLRGGE-YAIHGTNRPNSIGT---FASYGCIRMYN-QDIADL 157 >gi|150397160|ref|YP_001327627.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150028675|gb|ABR60792.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 229 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 49/207 (23%) Query: 151 LDPSGMVDSSTLEAMNVPVDL------RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 L + + DS T + +N R Q+ R ++++ Sbjct: 34 LAQTQIYDSKTKKWVNYDKRKARQYFSRNNQVPEAFRRQMVPFRTAEVPGTIIIDGNQHF 93 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V+ G +R + VGR R+ R P W P ++ + Sbjct: 94 LYLVQPGGQAIRYGIGVGREG-FGWAGIVRVGRRAEWPTWTPPAEMVAR----------- 141 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN--TY 322 W G N + + + Y ++ Y Sbjct: 142 -----------------DPNAAKWAGG--------MPGGPDNPLGARALYLYEGDSDTIY 176 Query: 323 -MHDTPEPILFNNVVRFETSGCVRVRN 348 +H T EP +SGC+R+ N Sbjct: 177 RIHGTVEPWTIG---LDVSSGCIRMNN 200 >gi|228997686|ref|ZP_04157293.1| Spore cortex-lytic enzyme [Bacillus mycoides Rock3-17] gi|229009044|ref|ZP_04166383.1| Spore cortex-lytic enzyme [Bacillus mycoides Rock1-4] gi|228752214|gb|EEM01903.1| Spore cortex-lytic enzyme [Bacillus mycoides Rock1-4] gi|228762030|gb|EEM10969.1| Spore cortex-lytic enzyme [Bacillus mycoides Rock3-17] Length = 251 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 10/149 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + + G S V L+ RL +G + + F A++ FQ + GL Sbjct: 31 QAFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQQKFGLPVD 88 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ + T + M V + + + + N+P + Sbjct: 89 GLAGAKT-KQMLVKATKYEKS---TANKGNTGGQSNKPAQNKGTNVPNG----YSQNDIQ 140 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPY 243 L + + G + + + ++ N Sbjct: 141 LMANAVYGESRGEPYLGQVAVAAVILNRV 169 >gi|228991584|ref|ZP_04151528.1| Spore cortex-lytic enzyme [Bacillus pseudomycoides DSM 12442] gi|228768153|gb|EEM16772.1| Spore cortex-lytic enzyme [Bacillus pseudomycoides DSM 12442] Length = 251 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 10/149 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + + G S V L+ RL +G + + F A++ FQ + GL Sbjct: 31 QAFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQQKFGLPVD 88 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ + T + M V + + + + N+P + Sbjct: 89 GLAGAKT-KQMLVKATKYEKS---TANKGNTGGQSNKPAQNKGTNVPNG----YSQNDIQ 140 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPY 243 L + + G + + + ++ N Sbjct: 141 LMANAVYGESRGEPYLGQVAVAAVILNRV 169 >gi|160902066|ref|YP_001567647.1| ErfK/YbiS/YcfS/YnhG family protein [Petrotoga mobilis SJ95] gi|160359710|gb|ABX31324.1| ErfK/YbiS/YcfS/YnhG family protein [Petrotoga mobilis SJ95] Length = 389 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 296 FIFRQDPGK-INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + PG +N M + ++ + +H T +P + GC+R+ N Sbjct: 313 YDEYIPPGSLMNGMGTRWLQLSNPQ-YGIHGTTKPWEIGKR---ISHGCIRMFN 362 >gi|312879709|ref|ZP_07739509.1| ErfK/YbiS/YcfS/YnhG family protein [Aminomonas paucivorans DSM 12260] gi|310783000|gb|EFQ23398.1| ErfK/YbiS/YcfS/YnhG family protein [Aminomonas paucivorans DSM 12260] Length = 198 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 6/101 (5%) Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGK-INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 +V D + F + S I FY+ +H T P R Sbjct: 84 KVRRVLQDASQLVYDPAWFDEPGEPQKGVYGSKLISFYNPWQIAIHGTNSPRSVG---RR 140 Query: 339 ETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 T GC+R++N I L ++ W + KT Sbjct: 141 ATHGCIRMKNRDINTLVAYVKPGMKIWIVGKDGKAPPGGKT 181 >gi|251779050|ref|ZP_04821970.1| peptidoglycan-binding domain 1 protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083365|gb|EES49255.1| peptidoglycan-binding domain 1 protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 791 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 15/151 (9%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD----LDPSK 128 + +K + I G P PL L + + +V+ ++++L + Sbjct: 298 QYYFGYDKTLVRATMIE--GIPESYPGTPLRLNDENNNVKVIQKQLNRISKNFPAIPKIP 355 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN---VPVDLRIRQLQVNLMRIKK 185 + FD E AVK+FQ L G+V +T ++ V V Q + + Sbjct: 356 YENGKFDKITEDAVKVFQKVFNLTQDGIVGRATWYRISSIYVGVKRLAELDQEPEIDGEN 415 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 G P L+ G+ Sbjct: 416 PPPDSGGEY------PGYLLKYGSRGEKVKE 440 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 13/123 (10%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG--DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G+ V+ ++ L + P+ F + AV FQ GL P G Sbjct: 425 PGYLLKYGSRGEKVKEVQNYLSVISKSYNIPNIKADGIFGQMTKDAVIAFQRLFGLAPDG 484 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ +T + V IK +Q + + P L G+ Sbjct: 485 IIGINTWN----------KIYYVYKDLIKGTAQQDLNEEFDGKY-PGYLLSYGSKGEKVR 533 Query: 216 RST 218 Sbjct: 534 EMQ 536 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG+ V+ + L + + + FD E++VK Q + GL + Sbjct: 703 PGFDLELGDQDGYVKVFQMYVNVLAKNNYISSQIEENGVFDKRTENSVKELQEKFGLKVT 762 Query: 155 GMVDSSTLE 163 G+VD T + Sbjct: 763 GVVDKITWD 771 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG--DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G+ V+ ++ L + PS F +AV FQ GL G Sbjct: 519 PGYLLSYGSKGEKVREMQTYLSVVSKSYNIPSINADGIFGDMTRNAVLSFQRLFGLAQDG 578 Query: 156 MVDSSTLEAM 165 +V +T + Sbjct: 579 VVGLNTWNKI 588 >gi|154246694|ref|YP_001417652.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160779|gb|ABS67995.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 170 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 8/74 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L+ +L + F E A+K +Q +HGL G+ T Sbjct: 4 LKRGLSGEPVKILQAKLGV--------AADGKFGPGTEEALKAYQTQHGLAADGIAGPDT 55 Query: 162 LEAMNVPVDLRIRQ 175 A+ +P + + Q Sbjct: 56 FAALGLPELILLTQ 69 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 23/103 (22%) Query: 78 TEKAIAFYQ---DILSRG----------GWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 TE+A+ YQ + + G G PEL L G+ +V++L+ L I+ Sbjct: 32 TEEALKAYQTQHGLAADGIAGPDTFAALGLPEL--ILLTQGSKGETVKKLQTALGIT--- 86 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 A+ AV+ FQ ++GL+ GM TL ++V Sbjct: 87 -----ADGAYGPGTAKAVEAFQAKNGLEADGMAGPVTLSKIDV 124 >gi|260174282|ref|ZP_05760694.1| SpoIID/LytB domain-containing protein [Bacteroides sp. D2] gi|315922552|ref|ZP_07918792.1| predicted protein [Bacteroides sp. D2] gi|313696427|gb|EFS33262.1| predicted protein [Bacteroides sp. D2] Length = 285 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 12/141 (8%) Query: 105 GNSSVSVQRLRERL-----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G S V L +L II D++ + V + +E+A+K FQ H G+V Sbjct: 128 GVSGKDVAELANKLVKIRYIIKSDIEKNYSGDVKYSIRLENAIKKFQKDHNQVVDGIVGK 187 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T+EA+N ++ R+ ++ L ++ + + ++ ++ G + Sbjct: 188 KTIEAINKQIEQINRETVNTDVQKYNLGDRILKKQMQGYDVTQLKNILIDKGYLS----- 242 Query: 220 IVGRVDRQTPILHSRINRIMF 240 G++ + T + + + Sbjct: 243 --GKLLKGTSLFDEETEKAVI 261 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L V +L+ LI G L + FD E AV FQ G+D G+V++ Sbjct: 219 LKKQMQGYDVTQLKNILIDKGYLSGKLLKGTSLFDEETEKAVIKFQKSIGIDADGIVETQ 278 Query: 161 TL 162 T+ Sbjct: 279 TV 280 >gi|159046137|ref|YP_001541809.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|159046472|ref|YP_001542142.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|157913896|gb|ABV95328.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|157914231|gb|ABV95661.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] Length = 193 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 54/217 (24%) Query: 147 MRHGLDPSGMVD---SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 R L +G + +T A V + R VN R + G +V+ + Sbjct: 5 TRRELICAGAMGCFLPTTAWAHKVKLPERFEPQLVNTRRGDWV----KGDVHVVPD--DF 58 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L + + +R V VGR P + R P+W ++I+++ + Sbjct: 59 FLYFMLEDGMAIRYGVGVGRKGLYEP-GEFTVARKAKWPWWRPTNAMIRREPRKYAK--- 114 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN--T 321 + G N + + + Y T Sbjct: 115 --------------------------------YKDGLKGGPNNPLGARALYLYDAEGRDT 142 Query: 322 Y--MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 Y +H T P + ++GC R+ N + DL Sbjct: 143 YLRIHGTNAPETIGS---AVSNGCARLTNEHVKDLYE 176 >gi|86138807|ref|ZP_01057379.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. MED193] gi|85824454|gb|EAQ44657.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. MED193] Length = 199 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 55/188 (29%), Gaps = 45/188 (23%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLE-QKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVI 220 + +++ + + +G+ +L ++ + ++ +G+ Sbjct: 36 SEEPISNQPSVQRNISSFRQQNWQDHFDDLGMGCLLADVTSRAVHYWGGDGETYRLYPSS 95 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 V + T ++++ R NP W S+ ++D Sbjct: 96 VPMSEELTKRGYTKVVRKAENPSWTPTPSMRERD-------------------------- 129 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P+ R G N + + + +H T + R + Sbjct: 130 -------------PSLPTRLPGGPGNPLGTRAMYLSWP-AYLVHGTHDTRKIG---RQSS 172 Query: 341 SGCVRVRN 348 SGC+ + N Sbjct: 173 SGCIGLYN 180 >gi|328545089|ref|YP_004305198.1| ErfK/YbiS/YcfS/YnhG family [polymorphum gilvum SL003B-26A1] gi|326414831|gb|ADZ71894.1| ErfK/YbiS/YcfS/YnhG family [Polymorphum gilvum SL003B-26A1] Length = 241 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 44/183 (24%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 R RQ+ + + ++V+ A L V+ G R + VGR Sbjct: 84 ARTQTPRHRQIAPQYLPTIVDYDGPHAPGTIVVDTNARYLYLVQRGGTARRYGIGVGRPG 143 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 + + R P W P + Q+ Sbjct: 144 FE-WAGTHTVTRKAEWPDWRPPSEMRQRQ------------------------------- 171 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 P+ G N + + + +H + EP + +SGC+R Sbjct: 172 --------PDLPEFMPGGPQNPLGARALYLG-STLYRIHGSNEPWTIGH---AVSSGCIR 219 Query: 346 VRN 348 +RN Sbjct: 220 MRN 222 >gi|297204419|ref|ZP_06921816.1| peptidoglycan-binding membrane protein [Streptomyces sviceus ATCC 29083] gi|197716685|gb|EDY60719.1| peptidoglycan-binding membrane protein [Streptomyces sviceus ATCC 29083] Length = 300 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%) Query: 95 PELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ-MRHG 150 P + L LG+ V L+ RL G D FD V+SAV+ +Q R Sbjct: 220 PTVSSGLPPVLSLGDKGPEVVELQLRLRQVGLYDGEADGD--FDQQVQSAVRTYQVTRFV 277 Query: 151 LDPS-GMVDSSTLEAMN 166 L G+ +T ++ Sbjct: 278 LQDDSGVYGRATRASLE 294 >gi|170760335|ref|YP_001788499.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407324|gb|ACA55735.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A3 str. Loch Maree] Length = 231 Score = 57.3 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 11/74 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + ++ + +H T P Sbjct: 68 ATGKSATPSPIGTWKIINKGTW-------GSSFGGRWMGLNVPWGKYGIHGTNAPNSIGW 120 Query: 335 VVRFETSGCVRVRN 348 + GC+R++N Sbjct: 121 SS---SHGCIRMKN 131 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G V +++ L + + ++S V FQ + + S ++S Sbjct: 162 RPIEPGMRGSDVYEVQKLLKGKKYY--NGEPDGIYGESMKSVVHKFQEDNNIPLSNTINS 219 Query: 160 STLEAMNV 167 S E + V Sbjct: 220 SFYEKLGV 227 >gi|302558357|ref|ZP_07310699.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces griseoflavus Tu4000] gi|302475975|gb|EFL39068.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces griseoflavus Tu4000] Length = 231 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S V +L+ R+ ++ A +AVK FQ +GL G+ Sbjct: 27 RTLSQGSSGSDVTQLQIRVAGWVTSGERLAYDGSYGARTAAAVKKFQAAYGLAADGVAGP 86 Query: 160 STLEAM 165 +T + Sbjct: 87 ATFSKI 92 >gi|254488370|ref|ZP_05101575.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. GAI101] gi|214045239|gb|EEB85877.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. GAI101] Length = 187 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 49/212 (23%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVE-NGKVGLR 216 + L A V +R + + + +G ++ + + +L +G+ Sbjct: 22 PAILRAETTDVAA-VRHNTSSFTQQRWEDHFDTLGKAAIVADTTSRALHFWSGDGETYNI 80 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 V R D T ++RI R P W S+I+++ D +Y+ Sbjct: 81 YPTSVPRSDELTKRGYTRIVRKRVGPDWTPTPSMIERNP------DLKYM---------- 124 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 PG N + + + +H T + Sbjct: 125 ------------------------PPGPDNPLGTHAMYLDWP-AYLIHGTHDTRKIG--- 156 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 R + GC+ + N + L + P ++ I Sbjct: 157 RQSSDGCIGLYN--HMIEALFQIAPVGTQVRI 186 >gi|167945516|ref|ZP_02532590.1| general secretion pathway protein A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 99 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 94 WPELPIRPL-HLGNSSVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W L G+ V LR RL +S G + G+S FD + ++ +Q+R GL Sbjct: 5 WRPHAGEALIGPGSDGPLVTWLRRRLALSNGIKLSADGVSQQFDEELGVQLREYQLRTGL 64 Query: 152 DPSGMVDSST 161 P G+ T Sbjct: 65 KPDGVAGQKT 74 >gi|85713538|ref|ZP_01044528.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] gi|85699442|gb|EAQ37309.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] Length = 221 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 8/66 (12%) Query: 294 PNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN-- 348 R G N + + + +++ + +H T +P +SGC+R+ N Sbjct: 130 GGLPSRVAGGPDNPLGARALYLYQGNKDTLFRIHGTNQPEYIGTS---ISSGCIRMTNED 186 Query: 349 IIDLDV 354 IDL Sbjct: 187 AIDLYD 192 >gi|298292414|ref|YP_003694353.1| peptidoglycan-binding protein [Starkeya novella DSM 506] gi|296928925|gb|ADH89734.1| Peptidoglycan-binding domain 1 protein [Starkeya novella DSM 506] Length = 174 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V+ L+E+L + F E A+K +Q +HGL G+ T Sbjct: 4 LKKGLAGAPVKILQEKLGV--------PADGRFGPKTEEALKAYQKQHGLSADGIAGPDT 55 Query: 162 LEAMN 166 A+ Sbjct: 56 FAALG 60 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S +V++L+ L I G F AVK +Q +GL+ G +T Sbjct: 67 LKVGTSGETVKKLQSALGI--------GADGKFGPGTAKAVKEYQAANGLEADGYAGPAT 118 Query: 162 LEAMN 166 L + Sbjct: 119 LAKLA 123 >gi|315150422|gb|EFT94438.1| peptidase [Enterococcus faecalis TX0012] Length = 477 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV FQ ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDFQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|296120396|ref|YP_003628174.1| ErfK/YbiS/YcfS/YnhG family protein [Planctomyces limnophilus DSM 3776] gi|296012736|gb|ADG65975.1| ErfK/YbiS/YcfS/YnhG family protein [Planctomyces limnophilus DSM 3776] Length = 396 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 7/74 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN- 348 P + N + ++ + H T EP + GC+R++N Sbjct: 323 QYTDPEGRVIEGKDPRNPLGPRWLDLGNSYGI--HGTIEPESIGK---AASRGCIRLQND 377 Query: 349 -IIDLDVWLLKDTP 361 I++ +L+K + Sbjct: 378 DAIEVYDFLVKGSE 391 >gi|91975749|ref|YP_568408.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91682205|gb|ABE38507.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 224 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 57/196 (29%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V+ L V++G +R + VG +++ + P W S I + Sbjct: 72 IVVDSDNHYLYYVQDGGKAIRYGITVGEEA-MAWSGIAKVGAMAEWPAWHPTPSEISRLG 130 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + PG N M S I Sbjct: 131 VPRF----------------------------------------VAPGPDNPMGSRAIYL 150 Query: 316 YS--RNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV--------WLLKDTPT 362 YS ++ + +H T +P +SGC+R+ N +IDL +L+ Sbjct: 151 YSGGKDTLFRIHGTNQPEYIGAS---ISSGCIRMTNEDVIDLYNRVKMGAIVVVLEPKHG 207 Query: 363 WSRYHIEEVVKTRKTT 378 S Y+ + ++ +T Sbjct: 208 DSPYNSKMALQGGGST 223 >gi|228996068|ref|ZP_04155720.1| hypothetical protein bmyco0003_6620 [Bacillus mycoides Rock3-17] gi|229003684|ref|ZP_04161496.1| hypothetical protein bmyco0002_6550 [Bacillus mycoides Rock1-4] gi|228757521|gb|EEM06754.1| hypothetical protein bmyco0002_6550 [Bacillus mycoides Rock1-4] gi|228763635|gb|EEM12530.1| hypothetical protein bmyco0003_6620 [Bacillus mycoides Rock3-17] Length = 253 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNI--HMIDEKGKEVFVEEVDW----NSPEPPNFIFRQDPG--KINAMASTKIE 314 + ++ N GK N + + + PG N + + + Sbjct: 35 LSFFENGNYVRTFPVTTGKRQTPTPEGTFCIINKYKNKEYHRKNIPGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T R E++GC+R+ + Sbjct: 95 L-NEKEYAIHGTNREGTIG---RRESNGCIRMHD 124 >gi|218673428|ref|ZP_03523097.1| hypothetical protein RetlG_18533 [Rhizobium etli GR56] Length = 165 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 4/131 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + ++ RL+ L +G + V AV F+ + L G D + Sbjct: 38 PADPEPAIVRLQVLLDRAG--SSPGVIDGLSGENVNKAVAGFEAMNKLPVDGRPDPEVVS 95 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVG 222 + + +R V+ L+E + + E + + Sbjct: 96 RLEDNAAI-VRSYVVSPEDATGLVETIPEDYGEKAKMQSLGYTSVAEKLSERFHMGLDLL 154 Query: 223 RVDRQTPILHS 233 Sbjct: 155 NALNPASQFSP 165 >gi|325293693|ref|YP_004279557.1| hypothetical protein AGROH133_08049 [Agrobacterium sp. H13-3] gi|325061546|gb|ADY65237.1| hypothetical protein AGROH133_08049 [Agrobacterium sp. H13-3] Length = 205 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 43/183 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ + +++ L R + + V+V+ PA L V +R V VGR Sbjct: 42 PEMHLDKVKPELRRQEVAYDTAHPAGTVIVDTPARRLYYVLGDGRAMRYGVGVGRQG-LA 100 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I R P W +++++D ++ +Y + Sbjct: 101 LKGDAYIGRKSEWPSWTPTANMMRRDP-----RNLKYA--GGME---------------- 137 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 G N + + + + +H T +P + + +SGC+R Sbjct: 138 -------------GGPNNPLGARALYLYRGGNDTMFRLHGTNQPQSIGHAM---SSGCIR 181 Query: 346 VRN 348 + N Sbjct: 182 MLN 184 >gi|190890872|ref|YP_001977414.1| hypothetical protein RHECIAT_CH0001255 [Rhizobium etli CIAT 652] gi|190696151|gb|ACE90236.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 244 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 44/199 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + Q+ R + L ++V+ P+ L V+ + +R V +GR Sbjct: 79 PAVPYEQIDPRYYRQRVLDPTGQPPGTIVVDTPSRFLYLVQADGMAMRYGVGIGREGFA- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY-LKDNNIHMIDEKGKEVFVEEVD 287 I P W P +M+A + +Y + + + Sbjct: 138 WQGSGVIQWRQKWPRWKPP-----NEMVARQPELVKYSIDNGGME--------------- 177 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCV 344 PG N + + + F + + Y +H P+ +SGCV Sbjct: 178 --------------PGLKNPLGARALYIFSNGEDTLYRLHGNPDWRSIGK---AVSSGCV 220 Query: 345 RV--RNIIDLDVWLLKDTP 361 R+ ++IIDL + P Sbjct: 221 RLMNQDIIDLYDRVPTKAP 239 >gi|75908501|ref|YP_322797.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75702226|gb|ABA21902.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 198 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GNS V+V+ L+ L+ G + F A E+AVK FQ++ L G+V + Sbjct: 135 TLRFGNSGVAVRALQRLLVAKGYAVR---VDGNFGALTETAVKAFQIQRNLSVDGVVGFN 191 Query: 161 TLEAMNV 167 T ++ Sbjct: 192 TWYSLTR 198 >gi|297617690|ref|YP_003702849.1| peptidoglycan-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297145527|gb|ADI02284.1| Peptidoglycan-binding domain 1 protein [Syntrophothermus lipocalidus DSM 12680] Length = 246 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 19/105 (18%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERL--------II 120 I+ +T + Y G R L G+ V L+ RL + Sbjct: 76 IVGPQTYWCLGQPTGKYAQGRVFG------SRTLRRGSRHTDVWILQNRLNAKAKKYAVA 129 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G F E+AVKLFQ G+ G+V T + + Sbjct: 130 LG-----GPADGNFGPKTETAVKLFQGDSGISVDGVVGPVTFDQL 169 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G + + V L+++L+ F E+AV FQ G+ G+ Sbjct: 177 GRNLQKGRNGIDVFALQKKLVALSY--NPGPCDGKFGPKTEAAVIKFQKDAGIAADGIAG 234 Query: 159 SSTLEAMNV 167 T ++ + Sbjct: 235 PQTYYSLGI 243 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 V+ L+ L D F ESAV FQ + G+V T Sbjct: 22 PYTRGTDVKVLQSLLNYFKDPLGIQLLTEDGIFGPKTESAVIKFQQYVQISVDGIVGPQT 81 Query: 162 LEAMNVPVDLRIR 174 + P + Sbjct: 82 YWCLGQPTGKYAQ 94 >gi|254785273|ref|YP_003072701.1| peptidoglycan binding domain containing protein [Teredinibacter turnerae T7901] gi|237686178|gb|ACR13442.1| Peptidoglycan binding domain containing protein [Teredinibacter turnerae T7901] Length = 554 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G + ++ L ++ + D PS F+A + VK+FQ HGL+ G++ Sbjct: 475 SEPLVMGQKNPAIGWLAKQFALL-DERPSPLTDDRFNANLRERVKIFQRTHGLEDDGIIG 533 Query: 159 SSTL 162 + TL Sbjct: 534 ARTL 537 >gi|223984153|ref|ZP_03634304.1| hypothetical protein HOLDEFILI_01597 [Holdemania filiformis DSM 12042] gi|223963885|gb|EEF68246.1| hypothetical protein HOLDEFILI_01597 [Holdemania filiformis DSM 12042] Length = 171 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL G++ + VQ+++ L F A E+ V FQ H L P G + Sbjct: 102 PLEYGDTGLEVQKMQNYLNKLTLPSTPITADGVFGAKTEAKVIAFQNAHSLTPDGKIGEK 161 Query: 161 TLEAMNV 167 T + + Sbjct: 162 TWDKIIA 168 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 6/112 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIIS----GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + G + ++V++++ L + DL +F + E+AV +FQ GL Sbjct: 9 AYVIRRGYTGLAVKKMQHYLNVLRTSYPDLPV-LKEDGSFGSATENAVMIFQKHTGLTAD 67 Query: 155 GMVDSSTLEAMNVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 G++ + T + + + + + G + V L Sbjct: 68 GIIGTLTWDKIIAKYKAAPGPGPDPDPDPGTEQPPLEYGDTGLEVQKMQNYL 119 >gi|308069349|ref|YP_003870954.1| peptidoglycan-binding domain-containing protein [Paenibacillus polymyxa E681] gi|305858628|gb|ADM70416.1| Putative peptidoglycan-binding domain-containing protein [Paenibacillus polymyxa E681] Length = 163 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 40/122 (32%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+S V+ L+ L G + +F + V++ ++ FQ GL G+ S Sbjct: 42 TLRQGDSGGYVRALQANLWAYGQQGDVGKIDGSFGSGVKTGLQNFQRNKGLSADGIAGSG 101 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T M V + + L R ++ N KV TV Sbjct: 102 TWNRMTYNVSIEVPGRSFTLSSSDSSTYYVFYGRNDNNRSMRYAVLYKSNNKVITEGTVF 161 Query: 221 VG 222 Sbjct: 162 YN 163 >gi|289642238|ref|ZP_06474388.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia symbiont of Datisca glomerata] gi|289507972|gb|EFD28921.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia symbiont of Datisca glomerata] Length = 317 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 22/115 (19%) Query: 268 DNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFR-----QDPGKINAMASTKIEFYSRNN- 320 ++ + + D++ V V P F Q A + Sbjct: 203 EHRLRVYDKQQVVVDEPTAVGTGDTPTPGGKFYLTELLQPRNPAGAYGPYAFGLSGFSTT 262 Query: 321 ----------TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 +H T +P L + GC+RV N I L L TP Sbjct: 263 LDSFEGRAPVIGIHGTNQPNLLGQD---VSHGCIRVSNETITRLARLLPLGTPVE 314 >gi|221195274|ref|ZP_03568330.1| cell wall hydrolase/autolysin [Atopobium rimae ATCC 49626] gi|221185177|gb|EEE17568.1| cell wall hydrolase/autolysin [Atopobium rimae ATCC 49626] Length = 309 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 14/149 (9%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDI 88 PI + + +V R D + + ++ P +K + Sbjct: 2 DPITPGSTGAAVEDIQERLV--RLDYVIDDSEREKNTYGPSTAKAVARFRLDHDLSLGED 59 Query: 89 LSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + W L LG+ V++L+ERL I G + + Sbjct: 60 VDTATWMLLVDESYQLGDRTLYLRLPNFHGNDVRQLQERLNILGF--SCGKPDGQYGVHT 117 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 E+AVKLFQ G GM TL+A+ Sbjct: 118 EAAVKLFQESVGELADGMAFQDTLDAIER 146 >gi|254474928|ref|ZP_05088314.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Ruegeria sp. R11] gi|214029171|gb|EEB70006.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Ruegeria sp. R11] Length = 183 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 43/188 (22%) Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 ++ + + G VL + L V + R V VG+ + + I Sbjct: 30 TPQDVRIKKQFEPGQILVLPR--SYYLYFVTERRRARRYGVGVGKAGLE-FTGTATIEAK 86 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 P W +I ++DP+ +D + Sbjct: 87 REWPSWRPTPEMI--------QRDPRAYAR----FVDND--------------------Y 114 Query: 299 RQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN--IIDLD 353 Q GK N + + + F + +TY +H T +P + ++GC+R+ N I+DL Sbjct: 115 IQPGGKSNPLGARALYLFQNGVDTYFRIHGTNKPETIGSS---VSNGCIRMTNEHIVDLY 171 Query: 354 VWLLKDTP 361 + T Sbjct: 172 DRVPIGTV 179 >gi|163791094|ref|ZP_02185514.1| carboxyl-terminal protease [Carnobacterium sp. AT7] gi|159873650|gb|EDP67734.1| carboxyl-terminal protease [Carnobacterium sp. AT7] Length = 496 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + LG+ S V+ L + L G + FD + AV FQ+ L G V Sbjct: 403 SKTYQLGDVSEEVKNLEKVLDALGY--SVDTIDGYFDEATQKAVSQFQIDKKLPVDGKVT 460 Query: 159 SSTLEAMNVPVDLRIR 174 T + + I Sbjct: 461 GETATQLVESLRKLID 476 >gi|84497560|ref|ZP_00996382.1| endopeptidase [Janibacter sp. HTCC2649] gi|84382448|gb|EAP98330.1| endopeptidase [Janibacter sp. HTCC2649] Length = 193 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 21/176 (11%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V L++RL G + + AV Q GL G V S+T +A Sbjct: 2 GDRGPKVLALQQRLSNLGYWLGEP--DGHYGSLTRQAVWALQKSAGLSRDGNVGSATQKA 59 Query: 165 MNVPVDLRIRQ----LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + V + + +NL R ++ + + Y+L G + Sbjct: 60 LANGVRPSTQLSGDGIDINLSRQILMIVRGGEVTYILNTST--------GGGYKYETKKG 111 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM------MALLRQDPQYLKDNN 270 R TP ++ + ++ + + P Y + Sbjct: 112 NTATAR-TPKGTFKVYYTVDGSDEGFLGTMWRPRYFHGGYAVHGSPSIPAYPASHG 166 >gi|312135699|ref|YP_004003037.1| erfk/ybis/ycfs/ynhg family protein [Caldicellulosiruptor owensensis OL] gi|311775750|gb|ADQ05237.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor owensensis OL] Length = 223 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V +++RL G S + + A +E AV L+Q ++ L + + Sbjct: 154 RTIYPGDTGEDVMAVQKRLKELGFYSGS--IDGKYGAALEYAVNLYQKKNKLPVTNKITP 211 Query: 160 STLEAMN 166 L M Sbjct: 212 YLLRKMG 218 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 16/124 (12%) Query: 258 LLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + Y+ I GK V ++ G+ + Sbjct: 39 SIDDSRLYVFKEGILYKSYPISPGKPSTPTPVGTFKIISKDYW-----GEG--FGGRWMG 91 Query: 315 FYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEV 371 R +H T + GCVR+ +++ +L ++ T I Sbjct: 92 LNVRYGKYGIHGTIYESYIGA---HVSKGCVRMLNKDVKELFSYIPIGTTVVISEGIYGE 148 Query: 372 VKTR 375 + Sbjct: 149 FRNG 152 >gi|170756349|ref|YP_001780527.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum B1 str. Okra] gi|169121561|gb|ACA45397.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum B1 str. Okra] Length = 125 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 + + +H T P ++GC+R+ N +I+L + Sbjct: 63 NPGGPFGARWLGLNIPYGDYGIHGTNNPSSIGKS---VSNGCIRMFNNQVIELSNLVPIG 119 Query: 360 T 360 T Sbjct: 120 T 120 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 20/51 (39%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 ++++N +L ++ V V VG+ TP +I NP Sbjct: 16 YHIIINTQTHTLTLFKDNNVYKTYKVAVGKPSTPTPKGTFKIINRAINPGG 66 >gi|32141264|ref|NP_733665.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces coelicolor A3(2)] gi|24430040|emb|CAD55354.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces coelicolor A3(2)] Length = 244 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G S V +L+ R+ + A +AVK FQ +GL G+ Sbjct: 40 RTLSQGASGSDVTQLQIRVAGWVTSGERLSYDGQYGARTAAAVKKFQAAYGLGADGVAGP 99 Query: 160 STLEAM 165 +T + Sbjct: 100 ATFSKI 105 >gi|17231042|ref|NP_487590.1| hypothetical protein all3550 [Nostoc sp. PCC 7120] gi|17132683|dbj|BAB75249.1| all3550 [Nostoc sp. PCC 7120] Length = 208 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 3/93 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 ++ + L G+ VQ L+ +L G + + AV FQ Sbjct: 37 EVAQVSSTSTIGQVVLKPGSQGPDVQTLQTQLKQLGYYSGIA--DGKYGDSTKKAVAKFQ 94 Query: 147 MRH-GLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 G+ D +T + + +L V Sbjct: 95 QAKVFSRVDGVADLATKRILQTALIDNQNKLAV 127 >gi|149202226|ref|ZP_01879199.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. TM1035] gi|149144324|gb|EDM32355.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. TM1035] Length = 184 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPI 330 + + + + + ++ Q G N + S + F + +TY +H T +P Sbjct: 93 WRPTDEMIERDPRTYGRFKGNDY--VQPGGAGNPLGSRALYLFQNGRDTYYRIHGTTQPS 150 Query: 331 LFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++GC+R+ ++ DL + T Sbjct: 151 SIGQS---VSNGCIRMINEHVQDLYDRVPIGTV 180 >gi|126737923|ref|ZP_01753653.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. SK209-2-6] gi|126721316|gb|EBA18020.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. SK209-2-6] Length = 154 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 54/186 (29%), Gaps = 47/186 (25%) Query: 179 NLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRIN 236 + + +G+ +L ++ + ++ R V + T ++++ Sbjct: 7 SFQQQSWQDHFDELGVGCLLADVASRAVHYWGGDGETFRLYPSSVPMSEELTKRGYTKVV 66 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 R NP W S+ ++D P+ Sbjct: 67 RKAKNPTWTPTPSMRERD---------------------------------------PSL 87 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 R G N + S + +H T + R +SGC+ + N + +L Sbjct: 88 PVRMAGGVGNPLGSRGMYLSWP-AYLVHGTHDTRKIG---RQSSSGCIGLYNQHVEELYE 143 Query: 355 WLLKDT 360 + T Sbjct: 144 LVKVGT 149 >gi|87123874|ref|ZP_01079724.1| hypothetical protein RS9917_09701 [Synechococcus sp. RS9917] gi|86168443|gb|EAQ69700.1| hypothetical protein RS9917_09701 [Synechococcus sp. RS9917] Length = 158 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 57/201 (28%), Gaps = 54/201 (26%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + +PV R R V ++ L ++ + + + +G+ V +G Sbjct: 3 LVMPVQGRARPASV-PDQLAVLPAAPSTQIHLDLR--QRRISVLRDGQRFGPWPVAIGDP 59 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 TP ++ + R++PQY K +V Sbjct: 60 KTPTPAGVFQVENM---------------------RKNPQY--------QSTKSGKVHPV 90 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTYMHDTPEPILFNNVVRFETSG 342 G + I F N +H TP P ++G Sbjct: 91 T-----------------GPKAPLGHRWIGFLQQGPNQFGIHGTPWPHWVKIRA-AVSNG 132 Query: 343 CVRVRNI--IDLDVWLLKDTP 361 CVR+ N L + TP Sbjct: 133 CVRMLNAHVQQLFELVDVGTP 153 >gi|209883787|ref|YP_002287644.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] gi|209871983|gb|ACI91779.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] Length = 203 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 51/204 (25%), Gaps = 48/204 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 +L R ++V+ L V+ LR + VGR Q Sbjct: 44 PSAEEEELAPQFKRTMVFYRTTEAPGTIIVSTSERFLYVVQGNGRALRYGIGVGREGFQ- 102 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +I R P W P +I + Sbjct: 103 WKGLLKITRKQEWPDWTPPPEMIARQ---------------------------------- 128 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 P G N M + + Y +H T +P +SGC R+ Sbjct: 129 -----PYLPRFMAGGPGNPMGARALYL--GTTVYRIHGTNQPQTIGT---AVSSGCFRLV 178 Query: 348 NII--DLDVWLLKDTPTWSRYHIE 369 N DL + T R E Sbjct: 179 NADVIDLYERIPVGTKVIVRQKPE 202 >gi|299134200|ref|ZP_07027393.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298590947|gb|EFI51149.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 249 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 44/152 (28%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +++ P L V++ LR V VG+ I+ P W P ++++ Sbjct: 123 VIDTPNKFLYLVQDNGRALRYGVGVGKPGFM-WSGVKTISAKREWPDWTPPAEMLKRR-- 179 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 P+ + G N + + + Sbjct: 180 -------------------------------------PDLPRHMEGGPENPLGARAMYLG 202 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC+R+RN Sbjct: 203 SS-LYRIHGSNEPWTIGTN---VSSGCIRMRN 230 >gi|289768974|ref|ZP_06528352.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces lividans TK24] gi|289699173|gb|EFD66602.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces lividans TK24] Length = 229 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S V +L+ R+ + A +AVK FQ +GL G+ Sbjct: 25 RTLSQGSSGSDVTQLQIRVAGWVTSGERLSYDGQYGARTAAAVKKFQAAYGLGADGVAGP 84 Query: 160 STLEAM 165 +T + Sbjct: 85 ATFSKI 90 >gi|256785081|ref|ZP_05523512.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces lividans TK24] Length = 222 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S V +L+ R+ + A +AVK FQ +GL G+ Sbjct: 18 RTLSQGSSGSDVTQLQIRVAGWVTSGERLSYDGQYGARTAAAVKKFQAAYGLGADGVAGP 77 Query: 160 STLEAM 165 +T + Sbjct: 78 ATFSKI 83 >gi|170759637|ref|YP_001786273.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A3 str. Loch Maree] gi|169406626|gb|ACA55037.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A3 str. Loch Maree] Length = 125 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 + + +H T P ++GC+R+ N +I+L + Sbjct: 63 NPGGPFGARWLGLNIPYGDYGIHGTNNPSSIGKS---VSNGCIRMFNNQVIELSNLVPIG 119 Query: 360 T 360 T Sbjct: 120 T 120 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 ++++N +L ++ V V VG+ TP + +I NP Sbjct: 16 YHIIINTQTHTLTLFKDNNVYKTYKVAVGKPSTPTPKGNFKIINRAINPGG 66 >gi|303241311|ref|ZP_07327816.1| YD repeat protein [Acetivibrio cellulolyticus CD2] gi|302591150|gb|EFL60893.1| YD repeat protein [Acetivibrio cellulolyticus CD2] Length = 2818 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V L++ L+ G L KG+ + + AV+ +Q+R + G Sbjct: 2475 GTVLKVGSKGEDVVILQKELVELGCLTMPKGVEYGYYGNLTQEAVRQYQIRARITVDGKA 2534 Query: 158 DSSTLEAMN 166 T +A+ Sbjct: 2535 GDQTWKALG 2543 >gi|72537711|ref|YP_293741.1| gp28-like protein [Burkholderia phage phi52237] gi|254188181|ref|ZP_04894693.1| putative peptidoglycan binding domain [Burkholderia pseudomallei Pasteur 52237] gi|72398401|gb|AAZ72636.1| gp28-like protein [Burkholderia phage phi52237] gi|157935861|gb|EDO91531.1| putative peptidoglycan binding domain [Burkholderia pseudomallei Pasteur 52237] Length = 270 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKM 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 + +L R Sbjct: 61 YRVLASGQRDPKHLTDADLAR 81 >gi|322807493|emb|CBZ05068.1| protein erfK/srfK precursor [Clostridium botulinum H04402 065] Length = 231 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 11/74 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + ++ + +H T P Sbjct: 68 ATGKSSTPSPIGTWKIINKGTW-------GSSFGGRWMGLNVPWGKYGIHGTNAPNSIGW 120 Query: 335 VVRFETSGCVRVRN 348 + GC+R++N Sbjct: 121 SS---SHGCIRMKN 131 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G V +++ L + + ++S V FQ + + S ++S Sbjct: 162 RPIEPGMRGSDVYEVQKLLKEKKYY--NGDPDGIYGENMKSVVHKFQEDNNIPLSNTINS 219 Query: 160 STLEAMNV 167 S + + V Sbjct: 220 SFYKKLGV 227 >gi|170755984|ref|YP_001782818.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum B1 str. Okra] gi|169121196|gb|ACA45032.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum B1 str. Okra] Length = 231 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 11/74 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + ++ + +H T P Sbjct: 68 ATGKSSTPSPIGTWKIINKGTW-------GSSFGGRWMGLNVPWGKYGIHGTNAPNSIGW 120 Query: 335 VVRFETSGCVRVRN 348 + GC+R++N Sbjct: 121 SS---SHGCIRMKN 131 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G V +++ L + + ++S V FQ + + S ++S Sbjct: 162 RPIEPGMRGSDVYEVQKLLKEKKYY--NDEPDGIYGESMKSVVHKFQEDNNIPLSNTINS 219 Query: 160 STLEAMNV 167 S + + V Sbjct: 220 SFYKKLGV 227 >gi|168183495|ref|ZP_02618159.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Bf] gi|237796634|ref|YP_002864186.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Ba4 str. 657] gi|182673343|gb|EDT85304.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Bf] gi|229263482|gb|ACQ54515.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Ba4 str. 657] Length = 231 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 11/74 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + ++ + +H T P Sbjct: 68 ATGKSSTPSPIGTWKIINKGTW-------GSSFGGRWMGLNVPWGKYGIHGTNAPNSIGW 120 Query: 335 VVRFETSGCVRVRN 348 + GC+R++N Sbjct: 121 SS---SHGCIRMKN 131 Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G V +++ L + + ++S V FQ + + S ++S Sbjct: 162 RPIEPGMRGSDVYEVQKLLKGKKYY--NGEPDGIYGESMKSVVHKFQEDNNIPLSNTINS 219 Query: 160 STLEAMNV 167 S + + V Sbjct: 220 SFYKKLGV 227 >gi|168179172|ref|ZP_02613836.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum NCTC 2916] gi|226950607|ref|YP_002805698.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A2 str. Kyoto] gi|182669937|gb|EDT81913.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum NCTC 2916] gi|226843014|gb|ACO85680.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A2 str. Kyoto] Length = 231 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 11/74 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + ++ + +H T P Sbjct: 68 ATGKSSTPSPIGTWKIINKGTW-------GSSFGGRWMGLNVPWGKYGIHGTNAPNSIGW 120 Query: 335 VVRFETSGCVRVRN 348 + GC+R++N Sbjct: 121 SS---SHGCIRMKN 131 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G V +++ L + + ++S V FQ + + S ++S Sbjct: 162 RPIEPGMRGSDVYEVQKLLKEKKYY--NGDPDGIYGESMKSVVHKFQEDNNIPLSNTINS 219 Query: 160 STLEAMNV 167 S + + V Sbjct: 220 SFYKKLGV 227 >gi|88703621|ref|ZP_01101337.1| general secretion pathway protein A [Congregibacter litoralis KT71] gi|88702335|gb|EAQ99438.1| general secretion pathway protein A [Congregibacter litoralis KT71] Length = 560 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G+ V R+ L D + FD +E+ VKLFQ + GL G++ Sbjct: 470 GRTLQRGDRGDDVARVAA-LFARLDGQIQPLTEMLFDPRLEARVKLFQQQQGLRADGVLG 528 Query: 159 SSTLEAMNVPVDLRI 173 +TL A+++ V + Sbjct: 529 ENTLRALSLAVGDDL 543 >gi|332974779|gb|EGK11695.1| ErfK/YbiS/YcfS/YnhG family protein [Desmospora sp. 8437] Length = 317 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 42/174 (24%), Gaps = 61/174 (35%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++ VN L + G+ +V GR TP ++ P Sbjct: 52 RPWIEVNKATNRLTLHQAGRAIKSYSVATGRSQSLTPEGTFKVVVKFIKP---------- 101 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 W N + Sbjct: 102 ----------------------------------GWKGIAGGL--------PENPLGERW 119 Query: 313 IEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 I +H T +P +SGCVR+RN +IDL + + T Sbjct: 120 IGIQVNGDRGRTYGIHGTNQPDSIGT---HASSGCVRMRNRDVIDLYNRVPEGT 170 >gi|254520785|ref|ZP_05132841.1| peptidoglycan-binding domain 1 protein [Clostridium sp. 7_2_43FAA] gi|226914534|gb|EEH99735.1| peptidoglycan-binding domain 1 protein [Clostridium sp. 7_2_43FAA] Length = 605 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD----LDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P L +G+ + +V+ ++E+L + F E +VK+FQ L P Sbjct: 324 PGYSLRIGDVNENVKVIQEQLNRVSKNFPAIPRIYPEDGRFGKETEDSVKVFQRVFNLTP 383 Query: 154 SGMVDSSTLEAMN 166 G+V +T ++ Sbjct: 384 DGVVGRATWYKIS 396 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 14/81 (17%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLD--------PSKGLSVAFDAYVESAVKL 144 G + P L G V+ L+ G L P+ + F + A+ Sbjct: 429 GDGKYPGYLLKYGARGEKVRELQ------GYLSEISKSYNIPNVSVDGIFGNVTKDAIIK 482 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ GL G+V +T + Sbjct: 483 FQRLFGLSTDGIVGLATWNKV 503 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 6/72 (8%) Query: 98 PIRPLHLGNSSVSVQRLRERLI----ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P L G+ V+ ++ L G P+ F AV FQ L Sbjct: 527 PGYLLKYGSRGEKVKEVQYYLASISNQIG--IPTIAADGIFGNATREAVVAFQKLFALSL 584 Query: 154 SGMVDSSTLEAM 165 G++ T + Sbjct: 585 DGIIGQYTWNKI 596 >gi|299134009|ref|ZP_07027202.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298590756|gb|EFI50958.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 203 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 53/202 (26%), Gaps = 48/202 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 +L R ++V+ L V+ LR + VGR Q Sbjct: 44 PSEAEEELPPEFKRTTVFYRTTEPPGTIIVSTSERFLYVVQGNGRALRYGIGVGREGFQ- 102 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +I+R P W P +IQ+ Sbjct: 103 WQGLLKISRKQEWPDWTPPPEMIQRQ---------------------------------- 128 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 P G N M + + S Y +H T +P +SGC R+ Sbjct: 129 -----PYLPRFMAGGPGNPMGARALYLGS--TVYRIHGTNQPQTIGT---AVSSGCFRLV 178 Query: 348 NII--DLDVWLLKDTPTWSRYH 367 N DL + T R Sbjct: 179 NADIIDLYDRIPVGTKVVVRQK 200 >gi|299133154|ref|ZP_07026349.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298593291|gb|EFI53491.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 174 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 47/169 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V L + + + +R V VG+ ++ +RI+ NP W P + + Sbjct: 44 IVVKTSERRLYLILDEQHAIRYPVGVGKRGKE-WAGETRISGKYRNPAWSPPDDVKR--- 99 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIE 314 + PN + G N M + Sbjct: 100 ------------------------------------DHPNIPDVIEGGSPRNPMGVAAMT 123 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 +H T P + + GCVR+ N DL + TP Sbjct: 124 LAGGQ-YAIHGTNVPKSVG---GYVSYGCVRMYNPDITDLFERVSVGTP 168 >gi|89099360|ref|ZP_01172237.1| hypothetical protein B14911_22317 [Bacillus sp. NRRL B-14911] gi|89085969|gb|EAR65093.1| hypothetical protein B14911_22317 [Bacillus sp. NRRL B-14911] Length = 170 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 289 NSPEPPNFIFR-QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 P +++ ++P + + +H T P + GCVR+ Sbjct: 94 TQTPPGDYVIVNREPNPGGPFGIMWLSLS-KAGYGIHGTNNPASIGK---AVSKGCVRMN 149 Query: 348 NIIDL 352 N L Sbjct: 150 NQDVL 154 >gi|90426193|ref|YP_534563.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90108207|gb|ABD90244.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 265 Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 44/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ P L V+ LR + VGR T +I+ P W P ++ + Sbjct: 138 IVIDTPNKFLFLVQGDGTALRYGIGVGRPG-FTWSGVKQISAKKEWPAWTPPPEMLARR- 195 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ + G N + + + Sbjct: 196 --------------------------------------PDLPRHMEGGPQNPLGARAMYL 217 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H + EP +SGC+R+RN Sbjct: 218 G-STLYRIHGSNEPWTIGTN---VSSGCIRMRN 246 >gi|311030560|ref|ZP_07708650.1| hypothetical protein Bm3-1_08466 [Bacillus sp. m3-13] Length = 352 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 + G + V L+ RL +G + + AVK FQ GLD G+V Sbjct: 34 IQKGATGNDVVELQARLQYNGYYH--ARIDGVYGWSTYWAVKNFQQEFGLDHVDGLVGPK 91 Query: 161 TLEAMNV 167 T E + Sbjct: 92 TKEMLQK 98 >gi|194015644|ref|ZP_03054260.1| N-acetylmuramoyl-L-alanine amidase XlyB (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] gi|194013048|gb|EDW22614.1| N-acetylmuramoyl-L-alanine amidase XlyB (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] Length = 267 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 15/125 (12%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH---LGN 106 D+F +A G S + E+++ + +++ LP L Sbjct: 147 DQFKAGIATARTGSKSTRKPVRTESLSH--------KAPVTKQKSSNLPSGILKITKPLT 198 Query: 107 SSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V +++ L + G+ + + +AVK FQ+ +GL G+ T Sbjct: 199 KGPQVIAVQKALSSLYFYPDKGAKNNGIDGYYGSKTANAVKRFQLMNGLAADGIYGPKTK 258 Query: 163 EAMNV 167 + Sbjct: 259 NKIER 263 >gi|307317204|ref|ZP_07596645.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306897292|gb|EFN28037.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] Length = 193 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 44/191 (23%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ R + ++VN L V+ G +R + VG R Sbjct: 31 SPQSARTRIDPRYRRQEVAYYGGEAPGTIVVNTGERYLYYVQGGGSAIRYGIGVGEEGR- 89 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T ++I R P W ++I++ L Q Sbjct: 90 TLKGRAKIGRKAEWPSWTPTANMIRRK--PHLAQ-------------------------- 121 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCV 344 + G N + + + + +H T EP +SGC+ Sbjct: 122 --------YAGGVSGGLHNPLGAAALYLYQGGNDTMFRLHGTNEPWTIGQ---AVSSGCI 170 Query: 345 RVRNIIDLDVW 355 R+ N D+ Sbjct: 171 RLTN-DDIVDL 180 >gi|226358218|ref|YP_002787957.1| peptidoglycan-binding domain 1 protein [Deinococcus deserti VCD115] gi|226319861|gb|ACO47855.1| putative peptidoglycan-binding domain 1 protein [Deinococcus deserti VCD115] Length = 241 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I+ W +L + G+S+ +V+ ++++L +G S + F + SAV+ FQ Sbjct: 4 GIVGGNTWEKLIA-TVQQGDSNTAVRAVQDQL-RNGYGYGSVTIDGVFGSGTNSAVRDFQ 61 Query: 147 MRHGLDPSGMVDSSTLEAM 165 + GL G+V +T ++ Sbjct: 62 SKRGLGVDGVVGLNTWHSL 80 >gi|241203830|ref|YP_002974926.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857720|gb|ACS55387.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 204 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 43/182 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E V+V+ PA V G +R V VGR Sbjct: 42 QVPIDKIKPELRRQEVAYETTHAAGTVIVDTPARRAYYVLGGGRAVRYGVGVGREG-LAF 100 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 ++ I R P W ++ +++ Sbjct: 101 AGNAYIGRKAEWPSWTPTENMQRRE----------------------------------- 125 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + Y +H T +P +SGCVR+ Sbjct: 126 -ERYRKLAGGMPGGPNNPLGARAMYLYRGGGDTHFRIHGTNQPQSIG---LAMSSGCVRM 181 Query: 347 RN 348 N Sbjct: 182 MN 183 >gi|328543217|ref|YP_004303326.1| ErfK/YbiS/YcfS/YnhG superfamily [polymorphum gilvum SL003B-26A1] gi|326412963|gb|ADZ70026.1| ErfK/YbiS/YcfS/YnhG superfamily [Polymorphum gilvum SL003B-26A1] Length = 173 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 7/95 (7%) Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPE 328 ID K + + P+ G N M + ++ +H T Sbjct: 78 GQTYIDGKYVKPAWSPPAVVKRDFPDLPDVIAGGAPNNPMGVAALTLA-GDDYAIHGTNR 136 Query: 329 PILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 P R + GC+R+RN I+DL + +TP Sbjct: 137 PGSIG---RAVSYGCIRMRNGDILDLFNRVGLNTP 168 >gi|295314812|gb|ADF97556.1| PlyM31 [uncultured phage] Length = 357 Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ + L G++ +V+ L+ L +G L + F E+AVK FQ Sbjct: 205 AAKPAPSTVKRDYLLDGDTGAAVKTLQSELKQAGFL---LSVDGIFGKGTETAVKAFQRA 261 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ + + +N Sbjct: 262 NGLAVDGVFGTGSQAKLNA 280 >gi|218782967|ref|YP_002434285.1| peptidoglycan-binding domain 1 protein [Desulfatibacillum alkenivorans AK-01] gi|218764351|gb|ACL06817.1| Peptidoglycan-binding domain 1 protein [Desulfatibacillum alkenivorans AK-01] Length = 616 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ V +++ LI G S + A+K FQ G+ G+ +T+ Sbjct: 546 LGDKGPLVNWIQDVLIHGGY---SLSKDGVYGPRTSKAIKSFQTDFGIRADGVAGPTTI 601 >gi|218509595|ref|ZP_03507473.1| hypothetical protein RetlB5_19948 [Rhizobium etli Brasil 5] Length = 204 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 45/190 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E ++V+ PA V +R V VGR Sbjct: 42 QVPIDKIKPELRRQEVAYETTHAAGTIVVDTPARRAYYVLGDGRAMRYGVGVGREG-LAF 100 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + I R P W ++ +++ Sbjct: 101 AGDAYIGRKAEWPSWTPTENMRRRE----------------------------------- 125 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + Y +H T +P +SGC+R+ Sbjct: 126 -ERYRKLAGGMPGGPNNPLGARAMYLYRGGGDTHFRIHGTNQPQSIG---LAMSSGCIRM 181 Query: 347 --RNIIDLDV 354 ++IDL Sbjct: 182 MNHDVIDLYD 191 >gi|62391939|ref|YP_227341.1| N-acetymuramyl-L-alanine amidase [Corynebacterium glutamicum ATCC 13032] gi|41223086|emb|CAF19031.1| N-ACETYMURAMYL-L-ALANINE AMIDASE [Corynebacterium glutamicum ATCC 13032] Length = 403 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 13/81 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK-------------GLSVAFDAYVESAVKLF 145 + L +G+ S V +R L G ++ FD + ++K F Sbjct: 9 SKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSF 68 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q G+ PSG++D TL A+ Sbjct: 69 QQARGVVPSGLIDDPTLRAIR 89 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 101 PLHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 GN V ++ L G + F AV +Q+ +G+ G+ Sbjct: 101 AYQPGNQLVGDDVVEIQSHLQELGFYA--DRVDGHFGELTHKAVMNYQLNYGMQVDGICG 158 Query: 159 SSTLEAMNV 167 T+ A++ Sbjct: 159 PDTIRALSR 167 >gi|126653377|ref|ZP_01725481.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. B14905] gi|126589893|gb|EAZ84024.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. B14905] Length = 277 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 4/87 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + F A++ FQ ++GL G Sbjct: 26 AFSDQQITRGAYGDDVIELQARLQYLGFYKS--KIDGKFGYNTYWALRNFQEKYGLPVDG 83 Query: 156 MVDSSTLE--AMNVPVDLRIRQLQVNL 180 + + T + A D + + Q+N Sbjct: 84 IAGAKTKKTIAGYSDYDEKWVKAQLNA 110 >gi|152974458|ref|YP_001373975.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023210|gb|ABS20980.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cytotoxicus NVH 391-98] Length = 253 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + + ++ PG N + + + + +H T R E++GC+R+ Sbjct: 67 NKYKNKEYHRKKIPGGAPNNPLGTRWLGL-NEKEYAIHGTNREGTIG---RRESNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|218460779|ref|ZP_03500870.1| hypothetical protein RetlK5_15296 [Rhizobium etli Kim 5] Length = 104 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + + Q+ G+ N + + + R+ + +H T +P + +SGC+R Sbjct: 1 EAAKGHIIPAYQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGLNM---SSGCIR 57 Query: 346 VRNII 350 + N Sbjct: 58 MMNAD 62 >gi|148239504|ref|YP_001224891.1| hypothetical protein SynWH7803_1168 [Synechococcus sp. WH 7803] gi|147848043|emb|CAK23594.1| Uncharacterized conserved secreted protein [Synechococcus sp. WH 7803] Length = 157 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 52/164 (31%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 Q + + +++ L ++NGKV R V +G + TP I Sbjct: 23 PMQARAEKTIEISLKQRYLTLLDNGKVVERFPVAIGAPESPTPSGSYAIT---------- 72 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +K+ + + GK + PG N Sbjct: 73 -----RKEEAP---------------VYHKGGKVI-------------------APGPKN 93 Query: 307 AMASTKI-EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 + + F + Y +H T P + + GC+R+ N Sbjct: 94 PVGVRYMAYFQIGSGEYAIHGTAWPNWV-KLRAAVSLGCIRMLN 136 >gi|160878697|ref|YP_001557665.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427363|gb|ABX40926.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 464 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L +G+S SV +L+E+L D+ P+ F +AVK FQ + L Sbjct: 378 SFPGYNLTIGSSGSSVMQLQEQLNAIADVYYPIPNVSADGIFGPATAAAVKAFQKQFNLP 437 Query: 153 PSGMVDSSTLEAMN 166 SG+VD T ++ Sbjct: 438 QSGIVDLPTWYKIS 451 >gi|309389082|gb|ADO76962.1| Peptidase M23 [Halanaerobium praevalens DSM 2228] Length = 434 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + L + V ++ L I G + F E A K FQ + L G Sbjct: 23 SVSAFQVKLNDRGKEVIEAQKHLEILGY---EVAIDGIFGKSTEDAAKKFQAENNLQVDG 79 Query: 156 MVDSSTLEAMNVPVDLRI 173 ++ TL + + ++ Sbjct: 80 IIGGKTLSLLKEMISEKV 97 >gi|218133257|ref|ZP_03462061.1| hypothetical protein BACPEC_01122 [Bacteroides pectinophilus ATCC 43243] gi|217992130|gb|EEC58134.1| hypothetical protein BACPEC_01122 [Bacteroides pectinophilus ATCC 43243] Length = 417 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L + G+ S + + AV+ FQ L + Sbjct: 333 PGSNLDIGSSGSKVRQIQEQLNLIGEFYSSIPVLIPDGIYGERTADAVRAFQKIFRLPQT 392 Query: 155 GMVDSSTL 162 G+VD T Sbjct: 393 GIVDYPTW 400 >gi|220921868|ref|YP_002497169.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219946474|gb|ACL56866.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 192 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 55/201 (27%), Gaps = 50/201 (24%) Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 P + + M + + R ++V L V + Sbjct: 22 PDPALSAQDAAWMAMVPEAEADP---RFARYLTDDPTGEPPGTIVVETKERQLYYVLPDR 78 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 +R V VG +R+ R P W P ++++ Sbjct: 79 KAVRYGVTVGDEA-YGWTGTARVFRKAAWPDWNPPAEMVKR------------------- 118 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEP 329 W P G N + + + +R+ Y +H T EP Sbjct: 119 ---------------WPHVHPMK------GGPENPLGARALYLADGNRDTLYRIHGTNEP 157 Query: 330 ILFNNVVRFETSGCVRVRNII 350 +SGC+R+RNI Sbjct: 158 ERIGQ---AASSGCIRMRNID 175 >gi|288556068|ref|YP_003428003.1| spore cortex-lytic enzyme [Bacillus pseudofirmus OF4] gi|288547228|gb|ADC51111.1| spore cortex-lytic enzyme [Bacillus pseudofirmus OF4] Length = 348 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G + V L+ RL G + + + AV+ +Q GLD G Sbjct: 31 AFTDQVIQQGATGDDVVELQSRLQYIGFY--NGKIDGVYGWGTYWAVRNYQYEFGLDIDG 88 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 +V E + + + ++ L +K Sbjct: 89 LVGPEMKEMLAKSTEYNEQFVKRALNEGRKFT 120 >gi|85374415|ref|YP_458477.1| putative bacteriophage-acquired protein [Erythrobacter litoralis HTCC2594] gi|84787498|gb|ABC63680.1| putative bacteriophage-acquired protein [Erythrobacter litoralis HTCC2594] Length = 343 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 56/190 (29%), Gaps = 24/190 (12%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 L I AS LD+ E F + A + A Sbjct: 142 LDAFVAFIKASRLDD---ELRRHDW-KAFARGY-NGPEYWKNKYDTKMARAFATFSEGGA 196 Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 + P R + +G+ SV L+E L ++ F +SAV Sbjct: 197 RTDN----------PQRVIRMGDKGQSVMHLQELLGLT--------KDGDFGPGTKSAVI 238 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 FQ + L P G+V T A+ + + + ++ + V Sbjct: 239 KFQKKAKLHPDGIVGGQTWAALLADTAAKPTTKRGKQDLAQRSRAPLRLHDKGDDVKFLQ 298 Query: 203 ASLEAVENGK 212 L +E+G Sbjct: 299 KLLGLIEDGD 308 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 28/118 (23%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIR--------------------PLHLGNS 107 P I +KA I+ W L PL L + Sbjct: 231 PGTKSAVIKFQKKAKLHPDGIVGGQTWAALLADTAAKPTTKRGKQDLAQRSRAPLRLHDK 290 Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L++ L + D F + VK FQ +GL G+V +T + Sbjct: 291 GDDVKFLQKLLGLIED--------GDFGPATLARVKKFQQENGLVDDGIVGRNTWARL 340 >gi|23309016|ref|NP_602284.2| N-acetylmuramoyl-L-alanine amidase [Corynebacterium glutamicum ATCC 13032] gi|21325865|dbj|BAC00486.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium glutamicum ATCC 13032] Length = 414 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 13/81 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK-------------GLSVAFDAYVESAVKLF 145 + L +G+ S V +R L G ++ FD + ++K F Sbjct: 20 SKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSF 79 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q G+ PSG++D TL A+ Sbjct: 80 QQARGVVPSGLIDDPTLRAIR 100 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 101 PLHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 GN V ++ L G + F AV +Q+ +G+ G+ Sbjct: 112 AYQPGNQLVGDDVVEIQSHLQELGFYA--DRVDGHFGELTHKAVMNYQLNYGMQVDGICG 169 Query: 159 SSTLEAMNV 167 T+ A++ Sbjct: 170 PDTIRALSR 178 >gi|298293120|ref|YP_003695059.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296929631|gb|ADH90440.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 170 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 42/154 (27%), Gaps = 44/154 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V+ L V +R V VGR +Q RI+ P W P I + Sbjct: 40 IVVSARERRLYLVTGPGKAIRYPVAVGRRGKQ-WQGQVRISGKYVEPAWSPPAEIKR--- 95 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI-NAMASTKIE 314 + P G N M + + Sbjct: 96 ------------------------------------DNPKLPDVIPGGTRANPMGARAMT 119 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T +P F + GCVR+ N Sbjct: 120 LSGGGQYAIHGTNQPRSIGT---FASYGCVRMYN 150 >gi|323139215|ref|ZP_08074270.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322395513|gb|EFX98059.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 275 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 74/284 (26%), Gaps = 76/284 (26%) Query: 92 GGWPELPIRPLHL--------GNSSVSVQRLRERLIISGDLDPSKGLSVA---FDAYVES 140 G +P P P+ G S G +P ++ +E Sbjct: 30 GAYPAYPSSPVRPYADQGGVYGESDPD----------DGYYEPPTRRPPRADAYERNLED 79 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI-------KKLLEQKMGL 193 + + R P G A P ++L + L++ G Sbjct: 80 YPEDAEPRARAKPRGAEGRRARIAALPPDADPAYSTPIDLDDQVDPNQSTRTLVDDPTGQ 139 Query: 194 RYVL--VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 R ++ A L L V VGR + ++I R + P W P ++ Sbjct: 140 RAGTLTIDTGARKLYLSLGNGEALEYGVGVGRQGFE-WKGVAQIGRKAYWPGWTPPSEML 198 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 + P+ + G N + + Sbjct: 199 LRR---------------------------------------PDLPEHMEGGLDNPLGAR 219 Query: 312 KIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +H T EP +SGC+R+ N + Sbjct: 220 ALYLFEGPKDTMFRIHGTNEPDTIGK---AVSSGCIRMLNADVI 260 >gi|148378889|ref|YP_001253430.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 3502] gi|153933529|ref|YP_001383270.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 19397] gi|153934554|ref|YP_001386819.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. Hall] gi|148288373|emb|CAL82450.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929573|gb|ABS35073.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 19397] gi|152930468|gb|ABS35967.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. Hall] gi|322805217|emb|CBZ02781.1| protein erfK/srfK precursor [Clostridium botulinum H04402 065] Length = 125 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 + + +H T P ++GC+R+ N +I+L + Sbjct: 63 NPGGPFGARWLGLNIPYGDYGIHGTNNPSSIGKS---VSNGCIRMFNNQVIELSNLVPIG 119 Query: 360 T 360 T Sbjct: 120 T 120 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 ++++N +L V V VG+ TP + +I NP Sbjct: 16 YHIIINTQTHTLTLFRGNNVYRTYKVAVGKPSTPTPKGNFKIINRAINPGG 66 >gi|56963516|ref|YP_175247.1| hypothetical protein ABC1751 [Bacillus clausii KSM-K16] gi|56909759|dbj|BAD64286.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 171 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 9/66 (13%) Query: 290 SPEPPNFIFRQDPG--KINAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGC 343 E P + + PG N + S I F + +H T P ++GC Sbjct: 74 KVEQPYYRKKNIPGGDARNPLGSRWIGFDALGTAGRTYGLHGTNRPGSIGYS---ASAGC 130 Query: 344 VRVRNI 349 +R+ N Sbjct: 131 IRLANP 136 >gi|86751770|ref|YP_488266.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86574798|gb|ABD09355.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 201 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 52/193 (26%), Gaps = 48/193 (24%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L + ++V L V+ LR + VGR Q +I+R Sbjct: 53 LRKQMVFFRTSEPAGTIVVQTAERYLYLVQGNNRALRYGIGVGREGFQ-WQGLLKISRKA 111 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P WV P +IQ+ P Sbjct: 112 EWPDWVPPPEMIQRQ---------------------------------------PYLPRF 132 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 G N + + + S Y +H T P +SGC R+ N DL + Sbjct: 133 MAGGPGNPLGARAMYLGS--TIYRIHGTNRPDTIGT---AISSGCFRLVNADVADLYERV 187 Query: 357 LKDTPTWSRYHIE 369 T R E Sbjct: 188 PVGTKVVVRQRPE 200 >gi|150014928|ref|YP_001307182.1| peptidoglycan binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149901393|gb|ABR32226.1| Peptidoglycan-binding domain 1 protein [Clostridium beijerinckii NCIMB 8052] Length = 1061 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERL--IISGD-LDPSKGLSVAFDAYVESAVKLFQM 147 G P PL +G+S +V+ ++ +L I L P F+ AVK FQ Sbjct: 937 SGSPQSYPGEPLTIGSSGPAVRTIQNQLNRIARNYPLIPKVAEDGQFNQKTADAVKTFQQ 996 Query: 148 RHGLDPSGMVDSSTLEAMN---VPVDLRIRQLQVNLMRIKKLLEQKMGL 193 L +G+VD +T ++ V V +++R + + + Sbjct: 997 IFTLPQTGIVDYATWYRISDIYVGVSRIAELRDSSMLRSSLGMNEFIPP 1045 >gi|312127038|ref|YP_003991912.1| erfk/ybis/ycfs/ynhg family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777057|gb|ADQ06543.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V ++ RL G S + + A +E AV L+Q ++ L + + Sbjct: 154 RTIYPGDTGEDVMAVQRRLKELGFYSGS--IDGKYGAALEYAVNLYQKKNKLPVTNKITP 211 Query: 160 STLEAMN 166 L M Sbjct: 212 YLLRKMG 218 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 16/109 (14%) Query: 258 LLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + Y+ I GK V ++ G+ + Sbjct: 39 SIDDSRLYVFKEGILYKSYPISPGKPSTPTPVGTFKIISKDYW-----GEG--FGGRWMG 91 Query: 315 FYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 R +H T + GCVR+ +++ +L ++ T Sbjct: 92 LNVRYGKYGIHGTIYESYIGA---HVSKGCVRMLNKDVKELFSYIPIGT 137 >gi|295696513|ref|YP_003589751.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus tusciae DSM 2912] gi|295412115|gb|ADG06607.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus tusciae DSM 2912] Length = 216 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 12/87 (13%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVV 336 G+ + + + + Y +H T P Sbjct: 60 GRPDSPTPIGHWKVINKYKNW------GGGFGTRWLGLNVPWGIYGIHGTNRPHSIGWS- 112 Query: 337 RFETSGCVRVRN--IIDLDVWLLKDTP 361 ++GC+R+RN + +L + TP Sbjct: 113 --ASAGCIRMRNQDVEELYEMIRVGTP 137 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V +++RL G + F ++A+K F+ L G+V Sbjct: 149 RRLKDGDIGTDVWLVQDRLRRLGFY--RGPCNGRFSLSTQAALKAFERSQHLPVDGVVSV 206 Query: 160 STLEAMN 166 A+ Sbjct: 207 RDYHALG 213 >gi|86356808|ref|YP_468700.1| hypothetical protein RHE_CH01168 [Rhizobium etli CFN 42] gi|86280910|gb|ABC89973.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 244 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + Q+ R + L ++V+ P+ L V+ + +R V +GR Sbjct: 79 PAVPYEQIDPRYYRQRVLDPTGQPPGTIVVDTPSRFLYLVQADGMAMRYGVGIGREGFA- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + E V + Sbjct: 138 WQGSGVIQWRQKWPRWKPPNEMVARQ----------------------------PELVKY 169 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVR 345 + +PG N + + + F + + Y +H P+ +SGCVR Sbjct: 170 SIENGGM-----EPGLKNPLGARALYIFSNGEDTLYRLHGNPDWRSIGK---AVSSGCVR 221 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 222 LLNQDIIDLYDRVPTKAP 239 >gi|168178292|ref|ZP_02612956.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum NCTC 2916] gi|168184118|ref|ZP_02618782.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Bf] gi|226948166|ref|YP_002803257.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A2 str. Kyoto] gi|237794190|ref|YP_002861742.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Ba4 str. 657] gi|182670899|gb|EDT82873.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum NCTC 2916] gi|182672811|gb|EDT84772.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Bf] gi|226841594|gb|ACO84260.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A2 str. Kyoto] gi|229261214|gb|ACQ52247.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Ba4 str. 657] Length = 125 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 + + +H T P ++GC+R+ N +I+L + Sbjct: 63 NPGGPFGARWLGLNIPYGDYGIHGTNNPSSIGKS---VSNGCIRMFNNQVIELSNLVPIG 119 Query: 360 T 360 T Sbjct: 120 T 120 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +++N A +L N V V VG+ TP +I NP Sbjct: 16 YRIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINRAINPGG 66 >gi|153941218|ref|YP_001390250.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. Langeland] gi|152937114|gb|ABS42612.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. Langeland] gi|295318345|gb|ADF98722.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. 230613] Length = 125 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 + + +H T P ++GC+R+ N +I+L + Sbjct: 63 NPGGPFGARWLGLNIPYGDYGIHGTNNPSSIGKS---VSNGCIRMFNNQVIELSNIVPIG 119 Query: 360 T 360 T Sbjct: 120 T 120 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 ++++N A +L ++ V V VG+ TP +I NP Sbjct: 16 YHIIINTQAHTLTLFKDNNVYKTYKVAVGKPSTPTPKGTFKIINRAINPGG 66 >gi|158321448|ref|YP_001513955.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus oremlandii OhILAs] gi|158141647|gb|ABW19959.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus oremlandii OhILAs] Length = 254 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ V ++ RL G D L + ++E A+ FQ H + + ++ T + Sbjct: 188 PGDFGADVLEIQNRLRAYGYYDVE-HLDGKYGPHMEQALYQFQKDHNIPKNPHIEYDTYK 246 Query: 164 AMNV 167 A+ V Sbjct: 247 ALGV 250 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 16/123 (13%) Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPNFIFRQ 300 ++ + + YL + N + GK + Sbjct: 55 ITDNPEYEDIRVLIDISEKRLYLMNGNDLVKIYPVATGKLDTPTPIGTWKVVHKAKW--- 111 Query: 301 DPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLL 357 + + +H T +P + ++GCVR+ N + DL ++ Sbjct: 112 ----GGGFGTRWMGLNVPWGTYGIHGTNKPNSIGSN---ASAGCVRMNNTDVEDLYKYVK 164 Query: 358 KDT 360 +T Sbjct: 165 HNT 167 >gi|154246416|ref|YP_001417374.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] gi|154160501|gb|ABS67717.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] Length = 200 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 66/229 (28%), Gaps = 61/229 (26%) Query: 150 GLDPSGMVDSSTLEAMNVPVD-LRIRQLQVN-----------LMRIKKLLEQKMGLRYVL 197 GL SG + T R +QL N R ++ Sbjct: 12 GLMLSGCMS-ETYAPAPESAQTARDKQLLANKPYPNVKPSGDYARHIVEYPTNKKPGTIV 70 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 ++ P L VE +R V VG +++ R P W I Q Sbjct: 71 IDTPNKFLYYVEGNGKAIRYGVTVGEES-LAFRGQAKVGRKAEWPSWTPTPEIHQ----- 124 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF-- 315 + P Y+ PG N M + + Sbjct: 125 RIAGLPSYVA----------------------------------PGPHNPMGARALYLYQ 150 Query: 316 YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 +++ + +H T +P +SGC+R+ ++IDL + T Sbjct: 151 GNQDTLFRIHGTNQPEYLGQ---AISSGCIRMLNEDVIDLYSRVPTGTE 196 >gi|302872405|ref|YP_003841041.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor obsidiansis OB47] gi|302575264|gb|ADL43055.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor obsidiansis OB47] Length = 223 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V ++ RL G S + + A +E AV L+Q ++ L + + Sbjct: 154 RTIYPGDTGEDVMAVQRRLKKLGFYSGS--IDGKYGAALEYAVNLYQKKNKLPVTNKITP 211 Query: 160 STLEAMN 166 L M Sbjct: 212 YLLRKMG 218 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 16/124 (12%) Query: 258 LLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + Y+ I GK V ++ G+ + Sbjct: 39 SIDDSRLYVFKEGILYKSYPISPGKPSTPTPVGTFKIISKDYW-----GEG--FGGRWMG 91 Query: 315 FYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEV 371 +H T + GCVR+ +++ +L ++ T I Sbjct: 92 LNVVYGKYGIHGTIYENYIGA---HVSKGCVRMLNKDVKELFSYISVGTTVVISEGIYGE 148 Query: 372 VKTR 375 + Sbjct: 149 FRNG 152 >gi|190891021|ref|YP_001977563.1| hypothetical protein RHECIAT_CH0001405 [Rhizobium etli CIAT 652] gi|190696300|gb|ACE90385.1| hypothetical conserved protein [Rhizobium etli CIAT 652] gi|327192851|gb|EGE59776.1| hypothetical protein RHECNPAF_189002 [Rhizobium etli CNPAF512] Length = 204 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 45/190 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E ++V+ PA V +R V VGR Sbjct: 42 QVPIDKIKPELRRQEVAYETTHAAGTIVVDTPARRAYYVLGDGRAMRYGVGVGREG-LAF 100 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + I R P W ++ +++ Sbjct: 101 AGDAYIGRKAEWPSWTPTENMQRRE----------------------------------- 125 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + Y +H T +P +SGC+R+ Sbjct: 126 -ERYRKLAGGMPGGPNNPLGARAMYLYRGGGDTHFRIHGTNQPQSIG---LAMSSGCIRM 181 Query: 347 --RNIIDLDV 354 ++IDL Sbjct: 182 MNHDVIDLYD 191 >gi|158422818|ref|YP_001524110.1| ErfK/YbiS/YcfS/YnhG precursor [Azorhizobium caulinodans ORS 571] gi|158329707|dbj|BAF87192.1| ErfK/YbiS/YcfS/YnhG precursor [Azorhizobium caulinodans ORS 571] Length = 200 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 65/221 (29%), Gaps = 59/221 (26%) Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR---YVLVNIPA---- 202 G+ +G + A + R +QL N K E + + Y P Sbjct: 12 GIVLAGCQTNQLQPAPEASLKPRDKQLLANAPYPKVKPEGEFARQIVSYSGKEKPGTIVV 71 Query: 203 ----ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 L V+ +R V VG +++ R P W I Q Sbjct: 72 DTDKRMLYYVQGDGTAIRYGVTVGEES-LAFRGEAKVGRKAEWPSWTPTPEIHQ-----R 125 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--Y 316 + P Y+ G N M + + Sbjct: 126 IAGLPSYVN----------------------------------GGPQNPMGARALYLYQG 151 Query: 317 SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 +R+ + +H T +P L +SGC+R+ ++IDL Sbjct: 152 NRDTLFRIHGTNQPELLGQ---AISSGCIRMLNEDVIDLFN 189 >gi|91978152|ref|YP_570811.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91684608|gb|ABE40910.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 193 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 46/167 (27%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + K ++++ L VE LR + VGR D RI Sbjct: 51 RERVNFIGKYAPGTIVISTAERRLYLVEPDGTALRYGIGVGR-DGFRWAGTHRITAKKEW 109 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 110 PSWTPPAQMLRRR---------------------------------------PDLPRHMA 130 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G+ N + + + +H + EP +SGC R+ N Sbjct: 131 GGEDNPLGARAMYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTN 173 >gi|288554783|ref|YP_003426718.1| murein binding protein [Bacillus pseudofirmus OF4] gi|288545943|gb|ADC49826.1| murein binding protein [Bacillus pseudofirmus OF4] Length = 165 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 59/169 (34%), Gaps = 12/169 (7%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 Y + +P +L ++ I+ P + I+ P P I Sbjct: 1 MYQHIVLPGETLFSISED-YRTPYQAILAANQIPNPNMIYVGQPIVI-PGIPDPALIPYF 58 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 +++ + ++ + + + V + +++P I ++P + + Sbjct: 59 IDVSISNRTLSLYENEQLQKVY----PIAVGRMLYDTPVGEFIIVNREPNPGGPFGTLWL 114 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 + + +H T +P + + GC+R+ +++ +L + T Sbjct: 115 SLS-KKSYGIHGTNDPSSIGH---AVSKGCIRMFNQDVEELGSIVPNGT 159 >gi|169827478|ref|YP_001697636.1| spore cortex-lytic enzyme (SCLE) [Lysinibacillus sphaericus C3-41] gi|168991966|gb|ACA39506.1| Spore cortex-lytic enzyme precursor (SCLE) [Lysinibacillus sphaericus C3-41] Length = 277 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 4/87 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + F A++ FQ ++GL G Sbjct: 26 AFSNQQITRGAYGDDVIELQARLQYLGFYKS--KIDGKFGYNTYWALRNFQEKYGLPVDG 83 Query: 156 MVDSSTLE--AMNVPVDLRIRQLQVNL 180 + + T + A D + + Q+N Sbjct: 84 IAGAKTKKTIAGYSDYDEKWVKAQLNA 110 >gi|265996616|ref|ZP_06109173.1| ErfK/YbiS/YcfS/YhnG family protein [Brucella ceti M490/95/1] gi|262550913|gb|EEZ07074.1| ErfK/YbiS/YcfS/YhnG family protein [Brucella ceti M490/95/1] Length = 79 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 4/63 (6%) Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 + + R D G N + + + +H T +P + +SGC+R Sbjct: 2 IARERKKGRFLPARMDGGINNPLGARALYLG-STLYRIHGTNQPWTIGKAM---SSGCIR 57 Query: 346 VRN 348 +RN Sbjct: 58 MRN 60 >gi|254488253|ref|ZP_05101458.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. GAI101] gi|214045122|gb|EEB85760.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. GAI101] Length = 183 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 6/52 (11%) Query: 300 QDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN 348 Q G N + + + F + +TY +H T +P R ++GC+R+ N Sbjct: 116 QPGGPDNPLGARALYLFQNGRDTYFRIHGTTQPSSIG---RSVSNGCIRMIN 164 >gi|83944388|ref|ZP_00956842.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. EE-36] gi|83953429|ref|ZP_00962151.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. NAS-14.1] gi|83842397|gb|EAP81565.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. NAS-14.1] gi|83844711|gb|EAP82594.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. EE-36] Length = 183 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 300 QDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 Q G N + + + F + +TY +H T +P R ++GC+R+ ++ DL Sbjct: 116 QPGGPSNPLGARALYLFQNGRDTYFRIHGTTQPSSIG---RSVSNGCIRMLNEHVKDLYQ 172 Query: 355 WLLKDTP 361 + T Sbjct: 173 RVPIGTK 179 >gi|301058095|ref|ZP_07199147.1| peptidoglycan binding domain protein [delta proteobacterium NaphS2] gi|300447727|gb|EFK11440.1| peptidoglycan binding domain protein [delta proteobacterium NaphS2] Length = 544 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIIS---GDLD-PSKGLSVAFDAYVESAVKLFQMRHG 150 P + L G+S V+ L+ +L D S FD +ES V FQ Sbjct: 456 PPIKSAILKKGDSGPDVRWLKAQLNRVEGGNDPSVSDTAESNVFDDILESRVMNFQRSCA 515 Query: 151 LDPSGMVDSSTLEAMNVP 168 + P G+V TL + P Sbjct: 516 VLPDGIVGEQTLIQLTKP 533 >gi|225018050|ref|ZP_03707242.1| hypothetical protein CLOSTMETH_01986 [Clostridium methylpentosum DSM 5476] gi|224949196|gb|EEG30405.1| hypothetical protein CLOSTMETH_01986 [Clostridium methylpentosum DSM 5476] Length = 456 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V L+ L + G P ++ F AV+ FQ GL + Sbjct: 372 PGYYLTEGASGEDVTNLQTYLALIGRTYTNLPEIPVTGNFGPQTAEAVRAFQRDFGLPVT 431 Query: 155 GMVDSSTLEAMN 166 G V T + + Sbjct: 432 GSVGPVTWQRIA 443 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 16/115 (13%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGL 151 +P P L G S V V+ ++ L + P + F AV+ FQ + Sbjct: 275 TVPYPPTLQEGMSGVEVRTIQYYLSVLSYFYPEIPFVQIDGIFGPATREAVQAFQRMVNI 334 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 G+V + T + I L G + P L Sbjct: 335 PSDGIVGAQTWNNLQRVYYDVINSL----------PPGYQGEGATVY--PGYYLT 377 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 11/121 (9%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P L +G + V+ ++ +L I + + F +V+ FQ L Sbjct: 180 PGVALRVGMAGNDVKTIQTQLNRIANNYPSIPKIPSTDGIFGESTARSVREFQRIFNLTQ 239 Query: 154 SGMVDSSTL-------EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 G+V ST A+ +L L+V + + + G+ V V L Sbjct: 240 DGIVGKSTWYKIKYIFTAVKQLGELASEGLRVEEVTVPYPPTLQEGMSGVEVRTIQYYLS 299 Query: 207 A 207 Sbjct: 300 V 300 >gi|313900439|ref|ZP_07833932.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] gi|312954501|gb|EFR36176.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] Length = 356 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQM 147 G W + L G+ + VQ+L+ L IIS PS + F ++ AV+ +Q Sbjct: 273 TGLW---TGKVLRQGDVGIEVQQLQYFLSIISESYPSIPSVTVDSRFGPGLDRAVRAYQR 329 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRI 173 GL G+V T ++ + Sbjct: 330 EFGLAVDGLVGRYTWNSIYETYAAIV 355 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL--IISGD--LDPSKGLSVAFDAYVESAVKLFQMRHG 150 P P L L +S V ++E L I + F ESAV+ FQ + Sbjct: 175 PSYPGYALRLESSGQPVFIIQELLNGIAVNYPNIPLIYPPDAVFGPQTESAVRAFQRQFD 234 Query: 151 LDPSGMVDSSTLEAMNV 167 L G+V ST ++ Sbjct: 235 LTVDGIVGQSTWYQISR 251 >gi|269792192|ref|YP_003317096.1| ErfK/YbiS/YcfS/YnhG family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099827|gb|ACZ18814.1| ErfK/YbiS/YcfS/YnhG family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 228 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 S I FY+ +H T P T GC+R+RN I L ++ K T W Sbjct: 113 GSKLISFYNPWQIAIHGTNSPSSIGKR---VTHGCIRMRNRDIETLVTYIGKGTRIW 166 >gi|209886032|ref|YP_002289889.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] gi|209874228|gb|ACI94024.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] Length = 240 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 20/110 (18%) Query: 287 DWNSPEPP----NFIFRQDPGKINAMASTKIEFYS--RNNTY-MHDTPEPILFNNVVRFE 339 DW+ + G N M S I YS ++ + +H T +P Sbjct: 133 DWHPTKSEIERLGVPTFVKGGPDNPMGSRAIYLYSGGKDTLFRIHGTNQPEYIGAS---I 189 Query: 340 TSGCVRVRN--IIDLDV--------WLLKDTPTWSRYHIEEVVKTRKTTP 379 +SGC+R+ N +IDL +L+ S ++ + ++ T Sbjct: 190 SSGCIRMTNEDVIDLYSRVKMGAIVVVLEPKQGDSPFNSKMALQGGNTLY 239 >gi|148242241|ref|YP_001227398.1| hypothetical protein SynRCC307_1142 [Synechococcus sp. RCC307] gi|147850551|emb|CAK28045.1| Uncharacterized conserved secreted protein [Synechococcus sp. RCC307] Length = 181 Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 50/159 (31%), Gaps = 33/159 (20%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++ +G+V V VGR D TP+ ++R+M NP W P + + P Sbjct: 48 KVKVFHDGQVVATFPVAVGRSDAPTPLGEHTVHRMMKNPVWSSPWTGR--------QVKP 99 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 L I +D N PG N Sbjct: 100 HALGPIGTRWIGFWYTCGNRSSLDAN-------PPVFRPGACN-------------EIGF 139 Query: 324 HDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 H T ++GCVR+ R+ + L + + T Sbjct: 140 HGTGSVKSIGT---AASNGCVRMFDRDAVALYDLVKEGT 175 >gi|298244048|ref|ZP_06967855.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297557102|gb|EFH90966.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 368 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 10/111 (9%) Query: 70 ISKETIAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S+ET + + + G WP+L G+ +V L+ +L +G Sbjct: 72 YSQETSDAVKS-LQHKDTLSENGLVGALTWPKLIKAT-SSGSQGYTVMALQHQLNQAGF- 128 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + F + E AV+ +Q + L G+ T + + R ++ Sbjct: 129 --HLNVDGVFGSDTEKAVRAYQQQVSLSVDGVAGVRTWQYLLAATAAREKK 177 >gi|298292514|ref|YP_003694453.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296929025|gb|ADH89834.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 210 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 56/212 (26%), Gaps = 51/212 (24%) Query: 156 MVDSSTLEAMNVP---VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 + + ++ P QL R ++++ L V+ Sbjct: 35 TLGNKIVDVPEKPGYVPSAEEEQLDPAFRRQPVYFRTNEAPGTIIIHTNERFLYFVQGDN 94 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 LR + VGR Q +++R P W P +IQ+ Sbjct: 95 RALRYGIGVGRDGFQ-WSGLQKVSRKAEWPDWTPPPEMIQRQ------------------ 135 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPIL 331 P G N M + + S Y +H T P Sbjct: 136 ---------------------PYLPRWMAGGPGNPMGAAALYLGS--TVYRIHGTNMPDT 172 Query: 332 FNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 +SGC R+ N DL + T Sbjct: 173 IGM---AVSSGCFRLINPDVQDLFNRVPVGTK 201 >gi|291563072|emb|CBL41888.1| Putative peptidoglycan-binding domain-containing protein [butyrate-producing bacterium SS3/4] Length = 412 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG---DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G + V++L+E+L + P + AV+ FQ GL + Sbjct: 328 PGYDLKIGATGDKVRQLQEQLDAISSVYNAIPDISPDGIYGPATAEAVRKFQSIFGLPQT 387 Query: 155 GMVDSSTL 162 G+VD +T Sbjct: 388 GVVDFATW 395 >gi|153010573|ref|YP_001371787.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151562461|gb|ABS15958.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 256 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 46/200 (23%) Query: 172 RIRQLQVNLMRIKKL-----LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 I ++ V+ + K V+V+ P L V+ R V VGR Sbjct: 78 PIPEVDVSKVDPKWWRTEVDYPTDERAGIVIVDTPNRYLYHVQPHGRATRYGVGVGRDGF 137 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 I P W P ++ + L P + + + Sbjct: 138 SWAGRGRHIAYKREWPRWTPPDEMVARQ--PELE--PYSIANGGM--------------- 178 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGC 343 DPG N + + + + +R+ Y +H PE +SGC Sbjct: 179 --------------DPGLKNPLGARALYIHEGNRDTIYRIHGNPEFWTIGQ---AVSSGC 221 Query: 344 VRV--RNIIDLDVWLLKDTP 361 +R+ +++I L + +P Sbjct: 222 IRMINQDVIHLADNVRDGSP 241 >gi|296333268|ref|ZP_06875721.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675228|ref|YP_003866900.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149466|gb|EFG90362.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413472|gb|ADM38591.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 250 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + +V +L++ L + G+ + +AVK FQ+ Sbjct: 169 PLPSGVIKLTSPYRKGTNVLQLQKALAALHFYPDKGAKNNGIDGVYGPKTANAVKRFQLL 228 Query: 149 HGLDPSGMVDSSTLEAMN 166 +GL G+ T + Sbjct: 229 NGLAADGIYGPKTKAKLK 246 >gi|294500739|ref|YP_003564439.1| Endopeptidase [Bacillus megaterium QM B1551] gi|294350676|gb|ADE71005.1| Endopeptidase [Bacillus megaterium QM B1551] Length = 225 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V++L++ L G + SAVK FQ ++GL G Sbjct: 25 ALGDQTLRQGMNHQDVKQLQQTLKNKGYFKGNTTTYFG--TVTTSAVKSFQRKNGLAADG 82 Query: 156 MVDSSTLEAMNV 167 +V T + V Sbjct: 83 IVGKGTYAKLGV 94 >gi|254478173|ref|ZP_05091555.1| C-terminal processing peptidase subfamily, putative [Carboxydibrachium pacificum DSM 12653] gi|214035902|gb|EEB76594.1| C-terminal processing peptidase subfamily, putative [Carboxydibrachium pacificum DSM 12653] Length = 470 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 25/144 (17%) Query: 63 IDSDIPIISKETIAQTEKAIAFY-----QDILSRGGWPEL------------PIRPLHLG 105 + S +P+ T IA Y + I G P++ L +G Sbjct: 332 VQSVVPLQDGSGFKLT---IARYKLPSGRYIGKEGLTPDVYVKNVQYTADIKFAGELKIG 388 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V+ L++ L + + F +AVK Q + GL P+G+ D +T A+ Sbjct: 389 SRGNEVKILQKYLNLLKF--NAGPEDGIFGPKTANAVKELQKKAGLSPTGVFDKNTYNAL 446 Query: 166 NV---PVDLRIRQLQVNLMRIKKL 186 ++ + L+ L ++ + Sbjct: 447 LKMIDSLNNKDAVLEKALELLRNM 470 >gi|188582248|ref|YP_001925693.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179345746|gb|ACB81158.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 241 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 54/199 (27%), Gaps = 50/199 (25%) Query: 162 LEAMNVPVDLRIRQLQVN----LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 A+ + R + ++++ A L ++ G +R Sbjct: 76 FAALPTGPAPEEATVARAVDPRYARQVVAYDGPGRAGQIVIDTNAKYLYLIQPGGQAIRY 135 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + VGR I+ P W P ++++ Sbjct: 136 GIGVGRPGFV-WTGAKTISAKREWPDWTPPAEMLRRR----------------------- 171 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 P+ G N + + + + +H T EP Sbjct: 172 ----------------PDLPRHMAGGPENPLGARAMYLGTS-LYRIHGTNEPHTIGQN-- 212 Query: 338 FETSGCVRV--RNIIDLDV 354 +SGC+R+ ++IDL Sbjct: 213 -VSSGCIRMMNEDVIDLYE 230 >gi|148242142|ref|YP_001227299.1| hypothetical protein SynRCC307_1043 [Synechococcus sp. RCC307] gi|147850452|emb|CAK27946.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 165 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 51/160 (31%), Gaps = 33/160 (20%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L ++NG+ V VGR TP+ R++R+ +P W P +K +A Sbjct: 31 RQLRVIQNGRQIASYPVAVGRATNPTPLGTHRVHRLEKDPIWSSP---WRKRQVAASATG 87 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 P + W + R+ P + E + Sbjct: 88 PLGTRWIGF----------------WYRCGKRSSTDRRPP---------RFEADNCREIG 122 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 H T + T GCVR+RN I L + + Sbjct: 123 FHGTGKLSSIGQ---AATFGCVRLRNQDAISLFDLVKEGD 159 >gi|114567574|ref|YP_754728.1| hypothetical protein Swol_2063 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338509|gb|ABI69357.1| hypothetical protein Swol_2063 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 434 Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V ++++LI G + + +D V FQ H L+ +G+ + T Sbjct: 358 LKEGFTGDDVLEMQQQLIALGY---NCQANKVYDGQTRDMVAEFQSDHRLEVTGIATAET 414 Query: 162 LEAMN 166 + Sbjct: 415 RALLQ 419 >gi|149189054|ref|ZP_01867342.1| putative general secretion pathway protein A [Vibrio shilonii AK1] gi|148837017|gb|EDL53966.1| putative general secretion pathway protein A [Vibrio shilonii AK1] Length = 554 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 2/96 (2%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 ++ I+ + + W L L V+ L E+L L + Sbjct: 441 GQQRISLPKSWLEQLWTGEYYSIWQRELQTTLRLNQQGAQVRLLDEKLSKV--LGGTPSG 498 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S FD ++ V++FQ +D G+ +TL + Sbjct: 499 SDIFDEALKRKVEIFQRWQNIDVDGIAGRNTLRKLE 534 >gi|170751777|ref|YP_001758037.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170658299|gb|ACB27354.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 269 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 54/183 (29%), Gaps = 46/183 (25%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + + ++++ L V+ G+ LR + VGR ++R Sbjct: 126 YQRQEVAFAGRQKPGTIVIDTAGKHLYLVQAGQRALRYGIGVGRPGFA-WSGLKTVSRKA 184 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P ++ + P+ Sbjct: 185 EWPDWTPPAEMLARR---------------------------------------PDLPRH 205 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLL 357 G N + + + S +H T EP +SGC+R+ N +IDL + Sbjct: 206 MAGGPENPLGARALYLGSS-LYRIHGTNEPNTIGQS---VSSGCIRMMNDDVIDLYDRVP 261 Query: 358 KDT 360 T Sbjct: 262 VGT 264 >gi|220925047|ref|YP_002500349.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219949654|gb|ACL60046.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 215 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 49/167 (29%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R K G ++V+ L V + +R V VGR T R+ Sbjct: 73 RELVPFGNKYGPGTIVVSTSERRLYYVLGDGMAIRYGVGVGRPG-FTWSGTKRVVAKREW 131 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P K+M+A P+Y+ Sbjct: 132 PSWTPP-----KEMLARRPDLPRYMA---------------------------------- 152 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP +SGC+R+ N Sbjct: 153 GGIDNPLGARAMYIG-GTLYRIHGSNEPDTIGQ---AVSSGCIRMTN 195 >gi|159898672|ref|YP_001544919.1| peptidoglycan binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891711|gb|ABX04791.1| Peptidoglycan-binding domain 1 protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I+ W L + + G++ +V+ ++ L + + AF A ESAVK FQ Sbjct: 81 GIVGPNTWNALIV-TVRRGDNGNAVKAVQTLLNAK--RNAGLTVDGAFGAGTESAVKSFQ 137 Query: 147 MRHGLDPSGMVDSSTLE 163 GL G+V +T + Sbjct: 138 SHAGLSADGVVGPTTWK 154 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + GN V+ ++ L I F + ES+VK FQ GL G+V + Sbjct: 35 TISKGNRGTDVKAMQYLLNI--------SADGVFGSGTESSVKSFQSSRGLGADGIVGPN 86 Query: 161 TLEAMNVPV-------DLRIRQLQVNLMRIKKLLEQ 189 T A+ V V ++ Q +N R L Sbjct: 87 TWNALIVTVRRGDNGNAVKAVQTLLNAKRNAGLTVD 122 >gi|256785704|ref|ZP_05524135.1| serine/threonine protein kinase [Streptomyces lividans TK24] gi|289769597|ref|ZP_06528975.1| serine/threonine protein kinase [Streptomyces lividans TK24] gi|289699796|gb|EFD67225.1| serine/threonine protein kinase [Streptomyces lividans TK24] Length = 452 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G W + G+ V+ L+ L + + F + AV FQ R G Sbjct: 376 SGTWDF----TIARGDGGSQVRELQCLLRYLHGITAVGEVDGDFGPMTQGAVLTFQERAG 431 Query: 151 LDPSGMVDSSTLEAMN 166 LD G+V +T A+ Sbjct: 432 LDADGIVGPATWRALR 447 >gi|159043497|ref|YP_001532291.1| peptidoglycan-binding domain 1 protein [Dinoroseobacter shibae DFL 12] gi|157911257|gb|ABV92690.1| peptidoglycan-binding domain 1 protein [Dinoroseobacter shibae DFL 12] Length = 260 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V+ L++ L ++ L + AF +AV FQ +GL G+V +T A Sbjct: 200 GDRGRIVEDLQQALNLA--LGLDLDVDGAFGPATRAAVMEFQRVNGLTVDGIVGPNTQAA 257 Query: 165 MNV 167 + + Sbjct: 258 LGM 260 >gi|295314768|gb|ADF97534.1| PlyM9 [uncultured phage] Length = 343 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 11/87 (12%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L + F E+AVK FQ +GL G+ + + Sbjct: 221 GDTGAAVKTLQSELKQAGFL---LSVDGIFGKGTETAVKAFQRANGLAVDGVFGTGS--- 274 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKM 191 ++ + NL + + Sbjct: 275 -----QAKLNAILANLNKKPVVNPAAP 296 >gi|317128557|ref|YP_004094839.1| spore cortex-lytic enzyme [Bacillus cellulosilyticus DSM 2522] gi|315473505|gb|ADU30108.1| spore cortex-lytic enzyme [Bacillus cellulosilyticus DSM 2522] Length = 372 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G + V L+ RL G + F AV+ +Q G++ +G+V +T Sbjct: 39 IQRGATGDDVVELQARLQYIGFY--EGDIDGVFGWGTYWAVRNYQQEFGMEVTGLVGENT 96 Query: 162 LEAMNVPVD 170 + D Sbjct: 97 KAMLERSTD 105 >gi|290960881|ref|YP_003492063.1| peptidodoglycan-binding membrane protein [Streptomyces scabiei 87.22] gi|260650407|emb|CBG73523.1| putative peptidodoglycan-binding membrane protein [Streptomyces scabiei 87.22] Length = 379 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 6/79 (7%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--- 154 + L G+ V L+ RL G + + +D+ VE AV ++Q G+ Sbjct: 303 APKTLRPGDDDPEVTELQLRLSQLGIY--TGDIDDNYDSQVEQAVLVYQSSRGITKDQDE 360 Query: 155 -GMVDSSTLEAMNVPVDLR 172 G+ T E + Sbjct: 361 PGVYGLVTRERLESETKEP 379 >gi|52080803|ref|YP_079594.1| spore cortex-lytic enzyme [Bacillus licheniformis ATCC 14580] gi|52786173|ref|YP_092002.1| hypothetical protein BLi02431 [Bacillus licheniformis ATCC 14580] gi|52004014|gb|AAU23956.1| spore cortex-lytic enzyme [Bacillus licheniformis ATCC 14580] gi|52348675|gb|AAU41309.1| SleB [Bacillus licheniformis ATCC 14580] Length = 321 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 31 AFSEQVIQRGATGDDVIELQARLQYNGYY--NGRIDGVYGWATYWAVRNFQNQFGLRDTD 88 Query: 155 GMVDSSTLE 163 G+V T Sbjct: 89 GLVGPKTKR 97 >gi|312792945|ref|YP_004025868.1| erfk/ybis/ycfs/ynhg family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180085|gb|ADQ40255.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 223 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V ++ RL G S + + A +E A+ LFQ ++ L + + Sbjct: 154 RTIYPGDTGEDVMAVQRRLKELGFYSGS--IDGKYGAALEYAINLFQKKNKLSVTNKITP 211 Query: 160 STLEAMN 166 L M Sbjct: 212 YLLRKMG 218 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 16/124 (12%) Query: 258 LLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + Y+ I GK V ++ G+ + Sbjct: 39 SIDDSRLYVFKEGILYKSYPISPGKPSTPTPVGTFKIISKDYW-----GEG--FGGRWMG 91 Query: 315 FYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEV 371 R +H T + GCVR+ +++ +L ++ T I Sbjct: 92 LNVRYGKYGIHGTIYESYIGA---HVSKGCVRMLNKDVKELFSYIPIGTTVIVSEGIYGE 148 Query: 372 VKTR 375 + Sbjct: 149 FRNG 152 >gi|285808600|gb|ADC36119.1| putative lipoprotein [uncultured bacterium 253] Length = 273 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 62/238 (26%), Gaps = 73/238 (30%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ RL G + + FD +SA+ FQ G +G + + L+A+ Sbjct: 31 SEVREAERRLSDLGYW--TGTIDGVFDPGTKSALIAFQKWEGRPITGELTPNELQAIRTS 88 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + R G ++ V++ L V + V G Sbjct: 89 APPKAR---------------DFGYAHIEVDLDRQVLMVVNDAGGVRVLPVATGNE---- 129 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 K + ++ + + D+ E W Sbjct: 130 ------------------------KQFIDEGQESVAHTPRGRFVVYDK--------EFGW 157 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 ++ ++ + + +H N + GC+RV Sbjct: 158 HT---------------GSLGAVYYANFISGGVAIHG-----SRNVPNAPASHGCIRV 195 >gi|326803551|ref|YP_004321369.1| peptidase, S41 family [Aerococcus urinae ACS-120-V-Col10a] gi|326650259|gb|AEA00442.1| peptidase, S41 family [Aerococcus urinae ACS-120-V-Col10a] Length = 497 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 8/108 (7%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 E + Y ++ G + LG S ++ ++ +L + G L+ + FD Sbjct: 388 DIEAKLPDYSELSLVDG-----SQNYQLGEESDKIKNIQAQLALLGYLESDQVQ-GKFDE 441 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 ++A+ FQ H L+ +G V+ T +A+ LR L + + K Sbjct: 442 QTQTALGAFQADHELEKTGQVNDETAQALTR--ALRDYILAHDTQKDK 487 >gi|311032644|ref|ZP_07710734.1| putative cell wall endopeptidase [Bacillus sp. m3-13] Length = 215 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 EL + L G V+ L++ L G S+ + Y AVK FQ +G+ +G Sbjct: 24 ELGDQTLKPGMYHEDVKELQKVLDDKGYFGYSETTTYY-GEYTTDAVKKFQADNGITVNG 82 Query: 156 MVDSSTLEAMNV 167 + T EA+ + Sbjct: 83 IAGEETFEALGI 94 >gi|254424824|ref|ZP_05038542.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196192313|gb|EDX87277.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 339 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + L G++ SV L+ERL G + + + V+ +Q L + Sbjct: 192 GSMTSDTLAPGSTGSSVIALQERLNNFG---IPVFVDGTYGFETQQGVRTYQRLQRLPVT 248 Query: 155 GMVDSSTLEAMNVPVDLR 172 G D TL +M V + Sbjct: 249 GTADRRTLSSMGFSVSSK 266 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L R L G+ V+ L+ L +G + V +Q L +G+ Sbjct: 55 LTRRALRRGDIGEDVRALQLYLSQNGLFPYQA--DGIYGQETVDGVVTYQRIRDLPATGI 112 Query: 157 VDSSTLEAMN 166 D TL M+ Sbjct: 113 ADEETLRDMD 122 >gi|237654227|ref|YP_002890541.1| peptidoglycan-binding protein [Thauera sp. MZ1T] gi|237625474|gb|ACR02164.1| Peptidoglycan-binding domain 1 protein [Thauera sp. MZ1T] Length = 274 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 8/79 (10%) Query: 95 PELPIR------PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 P +P + + G + + ++E G ++ + AF E+A++ FQ Sbjct: 193 PSIPRKDAEDRPTIRRGATGNPIFLVKEVQRKLGF--GAQQVDGAFGPLTEAAMRRFQRA 250 Query: 149 HGLDPSGMVDSSTLEAMNV 167 HGL P G+V T +A++ Sbjct: 251 HGLVPDGIVGPRTWKALDT 269 >gi|145297086|ref|YP_001139907.1| hypothetical protein cgR_2982 [Corynebacterium glutamicum R] gi|140847006|dbj|BAF56005.1| hypothetical protein [Corynebacterium glutamicum R] Length = 396 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 13/81 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK-------------GLSVAFDAYVESAVKLF 145 + L +G+ S V +R L G ++ FD + ++K F Sbjct: 2 SKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSF 61 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q G+ PSG++D TL A+ Sbjct: 62 QQARGVVPSGLIDDLTLRAIR 82 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 101 PLHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 GN V ++ L G + F AV +Q+ +G+ G+ Sbjct: 94 AYQPGNQLVGDDVVEIQSHLQELGFYA--DRVDGHFGELTHKAVMNYQLNYGMQVDGICG 151 Query: 159 SSTLEAMNV 167 T+ A++ Sbjct: 152 PDTIRALSR 160 >gi|228953081|ref|ZP_04115141.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|112380305|gb|ABI16957.1| SleB [Bacillus thuringiensis serovar kurstaki] gi|228806587|gb|EEM53146.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 259 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST----LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T ++A + N ++ L+ N+P Sbjct: 90 LAGAKTKQMLVKATKYDKSTANKGTTTNKGNSGGTAQENKPLQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|91201948|emb|CAJ75008.1| hypothetical protein kuste4246 [Candidatus Kuenenia stuttgartiensis] Length = 314 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 64/206 (31%) Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + +N D R+ ++K L G +L++ +L + N + + + Sbjct: 162 ELIMRINKKPDSRLNI----GEKLKIL----KGKTKILISKSEFTLTVLLNDRYVKQYRI 213 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 G+ D+ TP + M NP Sbjct: 214 GTGKNDK-TPEGTFEVKNKMKNPT------------------------------------ 236 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVV 336 W SP + + + N + + I F + +H T P Sbjct: 237 --------WYSPYGGVYSY---GDEKNILGTRWIGFKEKENLAGFGIHGTTMPETIGT-- 283 Query: 337 RFETSGCVRVRN--IIDLDVWLLKDT 360 + GC+R++N + ++ ++ DT Sbjct: 284 -ASSDGCIRMKNSDVEEVFDFVTTDT 308 >gi|261417931|ref|YP_003251613.1| spore cortex-lytic enzyme [Geobacillus sp. Y412MC61] gi|297529599|ref|YP_003670874.1| spore cortex-lytic enzyme [Geobacillus sp. C56-T3] gi|319767257|ref|YP_004132758.1| spore cortex-lytic enzyme [Geobacillus sp. Y412MC52] gi|261374388|gb|ACX77131.1| spore cortex-lytic enzyme [Geobacillus sp. Y412MC61] gi|297252851|gb|ADI26297.1| spore cortex-lytic enzyme [Geobacillus sp. C56-T3] gi|317112123|gb|ADU94615.1| spore cortex-lytic enzyme [Geobacillus sp. Y412MC52] Length = 267 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + + F A++ FQ +GL G Sbjct: 25 AFSPQVIQRGAVGDDVIELQARLQYLGFY--NGKIDGVFGWRTYWALRNFQYEYGLPVDG 82 Query: 156 MVDSSTLEAM 165 + S T + Sbjct: 83 LAGSETKRKL 92 >gi|295314810|gb|ADF97555.1| PlyM30 [uncultured phage] Length = 338 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L + F E+AVK FQ +GL G+ + + Sbjct: 202 GDTGAAVKTLQSELKQAGFL---LSVDGIFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 258 Query: 165 MNV 167 +N Sbjct: 259 LNA 261 >gi|295314772|gb|ADF97536.1| PlyM11 [uncultured phage] Length = 356 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L + F E+AVK FQ +GL G+ + + Sbjct: 220 GDTGAAVKTLQSELKQAGFL---LSVDGIFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 276 Query: 165 MNV 167 +N Sbjct: 277 LNA 279 >gi|295314756|gb|ADF97528.1| PlyM3 [uncultured phage] Length = 307 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L + F E+AVK FQ +GL G+ + + Sbjct: 185 GDTGAAVKTLQSELKQAGFL---LSVDGIFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 241 Query: 165 MNV 167 +N Sbjct: 242 LNA 244 >gi|78045053|ref|YP_360576.1| putative spore cortex-lytic enzyme [Carboxydothermus hydrogenoformans Z-2901] gi|77997168|gb|ABB16067.1| putative spore cortex-lytic enzyme [Carboxydothermus hydrogenoformans Z-2901] Length = 226 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G+ V + +L+ G + FD + AV FQ + GL G+V T+ Sbjct: 33 KVGSYGSKVLEIERKLVSLGYKVY--KVDKYFDVSTKKAVMAFQKKEGLKVDGIVGPVTM 90 Query: 163 EAMNV 167 + + Sbjct: 91 KRLIA 95 >gi|239831945|ref|ZP_04680274.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] gi|239824212|gb|EEQ95780.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] Length = 208 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFE 339 + V N + D G N M + + + ++ Y +H T +P Sbjct: 123 PDMVKRNPEHYGPYKDGVDGGPRNPMGARALYMHKDGKDTYYRVHGTNDPSSIGK---AV 179 Query: 340 TSGCVRV--RNIIDLDV 354 ++GC+R+ ++IIDL Sbjct: 180 SAGCIRLLNQDIIDLYD 196 >gi|163736602|ref|ZP_02144021.1| ErfK/YbiS/YcfS/YnhG [Phaeobacter gallaeciensis BS107] gi|161390472|gb|EDQ14822.1| ErfK/YbiS/YcfS/YnhG [Phaeobacter gallaeciensis BS107] Length = 199 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 47/182 (25%) Query: 179 NLMRIKKLLEQK-MGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRIN 236 + + +G+ +L +I + +L +G V + T ++++ Sbjct: 52 SFQQQAWQDHFDELGVGCMLADISSRALHYWGGDGVTYRLFPSSVPMTEELTKRGYTKVV 111 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 R NP W S+ ++D P+ Sbjct: 112 RKAKNPSWTPTASMRERD---------------------------------------PSL 132 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 R D G N + + + +H T + R +SGC+ + N + L Sbjct: 133 PLRMDGGPGNPLGTRAMYLSWP-AYLVHGTHDTRKIG---RQSSSGCIGLYNQHVEALYE 188 Query: 355 WL 356 + Sbjct: 189 MV 190 >gi|153839922|ref|ZP_01992589.1| general secretion pathway protein A [Vibrio parahaemolyticus AQ3810] gi|149746554|gb|EDM57542.1| general secretion pathway protein A [Vibrio parahaemolyticus AQ3810] Length = 539 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L + L + + S + FD ++ V+LFQ G+ Sbjct: 451 WQAPLKETLRLDMEGPAIEVLDQLLAKA--VSESPLETSIFDGALKERVELFQRWQGIGV 508 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TLE + V L Sbjct: 509 DGIAGHRTLERLQQSVQPNAPTLA 532 >gi|295314758|gb|ADF97529.1| PlyM4 [uncultured phage] Length = 329 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L + F E+AVK FQ +GL G+ + + Sbjct: 183 GDTGDNVRALQTGLKQAGFL---LSVDGIFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 239 Query: 165 MNV 167 +N Sbjct: 240 LNA 242 >gi|28897189|ref|NP_796794.1| putative general secretion pathway protein A [Vibrio parahaemolyticus RIMD 2210633] gi|260361614|ref|ZP_05774641.1| general secretion pathway protein A [Vibrio parahaemolyticus K5030] gi|260878094|ref|ZP_05890449.1| general secretion pathway protein A [Vibrio parahaemolyticus AN-5034] gi|260895977|ref|ZP_05904473.1| general secretion pathway protein A [Vibrio parahaemolyticus Peru-466] gi|28805398|dbj|BAC58678.1| putative general secretion pathway protein A [Vibrio parahaemolyticus RIMD 2210633] gi|308086710|gb|EFO36405.1| general secretion pathway protein A [Vibrio parahaemolyticus Peru-466] gi|308089713|gb|EFO39408.1| general secretion pathway protein A [Vibrio parahaemolyticus AN-5034] gi|308111838|gb|EFO49378.1| general secretion pathway protein A [Vibrio parahaemolyticus K5030] Length = 539 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L + L + + S + FD ++ V+LFQ G+ Sbjct: 451 WQAPLKETLRLDMEGPAIEVLDQLLAKA--VSESPLETSIFDGALKERVELFQRWQGIGV 508 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TLE + V L Sbjct: 509 DGIAGHRTLERLQQSVQPNAPTLA 532 >gi|295314764|gb|ADF97532.1| PlyM7 [uncultured phage] Length = 356 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L + F E+AVK FQ +GL G+ + + Sbjct: 220 GDTGAAVKTLQSELKQAGFL---LSVDGIFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 276 Query: 165 MNV 167 ++ Sbjct: 277 LDA 279 >gi|295094743|emb|CBK83834.1| Putative peptidoglycan binding domain./Stage II sporulation protein. [Coprococcus sp. ART55/1] Length = 410 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V +L+ +L I + + + AV+ FQ L + Sbjct: 326 PGYELTIGSSGDKVSQLQRQLARIALNYPAIGTVTVDGVYGQNTADAVRKFQQIFNLPVT 385 Query: 155 GMVDSSTLEAMNV 167 G+ D T ++ Sbjct: 386 GVTDYKTWYKISQ 398 >gi|255527303|ref|ZP_05394182.1| spore cortex-lytic enzyme [Clostridium carboxidivorans P7] gi|296185714|ref|ZP_06854123.1| spore cortex-lytic enzyme [Clostridium carboxidivorans P7] gi|255508993|gb|EET85354.1| spore cortex-lytic enzyme [Clostridium carboxidivorans P7] gi|296049842|gb|EFG89267.1| spore cortex-lytic enzyme [Clostridium carboxidivorans P7] Length = 235 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V +++ +L S + + +AVK FQ ++GL G+V STL+A Sbjct: 44 GSKGGVVSQIQSKLKAWYYYSGS--VDGVYGYGTFTAVKKFQAKNGLKVDGVVGDSTLQA 101 Query: 165 MNVPVDL 171 + + Sbjct: 102 LGIYSAK 108 >gi|126730040|ref|ZP_01745852.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sagittula stellata E-37] gi|126709420|gb|EBA08474.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sagittula stellata E-37] Length = 182 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 41/183 (22%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 QL L + + + + +L+ A L ++ +R V G+ + Sbjct: 23 QLDPTLRPQRVGIRKDLAPGQILILPAAHFLYYIDQPGAAMRYGVGFGKAGQAI-SGEFY 81 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + P W ++I++D + + Sbjct: 82 VGSKKEWPTWRPTDAMIERD------------------------------PGSYGKFKGN 111 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNT---YMHDTPEPILFNNVVRFETSGCVRV--RNI 349 ++ Q G N + + + Y +H T P R ++GCVR+ ++ Sbjct: 112 DY--VQPGGPGNPLGARALYLYRDGRYTYNAIHGTTSPESIG---RSVSNGCVRMINEHV 166 Query: 350 IDL 352 +DL Sbjct: 167 MDL 169 >gi|328471958|gb|EGF42835.1| general secretion pathway protein A [Vibrio parahaemolyticus 10329] Length = 539 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L + L + + S + FD ++ V+LFQ G+ Sbjct: 451 WQAPLKETLRLDMEGPAIEVLDQLLAKA--VSESPLETSIFDGALKERVELFQRWQGIGV 508 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TLE + V L Sbjct: 509 DGIAGHRTLERLQQSVQPNAPTLA 532 >gi|323703741|ref|ZP_08115381.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum nigrificans DSM 574] gi|323531329|gb|EGB21228.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum nigrificans DSM 574] Length = 292 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 56/175 (32%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + +++N L +NG + V GR TP ++ N Sbjct: 22 NSKMIIINKKTNQLGFYQNGVLTNVFPVATGRRRSFTPEGTFKVINKQVN---------- 71 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 P Y K + N + Sbjct: 72 -----------PPYYKKH-----------------------------IPGGSPYNPLGPR 91 Query: 312 KIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 + + +H P + ++GC+R+ N L WL P + Sbjct: 92 WLGLSAPGGPYGIHGNNNPASIGT---YASNGCIRLHNKDIL--WLYDQVPIGTP 141 >gi|322805741|emb|CBZ03306.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum H04402 065] Length = 281 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 3/99 (3%) Query: 68 PIISKETIAQTEKAI-AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 P SK + + +SR G+ P G + +++ LI G Sbjct: 180 PSTSKPVQTNKKHTLINQLYAEMSRQGFNTFPAC--RQGARGNITKIIQQMLINIGYTVG 237 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S G F AVK FQ L +V T +A+ Sbjct: 238 SFGADGVFGNSTVMAVKSFQRDCNLSADVLVGKETWKAL 276 >gi|302553257|ref|ZP_07305599.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302470875|gb|EFL33968.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 259 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 91 RGGWPELPIRPLHL----GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 G W R L GN+ V + L +G + F + E AV+ Q Sbjct: 181 DGRWYAGNSRTLKAVLATGNAGPEVAEAQCLLREAGL--SPGAVDGIFGPHTEQAVRELQ 238 Query: 147 MRHGLDPSGMVDSSTLEAMN 166 R GL G++ T +A+ Sbjct: 239 KRSGLVVDGIIGPHTWKALR 258 >gi|326804586|ref|YP_004327457.1| phage-encoded peptidoglycan binding protein [Salmonella phage Vi01] gi|301795236|emb|CBW37954.1| phage-encoded peptidoglycan binding protein [Salmonella phage Vi01] Length = 264 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LGN V+ L++ L G S F E+AVK Q GL G+ T Sbjct: 4 LKLGNRGSEVKSLQQSLNKIGF---SLVADGIFGKATENAVKSVQAGAGLVIDGIAGPKT 60 Query: 162 LEAMN 166 A+ Sbjct: 61 FYAIR 65 >gi|323137227|ref|ZP_08072306.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322397585|gb|EFY00108.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 259 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 56/187 (29%), Gaps = 44/187 (23%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + A R++ + +R + + ++V+ P L V+ +R + V Sbjct: 98 VAAYAPQPMDMQREMDPDYLRAEVDYQGPESPGTIVVDTPRKHLYLVQGRGRAIRYGIGV 157 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 GR + I+R P W P ++ + Sbjct: 158 GRPGFE-WSGVKTISRKAEWPDWTPPAEMLARR--------------------------- 189 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 P+ D G N + + + S +H T EP +S Sbjct: 190 ------------PDLPRHMDGGPANPLGARALYLGSS-LYRIHGTNEPHTIGQN---VSS 233 Query: 342 GCVRVRN 348 GC+R+ N Sbjct: 234 GCIRMMN 240 >gi|260429377|ref|ZP_05783354.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Citreicella sp. SE45] gi|260420000|gb|EEX13253.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Citreicella sp. SE45] Length = 188 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPI 330 + + + + ++ Q G N + + + F + +T+ +H T EP Sbjct: 97 WRPTQEMIERDPSSYGRFRNNDY--VQPGGPTNPLGARALYLFQNGRDTFYRIHGTTEPQ 154 Query: 331 LFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 R ++GC+R+ ++IDL + TP Sbjct: 155 SIG---RSVSNGCIRMLNEHVIDLYNRVPVGTP 184 >gi|320011044|gb|ADW05894.1| Peptidoglycan-binding domain 1 protein [Streptomyces flavogriseus ATCC 33331] Length = 329 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 4/79 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS- 154 E+ L G+S V L+ RL + + A VE AV +Q + Sbjct: 249 EVSGATLRRGDSGAEVAELQRRLQEI--WVYRGPDNGDYSAQVEQAVAEYQRWVSVRNDP 306 Query: 155 -GMVDSSTLEAMNVPVDLR 172 G+ T A+ R Sbjct: 307 PGVYGPETRSALESQTSGR 325 >gi|134297972|ref|YP_001111468.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] gi|134050672|gb|ABO48643.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] Length = 192 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 6/63 (9%) Query: 304 KINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 + + + +H T P ++GC+R+ N+ +L + T Sbjct: 59 PGGILGTRWLGLNIPGGNYGIHGTSNPSSIGK---LVSAGCIRMYNENVEELFPMIPVGT 115 Query: 361 PTW 363 P Sbjct: 116 PVE 118 >gi|21223194|ref|NP_628973.1| serine/threonine protein kinase [Streptomyces coelicolor A3(2)] gi|9367447|emb|CAB97420.1| putative serine/threonine protein kinase [Streptomyces coelicolor A3(2)] Length = 452 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G W + G+ V+ L+ L + + F + AV FQ R G Sbjct: 376 SGTWDF----TIARGDGGSQVRELQCLLRYLHGITAVGEVDGDFGPMTQGAVVTFQERAG 431 Query: 151 LDPSGMVDSSTLEAMN 166 LD G+V +T A+ Sbjct: 432 LDADGIVGPATWRALR 447 >gi|16265094|ref|NP_437886.1| hypothetical protein SM_b21516 [Sinorhizobium meliloti 1021] gi|15141233|emb|CAC49746.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 243 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + R++ R + V+V+ P L +E G +R V +GR Sbjct: 69 PAVPYREMDPKYFRQRVPDPTGEPAGTVVVDTPGRFLYLIEPGGTAMRYGVGIGREGFA- 127 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I+ P W P +I + L + + + Sbjct: 128 WQGEGIIHWRQPWPRWKPPADMIARR--PELEK---------YSVANGG----------- 165 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVR 345 PG N + + + F + + +H TPE +SGCVR Sbjct: 166 -----------MAPGIDNPLGARALYIFQNGQDTLYRLHGTPEWKSIGK---AVSSGCVR 211 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + P Sbjct: 212 LVNQDVIDLYKRVPYHAP 229 >gi|317124408|ref|YP_004098520.1| peptidoglycan-binding protein [Intrasporangium calvum DSM 43043] gi|315588496|gb|ADU47793.1| Peptidoglycan-binding domain 1 protein [Intrasporangium calvum DSM 43043] Length = 679 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 30/148 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA------- 83 + + ++ D + + +A ++++A Sbjct: 548 LAMGSRGAAVRTLQRALGGVAVDGVFGSLTR-----------DKVAALQRSLALPQTGVV 596 Query: 84 --FYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 ++L +P R L LG++ V ++ L + + FD Sbjct: 597 TPEVWEVLESREFPFAAHRTTVLRLGDTGPQVSAVQRVLGV--------RPTGVFDERTR 648 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +AVK Q R GL +G+V S T + Sbjct: 649 AAVKEAQARAGLASTGVVASRTWSLFDR 676 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 17/136 (12%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII---SKETIAQTEKAIAFYQD 87 + + E + + + N + + ++ + +A Q+ Sbjct: 220 LSFGMQSEAVRQLQVRLGNLPTTGYYGAMTRDRVTEYQRFAGLPQTGVADLRT-----QE 274 Query: 88 ILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 IL++ GW + L G +S +V+ L+ +L S + F + + V + Sbjct: 275 ILAKRGWRTVSAAFPTLSYGMTSSAVRTLQTKL-------GSLPTTGYFGSLTKDRVLAY 327 Query: 146 QMRHGLDPSGMVDSST 161 Q GL +G D T Sbjct: 328 QKFVGLPQTGTADPVT 343 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 10/132 (7%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + + + N + + ++ + T A Q++L Sbjct: 368 TLSIGTTSAAVKNLQAELGNLPTTGYFGSMTQARVTEY--QKAVGLPATGIADQTTQELL 425 Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GWP L +G +S +VQ L+ RL + + F + + V +Q Sbjct: 426 YTKGWPT-TYPTLSVGMTSTAVQNLQARL-------GNLPTTGYFGSMTRARVIEYQRFV 477 Query: 150 GLDPSGMVDSST 161 GL +G+ D+ T Sbjct: 478 GLATTGVADNRT 489 Score = 43.1 bits (100), Expect = 0.082, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + GG L +G +S +V+ L+ G+L + F + ++ V +Q Sbjct: 356 ATSGGGTATTYPTLSIGTTSAAVKNLQ---AELGNLPTTG----YFGSMTQARVTEYQKA 408 Query: 149 HGLDPSGMVDSST 161 GL +G+ D +T Sbjct: 409 VGLPATGIADQTT 421 >gi|291485863|dbj|BAI86938.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. natto BEST195] Length = 313 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP V+R+++ L + G+ + +AVK FQ Sbjct: 232 ALPSGTFKVTNPMRKGDDVRRIQKALAALYFYPDKGAKNNGIDGVYGPKTANAVKRFQSM 291 Query: 149 HGLDPSGMVDSSTLEAMN 166 +GL G+ S T + Sbjct: 292 YGLTQDGIYGSKTKAKLE 309 >gi|56420766|ref|YP_148084.1| sporulation specific N-acetylmuramoyl-L-alanine amidase [Geobacillus kaustophilus HTA426] gi|56380608|dbj|BAD76516.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Geobacillus kaustophilus HTA426] Length = 264 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + + F A++ FQ +GL G Sbjct: 25 AFSPQVIQRGAVGDDVIELQARLQYLGFY--NGKIDGVFGWRTYWALRNFQYEYGLPVDG 82 Query: 156 MVDSSTLEAM 165 + S T + Sbjct: 83 LAGSETKRKL 92 >gi|20808962|ref|NP_624133.1| periplasmic protease [Thermoanaerobacter tengcongensis MB4] gi|20517627|gb|AAM25737.1| Periplasmic protease [Thermoanaerobacter tengcongensis MB4] Length = 453 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 22/128 (17%) Query: 79 EKAIAFY-----QDILSRGGWPEL------------PIRPLHLGNSSVSVQRLRERLIIS 121 + IA Y + I G P++ L +G+ V+ L++ L + Sbjct: 328 KLTIARYKLPSGRYIGKEGLTPDVYVKNVQYTADIKFGGELKIGSRGNEVKILQKYLNLL 387 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV---PVDLRIRQLQV 178 + F +AVK Q + GL P+G+ D +T A+ ++ + L+ Sbjct: 388 KF--NAGPEDGIFGPKTANAVKELQKKAGLSPTGVFDKNTYNALLKMIDSLNNKDAVLEK 445 Query: 179 NLMRIKKL 186 L ++ + Sbjct: 446 ALELLRNM 453 >gi|323339888|ref|ZP_08080157.1| carboxy-terminal processing protease CtpA [Lactobacillus ruminis ATCC 25644] gi|323092761|gb|EFZ35364.1| carboxy-terminal processing protease CtpA [Lactobacillus ruminis ATCC 25644] Length = 481 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L L +S SV+ L++ L G + + F + AV+ +Q + L +G D+ Sbjct: 395 KELKLDDSGSSVESLQKMLNFLGY--DAGKENGYFSEKTQKAVEAYQKENKLTVNGKADT 452 Query: 160 STLEAMNVPVDLRIRQ 175 TL + + +I Q Sbjct: 453 KTLTTLETQISQKINQ 468 >gi|209548546|ref|YP_002280463.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534302|gb|ACI54237.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 204 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 43/182 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E V+V+ PA V +R V VGR Sbjct: 42 QVPIDKIKPELRRQEVAYETTHAAGTVVVDTPARRAYYVLGDGRAVRYGVGVGREG-LAF 100 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 ++ I R P W ++ +++ Sbjct: 101 AGNAYIGRKAEWPSWTPTENMQRRE----------------------------------- 125 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + Y +H T +P +SGC+R+ Sbjct: 126 -ERYRKLAGGMPGGPNNPLGARAMYLYRGGGDTHFRIHGTNQPQSIG---LAMSSGCIRM 181 Query: 347 RN 348 N Sbjct: 182 MN 183 >gi|119943964|ref|YP_941644.1| general secretion pathway ATPase protein [Psychromonas ingrahamii 37] gi|119862568|gb|ABM02045.1| General secretion pathway ATPase protein [Psychromonas ingrahamii 37] Length = 584 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 4/141 (2%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 LS + L ++ S + D ++ A + DS +I + I +E Sbjct: 427 LSCYSENTSLKKLKQLNYPSVVRLERDNLESLHAVLYAINDSYQLLIDGQVIEVSETWFN 486 Query: 84 FYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y W P L G S + L +L + FD + Sbjct: 487 TYWSGELTVLWQAPFELQGNLKFGQQSEQIAWLARQLNKLQGMPIESK--NRFDLPLLQQ 544 Query: 142 VKLFQMRHGLDPSGMVDSSTL 162 V FQ+ +GL G+V TL Sbjct: 545 VMRFQIENGLKDDGIVGERTL 565 >gi|327190701|gb|EGE57783.1| hypothetical protein RHECNPAF_397007 [Rhizobium etli CNPAF512] Length = 268 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 71/227 (31%), Gaps = 46/227 (20%) Query: 144 LFQMRHGLDPSG----MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 F +GL + + + + + ++Q +R + + V+V+ Sbjct: 75 QFNQTYGLPVTNPVHATMYGELRDEDFTLPAIPVSRVQPQYLRQEVDYQTAERPGTVVVD 134 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 A L VE +R V +GR D I P W P ++ + Sbjct: 135 TKARFLYFVEGNGKAMRYGVGLGR-DGYAWSGRGVIQWKQKWPRWTPPAEMVSRQ----- 188 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YS 317 + +++ +PG N + + + Sbjct: 189 -----------------------PDVRAFSAENGGM-----NPGLQNPLGARAMYIFKDG 220 Query: 318 RNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++ Y +H TP+ +SGCVR+ ++++DL L Sbjct: 221 QDTLYRIHGTPDWQSIGK---ATSSGCVRMLNQDVVDLYDRLPARAE 264 >gi|153871860|ref|ZP_02000922.1| Peptidoglycan-binding domain 1 [Beggiatoa sp. PS] gi|152071675|gb|EDN69079.1| Peptidoglycan-binding domain 1 [Beggiatoa sp. PS] Length = 134 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P LP + +G ++ +V +R+ L I G LS FD ++ + FQ + L Sbjct: 51 PVLPPPVIKVGMTNDTVLWIRKHLDTIEGIRSELLTLSPRFDYPLKRRIIEFQRQQKLHA 110 Query: 154 SGMVDSSTLEAMNV 167 G+V T+ A+ Sbjct: 111 DGVVGEQTMLALQA 124 >gi|56963635|ref|YP_175366.1| spore cortex-lytic enzyme [Bacillus clausii KSM-K16] gi|56909878|dbj|BAD64405.1| spore cortex-lytic enzyme [Bacillus clausii KSM-K16] Length = 296 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 5/160 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G + V L+ RL G + + F AV+ +Q +GL+ G Sbjct: 30 AFSDQVIQKGATGDDVVELQSRLQYVGYY--NGKIDGVFGWGTYWAVRHYQYEYGLEIDG 87 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 +V + D + L +K G + P S + + K Sbjct: 88 LVGDDMKAKLASTTDYDKAFVTKALNEGRKF-SHYGGTPKDIQKGPKGSADKQKQKKEAA 146 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + Q + + I +P D+ Sbjct: 147 KGGEAQQPAPNQPETGNEQEPII--EKANNVPSGYSSNDI 184 >gi|302390876|ref|YP_003826696.1| ErfK/YbiS/YcfS/YnhG family protein [Acetohalobium arabaticum DSM 5501] gi|302202953|gb|ADL11631.1| ErfK/YbiS/YcfS/YnhG family protein [Acetohalobium arabaticum DSM 5501] Length = 171 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 19/92 (20%) Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 A+ S I+F + +H T +P L ++GCVR+ N + D+ + T Sbjct: 53 NPGGALGSRWIQFTWQ-THGIHGTNQPWLIGQ---AVSNGCVRMYNTDVKDIYKQVEVGT 108 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 P HI + + P + +Y Sbjct: 109 PI----HIYNNLNS---------NPNPDYTIY 127 >gi|187778003|ref|ZP_02994476.1| hypothetical protein CLOSPO_01595 [Clostridium sporogenes ATCC 15579] gi|187774931|gb|EDU38733.1| hypothetical protein CLOSPO_01595 [Clostridium sporogenes ATCC 15579] Length = 125 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 + + +H T P ++GC+R+ N +I+L + Sbjct: 63 NPGGPFGARWLGLNIPYGDYGIHGTNTPSSIGKS---VSNGCIRMFNNQVIELSNLVPIG 119 Query: 360 T 360 T Sbjct: 120 T 120 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +++N A +L N V V VG+ TP +I NP Sbjct: 16 YRIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINRAINPGG 66 >gi|89099115|ref|ZP_01171994.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. NRRL B-14911] gi|89086245|gb|EAR65367.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. NRRL B-14911] Length = 285 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + + F A++ FQ GL G Sbjct: 32 AFSAQVIQHGAVGDDVIELQSRLQYLGFY--NGKIDGVFGWGTYWALRNFQYEFGLPIDG 89 Query: 156 MVDSSTLEAMNV 167 + T + Sbjct: 90 LAGQETKAKLAK 101 >gi|168186698|ref|ZP_02621333.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum C str. Eklund] gi|169295310|gb|EDS77443.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum C str. Eklund] Length = 309 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 19/154 (12%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LG V+ L+ L G F + E A+ FQ R+ L+ + S Sbjct: 85 PLRLGCKGNDVKALQNNLNKFGY---KINADGIFGSSTEIALYDFQRRNNLNRDCIAGES 141 Query: 161 TLEAMNV--------PVDLRIRQLQVNLMRIKKLLEQKMG----LRYVLVNIPAASLEAV 208 TL+ + + I +N + + ++ Y+ VN Sbjct: 142 TLKRLALEPTEKTMYDPKDNIFSPVINSNSSESFINKRNANSQTDYYIWVNTNTPKTYIF 201 Query: 209 ENG----KVGLRSTVIVGRVDRQTPILHSRINRI 238 + K+ + VG+ T ++ Sbjct: 202 KGYNHHWKLIKSMSCTVGKSSSPTIKGTFKVGNK 235 >gi|159184495|ref|NP_353867.2| hypothetical protein Atu0845 [Agrobacterium tumefaciens str. C58] gi|159139804|gb|AAK86652.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 257 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 42/195 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +++ R + + V+V+ + L VE G +R V +GR D Sbjct: 92 PAVPYQKIDRRYYRQRVVDPTGERPGTVVVDTRSRFLYVVEQGGSAMRYGVGIGR-DGFA 150 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + E V + Sbjct: 151 WSGEGVIQWRQKWPKWTPPDEMVARQ----------------------------PELVKY 182 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYS-RNNTY-MHDTPEPILFNNVVRFETSGCVR 345 +S PG N + + + F + ++ Y +H +PE +SGCVR Sbjct: 183 SSKNGGM-----PPGLKNPLGARALYIFQNGKDTLYRLHGSPEWNSIGK---AVSSGCVR 234 Query: 346 V--RNIIDLDVWLLK 358 + +++IDL + + Sbjct: 235 LMNQDVIDLYDRVPQ 249 >gi|254230373|ref|ZP_04923757.1| general secretion pathway protein A [Vibrio sp. Ex25] gi|262392387|ref|YP_003284241.1| general secretion pathway protein A [Vibrio sp. Ex25] gi|151937111|gb|EDN55985.1| general secretion pathway protein A [Vibrio sp. Ex25] gi|262335981|gb|ACY49776.1| general secretion pathway protein A [Vibrio sp. Ex25] Length = 538 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L L + + + FD ++ V+LFQ G+ Sbjct: 450 WQAPLKETLRLDMEGPAIEVLDRLLAEA--VSEPLLETSIFDGAMKERVELFQRWQGIGV 507 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TL+ + V QL Sbjct: 508 DGIAGKRTLDRLQQNVQPDAPQLA 531 >gi|182678754|ref|YP_001832900.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634637|gb|ACB95411.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 199 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 44/172 (25%) Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 V R + ++V+ L V +R + VGR + + Sbjct: 52 AVAPARETVSYSTRYAPGTIVVSTDERRLYYVLPNNQAIRYGIGVGRPGFE-WHGVKTVA 110 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 P W P ++++ P+ Sbjct: 111 MKREWPSWTPPAQMLRRR---------------------------------------PDL 131 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP +SGC+R+ N Sbjct: 132 PRFMPGGPDNPLGARALYIG-GTLYRIHGSNEPETIGQ---AVSSGCIRMTN 179 >gi|319651171|ref|ZP_08005303.1| hypothetical protein HMPREF1013_01915 [Bacillus sp. 2_A_57_CT2] gi|317397153|gb|EFV77859.1| hypothetical protein HMPREF1013_01915 [Bacillus sp. 2_A_57_CT2] Length = 498 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L L SS V+ ++ L G FD E AVK FQ L+ +G++ Sbjct: 405 PDTELKLSVSSAQVKAGQQMLKALGY--DPGREDGFFDEKTEQAVKEFQAAEKLEQNGVL 462 Query: 158 -DSSTLEAMNV 167 STL M Sbjct: 463 SGQSTLRLMEK 473 >gi|307946023|ref|ZP_07661358.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] gi|307769687|gb|EFO28913.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] Length = 235 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 8/66 (12%) Query: 301 DPGKINAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 PG N + + ++ + + Y +H T P +SGC+R+ +++IDL Sbjct: 162 PPGLKNPLGARAMDLWQGSVDTLYRIHGTNSPNSIGKS---VSSGCIRMWQQDVIDLFER 218 Query: 356 LLKDTP 361 + T Sbjct: 219 VPLRTK 224 >gi|296332967|ref|ZP_06875424.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674929|ref|YP_003866601.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. spizizenii str. W23] gi|296149818|gb|EFG90710.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413173|gb|ADM38292.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. spizizenii str. W23] Length = 303 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 53/166 (31%), Gaps = 11/166 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 29 AFSNQVIQRGATGDDVVELQARLQYNGYY--NGKIDGVYGWGTYWAVRNFQDQFGLKEVD 86 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVENGK- 212 G+V + T + + + L + K+ L+Y AA+ +A + + Sbjct: 87 GLVGAKTKQTLISKSKYYREYVMEQLNKGNTFTHYGKIPLKYQTKPSKAATQKARQQAEA 146 Query: 213 ------VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 + TP + + N + I+ Sbjct: 147 RQKQPAEKTTQQPKANKQQNNTPAKAREQDAVAANMPGGFSNNDIR 192 >gi|325292223|ref|YP_004278087.1| hypothetical protein AGROH133_04590 [Agrobacterium sp. H13-3] gi|325060076|gb|ADY63767.1| hypothetical protein AGROH133_04590 [Agrobacterium sp. H13-3] Length = 241 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 66/195 (33%), Gaps = 42/195 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +++ R + + V+V+ + L VE G +R V +GR D Sbjct: 76 PAVPYQKIDRRYYRQRVVDPTGERPGTVVVDTRSRFLYVVEQGGSAMRYGVGIGR-DGFA 134 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + E V + Sbjct: 135 WSGEGVIQWRQKWPKWTPPDEMVARQ----------------------------PELVKY 166 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYS-RNNTY-MHDTPEPILFNNVVRFETSGCVR 345 +S PG N + + + F + ++ Y +H +PE +SGCVR Sbjct: 167 SSKNGGM-----PPGLKNPLGARALYIFQNGKDTLYRLHGSPEWNSIGK---AVSSGCVR 218 Query: 346 V--RNIIDLDVWLLK 358 + +++IDL + + Sbjct: 219 LMNQDVIDLYDRVPQ 233 >gi|190890871|ref|YP_001977413.1| hypothetical protein RHECIAT_CH0001254 [Rhizobium etli CIAT 652] gi|218516834|ref|ZP_03513674.1| hypothetical protein Retl8_26139 [Rhizobium etli 8C-3] gi|190696150|gb|ACE90235.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 268 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 71/227 (31%), Gaps = 46/227 (20%) Query: 144 LFQMRHGLDPSG----MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 F +GL + + + + + ++Q +R + + V+V+ Sbjct: 75 QFNQTYGLPVTNPVHATMYGELRDEDFTLPAIPVSRVQPQYLRQEVDYQTAERPGTVVVD 134 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 A L VE +R V +GR D I P W P ++ + Sbjct: 135 TKARFLYFVEGNGKAMRYGVGLGR-DGYAWSGRGVIQWKQKWPRWTPPAEMVSRQ----- 188 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YS 317 + +++ +PG N + + + Sbjct: 189 -----------------------PDVRAFSAENGGM-----NPGLQNPLGARAMYIFKDG 220 Query: 318 RNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++ Y +H TP+ +SGCVR+ ++++DL L Sbjct: 221 QDTLYRIHGTPDWQSIGK---ATSSGCVRMLNQDVVDLYDRLPARAE 264 >gi|159186531|ref|NP_396125.2| hypothetical protein Atu5196 [Agrobacterium tumefaciens str. C58] gi|159141591|gb|AAK90566.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 238 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ +R + V+V+ P L VENG LR V +GR D + Sbjct: 68 PAVPFERMNPEYLRQRVADPTGEAPGTVVVDTPRRFLYLVENGGTALRYGVGIGR-DGFS 126 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I+ P W P +I + L + + + Sbjct: 127 WEGNGYIHWRQHWPRWKPPSEMIARQ--PELEK---------YSVANGG----------- 164 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVR 345 DPG N + + + F + + Y +H PE +SGCVR Sbjct: 165 -----------MDPGLHNPLGARALYIFQNGEDTLYRLHGNPEWQSIGK---AVSSGCVR 210 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++I+DL + P Sbjct: 211 LMNQDIVDLYDRVPFHAP 228 >gi|294498491|ref|YP_003562191.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium QM B1551] gi|294348428|gb|ADE68757.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium QM B1551] Length = 111 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 6/58 (10%) Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 + +H T +P + + GCVR+ N I++L + TP + Sbjct: 55 FGPLWMGLSKP-TYGIHGTNDPASIGRDM---SHGCVRMDNEDILELSSAVPIGTPVY 108 >gi|291448714|ref|ZP_06588104.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351661|gb|EFE78565.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 503 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Query: 83 AFYQDILSRG-----GWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + + + G W L L G S +V+RL+ L + L + G+ + Sbjct: 410 QRDRSLDADGMVGPKTWTALLSAGTTPLLKQGGSGDAVKRLQRALTAA--LGKTVGVDGS 467 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F ++AV+ +Q L G V +T +A+ Sbjct: 468 FGPATDTAVRNYQDTRKLGVDGQVGPATWKALQ 500 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V ++ L + F + +SAV+ FQ LD GMV T A Sbjct: 371 GSSGPQVTAVQTLLTQQKY--SPGKVDGLFGSDTKSAVEKFQRDRSLDADGMVGPKTWTA 428 Query: 165 M 165 + Sbjct: 429 L 429 >gi|239945248|ref|ZP_04697185.1| putative amidase [Streptomyces roseosporus NRRL 15998] Length = 518 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Query: 83 AFYQDILSRG-----GWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + + + G W L L G S +V+RL+ L + L + G+ + Sbjct: 425 QRDRSLDADGMVGPKTWTALLSAGTTPLLKQGGSGDAVKRLQRALTAA--LGKTVGVDGS 482 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F ++AV+ +Q L G V +T +A+ Sbjct: 483 FGPATDTAVRNYQDTRKLGVDGQVGPATWKALQ 515 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V ++ L + F + +SAV+ FQ LD GMV T A Sbjct: 386 GSSGPQVTAVQTLLTQQKY--SPGKVDGLFGSDTKSAVEKFQRDRSLDADGMVGPKTWTA 443 Query: 165 M 165 + Sbjct: 444 L 444 >gi|182678539|ref|YP_001832685.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634422|gb|ACB95196.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 197 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 48/174 (27%), Gaps = 45/174 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++ + G ++V+ L V V VGR + + R Sbjct: 55 QLVIWNHPEYGKGTIVVSTKERRLYYVLGEDRAYEYGVGVGREG-FSWAGTKTVTRKREW 113 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 114 PDWHPPAQMLKRR---------------------------------------PDLPKYMP 134 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G N + + + S N +H + EP +SGC+R+ N D+ Sbjct: 135 GGMDNPLGARALYLGSSN-YRIHGSNEPDTIGA---AVSSGCIRMTN-RDIVDL 183 >gi|167749731|ref|ZP_02421858.1| hypothetical protein EUBSIR_00698 [Eubacterium siraeum DSM 15702] gi|167751426|ref|ZP_02423553.1| hypothetical protein EUBSIR_02422 [Eubacterium siraeum DSM 15702] gi|167655672|gb|EDR99801.1| hypothetical protein EUBSIR_02422 [Eubacterium siraeum DSM 15702] gi|167657354|gb|EDS01484.1| hypothetical protein EUBSIR_00698 [Eubacterium siraeum DSM 15702] gi|291531931|emb|CBK97516.1| Cell Wall Hydrolase./Putative peptidoglycan binding domain [Eubacterium siraeum 70/3] Length = 231 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 11/141 (7%) Query: 61 MGIDSDIPII---SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 I P S I I + G + G+ V+ +++ Sbjct: 2 EYIRQLNPFYKMMSVTVIIFLISGI--FSAFAENGNNESVTAYSQK-GSQGSEVEAVQQT 58 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD--LRIRQ 175 L G + ++ F E A+ FQ + GL +G+ D++TL+ + + + Sbjct: 59 LKDRGLF--NAEVTGYFGEKTEEAILRFQKQQGLAQTGVADNATLKRLGISIGSIPPATT 116 Query: 176 LQVNLMRIKKLLEQKMGLRYV 196 +NL+ + + + G Y+ Sbjct: 117 ANINLL-ARIISAEGRGEPYI 136 >gi|17232476|ref|NP_489024.1| hypothetical protein alr4984 [Nostoc sp. PCC 7120] gi|17134122|dbj|BAB76683.1| alr4984 [Nostoc sp. PCC 7120] Length = 203 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GNS ++V+ L+ L+ G + F A E+AVK FQ++ L G+V + Sbjct: 140 TLRFGNSGLAVRALQRLLVAKGYAIR---VDGNFGALTETAVKAFQIQRNLSVDGVVGFN 196 Query: 161 TLEAMNV 167 T ++ Sbjct: 197 TWYSLTR 203 >gi|312876696|ref|ZP_07736676.1| carboxyl-terminal protease [Caldicellulosiruptor lactoaceticus 6A] gi|311796536|gb|EFR12885.1| carboxyl-terminal protease [Caldicellulosiruptor lactoaceticus 6A] Length = 472 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + V ++RL G L D +AVK FQ + L PSG++ Sbjct: 380 ATKKFKKGDMDLEVLAAQQRLFYLGYLSSWTA---KMDDSTVAAVKKFQKDNRLYPSGVL 436 Query: 158 DSSTLEAMNVPVDL 171 D +T + +N Sbjct: 437 DITTQKKLNEKFSE 450 >gi|239991710|ref|ZP_04712374.1| putative amidase [Streptomyces roseosporus NRRL 11379] Length = 517 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Query: 83 AFYQDILSRG-----GWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + + + G W L L G S +V+RL+ L + L + G+ + Sbjct: 424 QRDRSLDADGMVGPKTWTALLSAGTTPLLKQGGSGDAVKRLQRALTAA--LGKTVGVDGS 481 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 F ++AV+ +Q L G V +T +A+ Sbjct: 482 FGPATDTAVRNYQDTRKLGVDGQVGPATWKALQ 514 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V ++ L + F + +SAV+ FQ LD GMV T A Sbjct: 385 GSSGPQVTAVQTLLTQQKY--SPGKVDGLFGSDTKSAVEKFQRDRSLDADGMVGPKTWTA 442 Query: 165 M 165 + Sbjct: 443 L 443 >gi|209883487|ref|YP_002287344.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] gi|209871683|gb|ACI91479.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] Length = 174 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 44/156 (28%), Gaps = 47/156 (30%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L + + + +R V VG+ ++ +RI+ NP W P + + Sbjct: 50 ERRLYLILDEQHAIRYPVGVGKRGKE-WSGTTRISGKYRNPAWAPPADVKR--------- 99 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNN 320 + P+ + G N M + Sbjct: 100 ------------------------------DHPHLPDVIEGGSPRNPMGVAAMTLAGGE- 128 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDV 354 +H T P F + GCVR+ N DL Sbjct: 129 YAIHGTNVPKSVG---GFVSYGCVRMYNPDITDLFE 161 >gi|23100367|ref|NP_693834.1| N-acetylmuramoyl-L-alanine amidase [Oceanobacillus iheyensis HTE831] gi|22778600|dbj|BAC14868.1| N-acetylmuramoyl-L-alanine amidase [Oceanobacillus iheyensis HTE831] Length = 938 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 10/83 (12%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 E+ +A +++ LG+ ++ ++E+L G + F + Sbjct: 260 ERTLAKLEELA--------STDVFELGDRHNAIIIIKEKLNAIGF--GGISETNYFGGWT 309 Query: 139 ESAVKLFQMRHGLDPSGMVDSST 161 E+ VK FQ +GL G V +T Sbjct: 310 ETRVKQFQQYYGLSVDGKVGPAT 332 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+ P G L+E+L G +S + Y +S VK FQ GL +G Sbjct: 477 EVYNSPFQAGKRHEDTIELKEKLNRLGY--GHITVSTLYGNYTKSQVKEFQRDFGLVVNG 534 Query: 156 MVDSSTL 162 + D +T Sbjct: 535 IADENTW 541 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 17/200 (8%) Query: 87 DILSRGGWPELPIRPLH----LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I W +L LG+ + ++++L G + F + E+ V Sbjct: 534 GIADENTWIKLNEVYYKTGFQLGDRHEDIIEIKKQLNAIGF--GGITETNYFGKWTETRV 591 Query: 143 KLFQMRHGLDPSGMVDSST---LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 + FQ +GL +G D T L + ++ + +KL G V Sbjct: 592 EQFQRYYGLSVTGTADEQTQQKLSDVYNSPYQNGKRHDGTIELKEKLNRIGFGYITVSTL 651 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 + + V+ + V G D T + + I R I K+M+ Sbjct: 652 YGSFTESQVKKFQEYYGLKV-NGIADEVTMDMINEIYNSPLQKGKSDSRVIEMKEML--- 707 Query: 260 RQDPQYLKDNNIHMIDEKGK 279 L + I + D G Sbjct: 708 ----NALGYDGITISDYFGN 723 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 18/147 (12%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT-------E 79 P E + E + + FD G ++ + +T Q + Sbjct: 132 ASIPYEKGDRHEDLVEIKEKLNHIGFDGITETDYFGNWTETRVTQFQTYYQLSVTGKVDQ 191 Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 K I + P G + ++E+L G ++ F Y+E Sbjct: 192 KTINKLD---------SVYNSPFQNGKRHEDTKAIKEKLNSIGY--GPITVTTLFGNYME 240 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S VK FQ GL +G+ D TL + Sbjct: 241 SQVKEFQRDQGLRVNGIADERTLAKLE 267 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 +A +++ LG+ ++ ++++L G + F + E+ Sbjct: 402 LAKLEELA--------STDVFELGDRHSAIITIKQKLNAIGF--DRISETDYFGGWTETR 451 Query: 142 VKLFQMRHGLDPSGMVDSST 161 V+ FQ + L+ +G D +T Sbjct: 452 VRQFQEYYNLNVTGKADEAT 471 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 10/92 (10%) Query: 83 AFYQDILSRGG--------WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Y + G ++ P G L+E+L G +S + Sbjct: 595 QRYYGLSVTGTADEQTQQKLSDVYNSPYQNGKRHDGTIELKEKLNRIGF--GYITVSTLY 652 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++ ES VK FQ +GL +G+ D T++ +N Sbjct: 653 GSFTESQVKKFQEYYGLKVNGIADEVTMDMIN 684 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P G + ++E+L G ++ F Y+ES VK FQ GL +G Sbjct: 338 SVYNSPFQNGKRHEDTKAIKEKLNSIGY--GPITVTTLFGNYMESQVKEFQRDQGLRENG 395 Query: 156 MVDSSTLEAMN 166 + D+ TL + Sbjct: 396 IADAPTLAKLE 406 >gi|113477597|ref|YP_723658.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110168645|gb|ABG53185.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 414 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 50/166 (30%), Gaps = 4/166 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V+ L+ERL G L F E AV F+ + + Sbjct: 171 RVLVRGSEGSDVKILQERLKDLGYYLGE--LDAIFGRQTELAVIDFKKDYFGITTDNATV 228 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 ++ + D + + K L R L+ ++GK+ R V Sbjct: 229 ESITWKKLWGDPLPKPPVLPPTSKKNYLLLTKTSRKDRYGCYVLHLDYFKSGKLEDRLEV 288 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 G RQ + + D++ QD Y Sbjct: 289 CCGAPGRQ--FFRTAARSRAMTGEPLPEGKWYINDIIWADGQDNYY 332 >gi|182433829|ref|YP_001821548.1| hypothetical protein SGR_36t [Streptomyces griseus subsp. griseus NBRC 13350] gi|182440894|ref|YP_001828613.1| hypothetical protein SGR_7103t [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462345|dbj|BAG16865.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469410|dbj|BAG23930.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 142 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ LI G + F +AV FQ GLD G+V ++T Sbjct: 80 GDTGDRVREIQCLLIFKGF--GVGAVDGDFGPATRTAVVAFQKNRGLDYDGIVGANTWRK 137 Query: 165 MNV 167 + V Sbjct: 138 LRV 140 >gi|117164603|emb|CAJ88149.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces ambofaciens ATCC 23877] Length = 244 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S V +L+ R+ + A +AVK FQ +GL G+ S Sbjct: 40 RTLSEGSSGSDVTQLQIRVAGWVTSGERLSYDGQYGARTAAAVKKFQAAYGLSADGVAGS 99 Query: 160 STLEAM 165 +T + Sbjct: 100 ATFSKI 105 >gi|229085545|ref|ZP_04217781.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-44] gi|228697766|gb|EEL50515.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-44] Length = 252 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 9/149 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + + G S V L+ RL +G + + F A++ FQ + GL Sbjct: 31 QAFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQQKFGLPVD 88 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ S T + M V + + + N+P + Sbjct: 89 GLAGSKT-KQMLVKATKYEKSTANKGN--TGGGQASKPTQNKGTNVPNG----YSQNDIQ 141 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPY 243 L + + G + + + ++ N Sbjct: 142 LMANAVYGESRGEPYLGQVAVAAVILNRV 170 >gi|227549428|ref|ZP_03979477.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium lipophiloflavum DSM 44291] gi|227078505|gb|EEI16468.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium lipophiloflavum DSM 44291] Length = 369 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 18/135 (13%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH---- 103 + D +D + + S ++ +A++ KA + I+ G + +R L Sbjct: 1 MLDGYDGKVGEWNSRQFSHEEMLFDAHLAESLKAFQQSRGIVPTGDIDTVTLRELREASY 60 Query: 104 -LGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 LG V+RL+E+L G + F+ A+ +Q+ GL Sbjct: 61 TLGARVLSFQPNQIMVGDDVRRLQEQLQELGFYSHR--VDGHFNRQTHKALVNYQINSGL 118 Query: 152 DPSGMVDSSTLEAMN 166 + G+ S+TL A++ Sbjct: 119 EGDGVCGSATLHALS 133 >gi|311068413|ref|YP_003973336.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage-related protein [Bacillus atrophaeus 1942] gi|310868930|gb|ADP32405.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage-related protein [Bacillus atrophaeus 1942] Length = 274 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP +V ++++ L + G+ + A +AVK FQ Sbjct: 193 TLPSGIFKVKSPLMKGAAVTKIQKALAALYFYPDKGAENNGIDGYYGAKTANAVKRFQSM 252 Query: 149 HGLDPSGMVDSSTLEAMNVPVD 170 +GL G+ + + Sbjct: 253 YGLTADGIYGPKSKAKLESLPK 274 >gi|288921344|ref|ZP_06415625.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] gi|288347255|gb|EFC81551.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] Length = 247 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 96 ELPIRPLHLGNSSVS--VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 + + LG S V ++++L G + F V FQ +HGL P Sbjct: 177 TVDSGYMRLGVSGPRWDVSLVQDQLRKLGY---PIVVDGYFGPQTNHMVIDFQKKHGLVP 233 Query: 154 SGMVDSSTLEAM 165 G++ T +A+ Sbjct: 234 DGVIGPLTHKAL 245 >gi|254562159|ref|YP_003069254.1| hypothetical protein METDI3765 [Methylobacterium extorquens DM4] gi|254269437|emb|CAX25403.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 212 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 51/204 (25%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 M + + L R + + ++V L V+ +R V VG Sbjct: 51 AWMTLAPKAPLDP---ALARTTVDFVTREPVGTLVVETAERRLYLVQPSGKAMRYPVSVG 107 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R + I+R + P W +I + Sbjct: 108 RAG-LAWTGRAEIDRKLEWPDWNPAPDMIGRH---------------------------- 138 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFE 339 P+ R + G + + + + ++ Y +H T EP Sbjct: 139 -----------PDLPSRLEGGPFSPIGARALYLAQNRKDTLYRIHGTNEPETIGQ---AV 184 Query: 340 TSGCVRV--RNIIDLDVWLLKDTP 361 +SGC+R+ +++DL + T Sbjct: 185 SSGCIRMLNEDVMDLYERVPVGTK 208 >gi|16079350|ref|NP_390174.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|221310211|ref|ZP_03592058.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|221314534|ref|ZP_03596339.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319456|ref|ZP_03600750.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. JH642] gi|221323732|ref|ZP_03605026.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. SMY] gi|1730903|sp|P50739|SLEB_BACSU RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; Flags: Precursor gi|1146210|gb|AAC83957.1| spore cortex lytic enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|1688023|dbj|BAA11473.1| spore-cortex-lytic enzyme prepeptide [Bacillus subtilis] gi|2634711|emb|CAB14209.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. 168] Length = 305 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 29 AFSNQVIQRGATGDDVVELQARLQYNGYY--NGKIDGVYGWGTYWAVRNFQDQFGLKEVD 86 Query: 155 GMVDSST 161 G+V + T Sbjct: 87 GLVGAKT 93 >gi|84686748|ref|ZP_01014635.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84665179|gb|EAQ11658.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacterales bacterium HTCC2654] Length = 179 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 51/206 (24%) Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G +T A V + R VN R + G +V+ + L + + Sbjct: 2 GCFLPTTAWAHKVKLPERFEPQLVNTRRGDWV----KGDVHVVPD--DFFLYFMLEDGMA 55 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 +R V VGR P + R P+W ++I+++ + Sbjct: 56 IRYGVGVGRKGLYEP-GEFTVARKAKWPWWRPTNAMIRREPRKYAK-------------- 100 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN--TY--MHDTPEPI 330 + G N + + + Y TY +H T P Sbjct: 101 ---------------------YKDGLKGGPNNPLGARALYLYDAEGRDTYLRIHGTNAPE 139 Query: 331 LFNNVVRFETSGCVRVRN--IIDLDV 354 + ++GC R+ N + DL Sbjct: 140 TIGS---AVSNGCARLTNEHVKDLYE 162 >gi|115524050|ref|YP_780961.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisA53] gi|115517997|gb|ABJ05981.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 424 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 58/192 (30%), Gaps = 48/192 (25%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 P QL +L R + K ++V+ L + G +R V VGR D Sbjct: 216 EQPEAETNIQLPPHLRRQEVSFPTKEPAGTIVVDTANTHLYYILGGGRAVRYGVRVGR-D 274 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 T +I+R P W P +I++ Sbjct: 275 GFTWNGVQKISRKAEWPDWHPPSEMIERQ------------------------------- 303 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 P G N M + + S Y +H T +P F +SGC+ Sbjct: 304 --------PYLPRFMAGGPGNPMGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCI 350 Query: 345 RVRN--IIDLDV 354 + N + DL Sbjct: 351 GMLNDDVSDLFE 362 >gi|86357640|ref|YP_469532.1| hypothetical protein RHE_CH02021 [Rhizobium etli CFN 42] gi|86281742|gb|ABC90805.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 203 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 46/176 (26%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++G +++ +L + + VGR +Q +R+ +P W Sbjct: 66 PSTRVGRGTIVIATREHTLIYTTSEGEQFAYPIAVGREGKQ-WYGTTRVVSKRLHPEWRP 124 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 S+ QK P PG N Sbjct: 125 TASMRQK---------------------------------------NPRLPAVVKPGPAN 145 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 + + I +H T +P +SGC R+ ++ +L + T Sbjct: 146 PLGTRAIYLADG-LLRIHGTNDPSSIGTN---ASSGCFRMYREDVEELYDMVQPGT 197 >gi|154246768|ref|YP_001417726.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] gi|154160853|gb|ABS68069.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] Length = 419 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 50/186 (26%), Gaps = 46/186 (24%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + R ++++ P L V G +R + VGR T Sbjct: 237 DPTEPVPERFRRQTVDYVTTQPAGTIIIDTPNTYLYYVVGGGKAIRYGIGVGREG-FTWS 295 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 +I+R P W P +IQ+ Sbjct: 296 GTQKISRKAEWPDWRPPSEMIQRQ------------------------------------ 319 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P G N M + + S +H T EP F +SGC R+ N Sbjct: 320 ---PYLPRFMAGGPGNPMGARALYLGSTE-YRIHGTNEPQTIGK---FVSSGCFRLLNAD 372 Query: 351 --DLDV 354 DL Sbjct: 373 IEDLFD 378 >gi|291484719|dbj|BAI85794.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. natto BEST195] Length = 305 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 29 AFSNQVIQRGATGDDVVELQARLQYNGYY--NGKIDGVYGWGTYWAVRNFQDQFGLKEVD 86 Query: 155 GMVDSST 161 G+V + T Sbjct: 87 GLVGAKT 93 >gi|321311765|ref|YP_004204052.1| spore cortex-lytic enzyme [Bacillus subtilis BSn5] gi|320018039|gb|ADV93025.1| spore cortex-lytic enzyme [Bacillus subtilis BSn5] Length = 305 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 29 AFSNQVIQRGATGDDVVELQARLQYNGYY--NGKIDGVYGWGTYWAVRNFQDQFGLKEVD 86 Query: 155 GMVDSST 161 G+V + T Sbjct: 87 GLVGAKT 93 >gi|146343599|ref|YP_001208647.1| putative ErfK/YbiS/YcfS/YnhG [Bradyrhizobium sp. ORS278] gi|146196405|emb|CAL80432.1| conserved hypothetical protein; putative signal peptide; putative ErfK/YbiS/YcfS/YnhG [Bradyrhizobium sp. ORS278] Length = 197 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 51/185 (27%), Gaps = 19/185 (10%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + G + LV L R V+ R P ++ Y V P Sbjct: 28 SEDPGDQPGLVADDGYEL------DPEWRKQVVYFR--TTEPPGTIIVSTAERYLYLVQP 79 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + + + R + + I +K + P G N Sbjct: 80 GGRAIRYGIGVGRDG---FQWQGLLQITKKAEWPDWTPPPEMIQRQPYLPRFMAGGPGNP 136 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWS 364 + + + Y +H T +P +SGC R+ N DL + T Sbjct: 137 LGARAMYL--GTTVYRIHGTNQPWTIGTK---ISSGCFRLVNADVADLFDRVPVGTKVVV 191 Query: 365 RYHIE 369 R E Sbjct: 192 RQKPE 196 >gi|239831235|ref|ZP_04679564.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] gi|239823502|gb|EEQ95070.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] Length = 265 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 42/183 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 L + ++ +R + + ++V+ A L V+ G +R +V VGR T Sbjct: 88 PALDVSKIADRNLRREVDYATNEPVGTIVVDPYARYLYLVQPGGKAIRYSVGVGRAG-LT 146 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +++ P W ++I +++P++ Sbjct: 147 FSGDAKVAYKSQWPRWTPTANMI--------KRNPEHYAK-------------------- 178 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + + G N + + + Y ++ Y +H T EP +SGC+R Sbjct: 179 -------YANGLEGGIRNPLGARALYLYRDGKDTLYRIHGTNEPWSVGK---AASSGCIR 228 Query: 346 VRN 348 + N Sbjct: 229 LYN 231 >gi|222085235|ref|YP_002543765.1| hypothetical protein Arad_1387 [Agrobacterium radiobacter K84] gi|221722683|gb|ACM25839.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 268 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 42/189 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +++ +R + + ++V+ + L VE G +R V +G Sbjct: 104 PAIPYKRIDPQFLRQEVDYQTNERPGTIVVDTRSHYLYFVEPGGRAMRYGVGLGAAG-YA 162 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ ++ +R P + + Sbjct: 163 WHGRGVIQWKAKWPRWTPPAEMVARE--PQIR--PISAERGGM----------------- 201 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 +PG N + + + ++ Y +H TP+ R +SGCVR Sbjct: 202 ------------NPGPTNPLGARALYIFKDGKDTLYRVHGTPDWQSIG---RAASSGCVR 246 Query: 346 V--RNIIDL 352 + +++IDL Sbjct: 247 MLNQDVIDL 255 >gi|218463531|ref|ZP_03503622.1| hypothetical protein RetlK5_30714 [Rhizobium etli Kim 5] Length = 293 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 46/227 (20%) Query: 144 LFQMRHGLDPSG----MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 F +GL + + + + + ++Q +R + + V+V+ Sbjct: 100 QFHQTYGLPVTNPVHAAMYGELRDEDFTQPSIPVSRVQPQFLRQEVDYQTTERPGTVVVD 159 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 A L VE +R V +GR D I P W P +M++ Sbjct: 160 TKARFLYFVEGNGKAMRYGVGLGR-DGYAWSGRGVIQWKQKWPRWTPPV-----EMVSRQ 213 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YS 317 + + +N +PG N + + + Sbjct: 214 PEVRAFSVENGGM----------------------------NPGLQNPLGARAMYIFKDG 245 Query: 318 RNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++ Y +H TP+ +SGCVR+ ++++DL L Sbjct: 246 QDTLYRIHGTPDWQSIGK---ATSSGCVRMLNQDVVDLYDRLPAKAE 289 >gi|309811331|ref|ZP_07705118.1| NlpC/P60 family protein [Dermacoccus sp. Ellin185] gi|308434638|gb|EFP58483.1| NlpC/P60 family protein [Dermacoccus sp. Ellin185] Length = 350 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ +V+ ++ +L + F SAVK FQ +GL G+V Sbjct: 52 VLFFGSRGEAVKAIQAQLQV--------NADGIFGPATLSAVKSFQRSNGLYADGIVGKL 103 Query: 161 TLEAMNV 167 T + Sbjct: 104 TWAKLAA 110 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 8/68 (11%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G++ V+ L+ + F + V FQ ++GL G+V Sbjct: 136 TTTLRFGSTHALVKVLQS--------KVGVEVDGIFGRATRAGVVSFQAQNGLYADGIVG 187 Query: 159 SSTLEAMN 166 T + Sbjct: 188 KLTWSKLG 195 >gi|298290305|ref|YP_003692244.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296926816|gb|ADH87625.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 332 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 44/180 (24%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + R ++V+ A L ++ +R + VG+ Q Sbjct: 178 PSTGAKGVDRKFDRHVVRYSSSDPAGTIIVDTGARYLYLIQGDGTAVRYGIGVGKEGFQ- 236 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 RI+R P W P ++ + Sbjct: 237 WAGSERISRKAEWPEWRPPSEMLDRR---------------------------------- 262 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 P+ G+ N + + + ++ +H + EP +SGC+R+RN Sbjct: 263 -----PDLPRVMPGGEDNPLGARALYLG-KSLYRIHGSNEPETIGQ---AVSSGCIRMRN 313 >gi|291439401|ref|ZP_06578791.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291342296|gb|EFE69252.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 390 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 6/78 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L R + + L+ L+ G F + AV FQ R+ L Sbjct: 235 WPLLRKRT---EDQYTRGRALQHLLMAHGY---EVKADGFFGDETQDAVMDFQRRNHLPS 288 Query: 154 SGMVDSSTLEAMNVPVDL 171 G V T A+ PV Sbjct: 289 DGKVGKDTWPALVKPVGP 306 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + + WP L +P+ G +V L+E L +G +S F A ++ FQ Sbjct: 292 VGKDTWPALV-KPVGPGADEHTVLALQELLHNTG--QGGTEVSGEFTAATAEDLRFFQRG 348 Query: 149 HGLDPSGMVDSSTLEAMNV 167 H L P+G D T A+ V Sbjct: 349 HDLPPTGRADVDTWLALLV 367 >gi|260888125|ref|ZP_05899388.1| LysM domain/NLP/P60 family protein [Selenomonas sputigena ATCC 35185] gi|330839997|ref|YP_004414577.1| NLP/P60 protein [Selenomonas sputigena ATCC 35185] gi|260862154|gb|EEX76654.1| LysM domain/NLP/P60 family protein [Selenomonas sputigena ATCC 35185] gi|329747761|gb|AEC01118.1| NLP/P60 protein [Selenomonas sputigena ATCC 35185] Length = 278 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L L + V +L++ L +G L F + +SAV FQ L +G Sbjct: 24 ALAAPILSENSHGHDVFKLQKELKRTGYLSDEP--DGIFGSRTKSAVLAFQRAQSLKETG 81 Query: 156 MVDSSTLEAMN 166 +VD T + Sbjct: 82 VVDRETWSRLQ 92 >gi|163757533|ref|ZP_02164622.1| hypothetical protein HPDFL43_19022 [Hoeflea phototrophica DFL-43] gi|162285035|gb|EDQ35317.1| hypothetical protein HPDFL43_19022 [Hoeflea phototrophica DFL-43] Length = 217 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 55/218 (25%) Query: 153 PSGMVDSST----------LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 G+ ++T +A + I +++ R ++V+ P Sbjct: 25 QDGVSGTTTQIFTSEYGSVKDAGYRIPAVPISKVKDRYHRQIVSYRTLEKPGTIIVDTPN 84 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L V G+ +R + VG+ + I P W P+ +I + L + Sbjct: 85 RYLYFVLPGRKAVRYGIGVGKAGFA-WEGEAYIAWKQAWPKWTPPKEMI--ERKPELAR- 140 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNT- 321 + + PG N + + + ++ + Sbjct: 141 ---YGKDGM-----------------------------KPGLSNPLGARALYLFNEDGED 168 Query: 322 ---YMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 +H TPE +SGC+R+ ++IIDL Sbjct: 169 TLFRLHGTPEWNSIGT---AASSGCIRLMNQDIIDLYD 203 >gi|114707874|ref|ZP_01440767.1| hypothetical protein FP2506_00175 [Fulvimarina pelagi HTCC2506] gi|114536652|gb|EAU39783.1| hypothetical protein FP2506_00175 [Fulvimarina pelagi HTCC2506] Length = 228 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 42/176 (23%) Query: 178 VNLMRIKKLLEQKMGLR--YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 V ++L++ G + ++V+ L V+ G LR + VGR + +R+ Sbjct: 56 VAPQYWRQLVDDPTGEQPGTLVVDPDEKYLYLVQEGGQALRYGIGVGRQG-FSWSGSARV 114 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 P W PR +I++ E +++ Sbjct: 115 QYKKQWPTWTPPREMIERQ----------------------------PELEPYSAANGGM 146 Query: 296 FIFRQDPGKINAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + + + Y +H +PE R +SGC+R+ N Sbjct: 147 -----PPGLSNPLGARALYLFQDGVDTLYRIHGSPEANSIG---RAVSSGCIRLLN 194 >gi|332710724|ref|ZP_08430665.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332350501|gb|EGJ30100.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 368 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V+ +++ L +G S + E VK FQ ++GLD G+V +T Sbjct: 307 QPYMKGEDVRAIQQALAKAGY---SLEPDGVYGPGSEGVVKQFQEQNGLDVDGVVGPATR 363 Query: 163 EAMN 166 M Sbjct: 364 AKMG 367 >gi|291298292|ref|YP_003509570.1| zinc D-Ala-D-Ala carboxypeptidase [Stackebrandtia nassauensis DSM 44728] gi|290567512|gb|ADD40477.1| Zinc D-Ala-D-Ala carboxypeptidase [Stackebrandtia nassauensis DSM 44728] Length = 263 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 4/133 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V++L+ R+ + + F +AVK FQ +GL +G D++T Sbjct: 49 LASGATGDDVKQLQIRVFGYPEYGKQLAVDGQFGPATTAAVKRFQQAYGLSQTGKGDAAT 108 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 D + + G + A +L + + Sbjct: 109 YAKFYELQDDDCTPIHFTYAELNDCNSDWSGGKVSAAEAKANALRVM---WSLEAMRHAL 165 Query: 222 G-RVDRQTPILHS 233 G + T S Sbjct: 166 GDKPITVTSGFRS 178 >gi|116251064|ref|YP_766902.1| hypothetical protein RL1297 [Rhizobium leguminosarum bv. viciae 3841] gi|241203660|ref|YP_002974756.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115255712|emb|CAK06793.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] gi|240857550|gb|ACS55217.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + Q+ R + + ++V+ P+ L V+ + +R V +GR Sbjct: 79 PAVPYEQIDPRYYRQRVVDPTGQPPGTIVVDTPSRFLYLVQGDGMAMRYGVGIGREGFA- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + E V + Sbjct: 138 WQGSGVIQWRQRWPRWKPPNEMVARQ----------------------------PELVKY 169 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVR 345 + +PG N + + + F + + Y +H P+ +SGCVR Sbjct: 170 SIENGGM-----EPGLKNPLGARALYIFSNGEDTLYRLHGNPDWRSIGK---AVSSGCVR 221 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 222 LMNQDIIDLYDRVPTKAP 239 >gi|186685970|ref|YP_001869166.1| glycoside hydrolase family protein [Nostoc punctiforme PCC 73102] gi|186468422|gb|ACC84223.1| glycoside hydrolase, family 25 [Nostoc punctiforme PCC 73102] Length = 263 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+S + V++L+++L G + + F V++A+ FQ L G+V T Sbjct: 199 LQLGDSGLRVKQLQQQLKDIGLY--TDAIDGKFSESVKNAIVSFQTSKKLQADGIVGIKT 256 Query: 162 LEAM 165 A+ Sbjct: 257 WVAL 260 >gi|255526573|ref|ZP_05393481.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296187551|ref|ZP_06855946.1| ErfK/YbiS/YcfS/YnhG [Clostridium carboxidivorans P7] gi|255509758|gb|EET86090.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296048073|gb|EFG87512.1| ErfK/YbiS/YcfS/YnhG [Clostridium carboxidivorans P7] Length = 125 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 S + + +H T P ++GC+R+ N +I+L + Sbjct: 63 NPGGPFGSRWLGLNAPYGDYGIHGTNTPSSIGKS---ISNGCIRMFNNQVIELSNLVPIG 119 Query: 360 T 360 T Sbjct: 120 T 120 Score = 40.0 bits (92), Expect = 0.73, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 20/59 (33%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + Y+ +N + +L N + V VG+ TP +I NP Sbjct: 8 YTQSYRAKYYIKINTQSHTLTLFRNNSIYKTYRVAVGKPSTPTPKGTFKIINRAINPGG 66 >gi|288556278|ref|YP_003428213.1| sporulation protein-like protein [Bacillus pseudofirmus OF4] gi|288547438|gb|ADC51321.1| sporulation protein-like protein [Bacillus pseudofirmus OF4] Length = 187 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-G 150 W L +G+ +V+ L+ L D+ + + AV FQ R Sbjct: 111 NTWG-FSNEVLKVGSRGEAVKTLQRGLK---DMSYHVAVDGVYGPQTRDAVIKFQERFPS 166 Query: 151 LDPSGMVDSSTLEAMNV 167 L G+ T E M+ Sbjct: 167 LANDGIFGPRTKEVMDK 183 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM-RHGLDPSGMV 157 L G+ +V+ ++ L + F ++AV FQ + L G+ Sbjct: 41 SGTLKEGSRGENVKIMQRALNRE--MGAELTEDGIFGPNTKTAVLAFQKTKSELKNDGIY 98 Query: 158 DSSTLEAMN 166 +T +A++ Sbjct: 99 GPATHKALS 107 >gi|296087729|emb|CBI34985.3| unnamed protein product [Vitis vinifera] Length = 262 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 8/112 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKG------LSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+ + +L++ L G L S FD VESA+K +Q + L+ +G +D Sbjct: 23 GDKVEGIHKLKKYLGQFGYLSYSHSKYHTHANDDDFDDLVESAIKTYQTNYHLNATGSLD 82 Query: 159 SSTLEAMNVPVDLRIRQLQVN--LMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 S T+ M P + + + + L P+ ++ V Sbjct: 83 SETVSQMVKPRCGAADIINGTNWMRSPRWPPSKTYLTYAFLPGTPSWAMSPV 134 >gi|224092308|ref|XP_002309552.1| predicted protein [Populus trichocarpa] gi|222855528|gb|EEE93075.1| predicted protein [Populus trichocarpa] Length = 243 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 103 HLGNSSVSVQRLRERLIISGDLD-----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G+ V +L++ L G L+ + FD +E A+K +Q+ L P+G++ Sbjct: 48 KKGDKVEGVDQLKKLLHHFGYLNHGGLNNDEVDDDYFDETIERALKTYQINFNLKPTGVL 107 Query: 158 DSSTLEAMNVP 168 D+ T+ M P Sbjct: 108 DAETVSLMMKP 118 >gi|186681402|ref|YP_001864598.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186463854|gb|ACC79655.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 283 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V+ L+ L G F E VK FQ +GL G+V ++T + Sbjct: 119 DAVKELQIILNEEGFFKKEP--DGYFSRETERGVKRFQRTYGLKDDGIVGAATWAVL 173 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 S+ L+ERL L +S FD E AV FQ + L G+V + Sbjct: 48 ESINELQERLQAQDFLS---TISGKFDLETEEAVIKFQKANNLQVDGIVGPLSWA 99 >gi|289642455|ref|ZP_06474600.1| cell wall hydrolase/autolysin [Frankia symbiont of Datisca glomerata] gi|289507714|gb|EFD28668.1| cell wall hydrolase/autolysin [Frankia symbiont of Datisca glomerata] Length = 447 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 14/137 (10%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 + + +D ++ D + + A + I+ + L Sbjct: 85 APDTPMPAAARFDAARELDAALEFDA-ALDRAVRAFQQSRGLSADGIVGPDTFRALEEAR 143 Query: 102 LHLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 LG+ V L+ERL G F E+A++ FQ Sbjct: 144 RKLGDRLLFYSVNHPFIGDDVASLQERLSNMGF--DVGRTDGIFGPRTEAALRDFQYNRA 201 Query: 151 LDPSGMVDSSTLEAMNV 167 L+P G TL + Sbjct: 202 LEPDGRCGPLTLRELKK 218 >gi|332799121|ref|YP_004460620.1| cell wall hydrolase SleB [Tepidanaerobacter sp. Re1] gi|332696856|gb|AEE91313.1| cell wall hydrolase SleB [Tepidanaerobacter sp. Re1] Length = 228 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 2/77 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +L R L G V +L++ L G A+ FQ GL G Sbjct: 27 QLGDRVLTKGCRGQDVAQLQQVLNNKGFWSGYA--DGILGNKTVDALVKFQKAKGLKADG 84 Query: 156 MVDSSTLEAMNVPVDLR 172 + T A+ V R Sbjct: 85 IAGFETFSALGVDTSYR 101 >gi|118591628|ref|ZP_01549024.1| hypothetical protein SIAM614_21832 [Stappia aggregata IAM 12614] gi|118435621|gb|EAV42266.1| hypothetical protein SIAM614_21832 [Stappia aggregata IAM 12614] Length = 220 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 68/209 (32%), Gaps = 50/209 (23%) Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVN-----LMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 G D +T A I +Q +R K ++V+ L + Sbjct: 38 DGTPDYATAYAARTDGGFAIPAIQYQKFDPKYLRQVVFYPSKYPSGTIVVDPANKFLYLI 97 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G +R + VGR + I P W P +I++D L + Sbjct: 98 QPGGRAIRYGIGVGRAGFA-WNGEAEIRFKREWPKWFPPDEMIERD--PKLEK------- 147 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHD 325 + Q+ G N + + + + +++ Y +H Sbjct: 148 ---------------------------YRDGQEGGPSNPIGARGLYLWQGNKDTLYRIHS 180 Query: 326 TPEPILFNNVVRFETSGCVRV--RNIIDL 352 T +P +SGC+R+ ++IIDL Sbjct: 181 TNQPSSIGTN---ASSGCIRMWHQDIIDL 206 >gi|27383297|ref|NP_774826.1| hypothetical protein blr8186 [Bradyrhizobium japonicum USDA 110] gi|27356471|dbj|BAC53451.1| blr8186 [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 53/204 (25%) Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G+ TL A+++ ++R + + ++++ A L VE Sbjct: 48 DGV---YTLPAVDISGVDPA------MLRQRVDYTTNEPVGTIVIDTAAHQLYLVEGDGK 98 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 +R + VG+ D + I R P+W ++++ ++ Sbjct: 99 AMRYGIGVGK-DGLAFAGTATIRRKAEWPHWTPTKNMMNREPA----------------- 140 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPI 330 + G N + + R+ + +H T EP Sbjct: 141 ------------------RYGHLASGMAGGLGNPLGPRALYLFQGERDTMFRIHGTTEPE 182 Query: 331 LFNNVVRFETSGCVRV--RNIIDL 352 R +SGC+R+ ++IIDL Sbjct: 183 TIG---RAVSSGCIRLINQDIIDL 203 >gi|168052912|ref|XP_001778883.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669752|gb|EDQ56333.1| predicted protein [Physcomitrella patens subsp. patens] Length = 648 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S V L+ L G L L+ F + A++ FQ+ HG+ +G SS+ +A+ Sbjct: 206 DSGPQVLDLQRTLYWFGYLPNRTALTAYFGPETKKALQQFQIAHGVPATGAWGSSSRQAL 265 >gi|239931029|ref|ZP_04687982.1| Peptidoglycan-binding domain 1 protein [Streptomyces ghanaensis ATCC 14672] Length = 370 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 6/78 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L R + + L+ L+ G F + AV FQ R+ L Sbjct: 215 WPLLRKRT---EDQYTRGRALQHLLMAHGY---EVKADGFFGDETQDAVMDFQRRNHLPS 268 Query: 154 SGMVDSSTLEAMNVPVDL 171 G V T A+ PV Sbjct: 269 DGKVGKDTWPALVKPVGP 286 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + + WP L +P+ G +V L+E L +G +S F A ++ FQ Sbjct: 272 VGKDTWPALV-KPVGPGADEHTVLALQELLHNTG--QGGTEVSGEFTAATAEDLRFFQRG 328 Query: 149 HGLDPSGMVDSSTLEAMNV 167 H L P+G D T A+ V Sbjct: 329 HDLPPTGRADVDTWLALLV 347 >gi|146338532|ref|YP_001203580.1| hypothetical protein BRADO1451 [Bradyrhizobium sp. ORS278] gi|146191338|emb|CAL75343.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 177 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 47/174 (27%), Gaps = 45/174 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + ++VN L V G LR + VGR D RI Sbjct: 35 RQTVMFDSNYAPGTIVVNTSERRLYLVLQGGQALRYGIGVGR-DGFRWSGVHRITAKKEW 93 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 94 PAWTPPAQMLRRR---------------------------------------PDLPRHMA 114 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G N + + + +H + EP +SGC R+ N D+ Sbjct: 115 GGIENPLGARAMYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTN-DDVADL 163 >gi|269103521|ref|ZP_06156218.1| general secretion pathway protein A [Photobacterium damselae subsp. damselae CIP 102761] gi|268163419|gb|EEZ41915.1| general secretion pathway protein A [Photobacterium damselae subsp. damselae CIP 102761] Length = 547 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 2/62 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G V L ++L L + FD + ++ FQ L+ G+ Sbjct: 469 SIRYGQQGPRVAWLNQQLNT--FLGEPQTNQNYFDQGLVDKLRRFQRSQSLNADGIAGKQ 526 Query: 161 TL 162 TL Sbjct: 527 TL 528 >gi|217977237|ref|YP_002361384.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217502613|gb|ACK50022.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 195 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 46/196 (23%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 P +L R R + K ++++ L + G +R + VGR Sbjct: 40 PAELTARPRPTAPPRELVPYDGKYTAGTIVISTQERRLYYILPGNQAVRYGIGVGRPG-F 98 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T + P W P ++++ Sbjct: 99 TWKGDKTVAMKREWPSWRPPAQMLRRR--------------------------------- 125 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 P+ + G N + + + +H + EP +SGC+R+ Sbjct: 126 ------PDLPRFMEGGPDNPLGARAMYLGGS-LYRIHGSNEPQTIGQ---AVSSGCIRMT 175 Query: 348 N--IIDLDVWLLKDTP 361 N ++DL + T Sbjct: 176 NEDVVDLYDRVRVGTK 191 >gi|171913252|ref|ZP_02928722.1| hypothetical protein VspiD_18770 [Verrucomicrobium spinosum DSM 4136] Length = 216 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 54/204 (26%), Gaps = 43/204 (21%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + P R +Q + + G V++++ + G++ S Sbjct: 43 GQTQYMEGYDPGLPRGQQFRQTDSSSWWRGDGVPGPAKVVISLGQQRAFFYKGGELVGES 102 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + G TP I++ + Q Y+ + +++ Sbjct: 103 AISSGDEQHPTPTGRYSISQKNAD---------------HKSSQYGDYVDSSGNVVVENI 147 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGK--INAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 + Q PG A+ + F MH P Sbjct: 148 DRHSDP----------------QPPGTRYDGAIMPYFMRFTG--GIGMHAGYLPGY---- 185 Query: 336 VRFETSGCVRVRNIIDLDVWLLKD 359 + GCVR+ D+ ++ Sbjct: 186 --PASHGCVRM--PRDMAQAFFRN 205 >gi|163744654|ref|ZP_02152014.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanibulbus indolifex HEL-45] gi|161381472|gb|EDQ05881.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanibulbus indolifex HEL-45] Length = 187 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 300 QDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 Q G N + + + F + +TY +H T +P R ++GC+R+ +++DL Sbjct: 120 QPGGPGNPLGARALYLFQNGRDTYFRIHGTTQPNSIG---RSVSNGCIRMLNEHVVDLYQ 176 Query: 355 WLLKDT 360 + T Sbjct: 177 RVPIGT 182 >gi|317125458|ref|YP_004099570.1| ErfK/YbiS/YcfS/YnhG family protein [Intrasporangium calvum DSM 43043] gi|315589546|gb|ADU48843.1| ErfK/YbiS/YcfS/YnhG family protein [Intrasporangium calvum DSM 43043] Length = 202 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 12/142 (8%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE---AMNVPVD 170 ++ RL G + +A+ FQ + G +G+ D T + +M P Sbjct: 1 MQARLKQIGWFSGEVTS--FYGTRTTTAISGFQRKRGFPVTGVADQRTYDRLLSMTRPPT 58 Query: 171 L------RIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + + K + + + R + ++ SL V +G V G Sbjct: 59 QDELNNVTPQPPATSPGTAKWDADPRCLTGRVICISKTTRSLTWVIDGTAQYSMDVRFGS 118 Query: 224 VDRQTPILHSRINRIMFNPYWV 245 T I + Sbjct: 119 EAEPTREGVFSITWKKVDVISN 140 >gi|163802698|ref|ZP_02196589.1| putative general secretion pathway protein A [Vibrio sp. AND4] gi|159173586|gb|EDP58406.1| putative general secretion pathway protein A [Vibrio sp. AND4] Length = 541 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L ++ L + L + ++ S +D+ ++ V+LFQ G+ Sbjct: 453 WQAPLRDTLRSDMEGPAIDVLDQLLAQA--VNEQPLGSEVYDSELKERVELFQRWQGIGV 510 Query: 154 SGMVDSSTLEAMNVPVDLRIRQL-QVNLMR 182 G+ TLE + V + L ++N Sbjct: 511 DGIAGKQTLERLQQSVQIDAPPLKEINEED 540 >gi|218512244|ref|ZP_03509084.1| hypothetical protein Retl8_00424 [Rhizobium etli 8C-3] Length = 183 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 45/190 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E ++V+ PA V +R V VGR Sbjct: 21 QVPIDKIKPELRRQEVAYETTHAAGTIVVDTPARRAYYVLGDGRAMRYGVGVGREG-LAF 79 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + I R P W ++ +++ Sbjct: 80 AGDAYIGRKAEWPSWTPTENMQRRE----------------------------------- 104 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + Y +H T +P +SGC+R+ Sbjct: 105 -ERYRKLAGGMPGGPNNPLGARAMYLYRGGGDTHFRIHGTNQPQSIG---LAMSSGCIRM 160 Query: 347 --RNIIDLDV 354 ++IDL Sbjct: 161 MNHDVIDLYD 170 >gi|92118412|ref|YP_578141.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gi|91801306|gb|ABE63681.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 354 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 48/190 (25%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 +QL L R + K ++V+ L + +R V VGR D T Sbjct: 147 KQLAPRLRRQEVTFATKEPPGTLVVDTSNTYLYYILGNNRAIRYGVRVGR-DGFTWAGVQ 205 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 +I+R P W P +I++ Sbjct: 206 KISRKAEWPDWHPPTEMIERQ--------------------------------------- 226 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNII 350 P G N + + + S Y +H T +P F +SGC+ + ++ Sbjct: 227 PYLPRFMAGGPGNPLGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCIGMLNEDVS 281 Query: 351 DLDVWLLKDT 360 DL + T Sbjct: 282 DLFDRVKVGT 291 >gi|330466015|ref|YP_004403758.1| peptidase M15A [Verrucosispora maris AB-18-032] gi|328808986|gb|AEB43158.1| peptidase M15A [Verrucosispora maris AB-18-032] Length = 262 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G S V+ L+ R+ L + +AV+ FQ +GL G+ Sbjct: 40 DRTLSQGRSGSDVRELQLRVAGWAGNRDIVELDGRYGPKTAAAVRRFQSAYGLTADGIAG 99 Query: 159 SSTLEAM 165 T + Sbjct: 100 PQTFAKL 106 >gi|295703844|ref|YP_003596919.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium DSM 319] gi|294801503|gb|ADF38569.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium DSM 319] Length = 111 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 6/58 (10%) Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 + +H T +P + + GCVR+ N I++L + TP + Sbjct: 55 FGPLWMGLSKP-TYGIHGTNDPASIGRDM---SHGCVRMDNEDILELSSVVPIGTPVY 108 >gi|226944381|ref|YP_002799454.1| general secretion pathway protein A [Azotobacter vinelandii DJ] gi|226719308|gb|ACO78479.1| General secretion pathway protein A [Azotobacter vinelandii DJ] Length = 570 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 A T + Y + P + R L G+ V + +L + F Sbjct: 471 ALTLRWSGRYVRLQQA---PLIHGRHLSHGSRGADVAWVDLQLERWEGRSRPRAGDPLFG 527 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +E V+ FQ +GL G+V + TLE + Sbjct: 528 DDLERRVRRFQQANGLRADGVVGAQTLERLAR 559 >gi|206577142|ref|YP_002237024.1| peptidoglycan binding domain/papain family cysteine protease [Klebsiella pneumoniae 342] gi|206566200|gb|ACI07976.1| peptidoglycan binding domain/papain family cysteine protease [Klebsiella pneumoniae 342] Length = 962 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSK------GLSVAFDAYVESAVKLFQMRHGLDP 153 + L G+S V LR+RL + L S FDA + SAV+ +Q G+ Sbjct: 3 KLLLQGSSGPEVVELRKRLAKT--LGADAKMFALPSNSDTFDATLASAVRHWQSNIGIIA 60 Query: 154 SGMVDSS 160 G+V Sbjct: 61 DGVVGPY 67 >gi|7159629|emb|CAB76364.1| matrix metalloproteinase [Cucumis sativus] Length = 320 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Query: 103 HLGNSSVSVQRLRERLIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 HLG++ + ++++ L G + + FD +ESA+K +Q H L PSG+ Sbjct: 55 HLGDTKQGIHQIKKYLQRFGYITTNIQKHSNPIFDDTFDHILESALKTYQTNHNLAPSGI 114 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +DS+T+ + +P ++ + + G + Sbjct: 115 LDSNTIAQIAMPRCGVQDVIKNKKTKKRNQNFTNNGHTHF 154 >gi|304407661|ref|ZP_07389312.1| carboxyl-terminal protease [Paenibacillus curdlanolyticus YK9] gi|304343144|gb|EFM08987.1| carboxyl-terminal protease [Paenibacillus curdlanolyticus YK9] Length = 487 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L V+ L++ L G F A + AV+ FQ L +G+V+ Sbjct: 390 SSELRKDQLGDDVRSLQQMLKALGY--KVDRSDGYFSAVTDQAVRQFQQASDLPVNGVVN 447 Query: 159 SSTLEAMNVPVDLRIR 174 ++T +A+ V IR Sbjct: 448 NATADAIEKEVVAWIR 463 >gi|205373812|ref|ZP_03226614.1| spore cortex-lytic enzyme [Bacillus coahuilensis m4-4] Length = 319 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G V L+ RL G + + F AV+ FQ G++ G V T Sbjct: 41 GAVGEDVVELQARLQYIGFY--NGKIDGVFGWGTYWAVRNFQYEFGMEVDGFVGEET 95 >gi|326502188|dbj|BAJ98922.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 365 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + RL++ L G L P + FDA +E+A++ +Q GL+ +G +D++T+ Sbjct: 58 GDERQGLARLKDYLSRFGYLPAPPAKFNDMFDADMETAIRTYQHNFGLEATGQLDAATVA 117 Query: 164 AMNVP 168 M P Sbjct: 118 KMMSP 122 >gi|326488589|dbj|BAJ93963.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326534164|dbj|BAJ89432.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 365 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + RL++ L G L P + FDA +E+A++ +Q GL+ +G +D++T+ Sbjct: 58 GDERQGLARLKDYLSRFGYLPAPPAKFNDMFDADMETAIRTYQHNFGLEATGQLDAATVA 117 Query: 164 AMNVP 168 M P Sbjct: 118 KMMSP 122 >gi|150018076|ref|YP_001310330.1| peptidoglycan binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904541|gb|ABR35374.1| Peptidoglycan-binding domain 1 protein [Clostridium beijerinckii NCIMB 8052] Length = 501 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R L LG+S +V+ ++ R+ + L P + +AVK FQ L + Sbjct: 385 PGRELTLGSSGPAVRAIQGQLNRIARNYPLIPKIAEDGKYGPKTAAAVKTFQQIFTLPQT 444 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 445 GVVDYATWYRIS 456 >gi|118593899|ref|ZP_01551257.1| lipoprotein, putative [Stappia aggregata IAM 12614] gi|118433520|gb|EAV40189.1| lipoprotein, putative [Stappia aggregata IAM 12614] Length = 176 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 65/205 (31%), Gaps = 47/205 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRY--VLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 + ++N + ++L+ ++V+ P L G +R V +GR Sbjct: 11 PIPAVDLSKINPVYYRQLVNYAAPEPAGTIIVDTPNRFLYLTMEGGQAMRYGVGIGREGF 70 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +RI R P W P +I + Sbjct: 71 A-WGGRARIARKAVWPKWTPPAEMIDR--------------------------------- 96 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGC 343 PE + PG N + + + + + Y +H T E +SGC Sbjct: 97 ---QPELEKYRNGMPPGLDNPLGARALYIFEGTRDTLYRLHGTSETWSIGK---AVSSGC 150 Query: 344 VRV--RNIIDLDVWLLKDTPTWSRY 366 VR+ ++IIDL + TP R Sbjct: 151 VRLLQQDIIDLYNRVPNGTPVVVRQ 175 >gi|148257495|ref|YP_001242080.1| hypothetical protein BBta_6254 [Bradyrhizobium sp. BTAi1] gi|146409668|gb|ABQ38174.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 405 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 55/185 (29%), Gaps = 48/185 (25%) Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 NL R + K ++V+ P L V +R V VGR T +I + Sbjct: 213 NLRRQEVDFVTKEPPGTIVVDTPNTYLYLVLGNGRAMRYGVRVGREG-FTWTGVQKITKK 271 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 P W P +I++ P Sbjct: 272 TEWPDWYPPSEMIERQ---------------------------------------PYLPR 292 Query: 299 RQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVW 355 G N + + + S Y +H T +P F +SGC+ + N + DL Sbjct: 293 FMAGGPGNPLGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCIGMLNDDVSDLFDR 347 Query: 356 LLKDT 360 + T Sbjct: 348 VKVGT 352 >gi|75909734|ref|YP_324030.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75703459|gb|ABA23135.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 389 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 3/79 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDS 159 L G+ VQ L+ +L G + + AV FQ G+ D Sbjct: 51 ALKPGSQGPDVQTLQMQLKQLGYYS--GITDGKYGDSTKQAVAKFQQAKVFSRVDGVADL 108 Query: 160 STLEAMNVPVDLRIRQLQV 178 +T + + +L V Sbjct: 109 ATKRVLQTALIDNQNKLAV 127 >gi|87124371|ref|ZP_01080220.1| hypothetical protein RS9917_12195 [Synechococcus sp. RS9917] gi|86167943|gb|EAQ69201.1| hypothetical protein RS9917_12195 [Synechococcus sp. RS9917] Length = 157 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 52/182 (28%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R+ + + R V V++ L +++G+ R V +G + TP Sbjct: 7 KRLAVVAGAGVLATVAASPVRAERTVEVSLKERYLTILDDGEPVARFPVAIGAPESPTPP 66 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 SI +K+ + + GK + Sbjct: 67 GDY---------------SITRKEAKP---------------VYHKHGKVI--------- 87 Query: 291 PEPPNFIFRQDPGKINAMASTKI-EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + F + Y +H T P + + GC+R+ N Sbjct: 88 ----------APGPKNPVGVRYMAYFTLGSGEYAIHGTAWPNWV-KLRAAVSLGCIRMLN 136 Query: 349 II 350 Sbjct: 137 SD 138 >gi|300023032|ref|YP_003755643.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524853|gb|ADJ23322.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 330 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 11/95 (11%) Query: 287 DWN-----SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 DW P R G N + + I + +H T EP R E+S Sbjct: 198 DWYPPADMRKRKPELPTRMLGGIRNPLGAKAIYLGNT-LYRIHGTNEPKSIG---RAESS 253 Query: 342 GCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 GC R+ N++ L + T ++ + + Sbjct: 254 GCFRMLNENVLHLASLVRVGTEVTVVRSLDGKIAS 288 >gi|118587650|ref|ZP_01545060.1| hypothetical protein SIAM614_08753 [Stappia aggregata IAM 12614] gi|118439272|gb|EAV45903.1| hypothetical protein SIAM614_08753 [Stappia aggregata IAM 12614] Length = 245 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 51/162 (31%), Gaps = 44/162 (27%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L LR + VG+ ++I +P W PR +I + L + Sbjct: 111 LYWTLGNGKALRYGIGVGKAGFA-WSGEAKIRVKRPHPIWRPPREMIARK--PSLER--- 164 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN---T 321 Y + PG N + + ++ + + Sbjct: 165 YWEKGY------------------------------PPGLKNPLGARAMDLWQGSTDTLY 194 Query: 322 YMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 +H T +P +SGC+R+ +++IDL + T Sbjct: 195 RIHGTNQPNSIGKS---VSSGCIRMWQQDVIDLFSRVPLQTK 233 >gi|85703784|ref|ZP_01034888.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. 217] gi|85672712|gb|EAQ27569.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. 217] Length = 188 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 298 FRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 + Q G N + S + F + +TY +H T +P ++GC+R+ ++ DL Sbjct: 119 YVQPGGSDNPLGSRALYLFQNGRDTYYRIHGTTQPSSIGQS---VSNGCIRMINEHVQDL 175 Query: 353 DVWLLKDTP 361 + T Sbjct: 176 YARVPIGTV 184 >gi|312794502|ref|YP_004027425.1| carboxyl-terminal protease [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181642|gb|ADQ41812.1| carboxyl-terminal protease [Caldicellulosiruptor kristjanssonii 177R1B] Length = 472 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + V ++RL G L D +AVK FQ + L SG++ Sbjct: 380 ATKKFKKGDMDLEVLAAQQRLFYLGYLSSWTA---KMDDSTVAAVKKFQKDNKLYTSGVL 436 Query: 158 DSSTLEAMN 166 D +T + +N Sbjct: 437 DITTQKKLN 445 >gi|256752829|ref|ZP_05493670.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748279|gb|EEU61342.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] Length = 110 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++ L +G + F ++AV Q + L P G+ T Sbjct: 29 LKYGMRSPEVRHLQQNLNKAGYFVTANPTD-YFGPATKNAVMRLQKDYNLVPDGIYGPLT 87 Query: 162 LEAM 165 +A+ Sbjct: 88 EKAL 91 >gi|84501683|ref|ZP_00999855.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanicola batsensis HTCC2597] gi|84390304|gb|EAQ02863.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanicola batsensis HTCC2597] Length = 190 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 56/216 (25%), Gaps = 51/216 (23%) Query: 157 VDSSTLEA--MNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVE-NGK 212 L A + + +R+ + +G ++ + + +L +G Sbjct: 21 ATPHLLRAQDIAEAPEEGVRRNVSSFASQDWQDHFDTLGAAAIVCDTTSRALHFWSGDGS 80 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V R D T ++RI R P W S ++ Sbjct: 81 DYRIYPTSVPRTDELTKRGYTRIVRKKVGPDWTPTPSQKER------------------- 121 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 W PG N + + + +H T + Sbjct: 122 -------------FGWEYM---------PPGPDNPLGTHAMYLDWP-AYLIHGTHDTRKI 158 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 R + GC+ + N L TP ++ + Sbjct: 159 G---RQSSDGCIGLFNPA--IEELFAITPIGTQVRV 189 >gi|307824556|ref|ZP_07654781.1| Peptidoglycan-binding domain 1 protein [Methylobacter tundripaludum SV96] gi|307734540|gb|EFO05392.1| Peptidoglycan-binding domain 1 protein [Methylobacter tundripaludum SV96] Length = 553 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + +S SV LR L + +D + + V FQ +H L Sbjct: 467 PTPDGKVIRPRETSESVLWLRHLLNSIDRKTEAVEQPRFYDDRLVARVMDFQHQHQLPED 526 Query: 155 GMVDSSTL 162 G V T+ Sbjct: 527 GKVGEKTM 534 >gi|302532772|ref|ZP_07285114.1| predicted protein [Streptomyces sp. C] gi|302441667|gb|EFL13483.1| predicted protein [Streptomyces sp. C] Length = 137 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+S V L+ L I LD + G+ + E+AVK Q R L G+ T Sbjct: 60 PGSSGPQVAELQRALTICQGLD-TGGVDGVYGRKTEAAVKTVQARRSLKVDGIYGPDT 116 >gi|254501658|ref|ZP_05113809.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] gi|222437729|gb|EEE44408.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] Length = 219 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I ++ R ++V L +R V +GR D Sbjct: 56 PAVDISKIDPKFYRQVVDYNSSAQPGSIVVETHERFLYLAMGDGKAMRYGVGIGR-DGFA 114 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +RI R P W P +I++ L + N + Sbjct: 115 WGGRARIARKKAWPTWTPPTDMIKRQ--PKLAK-----YKNGM----------------- 150 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 DPG N + + + +++ Y +H T E +SGCVR Sbjct: 151 ------------DPGLDNPLGARALYIFEGNKDTLYRIHGTSETWSIGK---AASSGCVR 195 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + + TP Sbjct: 196 MLQQDVIDLYNRVPEGTP 213 >gi|229173406|ref|ZP_04300950.1| Spore cortex-lytic enzyme [Bacillus cereus MM3] gi|228610100|gb|EEK67378.1| Spore cortex-lytic enzyme [Bacillus cereus MM3] Length = 259 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 10/152 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQGKFGLPVDG 89 Query: 156 MVDSSTL----EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + + T +A + N ++ + N+P Sbjct: 90 LAGAKTKQMLAKATKYDKSTANKGTTTNKGNSGGTAKENKPSQNKGTNVPNG----YSQN 145 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + + G + + + ++ N Sbjct: 146 DIQLMANAVYGESRGEPYLGQVAVAAVILNRV 177 >gi|4455296|emb|CAB36831.1| hypothetical protein [Arabidopsis thaliana] gi|7268071|emb|CAB78409.1| hypothetical protein [Arabidopsis thaliana] Length = 432 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 13/187 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ VQ L+E L+ G + + +F + SAVK +Q G+ G++ + Sbjct: 178 LKVGSEGDDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGVMTAE 237 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 L+ + + D+ +++++ + E E L + V Sbjct: 238 LLQRLFMDEDV------ETDKDEASTMKKEVKTETTNYSSENLEHEYSEISLNLLNTPVK 291 Query: 221 VGRVDR---QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 G + P++ N +F +P K + + D + N + + Sbjct: 292 TGSLYWIFLLIPLIKEAGNGAVFTSVTQVPEK---KQSIVKDQSDREVDVTQNRVFLLGE 348 Query: 278 GKEVFVE 284 + Sbjct: 349 NRWEDPS 355 >gi|15965344|ref|NP_385697.1| hypothetical protein SMc01200 [Sinorhizobium meliloti 1021] gi|307312718|ref|ZP_07592349.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|15074524|emb|CAC46170.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021] gi|306899443|gb|EFN30075.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 193 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 54/191 (28%), Gaps = 44/191 (23%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ R + ++VN L V+ G +R + VG R Sbjct: 31 SPQSARTRIDPRYRRQEVAYYGGESPGTIVVNTEERYLYYVQGGGSAVRYGIGVGEEGR- 89 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T ++I R P W ++I++ L Q Sbjct: 90 TLKGRAKIGRKAEWPSWTPTANMIRRK--PHLAQ-------------------------- 121 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCV 344 + G N + + + + +H T EP +SGC+ Sbjct: 122 --------YAGGVSGGLHNPLGAAALYLYQGGNDTMFRLHGTNEPWTIGQ---AVSSGCI 170 Query: 345 RVRNIIDLDVW 355 R+ N D+ Sbjct: 171 RLTN-DDIVDL 180 >gi|312621812|ref|YP_004023425.1| erfk/ybis/ycfs/ynhg family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202279|gb|ADQ45606.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 223 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V V ++ RL G S + + + +E AV ++Q ++ L + + Sbjct: 154 RTIYPGDTGVDVMAVQRRLKELGFYSGS--IDGKYGSALEYAVNIYQKKNKLPVTNKITP 211 Query: 160 STLEAMN 166 L M Sbjct: 212 YLLRKMG 218 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 13/116 (11%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK V ++ G+ + +H T Sbjct: 60 SPGKTSTPTPVGTFKIISKDYW-----GEG--FGGRWMGLNVPYGKYGIHGTIYESYIGA 112 Query: 335 VVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 + GC+R+ +++ +L +++ T I + T T V V Sbjct: 113 ---HVSKGCIRMLNKDVKELFLYIPIGTTVVISEGIYGEFRNGFRTIYPGDTGVDV 165 >gi|307941423|ref|ZP_07656778.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] gi|307775031|gb|EFO34237.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] Length = 221 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 66/212 (31%), Gaps = 50/212 (23%) Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVN-----LMRIKKLLEQKMGLRYVLVNIPAASLEA 207 G D +T A + +Q +R + ++V+ L Sbjct: 38 DDGTPDYATAYAPMRDGGFSLPAIQYQKFDPKFLRQSVFYPTWYEVGTIVVDPKRKFLYL 97 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 VE G +R + VGR + I P W P+ +I+++ L + Sbjct: 98 VEPGGRAIRYGIGVGRAGFA-WNGEAVIKYKRKWPKWFPPKEMIERE--PRLAK------ 148 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MH 324 W Q G N + + + +++ Y +H Sbjct: 149 --------------------WKDG--------QPGGPSNPIGVRGLYLWQGNKDTLYRIH 180 Query: 325 DTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 T P +SGC+R+ ++IIDL Sbjct: 181 STNAPNSIGTN---ASSGCIRMWHQDIIDLYE 209 >gi|295696768|ref|YP_003590006.1| carboxyl-terminal protease [Bacillus tusciae DSM 2912] gi|295412370|gb|ADG06862.1| carboxyl-terminal protease [Bacillus tusciae DSM 2912] Length = 473 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 94 WPELP---IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 W P RP+ ++ SV+ ++ L G F + A++ FQ G Sbjct: 373 WQLPPLSITRPITPDSTDTSVKIMQNFLEALGYFP--GRTDGYFSSQTAEALRAFQHAKG 430 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQ 175 L P+G++D T A+N V + +Q Sbjct: 431 LSPTGILDQDTAAALNDAVLAKEKQ 455 >gi|238917193|ref|YP_002930710.1| hypothetical protein EUBELI_01266 [Eubacterium eligens ATCC 27750] gi|238872553|gb|ACR72263.1| Hypothetical protein EUBELI_01266 [Eubacterium eligens ATCC 27750] Length = 419 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++L+E+L + G+ S + +AVK FQ L S Sbjct: 336 PGTNLDIGSSGQKVRQLQEQLNLIGEYYNSIPVLSTDGIYGEQTAAAVKEFQRIFNLPQS 395 Query: 155 GMVDSSTL 162 G+ D T Sbjct: 396 GITDFPTW 403 >gi|167766804|ref|ZP_02438857.1| hypothetical protein CLOSS21_01312 [Clostridium sp. SS2/1] gi|317498794|ref|ZP_07957082.1| peptidoglycan binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711558|gb|EDS22137.1| hypothetical protein CLOSS21_01312 [Clostridium sp. SS2/1] gi|316893929|gb|EFV16123.1| peptidoglycan binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 419 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERL-IISG 122 PI I + I G P L +G+S V++++++L I+ Sbjct: 303 QGYAPIEILRYYYGESMYINTAEQI--SGIPSSWPGYDLTIGSSGDKVRQIQQQLNRIAK 360 Query: 123 DLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 D P+ + + +AV+ FQ GL +G+VD T Sbjct: 361 DYPSLPTIAVDGVYGESTANAVRKFQNVFGLPQTGIVDYPTW 402 >gi|319645240|ref|ZP_07999473.1| SleB protein [Bacillus sp. BT1B_CT2] gi|317393049|gb|EFV73843.1| SleB protein [Bacillus sp. BT1B_CT2] Length = 305 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 15 AFSEQVIQRGATGDDVIELQARLQYNGYY--NGRIDGVYGWATYWAVRNFQNQFGLRDTD 72 Query: 155 GMVDSSTLE 163 G+V T Sbjct: 73 GLVGPKTKR 81 >gi|213026798|ref|ZP_03341245.1| hypothetical protein Salmonelentericaenterica_31870 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 161 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + E G N M I T H T F +R + GC+R+RN Sbjct: 10 YAKEGKTLPAMVPAGPDNPMGLYAIYIGRLYAT--HGTNA--NFGIGLR-VSQGCIRLRN 64 Query: 349 IIDLDVWLLKDTPTWSRYHI 368 D +L P +R I Sbjct: 65 --DDIKYLFDHVPVGTRVQI 82 >gi|222530301|ref|YP_002574183.1| carboxyl-terminal protease [Caldicellulosiruptor bescii DSM 6725] gi|222457148|gb|ACM61410.1| carboxyl-terminal protease [Caldicellulosiruptor bescii DSM 6725] Length = 472 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + V ++RL G L D +AVK FQ + L PSG++ Sbjct: 380 ATKKFKKGDMDLEVLAAQQRLFYLGYLSNWTA---KMDDSTVAAVKKFQKDNKLYPSGVL 436 Query: 158 DSSTLEAMN 166 D +T + +N Sbjct: 437 DITTQKKLN 445 >gi|119512604|ref|ZP_01631680.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] gi|119462737|gb|EAW43698.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] Length = 394 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 +A + + P + L G+ V+RL+ +L G + + + ++A Sbjct: 31 LASLEIAQASSTTPTIESI-LIPGSRGADVKRLQTKLKDLGYYNSE--IDGLYGPDTQNA 87 Query: 142 VKLFQMRHGL-DPSGMVDSSTLEAMNV 167 V FQ L G+ D +T ++ Sbjct: 88 VVQFQKFRNLGRTDGVADLTTRNSLQT 114 >gi|311068810|ref|YP_003973733.1| spore cortex-lytic enzyme [Bacillus atrophaeus 1942] gi|310869327|gb|ADP32802.1| spore cortex-lytic enzyme [Bacillus atrophaeus 1942] Length = 309 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 29 AFSNQVIQRGATGDDVIELQARLQYNGYY--NGKIDGVYGWGTYWAVRNFQNQFGLKEID 86 Query: 155 GMVDSST 161 G+V + T Sbjct: 87 GLVGAQT 93 >gi|114766731|ref|ZP_01445669.1| hypothetical protein 1100011001326_R2601_12126 [Pelagibaca bermudensis HTCC2601] gi|114541050|gb|EAU44106.1| hypothetical protein R2601_12126 [Roseovarius sp. HTCC2601] Length = 250 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 20/114 (17%) Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP------------GKINAMASTK 312 YL G+ + DW P + R+DP G N + + Sbjct: 103 YLIAVGAQGYGFSGEATIPFQRDWPYWTPTANMLRRDPEEYGPVRNGLPGGLENPLGARA 162 Query: 313 IEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + R+ Y +H TP P + +SGC+R+ +++I L + T Sbjct: 163 LYLYKNGRDTLYRIHGTPSPWTVGHGT---SSGCIRMFNQDVIHLAEQVENGTK 213 >gi|56695353|ref|YP_165701.1| ErfK/YbiS/YcfS/YnhG family protein [Ruegeria pomeroyi DSS-3] gi|56677090|gb|AAV93756.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Ruegeria pomeroyi DSS-3] Length = 185 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 52/199 (26%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ +++ + L+ + + L V + +R VG+ + Sbjct: 30 DPTPQVVRIKKQFEPGRLLILPR-----------SFYLYYVTEEREAIRYGCGVGKAGLE 78 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 + I+ P W +I++D + DNN Sbjct: 79 -FTGTATIDVKKEWPTWRPTPEMIERDP-----RTYAKFVDNNY---------------- 116 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCV 344 Q G N + + + F + +TY +H T +P + ++GC+ Sbjct: 117 -----------IQPGGPENPLGARALYLFQNGVDTYFRIHGTTQPQTIGH---AASNGCI 162 Query: 345 RV--RNIIDLDVWLLKDTP 361 R+ ++IDL + T Sbjct: 163 RMLNEHVIDLYNRVPLGTV 181 >gi|160915943|ref|ZP_02078151.1| hypothetical protein EUBDOL_01967 [Eubacterium dolichum DSM 3991] gi|158432419|gb|EDP10708.1| hypothetical protein EUBDOL_01967 [Eubacterium dolichum DSM 3991] Length = 641 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL--IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHG 150 P P PL LG+ V L+ L I ++ F+ +SAV+ FQ + Sbjct: 298 PSYPGTPLQLGSVGKDVAMLQAFLNAIAINYPAIRPIFPVNGEFETATQSAVRTFQRQFN 357 Query: 151 LDPSGMVDSSTLEAMN 166 L G+V +T ++ Sbjct: 358 LTVDGIVGRTTWYRIS 373 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 14/110 (12%) Query: 98 PIRPLHLGNSSVSVQRLRERLIIS--GDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL LG S +V+ ++ + D PS + F A +A++ FQ L Sbjct: 491 PGIPLQLGTSGDAVEAVQNAINKLAKQYTDIPSVNVDGIFGAATRNAIRNFQSLFDLTAD 550 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 G+V T E + QLQ N L ++ L I Sbjct: 551 GIVGVKTWELLF----SIAAQLQANTADTAIL-------QHQLNMIAKYY 589 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQM 147 G W + R L G+ SV Q ++ L I + P + F A +A+ FQ Sbjct: 396 SGVWQQ---RVLRQGDRSVETQLMQYYLSSIRLFYPEIPEVSIDGRFGAGTYNAILAFQK 452 Query: 148 RHGLDPSGMVDSSTLEAM 165 R GL G+V +T + + Sbjct: 453 RFGLTADGLVGQATWDRI 470 >gi|157693492|ref|YP_001487954.1| M15C subfamily peptidase [Bacillus pumilus SAFR-032] gi|157682250|gb|ABV63394.1| M15C subfamily peptidase [Bacillus pumilus SAFR-032] Length = 274 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 7/78 (8%) Query: 97 LPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRH 149 LP L V +++ L + G+ + +AVK FQ+ + Sbjct: 193 LPSGILKITKPLTKGSQVTAVQKALSSLYFYPDKGAKNNGIDGYYGPKTANAVKRFQLMN 252 Query: 150 GLDPSGMVDSSTLEAMNV 167 GL G+ T M Sbjct: 253 GLAADGIYGPKTRNKMEQ 270 >gi|91977919|ref|YP_570578.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91684375|gb|ABE40677.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 410 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 61/198 (30%), Gaps = 48/198 (24%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 P + QL NL R + + K ++V+ L V +R V VGR D Sbjct: 203 EQPEADQSFQLPPNLRRQEVAFQTKEPAGTIVVDTSHTYLYYVLGNGRAMRYGVRVGR-D 261 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 T +++R P W P +I++ Sbjct: 262 GFTWNGVQKVSRKAEWPDWHPPAEMIERQ------------------------------- 290 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 P G N M + + S Y +H T +P F +SGC+ Sbjct: 291 --------PYLPRFMAGGPGNPMGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCI 337 Query: 345 RV--RNIIDLDVWLLKDT 360 + ++ DL + T Sbjct: 338 GMLNDDVSDLFERVKVGT 355 >gi|308126559|ref|ZP_07663817.1| type II secretory pathway, component ExeA [Vibrio parahaemolyticus AQ4037] gi|308109785|gb|EFO47325.1| type II secretory pathway, component ExeA [Vibrio parahaemolyticus AQ4037] Length = 274 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L + L + + S + FD ++ V+LFQ G+ Sbjct: 186 WQAPLKETLRLDMEGPAIEVLDQLLAKA--VSESPLETSIFDGALKERVELFQRWQGIGV 243 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TLE + V L Sbjct: 244 DGIAGHRTLERLQQSVQPNAPTLA 267 >gi|139439483|ref|ZP_01772915.1| Hypothetical protein COLAER_01941 [Collinsella aerofaciens ATCC 25986] gi|133775036|gb|EBA38856.1| Hypothetical protein COLAER_01941 [Collinsella aerofaciens ATCC 25986] Length = 301 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 18/150 (12%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA--QTEKAIAFYQD 87 PI + + + ++ + A V D +++ ++ + + +A Sbjct: 3 PITTGMQGAAVEDVQSRLLQLGYTIDAAEVT---DKYFGATTEQAVSTFRLDSGLAAGHA 59 Query: 88 ILSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + W L LG+ VQ L+ L + G F + Sbjct: 60 -VDIPCWSALVDASYKLGDRTLYLRMPNFHGADVQALQRALNVLGF--ACGEDDGYFGPH 116 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 E+A++ FQ GL GM T +N Sbjct: 117 TEAALQQFQENVGLFADGMAFQDTYAYINR 146 >gi|225848549|ref|YP_002728712.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643366|gb|ACN98416.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 249 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 51/170 (30%), Gaps = 45/170 (26%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +KK L + L V ++ L +E K + V +G D TP +I Sbjct: 102 LKKQLPEDFKLNTVYISTQDHRLYYPIELEGKKYVITFPVGLGGEDFPTPKGEFKITERR 161 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP WV+P S PN Sbjct: 162 VNPDWVVPPS---------------------------------------AKINNPNLPPV 182 Query: 300 QDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + + ++ +H T + + + GC+ +RN Sbjct: 183 VPYGSPENGLGTRALRL-NGSSYMIHGTSKRSEKGVGM-NISYGCIVLRN 230 >gi|169335908|ref|ZP_02863101.1| hypothetical protein ANASTE_02343 [Anaerofustis stercorihominis DSM 17244] gi|169258646|gb|EDS72612.1| hypothetical protein ANASTE_02343 [Anaerofustis stercorihominis DSM 17244] Length = 279 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ ++ +E LI +G L + + FD+ +AVK +Q + GL +G +D+ Sbjct: 213 TYKQGHKGDVIKDYQEILIRTGYLKGTA--NGTFDSKTTAAVKSYQTKKGLSVTGNLDTK 270 Query: 161 TLEAMN 166 T+EA++ Sbjct: 271 TMEALD 276 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G S + + L L + FD+ AVK +Q G+ + +D Sbjct: 75 SKTFSEGESGDEILSYKLILYYLDYLS--DTPNNTFDSTTTKAVKEYQTSRGIKETSKLD 132 Query: 159 SSTLE 163 +T++ Sbjct: 133 KTTMQ 137 Score = 43.9 bits (102), Expect = 0.050, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 34/187 (18%) Query: 12 YCFFVYLILPMGLSLVEKPIH---ASVLDEIIN-------ESYHSIVNDRFDNFLARVDM 61 +C YL ++L K ++ A L + + + V+ + + + Sbjct: 24 FCSEKYLNESYSVNLSSKTLYYAFAGNLSDYLEGKIADDDDLNLDSVDKDYSKTFSEGES 83 Query: 62 ------------GIDSDIPIISKETIAQTEKAIAFY---QDILSRGGWPELPIRPL---- 102 +D + + T KA+ Y + I + ++ L Sbjct: 84 GDEILSYKLILYYLDYLSDTPNNTFDSTTTKAVKEYQTSRGIKETSKLDKTTMQTLDNEV 143 Query: 103 ---HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G SS +++ L G L + + A + A + +Q L +G + Sbjct: 144 VDYKTGKSSEDIKKYNYILYYLGYLTKEP--NSTYTAETKVACENYQKAKSLPVTGTMTP 201 Query: 160 STLEAMN 166 T +++ Sbjct: 202 QTRRSLD 208 >gi|295696385|ref|YP_003589623.1| spore cortex-lytic enzyme [Bacillus tusciae DSM 2912] gi|295411987|gb|ADG06479.1| spore cortex-lytic enzyme [Bacillus tusciae DSM 2912] Length = 241 Score = 55.4 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + + L G V L++RL G + F +V+ FQ HGL Sbjct: 32 W-AMSDKTLMKGGRGEDVYELQDRLKFLGLY--RGAIDGVFGWNTYWSVRSFQSGHGLSA 88 Query: 154 SGMVDSSTLEAM 165 +G VD T A+ Sbjct: 89 TGQVDDRTRRAL 100 >gi|238926893|ref|ZP_04658653.1| NLP/P60 protein [Selenomonas flueggei ATCC 43531] gi|238885425|gb|EEQ49063.1| NLP/P60 protein [Selenomonas flueggei ATCC 43531] Length = 251 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ L +G P K + F+ AV +FQ + + +G+V+++ Sbjct: 33 TLCEGSHGHDVLVLQRALQNAGY--PVKNIDGIFNKETGHAVAMFQRDNKIKITGVVNNA 90 Query: 161 TLEAMNVPVDLR 172 T A+ R Sbjct: 91 TWRALRNAPAKR 102 >gi|38638635|ref|NP_944336.1| gp28 [Burkholderia phage Bcep1] gi|34486017|gb|AAQ73374.1| gp28 [Burkholderia phage Bcep1] Length = 255 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G S +V L+ RL + S FDA V +A++ +Q HG+ P G+ Sbjct: 2 AAPLIVGASGRAVVFLQARLGL--------AQSGQFDASVATALRQWQEAHGMTPDGVYG 53 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIK 184 S T M + + R++ Sbjct: 54 SQTNAVMT---ARALSDIADAAARLR 76 >gi|266625139|ref|ZP_06118074.1| putative peptidoglycan binding domain protein [Clostridium hathewayi DSM 13479] gi|288862959|gb|EFC95257.1| putative peptidoglycan binding domain protein [Clostridium hathewayi DSM 13479] Length = 857 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 27/198 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG++ + L+ G + F +A FQ HGL+ G+V Sbjct: 394 SSTLKLGSNGSLTRYLQRLFNELGY---QIPIDGIFSQETHNAALSFQTTHGLEADGIVG 450 Query: 159 SSTLE------AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 T ++VP + L V + + NI N Sbjct: 451 GGTWRKLFEVYRVDVPGTGVEKLLNVVKHELAWGFAEDNAN-----NITPYGQWYEMNRS 505 Query: 213 VGLRSTVIV-----GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD---MMALLRQDPQ 264 V G +D P + + W R K + + D Sbjct: 506 PWCAMFVSYCAYQAGVLDTLVPKFAWCPSGMT----WYKNRQKYHKRNSGYIPK-KGDVI 560 Query: 265 YLKDNNIHMIDEKGKEVF 282 + ++ + + G V Sbjct: 561 FFYNDELGRVAHTGIVVD 578 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ + V+ L++ L I + AF ++AV+ FQ GL G+V + T Sbjct: 3 LKNGDTGIQVKYLQQGLKIM--CCNPGSIDSAFGPGTQAAVEKFQEEWGLTVDGIVGNDT 60 Query: 162 LE 163 Sbjct: 61 WN 62 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 A + G + + PL +G+ V L+ L I L F + Sbjct: 114 AATRARLFNEDQGGGDESMLPLSIGDRGDYVLYLQYGLRIL--CCSPGALDGVFGSGTAE 171 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 AVK FQ ++G+ +G+ D++T + + +L Sbjct: 172 AVKKFQAKYGITDNGIADTTTWNTLKGQITDIQSRL 207 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 5/78 (6%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + G LP L G+ V + L IS G + +SAV ++ R Sbjct: 256 VEDGATDALP---LKTGSRGPRVLYFQYALRIS--CINPNGTDGVYGPGTKSAVDRYKTR 310 Query: 149 HGLDPSGMVDSSTLEAMN 166 GL GMVD+ T E M Sbjct: 311 KGLTADGMVDTVTWEKMR 328 Score = 44.6 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 16/107 (14%) Query: 69 IISKETIAQTEKAIAFY----QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 + T +K A Y I W L + ++ RL+ Sbjct: 164 VFGSGTAEAVKKFQAKYGITDNGIADTTTWNTLKG----------QITDIQSRLLERNY- 212 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + + + +K +Q + L G V +T E + V+ Sbjct: 213 -SIAIVDGLATSALVETIKKYQEANWLTADGQVGPATYELLFSDVED 258 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 78 TEKAIAFYQ---DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 T+ A+ Y+ + + G + + ++ L+ L+ G + Sbjct: 300 TKSAVDRYKTRKGLTADGMVDTVTWEKMR-----DEIRPLQTALVNRGY--DVGFVDGIA 352 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSST 161 V ++V FQ H L GM+ ++T Sbjct: 353 TEKVYNSVLQFQTDHNLVADGMIGNAT 379 >gi|83955854|ref|ZP_00964396.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfitobacter sp. NAS-14.1] gi|83839859|gb|EAP79036.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfitobacter sp. NAS-14.1] Length = 162 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 6/84 (7%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MH 324 L + K E P+ PG N + + + Y +H Sbjct: 65 LTRRGYTTVTFKDPEPDWTPTPSMRERDPSLPAYMPPGPDNPLGARALHLS--WTYYRIH 122 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T + R +SGC+ + N Sbjct: 123 GTHDTRKIG---RRSSSGCIGLYN 143 >gi|218674379|ref|ZP_03524048.1| hypothetical protein RetlG_24247 [Rhizobium etli GR56] Length = 268 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 71/227 (31%), Gaps = 46/227 (20%) Query: 144 LFQMRHGLDPSG----MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 F +GL + + + + + ++Q +R + + V+V+ Sbjct: 75 QFHQTYGLPVTNPVHAAMYGELRDEDFTLPSIPVSRVQPQFLRQEVDYQTTERPGTVVVD 134 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 A L VE +R V +GR D + P W P ++ + Sbjct: 135 TKARFLYFVEGNGKAMRYGVGLGR-DGYAWSGRGVVQWKQKWPRWTPPAEMVSRQ----- 188 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YS 317 + +++ +PG N + + + Sbjct: 189 -----------------------PDVRAFSAENGGM-----NPGLQNPLGARAMYIFKDG 220 Query: 318 RNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++ Y +H TP+ +SGCVR+ ++++DL L Sbjct: 221 QDTLYRIHGTPDWQSIGK---ATSSGCVRMLNQDVVDLYDRLPAKAE 264 >gi|162456928|ref|YP_001619295.1| hypothetical protein sce8645 [Sorangium cellulosum 'So ce 56'] gi|161167510|emb|CAN98815.1| hypothetical protein sce8645 [Sorangium cellulosum 'So ce 56'] Length = 483 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+E L GD + +F +A+ Q GL +G+VD++T+ A Sbjct: 33 GAHGDGVRALQEALGTLGD---AMKADGSFGPKTHAAIVALQGAEGLPQTGIVDAATIAA 89 Query: 165 MNVPVDLRIRQ-LQVNLMRIKKLLEQ 189 ++ + R RQ L+ + R L + Sbjct: 90 LDRRLGARRRQPLEEAMARAAGLSPE 115 >gi|327188449|gb|EGE55663.1| hypothetical protein RHECNPAF_890076 [Rhizobium etli CNPAF512] Length = 204 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 47/176 (26%), Gaps = 46/176 (26%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++G +++ +L + VGR +Q +R+ +P W Sbjct: 67 PSTRIGRGAIVIATREHTLVYTTASGEQFAYPIAVGREGKQ-WYGSTRVVSKRMHPEWRP 125 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 S+ QK P G N Sbjct: 126 TASMRQK---------------------------------------NPRLPAVVKAGPAN 146 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 + + I +H T +P +SGC R+ ++ +L + T Sbjct: 147 PLGTRAIYLADG-LLRIHGTNDPSSIGTN---ASSGCFRMYREDVEELYDMVQPGT 198 >gi|325677685|ref|ZP_08157337.1| putative spore cortex-lytic enzyme [Ruminococcus albus 8] gi|324110653|gb|EGC04817.1| putative spore cortex-lytic enzyme [Ruminococcus albus 8] Length = 225 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+ V+ ++E+L G + + + +AV FQ + G+ +G TL+ Sbjct: 39 IGSYGTEVRAIQEKLKERGLFNSNVT--GYYGEITRNAVLAFQKQQGISQTGTAGPVTLK 96 Query: 164 AMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRY 195 A+ + + + N+ + + + + G Y Sbjct: 97 ALGISIGSVPAATEANVNLLARIISAEARGEPY 129 >gi|289643979|ref|ZP_06476080.1| Peptidoglycan-binding domain 1 protein [Frankia symbiont of Datisca glomerata] gi|289506207|gb|EFD27205.1| Peptidoglycan-binding domain 1 protein [Frankia symbiont of Datisca glomerata] Length = 262 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V R+++RL G S + F VK +Q +HGL G+V + T + Sbjct: 206 EVARVQQRLTDLGY---SLAVDGIFGPRTTRVVKDYQRQHGLVADGIVGARTYAQL 258 >gi|240139748|ref|YP_002964225.1| hypothetical protein MexAM1_META1p3201 [Methylobacterium extorquens AM1] gi|240009722|gb|ACS40948.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 211 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 48/178 (26%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 LV L V+ G +R V VGR + I+R + P W Sbjct: 73 ATREPVGTLVETAERRLYLVQPGGKAMRYPVSVGRAG-LAWTGRAEIDRKLEWPDWNPAP 131 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I + P+ R + G + + Sbjct: 132 DMIGRH---------------------------------------PDLPSRLEGGPFSPI 152 Query: 309 ASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + ++ Y +H T EP +SGC+R+ +++DL + T Sbjct: 153 GARALYLAQNRKDTLYRIHGTNEPETIGQ---AVSSGCIRMLNEDVMDLYERVPVGTK 207 >gi|121533679|ref|ZP_01665506.1| 3D domain protein [Thermosinus carboxydivorans Nor1] gi|121307670|gb|EAX48585.1| 3D domain protein [Thermosinus carboxydivorans Nor1] Length = 210 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L +G + V+ L+ RL + F + AVK+F+ + L+ G Sbjct: 29 ALGERVLQVGATGDDVRELQIRLNELDFYA--GTVDGVFGPQTQHAVKMFEKANNLESDG 86 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + D L M V R L R K +L+ Sbjct: 87 IADQDLLTFMQKKVPKVSRNLP---ERYKTVLD 116 >gi|254466637|ref|ZP_05080048.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacterales bacterium Y4I] gi|206687545|gb|EDZ48027.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacterales bacterium Y4I] Length = 211 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 298 FRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 + Q G N + + + F + +TY +H T +P + ++GC+R+ +++DL Sbjct: 142 YIQPGGPDNPLGARALYLFQNGVDTYFRIHGTNQPQTIGHS---VSNGCIRMLNEHVMDL 198 Query: 353 DVWLLKDTP 361 + T Sbjct: 199 YERVPLGTV 207 >gi|187934789|ref|YP_001887348.1| spore cortex-lytic enzyme, pre-pro-form [Clostridium botulinum B str. Eklund 17B] gi|187722942|gb|ACD24163.1| spore cortex-lytic enzyme, pre-pro-form [Clostridium botulinum B str. Eklund 17B] Length = 792 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 12/97 (12%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P PL L + + +V+ ++++L + + FD E AVK+FQ L Sbjct: 324 PGTPLRLNDENNNVKVIQKQLNRISQNFPAIPKIPYENGKFDKSTEDAVKVFQKVFNLTQ 383 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 G+V +T RI + V + R+ +L ++ Sbjct: 384 DGIVGRATWY--------RISSIYVGVKRLAELDQEP 412 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 13/123 (10%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG--DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G+ V+ ++ L + PS F + AV FQ GL P G Sbjct: 426 PGYLLKYGSRGEKVKEVQSYLSVISKSYNIPSIKADGIFGQMTKDAVIAFQRLFGLAPDG 485 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ +T + V IK +Q + + P L G+ Sbjct: 486 IIGINTWN----------KIYYVYKDLIKGTGQQDLNEDFDGKY-PGYLLSYGSRGEKVR 534 Query: 216 RST 218 Sbjct: 535 EMQ 537 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG+ V ++ L + L + FD E A+K Q + GL + Sbjct: 704 PGFDLELGDRDGYVTVFQKYINVLAKNNYLSNQIIENGVFDKRTEKAIKELQEKFGLKVT 763 Query: 155 GMVDSSTLE 163 G+VD T + Sbjct: 764 GIVDKLTWD 772 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 85 YQDILSRGGWPEL--------PIRPLHLGNSSVSVQRLRERLIISG--DLDPSKGLSVAF 134 Y+D++ G +L P L G+ V+ ++ L + PS F Sbjct: 499 YKDLIKGTGQQDLNEDFDGKYPGYLLSYGSRGEKVREMQTYLSVISKSYNIPSINADGIF 558 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +AV FQ GL G+V +T + Sbjct: 559 GEMTRNAVLSFQRLFGLAQDGVVGLNTWNKI 589 Score = 43.1 bits (100), Expect = 0.096, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPS 154 P L V+ L+ L IS + F +SAV FQ + GL+ Sbjct: 611 PGYVLKENLYGDDVRWLQTYLNAISEFYKEIPKIKVDGMFKKKTKSAVMEFQKKFGLNVD 670 Query: 155 GMVDSSTLEAM 165 G + + + + Sbjct: 671 GKIGVNDWKKL 681 >gi|153954823|ref|YP_001395588.1| hypothetical protein CKL_2205 [Clostridium kluyveri DSM 555] gi|146347681|gb|EDK34217.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] Length = 126 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + + ++ +H T P + + ++GC+R+ N +I+L + T Sbjct: 66 NPGGPYGARWMGLSAK-GIGIHGTNNPHSIGS---YVSNGCIRMYNKDVIELFNIVPVGT 121 Query: 361 P 361 Sbjct: 122 V 122 >gi|85703691|ref|ZP_01034795.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius sp. 217] gi|85672619|gb|EAQ27476.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius sp. 217] Length = 156 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 6/97 (6%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L + K P+ PG N + + + +H Sbjct: 59 LTRRGYTEVVRKRVGPDWTPTQSMRERDPSLPAYMPPGPGNPLGTHALYLSWP-AYLVHG 117 Query: 326 TPEPILFNNVVRFETSGCVRVRNI--IDLDVWLLKDT 360 T + R +SGC+ + N +L + T Sbjct: 118 THDTRKIG---RQSSSGCIGLYNPHIEELFAKVAVGT 151 >gi|295314760|gb|ADF97530.1| PlyM5 [uncultured phage] Length = 284 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ + L G++ +V+ L+ L +G L + F E+AVK FQ Sbjct: 205 AAKPTPSTVKRDYLLDGDTGAAVKTLQSELKQAGFL---LSVDGIFGKGTETAVKAFQRG 261 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ + + +N Sbjct: 262 NGLVVDGVFGTGSQAKLNA 280 >gi|260436504|ref|ZP_05790474.1| protein ErfK/srfK [Synechococcus sp. WH 8109] gi|260414378|gb|EEX07674.1| protein ErfK/srfK [Synechococcus sp. WH 8109] Length = 95 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 21/68 (30%) Query: 299 RQDPGKINAMASTKIEFYSRNNT------------------YMHDTPEPILFNNVVRFET 340 +D G N + S I F+ H TP R + Sbjct: 11 VEDQGANNPLGSHWIAFHRDCCGRDAHDGDAWITIKGCTTTGFHGTPHRWTVG---RAVS 67 Query: 341 SGCVRVRN 348 GCVR+ N Sbjct: 68 HGCVRLYN 75 >gi|219855282|ref|YP_002472404.1| hypothetical protein CKR_1939 [Clostridium kluyveri NBRC 12016] gi|219569006|dbj|BAH06990.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + + ++ +H T P + + ++GC+R+ N +I+L + T Sbjct: 70 NPGGPYGARWMGLSAK-GIGIHGTNNPHSIGS---YVSNGCIRMYNKDVIELFNIVPVGT 125 Query: 361 P 361 Sbjct: 126 V 126 >gi|302794749|ref|XP_002979138.1| hypothetical protein SELMODRAFT_110370 [Selaginella moellendorffii] gi|300152906|gb|EFJ19546.1| hypothetical protein SELMODRAFT_110370 [Selaginella moellendorffii] Length = 361 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 91 RGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMR 148 G W +L + H G+S ++Q+L+ + G L S + FD +E+AV+L+Q Sbjct: 37 AGAWADLLSLVDAHKGDSKPAIQKLKSYFVDFGYLGNSTLTADLSFDDALEAAVRLYQQN 96 Query: 149 HGLDPSGMVDSSTLEAMNVP 168 L +G +DS+T+ + P Sbjct: 97 FHLPVTGNLDSATIAQLVTP 116 >gi|302813804|ref|XP_002988587.1| hypothetical protein SELMODRAFT_128150 [Selaginella moellendorffii] gi|300143694|gb|EFJ10383.1| hypothetical protein SELMODRAFT_128150 [Selaginella moellendorffii] Length = 361 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 91 RGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMR 148 G W +L + H G+S ++Q+L+ + G L S + FD +E+AV+L+Q Sbjct: 37 AGAWADLLSLVDAHKGDSKPAIQKLKSYFVDFGYLGNSTLTADLSFDDALEAAVRLYQQN 96 Query: 149 HGLDPSGMVDSSTLEAMNVP 168 L +G +DS+T+ + P Sbjct: 97 FRLPVTGNLDSATIAQLVTP 116 >gi|290955225|ref|YP_003486407.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces scabiei 87.22] gi|260644751|emb|CBG67836.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces scabiei 87.22] Length = 249 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+S V L+ R+ PS G+ F +AV+ FQ +GL G+ +T Sbjct: 47 GDSGADVTELQVRVAGWAADSPSHSRVGVDGDFGPGTAAAVRRFQAAYGLTADGVAGPNT 106 Query: 162 LEAMNV 167 +N Sbjct: 107 QAKLNA 112 >gi|160879346|ref|YP_001558314.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428012|gb|ABX41575.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 667 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S + V+ L++RL G + + E+ +K FQ + L +G+V+ ST E + Sbjct: 600 MSGIDVKNLQQRLNRLGY---KVTVDGTYGKNTETVIKKFQKDNKLKETGVVNYSTWEKL 656 >gi|89056518|ref|YP_511969.1| twin-arginine translocation pathway signal [Jannaschia sp. CCS1] gi|88866067|gb|ABD56944.1| Twin-arginine translocation pathway signal [Jannaschia sp. CCS1] Length = 206 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 75/238 (31%), Gaps = 53/238 (22%) Query: 129 GLSVAFDAYVESAVKLF-QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + F + A F Q G+ +D VP L M + Sbjct: 10 TTTTLFSGAL--AAPAFAQDSVGIGIDEAIDQ------PVPAGANPWGLHERFMPTRVAR 61 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + + V+ + L +E G +R V VGR P + RI R+ P W Sbjct: 62 NGGLNVGDIHVDPTSRFLYHIEAGGTAMRYGVAVGRAGLYQP-GNFRIQRVAEWPSWTPT 120 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 ++I+++ + + V G N Sbjct: 121 ANMIRREP----------------EIYAQYAGGV-------------------PGGPDNP 145 Query: 308 MASTKIEFY-SRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + + + Y +TY +H TP+P +SGCVR+ N +I L + Sbjct: 146 LGARALYLYAGGRDTYLRIHGTPQPWSIGTS---ASSGCVRLVNDHVIQLAQNVRSGN 200 >gi|257069799|ref|YP_003156054.1| putative peptidoglycan-binding domain-containing protein [Brachybacterium faecium DSM 4810] gi|256560617|gb|ACU86464.1| putative peptidoglycan-binding domain-containing protein [Brachybacterium faecium DSM 4810] Length = 254 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V+ L++ L + +F + AV Q GL G+V T Sbjct: 60 RRGDRGAGVKSLQQDLADLRYWL--GAVDGSFGHNTQQAVYALQKAAGLAKDGVVGPKTY 117 Query: 163 EAMNVPVDLRIRQ 175 A++ V + R Sbjct: 118 SALSRGVQPKRRI 130 >gi|146342930|ref|YP_001207978.1| ErfK/YbiS/YcfS/YnhG family protein [Bradyrhizobium sp. ORS278] gi|146195736|emb|CAL79763.1| putative ErfK/YbiS/YcfS/YnhG protein family [Bradyrhizobium sp. ORS278] Length = 267 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 44/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ P L V+ LR + VGR T I+ P W P ++ + Sbjct: 140 IVIDTPNKFLYLVQGEGRALRYGIGVGRPG-FTWSGVKTISAKREWPDWTPPAEMLARR- 197 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ + G N + + + Sbjct: 198 --------------------------------------PDLPRHMEGGPQNPLGARAMYL 219 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC+R+RN Sbjct: 220 GSS-LYRIHGSNEPWTIGTN---VSSGCIRMRN 248 >gi|110346926|ref|YP_665744.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110283037|gb|ABG61097.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 202 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 24/112 (21%) Query: 264 QYLKDNNIHM----IDEKGKEVFVEEVDWNSPEPPNFIFRQDP------------GKINA 307 + + I + + G + + W S P + + R+DP G N Sbjct: 83 GFARRYGIGVGKAGLAFSGSAIIGRKAKWPSWRPTDNMIRRDPKKYARYAGGVPGGPNNP 142 Query: 308 MASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 + S + R+ Y +H T EP ++GCVR+ ++ DL Sbjct: 143 LGSRALYLYRNGRDTLYRIHGTTEPWTIGK---AVSNGCVRMVNEHVEDLYE 191 >gi|160879581|ref|YP_001558549.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428247|gb|ABX41810.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 363 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V +R L G S G +DA + + VK FQ GL G TL A Sbjct: 115 GDTGTPVTTIRTLLNNKGYTCASTGS---YDADLVNVVKSFQTAMGLSSDGSAGQGTLAA 171 Query: 165 MNVPVDL 171 + + Sbjct: 172 LEDTISD 178 Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S ++ +++ L + G F + + AVK FQ +GL G+ S+L + Sbjct: 29 SDELKAVQKALYLYGYCPGGAP-DGYFGSGMLGAVKGFQNENGLLNDGLFGQSSLTKLEA 87 >gi|209546936|ref|YP_002278854.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538180|gb|ACI58114.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 203 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 6/73 (8%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--R 347 + P PG N + + + +H T +P +SGC R+ Sbjct: 129 RLKNPRLPTVVKPGPNNPLGTRAMYLADG-LLRIHGTNDPSSIGTN---ASSGCFRMYRE 184 Query: 348 NIIDLDVWLLKDT 360 ++ +L + T Sbjct: 185 DVEELYDMVQPGT 197 >gi|312143788|ref|YP_003995234.1| cell wall hydrolase SleB [Halanaerobium sp. 'sapolanicus'] gi|311904439|gb|ADQ14880.1| cell wall hydrolase SleB [Halanaerobium sp. 'sapolanicus'] Length = 229 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L GN + V L+++L + S L + AVK FQ + L G+ Sbjct: 36 SRALSRGNEGLDVAVLQQKLKQLNYYNSS--LDGLYGDATVEAVKGFQRDNDLKADGVFA 93 Query: 159 SS 160 + Sbjct: 94 EA 95 >gi|227822139|ref|YP_002826110.1| putative ErfK/YbiS/YhnG oxidoreductase [Sinorhizobium fredii NGR234] gi|227341139|gb|ACP25357.1| putative ErfK/YbiS/YhnG oxidoreductase [Sinorhizobium fredii NGR234] Length = 194 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 44/197 (22%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + ++ R + ++VN L V+ G +R + V Sbjct: 26 IGRTIESPIASRTRIDPRYRRQEVAYHGGEAPGTIVVNTEERYLYYVQGGGWAVRYGIGV 85 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G R T + I R P W S++++ LRQ Sbjct: 86 GEEGR-TLKGKATIGRKAEWPSWTPTESMMRRK--PHLRQ-------------------- 122 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRF 338 + G N + ++ + + +H T EP Sbjct: 123 --------------YAGGVSGGLHNPLGASALYLYRGGNDTMFRLHGTNEPWTIGQ---A 165 Query: 339 ETSGCVRVRNIIDLDVW 355 +SGC+R+ N D+ Sbjct: 166 VSSGCIRLTN-DDIVDL 181 >gi|163735642|ref|ZP_02143073.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] gi|161391070|gb|EDQ15408.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] Length = 149 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 43/152 (28%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 V+ A L +E+G +R V + R + P I R + P+W S+I+ Sbjct: 14 VDAVARYLYHIEDGGTAMRYGVAIARGNLYEP-GTYTIKRKVEWPHWTPTASMIE----- 67 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF-- 315 ++P+Y D Q+PG N + S + Sbjct: 68 ---RNPEYA-----QWADG-----------------------QEPGPSNPLGSRALYLFV 96 Query: 316 YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 +R+ +H +PE R +SGCVR+ Sbjct: 97 GNRDTYLRIHGSPEARSIG--GRA-SSGCVRM 125 >gi|90425763|ref|YP_534133.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90107777|gb|ABD89814.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 225 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 54/190 (28%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + + PV R+ V+ R + ++V+ L V++G +R + V Sbjct: 45 VSYVKTPVAEPFRRAIVDYHRKETPGS-------IVVDSDNHYLYLVQDGGKAIRYGITV 97 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G ++I + P W +S I + + Sbjct: 98 GEEA-MAWSGIAKIGNMAEWPPWHPTQSEISRLGVPKF---------------------- 134 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS--RNNTY-MHDTPEPILFNNVVRF 338 PG N M S + YS ++ + +H T +P Sbjct: 135 ------------------VAPGPDNPMGSRALYLYSGGKDTLFRIHGTNQPEYIGAS--- 173 Query: 339 ETSGCVRVRN 348 +SGC+R+ N Sbjct: 174 ISSGCIRLTN 183 >gi|15894296|ref|NP_347645.1| cell wall biogenesis enzymedomain-containing related to L-alanoyl-D-glutamate peptidase); peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|15023918|gb|AAK78985.1|AE007616_7 Cell wall biogenesis enzyme (N-terminal domain related to N-Acetylmuramoyl-L-alanine amidase and C-terminal domain related to L-alanoyl-D-glutamate peptidase); peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325508424|gb|ADZ20060.1| Cell wall biogenesis enzyme [Clostridium acetobutylicum EA 2018] Length = 279 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P L L SV+ L+ L ++ FD+ V+ FQ+ H L P Sbjct: 2 PTFP--TLRLYYEGPSVRILQMNLYGLNYRYNGLKVTGVFDSLTYEVVRDFQVEHKLVPD 59 Query: 155 GMVDSSTLEAMNVPVDLRIRQL 176 G+V T + V +L Sbjct: 60 GIVGPITWSVLLSQVTSIQNKL 81 Score = 43.1 bits (100), Expect = 0.086, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V ++ +L + F AV FQ +GL +G+VD T + + Sbjct: 72 SQVTSIQNKLNSV--YFTVGTPNGIFGPVTIDAVTRFQSVNGLVKNGVVDPRTRQQL 126 >gi|39934687|ref|NP_946963.1| ErfK/YbiS/YcfS/YnhG protein [Rhodopseudomonas palustris CGA009] gi|192290204|ref|YP_001990809.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] gi|39648537|emb|CAE27058.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] gi|192283953|gb|ACF00334.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 193 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 46/175 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + E ++++ L V+ LR + VGR D RI Sbjct: 51 RETVMFEGNYAPGTIVISTRERRLYLVQGDGTALRYGIGVGR-DGFRWSGTHRITAKREW 109 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 110 PGWTPPAQMLRRR---------------------------------------PDLPRYMA 130 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 G+ N + + + +H + EP +SGC R+ N + DL Sbjct: 131 GGEDNPLGARAMYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTNDDVKDLYD 181 >gi|308232610|ref|ZP_07416616.2| hydrolase [Mycobacterium tuberculosis SUMu001] gi|308371501|ref|ZP_07425158.2| hydrolase [Mycobacterium tuberculosis SUMu003] gi|308371550|ref|ZP_07425287.2| hydrolase [Mycobacterium tuberculosis SUMu004] gi|308375032|ref|ZP_07442437.2| hydrolase [Mycobacterium tuberculosis SUMu007] gi|308376280|ref|ZP_07438228.2| hydrolase [Mycobacterium tuberculosis SUMu008] gi|308378515|ref|ZP_07482827.2| hydrolase [Mycobacterium tuberculosis SUMu009] gi|308379665|ref|ZP_07487059.2| hydrolase [Mycobacterium tuberculosis SUMu010] gi|308380864|ref|ZP_07491276.2| hydrolase [Mycobacterium tuberculosis SUMu011] gi|308213429|gb|EFO72828.1| hydrolase [Mycobacterium tuberculosis SUMu001] gi|308328608|gb|EFP17459.1| hydrolase [Mycobacterium tuberculosis SUMu003] gi|308336263|gb|EFP25114.1| hydrolase [Mycobacterium tuberculosis SUMu004] gi|308347665|gb|EFP36516.1| hydrolase [Mycobacterium tuberculosis SUMu007] gi|308351583|gb|EFP40434.1| hydrolase [Mycobacterium tuberculosis SUMu008] gi|308352290|gb|EFP41141.1| hydrolase [Mycobacterium tuberculosis SUMu009] gi|308356293|gb|EFP45144.1| hydrolase [Mycobacterium tuberculosis SUMu010] gi|308360180|gb|EFP49031.1| hydrolase [Mycobacterium tuberculosis SUMu011] Length = 324 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + + F +A+ +Q +GL G+ TL ++ Sbjct: 23 GDDVATLQARLQDLGFY--TGLVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 78 >gi|84503185|ref|ZP_01001270.1| hypothetical protein OB2597_16522 [Oceanicola batsensis HTCC2597] gi|84686751|ref|ZP_01014638.1| hypothetical protein 1099457000266_RB2654_22278 [Maritimibacter alkaliphilus HTCC2654] gi|114762600|ref|ZP_01442044.1| ErfK/YbiS/YcfS/YnhG [Pelagibaca bermudensis HTCC2601] gi|84388426|gb|EAQ01375.1| hypothetical protein OB2597_16522 [Oceanicola batsensis HTCC2597] gi|84665182|gb|EAQ11661.1| hypothetical protein RB2654_22278 [Rhodobacterales bacterium HTCC2654] gi|114544855|gb|EAU47860.1| ErfK/YbiS/YcfS/YnhG [Roseovarius sp. HTCC2601] Length = 151 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 42/148 (28%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A L +E G +R V + + D P I R + P+W +S+I+ + Sbjct: 12 ARYLYHIEEGGTAMRYGVAIAKGDLYEP-GTYTIRRKVEWPHWTPTQSMIE--------R 62 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN 320 DP+ + F +PG NA+ S + F + Sbjct: 63 DPEAYER---------------------------FADGMEPGPNNALGSRALYLFVGDRD 95 Query: 321 TY--MHDTPEPILFNNVVRFETSGCVRV 346 TY +H TP P R +SGCVR+ Sbjct: 96 TYLRIHGTPSPRSIG--GRA-SSGCVRM 120 >gi|319650801|ref|ZP_08004939.1| hypothetical protein HMPREF1013_01545 [Bacillus sp. 2_A_57_CT2] gi|317397499|gb|EFV78199.1| hypothetical protein HMPREF1013_01545 [Bacillus sp. 2_A_57_CT2] Length = 205 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ L G++ V ++ L G + + E+AV+ FQ GL Sbjct: 22 PKADAAVLKNGSAGPEVTYIQSALQKLGYFNTDNT--GYYGTVTENAVRNFQYDFGLAAD 79 Query: 155 GMVDSST 161 G+V +T Sbjct: 80 GIVGVNT 86 >gi|222084255|ref|YP_002542781.1| hypothetical protein Arad_0072 [Agrobacterium radiobacter K84] gi|221721703|gb|ACM24859.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 224 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 45/197 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I++++ R + ++VN L + +R + VG+ + Sbjct: 58 PAIPIQKVKPQFRRQIVAYQSNEAEGTIIVNTRERHLYYILGNGEAMRYGIGVGKQG-FS 116 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P+ + + + + Y+ Sbjct: 117 WSGTAYVAWKQEWPTWHPPKEMAVRR--PEIAK---YVDGG------------------- 152 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCV 344 +PG N + + + Y+ +H TPE +SGC+ Sbjct: 153 -----------MNPGLSNPLGARAMYLYNEKGQDTLFRLHGTPEWASIGT---AASSGCI 198 Query: 345 RV--RNIIDLDVWLLKD 359 R+ +++IDL +L Sbjct: 199 RLINQDVIDLYSRVLPG 215 >gi|299134453|ref|ZP_07027646.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298591200|gb|EFI51402.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 263 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 40/183 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ + Q++ R + ++V+ PA L V G+ R + VGR + Sbjct: 82 PEVDVSQVERRYWRRDVDYTSSEDVGTLIVDTPAKYLYHVLPGQRATRYGIGVGREGFE- 140 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P WV P S+IQ+ L++ +++ Sbjct: 141 WSGRALVAYGRAWPRWVPPDSMIQRQ--PELKR---------YSIVNGG----------- 178 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYS--RNNTY-MHDTPEPILFNNVVRFETSGCVR 345 PG N + + + + R+ Y +H T EP +SGC+R Sbjct: 179 -----------MQPGLRNPLGARALYIHDHGRDTLYRLHGTSEPGSIGK---AVSSGCIR 224 Query: 346 VRN 348 + N Sbjct: 225 LLN 227 >gi|298493144|ref|YP_003723321.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298235062|gb|ADI66198.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 200 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V+ ++ L I + + V+ FQ R+GL G+V ST Sbjct: 142 LRQGARGERVRVVQRALGI--------RVDGVYGPNTAYHVRNFQRRNGLLVDGIVGPST 193 Query: 162 LEAMNVP 168 A+ + Sbjct: 194 RRALGIS 200 >gi|226357324|ref|YP_002787064.1| hypothetical protein Deide_22781 [Deinococcus deserti VCD115] gi|226319314|gb|ACO47310.1| Conserved hypothetical protein, precursor [Deinococcus deserti VCD115] Length = 295 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + ++ + RLI + + + V+ FQ + L +G +D +T A+ Sbjct: 222 MNGSDIRAAQNRLIQLTEDSRGGQGDGWYGPVTAATVRAFQAANNLPVTGRIDQATWRAL 281 Query: 166 NVPVD 170 P Sbjct: 282 FSPAA 286 >gi|332974764|gb|EGK11680.1| spore cortex-lytic enzyme [Desmospora sp. 8437] Length = 234 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 12/91 (13%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + V L+ RL G + E V FQ H L G+ + T Sbjct: 38 GSKNGDVWDLQARLNKLGY---KTKRDGVYGLQTERQVIQFQKDHKLRIDGISGAQTWGE 94 Query: 165 M---------NVPVDLRIRQLQVNLMRIKKL 186 + V ++ + K + Sbjct: 95 LKKLTPSHGGKVSGKASADKVSLTQEDRKWM 125 >gi|332799446|ref|YP_004460945.1| carboxyl-terminal protease [Tepidanaerobacter sp. Re1] gi|332697181|gb|AEE91638.1| carboxyl-terminal protease [Tepidanaerobacter sp. Re1] Length = 473 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L GN + V +++RL + F + AVK Q + GL + Sbjct: 372 PLNSQKTLKYGNIGLEVLGIQQRLRFLNLF--NTTPDGVFGPRTQQAVKALQQKAGLPST 429 Query: 155 GMVDSSTLEAMN 166 G+VD++ +A++ Sbjct: 430 GVVDANFYKALD 441 >gi|321314327|ref|YP_004206614.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|320020601|gb|ADV95587.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis BSn5] Length = 273 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 7/78 (8%) Query: 97 LPIRPLH---LGNSSVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMRH 149 LP S +V++++ L K G+ + A++ FQ+ + Sbjct: 193 LPSGIFKVKSPLMHSAAVEQIQTALAALHFYPDKKAKNFGIDSYYGPKTADAIRRFQLMN 252 Query: 150 GLDPSGMVDSSTLEAMNV 167 GL+P G+ T + Sbjct: 253 GLNPDGIYGPETKAKIEA 270 >gi|316935215|ref|YP_004110197.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315602929|gb|ADU45464.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 192 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 46/196 (23%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 M R + R + E + ++++ L V+ LR + Sbjct: 29 LRAVMGFGPFYRSGPSANPIPRETVMFEGRYAPGTIVISTRERRLYLVQGDGTALRYGIG 88 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VGR D RI P W P ++++ Sbjct: 89 VGR-DGFRWSGTHRITAKREWPGWTPPAQMLRRR-------------------------- 121 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P+ G+ N + + + +H + EP + Sbjct: 122 -------------PDLPRYMAGGEDNPLGARAMYLG-STLYRIHGSNEPETIGQ---AVS 164 Query: 341 SGCVRVRN--IIDLDV 354 SGC R+ N + DL Sbjct: 165 SGCFRMTNDDVKDLYD 180 >gi|229164005|ref|ZP_04291942.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus R309803] gi|228619388|gb|EEK76277.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus R309803] Length = 153 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 36/163 (22%), Gaps = 59/163 (36%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++ +NGK TV G+ TP +I + N + I D Sbjct: 39 KMDFYQNGKFVKSFTVATGKAATPTPKGTFKIVNKIKNRPYYT-GKIKGGD--------- 88 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY- 322 N + + Sbjct: 89 ----------------------------------------PRNPLGDRWLGLNMAGTYGT 108 Query: 323 ---MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 +H T T GC+R+ N WL + P Sbjct: 109 TYAIHGTNNNQAIGK---ATTLGCIRMYNND--VRWLFERIPE 146 >gi|23501051|ref|NP_697178.1| putative lipoprotein [Brucella suis 1330] gi|161618128|ref|YP_001592015.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|260567222|ref|ZP_05837692.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|23346917|gb|AAN29093.1| lipoprotein, putative [Brucella suis 1330] gi|161334939|gb|ABX61244.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|260156740|gb|EEW91820.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] Length = 206 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++ + Sbjct: 33 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMSEGKAVRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 93 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 186 >gi|17231422|ref|NP_487970.1| hypothetical protein alr3930 [Nostoc sp. PCC 7120] gi|17133064|dbj|BAB75629.1| alr3930 [Nostoc sp. PCC 7120] Length = 228 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 6/105 (5%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 S P + + +A+ ++ I I S L NS VSV+ L+ Sbjct: 122 NFTKFKKSSFP--NSQELARKQRNINNI-VIASSQTLTNPISPNLSFSNSGVSVRVLQRL 178 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 L+ +G + F E AVK FQ + L G+V T Sbjct: 179 LVANGY---PIPVDGVFGPVTEIAVKAFQEQQNLTVDGIVGVQTW 220 >gi|313897890|ref|ZP_07831431.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] gi|312957425|gb|EFR39052.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] Length = 226 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y G+P L G+ V V L++ L G ++ L F +A+ Sbjct: 135 KRYGTPACSAGFP-----VLRSGSRGVYVLILQDALNALGY--STQTLDGVFGGNTRNAL 187 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 +Q +GL G+V T + Sbjct: 188 VAYQRDNGLSADGVVGCGTWTRI 210 >gi|295106181|emb|CBL03724.1| Putative peptidoglycan-binding domain-containing protein [Gordonibacter pamelaeae 7-10-1-b] Length = 301 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ V+ L++ L G F AY E A++ Sbjct: 66 WSALVDASYFLGDRTLYLRMPHFHGHDVEELQQALGALGF--ACGANDGIFGAYTELALR 123 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 FQ+ GL G+ + T A+ Sbjct: 124 KFQLNLGLPSDGIAGAYTYAAIR 146 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P+ + ++ +V+ +++RL G LD + AF +AV+ F ++ GL V Sbjct: 3 PMETIKRHDTGAAVEDVQQRLATIGLLDQ-AAIDGAFGEQTAAAVRAFCIQAGLPAGEDV 61 Query: 158 DSSTLEAM 165 A+ Sbjct: 62 TGKVWSAL 69 >gi|126729119|ref|ZP_01744933.1| ErfK/YbiS/YcfS/YnhG family protein [Sagittula stellata E-37] gi|126710109|gb|EBA09161.1| ErfK/YbiS/YcfS/YnhG family protein [Sagittula stellata E-37] Length = 187 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 66/228 (28%), Gaps = 54/228 (23%) Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN-----LMRIKKLLEQKMGLRYVLVNIP 201 R L SG+V + A+ VP R ++ N + + + +G ++ + Sbjct: 7 TRRALLNSGLVAGA--AALIVPATARAADVRRNVSSFVMQDWRDHFSE-IGKGCIVCDTE 63 Query: 202 AASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 + +L +G V + D T ++ I R P W S + + Sbjct: 64 SRALHYWAADGVDYRIYPTSVPKSDELTKRGYTEIVRKKVGPSWTPTASQM--ERFP--- 118 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 DW N + + + Sbjct: 119 --------------------------DWKPVAGGA--------PDNPLGTHAMYLSWP-A 143 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 +H T + R + GC+ + N + L + TP ++ + Sbjct: 144 YLIHGTHDTRKIG---RRSSDGCIGLYN-EKIAE-LFEITPIGTQVRL 186 >gi|311747003|ref|ZP_07720788.1| putative peptidoglycan binding domain protein [Algoriphagus sp. PR1] gi|126578703|gb|EAZ82867.1| putative peptidoglycan binding domain protein [Algoriphagus sp. PR1] Length = 274 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 12/148 (8%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +V L+E L G S S FD ++AVK FQ +H L G V T + Sbjct: 8 SRGAAVSFLQELLNKVGY---SLNPSGYFDLTTDAAVKDFQQKHDLVVDGKVGVKTWT-I 63 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 + + K L EQ + + + L AV+ S + Sbjct: 64 LISKTNPAGTIGN-----KFLSEQDLIDFSIKYEL---ELAAVKAVNEVESSGIGFLVNG 115 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQK 253 + + + + P ++ + Sbjct: 116 KPKILFEGHVFWRQLKSRGIDPNQLMHE 143 >gi|315169844|gb|EFU13861.1| peptidase [Enterococcus faecalis TX1342] Length = 480 Score = 55.0 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV+ Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVRDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|307309484|ref|ZP_07589140.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307320605|ref|ZP_07600019.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306893755|gb|EFN24527.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306900069|gb|EFN30689.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 206 Score = 55.0 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + R++ R + V+V+ P L +E G +R V +GR Sbjct: 32 PAVPYREMDPKYFRQRVPDPTGEPAGTVVVDTPGRFLYLIEPGGTAMRYGVGIGREGFA- 90 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I+ P W P +I + L + + + Sbjct: 91 WQGEGIIHWRQPWPRWKPPADMIARR--PELEK---------YSVANGG----------- 128 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVR 345 PG N + + + F + + +H TPE +SGCVR Sbjct: 129 -----------MAPGIDNPLGARALYIFQNGQDTLYRLHGTPEWKSIGK---AVSSGCVR 174 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + P Sbjct: 175 LVNQDVIDLYKRVPYHAP 192 >gi|297155629|gb|ADI05341.1| putative serine-threonine protein kinase [Streptomyces bingchenggensis BCW-1] Length = 562 Score = 55.0 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ +V++++ L G+ F ++AV FQ H L G V T A Sbjct: 500 GSRGAAVRQVQCILKARKYDIGPHGIDGQFGPDTKAAVIAFQRDHNLHRDGQVGEDTWPA 559 Query: 165 MNV 167 + Sbjct: 560 LRA 562 >gi|229159834|ref|ZP_04287841.1| hypothetical protein bcere0009_6350 [Bacillus cereus R309803] gi|228623573|gb|EEK80392.1| hypothetical protein bcere0009_6350 [Bacillus cereus R309803] Length = 253 Score = 55.0 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + + +H T + ++GC+R+ Sbjct: 67 TKYKNKEYHRKKIPGGAPNNPLGTRWLGLDKKE-YAIHGTNREWTIGSRE---SNGCIRM 122 Query: 347 RNIIDLDVWLLKDTP 361 + D+ WL P Sbjct: 123 HD-RDI-QWLYDRVP 135 >gi|156742786|ref|YP_001432915.1| peptidoglycan binding domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156234114|gb|ABU58897.1| Peptidoglycan-binding domain 1 protein [Roseiflexus castenholzii DSM 13941] Length = 554 Score = 55.0 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 42/161 (26%), Gaps = 18/161 (11%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 + SL Y ++ + I + + + Sbjct: 70 TVARSLDALAFTVGNDIAFAPGQYQPGSDEGRALLAHELTHTIQQTGGAVRVQ-----RQ 124 Query: 81 AIAFYQDILSRGGWPELPIRP------------LHLGNSSVSVQRLRERLIISGDLDPSK 128 + Q + + G PE P + G+ V ++ L G P Sbjct: 125 TLPDLQGVGANLGLPETMQSPPSSGLQSGGRRMISYGSQGPDVADAQQLLNQHG-AAPPL 183 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + F A FQ GL P G++ T A+ Sbjct: 184 AVDGIFGPKTRQATIAFQKSRGLAPDGIIGPLTWGALESGA 224 >gi|56963123|ref|YP_174850.1| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16] gi|56909362|dbj|BAD63889.1| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16] Length = 301 Score = 55.0 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R + G + L+ L ++G F E AV+ FQ GL G+ Sbjct: 235 AARNVRKGAKGNLTRVLQALLYMAGH--NPGPFDGVFGNGTEKAVRAFQRDKGLGVDGIA 292 Query: 158 DSSTLEAM 165 +T A+ Sbjct: 293 GKNTWRAL 300 >gi|255659023|ref|ZP_05404432.1| LysM domain protein [Mitsuokella multacida DSM 20544] gi|260848808|gb|EEX68815.1| LysM domain protein [Mitsuokella multacida DSM 20544] Length = 187 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ +V++++ LI G L + +A+K FQ +GLD G+ + T Sbjct: 21 RQGSRGPAVRQVQSLLIEQGWLTGAA--DGICGNQTVAAIKSFQKANGLDADGVCGNGTY 78 Query: 163 EAMN 166 ++ Sbjct: 79 SVLS 82 >gi|154686539|ref|YP_001421700.1| hypothetical protein RBAM_021080 [Bacillus amyloliquefaciens FZB42] gi|154352390|gb|ABS74469.1| SleB [Bacillus amyloliquefaciens FZB42] Length = 289 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + G+ P Sbjct: 29 AFSNQVIQRGATGDDVIELQARLQYNGFY--NGKIDGVYGWTTYWAVRNFQEKFGMKPVD 86 Query: 155 GMVDSST 161 G+V + T Sbjct: 87 GLVGAKT 93 >gi|307265107|ref|ZP_07546667.1| spore cortex-lytic enzyme [Thermoanaerobacter wiegelii Rt8.B1] gi|326390828|ref|ZP_08212380.1| spore cortex-lytic enzyme [Thermoanaerobacter ethanolicus JW 200] gi|306919905|gb|EFN50119.1| spore cortex-lytic enzyme [Thermoanaerobacter wiegelii Rt8.B1] gi|325993087|gb|EGD51527.1| spore cortex-lytic enzyme [Thermoanaerobacter ethanolicus JW 200] Length = 236 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G + + F AV+ FQ +GL +G+VD T A Sbjct: 42 GNTGSDVAKVQARLKDWGYY--TGAVDGFFGVRTWLAVRKFQAYNGLRVTGIVDDDTKVA 99 Query: 165 MNVPVDL 171 + Sbjct: 100 LGFTTTA 106 >gi|317122862|ref|YP_004102865.1| ErfK/YbiS/YcfS/YnhG family protein [Thermaerobacter marianensis DSM 12885] gi|315592842|gb|ADU52138.1| ErfK/YbiS/YcfS/YnhG family protein [Thermaerobacter marianensis DSM 12885] Length = 260 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 12/87 (13%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVV 336 G+ V + + +H T P Sbjct: 102 GRPGEPSPVGEWRVTDIAHW------PGGPFGARWFGLSAPWGSYGIHGTNNPGSIGT-- 153 Query: 337 RFETSGCVRV--RNIIDLDVWLLKDTP 361 + + GC+R+ +++ LD + TP Sbjct: 154 -YASLGCIRMFNEDVLTLDDLVKVGTP 179 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 10/85 (11%) Query: 85 YQDILSRGGWPELPIRP--------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 D++ G ++ G V L+ L +G + Sbjct: 170 LDDLVKVGTPVKITGTTEVYYKLPVYRRGAVGQDVALLQLSLRAAGF--NPGVADGVYGG 227 Query: 137 YVESAVKLFQMRHGLDPSGMVDSST 161 E AV + GL+P G D++ Sbjct: 228 TTEKAVAAAEWWFGLEPDGTADAAL 252 >gi|307300910|ref|ZP_07580679.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|306903865|gb|EFN34451.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 246 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 42/185 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 I +++ +R + V+++ L V+ G + LR + VG+ + Sbjct: 58 PATDISKVEPRFLRQQVPYVTHEPPGTVVIDTENRFLYLVQGGGMALRYGIGVGKAGLE- 116 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +R+ R P W ++ ++ Sbjct: 117 FEGEARVGRKAEWPRWTPTSDMVAREP--------------------------------- 143 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 DPG N + + +R+ + +H T E +SGC+R Sbjct: 144 --ERYGPLAGGMDPGLRNPLGPRALYLYQGNRDTLFRIHGTTEAWSIGK---AVSSGCIR 198 Query: 346 VRNII 350 + N Sbjct: 199 LFNPD 203 >gi|307320727|ref|ZP_07600139.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306893654|gb|EFN24428.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] Length = 246 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 42/185 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 I +++ +R + V+++ L V+ G + LR + VG+ + Sbjct: 58 PATDISKVEPRFLRQQVPYVTHEPPGTVVIDTENRFLYLVQGGGMALRYGIGVGKAGLE- 116 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +R+ R P W ++ ++ Sbjct: 117 FEGEARVGRKAEWPRWTPTSDMVAREP--------------------------------- 143 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 DPG N + + +R+ + +H T E +SGC+R Sbjct: 144 --ERYGPLAGGMDPGLRNPLGPRALYLYQGNRDTLFRIHGTTEAWSIGK---AVSSGCIR 198 Query: 346 VRNII 350 + N Sbjct: 199 LFNPD 203 >gi|295314762|gb|ADF97531.1| PlyM6 [uncultured phage] Length = 357 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ + L G + +V+ L+ L +G L + F E+AVK FQ Sbjct: 205 AAKPTPSTVKRDYLLDGVTGAAVKTLQSELKQAGFL---LSVDGVFGKGTETAVKAFQRA 261 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ + + +N Sbjct: 262 NGLAVDGVFGTGSQAKLNA 280 >gi|225574799|ref|ZP_03783409.1| hypothetical protein RUMHYD_02876 [Blautia hydrogenotrophica DSM 10507] gi|225037999|gb|EEG48245.1| hypothetical protein RUMHYD_02876 [Blautia hydrogenotrophica DSM 10507] Length = 619 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ +V+ ++ LI G G F ++A + FQ +GL+ G +T + Sbjct: 393 GDQGEAVKVYQKNLIEIGYNCGKNGADGDFGPATKAATQEFQGDYGLEQDGNAGPATQKK 452 Query: 165 MNVPVDLRIRQ 175 ++ V + + Sbjct: 453 LSAEVKKKEQT 463 >gi|311032631|ref|ZP_07710721.1| putative muramoyl-pentapeptide carboxypeptidase [Bacillus sp. m3-13] Length = 240 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK-----GLSVAFDAYVESAVKLFQMRHGLDP 153 R L G+S V+ L+ R ++G S + F ++AV FQ +GL Sbjct: 35 TRTLSEGSSGTDVRELQIR--VAGWAADSPQQTVVSVDGQFGPGTKAAVIRFQRAYGLTA 92 Query: 154 SGMVDSSTLEAMN 166 G+V T +N Sbjct: 93 DGVVGPQTQAKLN 105 >gi|15963816|ref|NP_384169.1| hypothetical protein SMc02582 [Sinorhizobium meliloti 1021] gi|15072991|emb|CAC41450.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 278 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 45/190 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I ++ R K ++VN P+ L V G +R + VG+ Sbjct: 112 PGVPINRVDQRFHRQIVDYPTKERPGTIVVNTPSRFLYYVLPGGKAVRYGIGVGKQGFA- 170 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P K+M + +Y++ Sbjct: 171 WEGEAYVAWKQEWPTWHPP-----KEMAERKPEVARYVEAG------------------- 206 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCV 344 PG N + + + +++ +H TPE +SGC+ Sbjct: 207 -----------MGPGISNPLGARALYLFNKEGRDTLFRLHGTPEWSSIGT---AASSGCI 252 Query: 345 RV--RNIIDL 352 R+ ++I+DL Sbjct: 253 RLMNQDIMDL 262 >gi|85716003|ref|ZP_01046980.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] gi|85697201|gb|EAQ35082.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] Length = 374 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 48/190 (25%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 +QL L R + K ++V+ L + +R V VGR D T Sbjct: 174 KQLPERLRRKEVTFATKEPAGTIVVDTSNTHLYYILGNNRAIRYGVRVGR-DGFTWSGVQ 232 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 +I+R P W P +I++ Sbjct: 233 KISRKAEWPDWHPPTEMIERQ--------------------------------------- 253 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNII 350 P G N + + + S Y +H T +P F +SGC+ + ++ Sbjct: 254 PYLPRFMAGGPGNPLGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCIGMLNEDVS 308 Query: 351 DLDVWLLKDT 360 DL + T Sbjct: 309 DLFDRVKVGT 318 >gi|300864980|ref|ZP_07109811.1| Glycoside hydrolase family 25 [Oscillatoria sp. PCC 6506] gi|300337015|emb|CBN54961.1| Glycoside hydrolase family 25 [Oscillatoria sp. PCC 6506] Length = 440 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+ + VQ +++ L G + + +SA FQ GL+ G+V Sbjct: 189 ESLREGSPAPKVQEIQKHLKNKGFY--QGTIDGNYSTSTKSAAIAFQKSQGLEADGIVGL 246 Query: 160 STLEAM 165 TL A+ Sbjct: 247 KTLTAL 252 >gi|158424653|ref|YP_001525945.1| putative chitinase [Azorhizobium caulinodans ORS 571] gi|158331542|dbj|BAF89027.1| putative chitinase [Azorhizobium caulinodans ORS 571] Length = 293 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L+ +L G + E AV+ FQ ++ L G+ TL A+ Sbjct: 228 VSDLQSKLNRLGY---RLTADGRYGPKTEEAVRDFQSKNDLKTDGIAGPVTLAALEA 281 >gi|153853426|ref|ZP_01994835.1| hypothetical protein DORLON_00824 [Dorea longicatena DSM 13814] gi|149754212|gb|EDM64143.1| hypothetical protein DORLON_00824 [Dorea longicatena DSM 13814] Length = 102 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V +++E+L +I+G + +V+ FQ GL + Sbjct: 17 PGYTLEIGSSGNKVLQMQEQLNVIAGAYPAIPKITADGIYGPATAESVRTFQKVFGLPQT 76 Query: 155 GMVDSSTLEAMN 166 G VD +T ++ Sbjct: 77 GTVDYTTWYKIS 88 >gi|315145030|gb|EFT89046.1| peptidase [Enterococcus faecalis TX2141] Length = 480 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + L + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAYLVDENNAN--YTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|218463532|ref|ZP_03503623.1| hypothetical protein RetlK5_30719 [Rhizobium etli Kim 5] Length = 244 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R + L ++V+ P+ L V+ + +R V +GR Sbjct: 79 PAVPYEEIDPRYYRQRVLDPTGQPPGTIVVDTPSRFLYLVQADGMAMRYGVGIGREGFA- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + E V + Sbjct: 138 WQGSGVIQWRQKWPRWKPPNEMVARQ----------------------------PELVKY 169 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVR 345 + +PG N + + + F + + Y +H P+ +SGCVR Sbjct: 170 SIENGGM-----EPGLKNPLGARALYIFSNGEDTLYRLHGNPDWRSIGK---AVSSGCVR 221 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 222 LLNQDIIDLYDRVPTKAP 239 >gi|27375685|ref|NP_767214.1| hypothetical protein blr0574 [Bradyrhizobium japonicum USDA 110] gi|27348823|dbj|BAC45839.1| blr0574 [Bradyrhizobium japonicum USDA 110] Length = 171 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 39/148 (26%), Gaps = 45/148 (30%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L + + +R V VG+ +Q +RI+ NP W P + + Sbjct: 48 ERRLYLILDDGHAVRYPVGVGKSGKQ-WAGTTRIDGKYRNPAWSPPAEVKR--------- 97 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNN 320 + P G N M + Sbjct: 98 ------------------------------DKPQLPDVIPGGSPRNPMGVAAMTLAGGE- 126 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T P F + GC+R+ N Sbjct: 127 YAIHGTNVPGSVG---GFVSYGCIRMLN 151 >gi|258652666|ref|YP_003201822.1| peptidoglycan-binding protein [Nakamurella multipartita DSM 44233] gi|258555891|gb|ACV78833.1| Peptidoglycan-binding domain 1 protein [Nakamurella multipartita DSM 44233] Length = 201 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + + G WP L NS+V+V+ L+ L + F +AV+ FQ Sbjct: 47 AVPAVGTWPVLSHGVA---NSAVTVRSLQYLLNA---HASCLAVDGVFGPRTTAAVRNFQ 100 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVD 170 RH L G+V T A+ V + Sbjct: 101 ARHALVVDGIVGPQTWTALLVTIR 124 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 14/116 (12%) Query: 69 IISKETIAQTEKAIAF----YQDILSRGGWPELPIRPLHLGNSSVSVQRLR----ERLII 120 + T A A I+ W L + + G+ +VQ + R + Sbjct: 87 VFGPRTTAAVRNFQARHALVVDGIVGPQTWTAL-LVTIRRGSVGPAVQAFQDQMNARAVA 145 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMR----HGLDPSGMVDSSTLEAMNVPVDLR 172 +G + F ESAV FQ R G G+V T + V R Sbjct: 146 AGQAPFLA-VDGIFGPKTESAVYYFQNRLADYWGTTVDGIVGPQTWQPTISNVLPR 200 >gi|167039266|ref|YP_001662251.1| cell wall hydrolase SleB [Thermoanaerobacter sp. X514] gi|256751676|ref|ZP_05492551.1| spore cortex-lytic enzyme [Thermoanaerobacter ethanolicus CCSD1] gi|300913906|ref|ZP_07131223.1| spore cortex-lytic enzyme [Thermoanaerobacter sp. X561] gi|307725409|ref|YP_003905160.1| spore cortex-lytic enzyme [Thermoanaerobacter sp. X513] gi|166853506|gb|ABY91915.1| cell wall hydrolase, SleB [Thermoanaerobacter sp. X514] gi|256749485|gb|EEU62514.1| spore cortex-lytic enzyme [Thermoanaerobacter ethanolicus CCSD1] gi|300890591|gb|EFK85736.1| spore cortex-lytic enzyme [Thermoanaerobacter sp. X561] gi|307582470|gb|ADN55869.1| spore cortex-lytic enzyme [Thermoanaerobacter sp. X513] Length = 236 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G + + F AV+ FQ +GL +G+VD T A Sbjct: 42 GNTGSDVAKVQARLKDWGYY--TGAVDGFFGVRTWLAVRKFQAYNGLRVTGIVDDDTKVA 99 Query: 165 MNVPVDL 171 + Sbjct: 100 LGFTTTA 106 >gi|320334702|ref|YP_004171413.1| peptidoglycan-binding domain 1 protein [Deinococcus maricopensis DSM 21211] gi|319755991|gb|ADV67748.1| Peptidoglycan-binding domain 1 protein [Deinococcus maricopensis DSM 21211] Length = 258 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + ++ L+ RL+ +D KG + E+ + FQ +GL +G+VD++T Sbjct: 173 PRMNGEDIRALQNRLMDVSRIDRGKGGDGWYGPMTEANIIAFQSANGLPANGVVDAATWR 232 Query: 164 AM 165 A+ Sbjct: 233 AL 234 >gi|218461346|ref|ZP_03501437.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium etli Kim 5] Length = 204 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 43/182 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E ++V+ PA V +R V VGR Sbjct: 42 QVPIDKIKPELRRQEVAYETAYAAGTIVVDTPARRAYYVLGNGRAMRYGVGVGREG-LAF 100 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + + R P W ++ +++ Sbjct: 101 AGGAYVGRKAEWPSWTPTENMQRRE----------------------------------- 125 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + + + +H T +P +SGC+R+ Sbjct: 126 -ERYRRLAGGMPGGPNNPLGARAMYLYRGGNDTHFRIHGTNQPESIG---LAMSSGCIRM 181 Query: 347 RN 348 N Sbjct: 182 MN 183 >gi|254705317|ref|ZP_05167145.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|261756029|ref|ZP_05999738.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|261745782|gb|EEY33708.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] Length = 206 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 6/157 (3%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y V+ ++ A+ + K+ + V + ++ Y ++ + Sbjct: 33 YSSVSDAGYAIPAIPSEKIPAQYRRQVVKYATDEKPGTIIVDAREKFLYLIMSEGKAVRY 92 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + R+ ++ + M E + PE + DPG N + + + Sbjct: 93 GIGVGRRGFEWSGTARVAMKREWPTWTPPSAMIKRQPELAKYRNGMDPGLRNPLGARALY 152 Query: 315 FYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y++ +H TPE + +SGC+R+ N Sbjct: 153 LYNKGGDTGYRLHGTPEWWSIGKAM---SSGCIRLMN 186 >gi|27377732|ref|NP_769261.1| hypothetical protein bll2621 [Bradyrhizobium japonicum USDA 110] gi|27350877|dbj|BAC47886.1| bll2621 [Bradyrhizobium japonicum USDA 110] Length = 228 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 59/218 (27%) Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL------------ 197 GL SG + ++ EA + + + +R + + R ++ Sbjct: 14 GLMLSGCMQATHFEATDTKAFKPKDKELLAKVRYENTPVAEPFRRAIVEYHRKESPGSIV 73 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 V+ L V +G +R + VG +++ + P W I + Sbjct: 74 VDSDNHYLYYVLDGGKAIRYGITVGEEA-MAWSGIAKVGSMTEWPAWHPTPGEISR---- 128 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 P Y+ PG N M S + YS Sbjct: 129 --LGVPTYVA----------------------------------PGPDNPMGSRAMYLYS 152 Query: 318 --RNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 ++ + +H T +P +SGC+R+ N + Sbjct: 153 GGKDTLFRIHGTNQPEYIGAS---ISSGCIRLTNEDAI 187 >gi|317489796|ref|ZP_07948295.1| spore cortex-lytic enzyme [Eggerthella sp. 1_3_56FAA] gi|325830265|ref|ZP_08163722.1| peptidoglycan binding domain protein [Eggerthella sp. HGA1] gi|316911142|gb|EFV32752.1| spore cortex-lytic enzyme [Eggerthella sp. 1_3_56FAA] gi|325487732|gb|EGC90170.1| peptidoglycan binding domain protein [Eggerthella sp. HGA1] Length = 301 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 12/83 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ V L+ L G F A+ E A++ Sbjct: 66 WAALVDASFTLGDRTLYLRMPHFHGHDVLELQHALGALGF--ACGATDGIFGAFTELALR 123 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 FQ+ GL G+ + T A+ Sbjct: 124 KFQLNLGLPSDGIAGAYTYAAIR 146 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + ++ +V+ +++RL+ G LDP + AF AV+ F GL + V Sbjct: 5 ETIKRHDTGPAVEDVQQRLVTIGLLDP-ADVDGAFGDTTAEAVQAFCGGAGLPLTDEVTE 63 Query: 160 STLEAM 165 A+ Sbjct: 64 KVWAAL 69 >gi|257790349|ref|YP_003180955.1| Peptidoglycan-binding domain 1 protein [Eggerthella lenta DSM 2243] gi|257474246|gb|ACV54566.1| Peptidoglycan-binding domain 1 protein [Eggerthella lenta DSM 2243] Length = 330 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 12/83 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ V L+ L G F A+ E A++ Sbjct: 95 WAALVDASFTLGDRTLYLRMPHFHGHDVLELQHALGALGF--ACGATDGIFGAFTELALR 152 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 FQ+ GL G+ + T A+ Sbjct: 153 KFQLNLGLPSDGIAGAYTYAAIR 175 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + ++ +V+ +++RL+ G LDP + AF AV+ F GL + V Sbjct: 34 ETIKRHDTGPAVEDVQQRLVTIGLLDP-ADVDGAFGDTTAEAVQAFCGGAGLPLTDEVTE 92 Query: 160 STLEAM 165 A+ Sbjct: 93 KVWAAL 98 >gi|153930828|ref|YP_001385112.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|153935450|ref|YP_001388581.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] gi|152926872|gb|ABS32372.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|152931364|gb|ABS36863.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] Length = 236 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 98 PIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G +V+ ++ +L G G+ F AVK FQ L G Sbjct: 164 PGYLLKYNPGRFDANVKLIQSKLQNIGYSVGKYGVDGYFGDGTLLAVKCFQRDCNLMIDG 223 Query: 156 MVDSSTLEAM 165 ++ T + + Sbjct: 224 IIGVDTWKRI 233 >gi|297545506|ref|YP_003677808.1| spore cortex-lytic enzyme [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843281|gb|ADH61797.1| spore cortex-lytic enzyme [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 236 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G + F AV+ FQ +GL+ +G+VD T A Sbjct: 42 GNTGSDVAKVQARLKDWGYY--QGAVDGFFGVRTWLAVRKFQAYNGLNVTGIVDDDTKVA 99 Query: 165 MNVPVDL 171 + Sbjct: 100 LGFTTTA 106 >gi|78044166|ref|YP_359174.1| putative peptidoglycan-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996281|gb|ABB15180.1| putative peptidoglycan-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 214 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 E+P R L +G+ V L+E L + G + F +E AV F+ +GL Sbjct: 142 QEIPWRTLVVGSKGSDVLILQELLKLKGYYS--GPIDGIFGRKMEKAVVKFRADYGLPSD 199 Query: 155 GMVDSSTLEAMNV 167 ++ + + + Sbjct: 200 NRINMEMYKLLRI 212 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 48/141 (34%), Gaps = 19/141 (13%) Query: 231 LHSRINRIMFNPYWVIPRSIIQKD---MMALLRQDPQYLKDNNIHMIDEK---GKEVFVE 284 + ++ ++F ++ P + + + ++ R YL N + G Sbjct: 1 MVKKLFFLVFLMIFLTPLTGLANEKNIIVIETRTRLLYLFRENKLVKKYPVALGDLKTPT 60 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGC 343 + + + S + Y +H T +P + + + GC Sbjct: 61 PIGCFKITFMRKNW------GSGFGSRFLGLNVPWGMYGIHGTNKPGSIGS---YASHGC 111 Query: 344 VRV--RNIIDLDVWL-LKDTP 361 +R+ R++ +L + L+D Sbjct: 112 IRMLNRHVEELYEKVHLQDQV 132 >gi|331090953|ref|ZP_08339795.1| hypothetical protein HMPREF9477_00438 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405175|gb|EGG84711.1| hypothetical protein HMPREF9477_00438 [Lachnospiraceae bacterium 2_1_46FAA] Length = 421 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++L+E+L +I+G + +AVK FQ GL + Sbjct: 337 PGYDLENGSSGDKVRQLQEQLNVIAGAYPAIPKITADGIYGPATAAAVKKFQSIFGLPDT 396 Query: 155 GMVDSSTLEAMNV 167 G+ D T ++ Sbjct: 397 GITDYPTWYKISQ 409 >gi|291558332|emb|CBL35449.1| Cell Wall Hydrolase./Putative peptidoglycan binding domain [Eubacterium siraeum V10Sc8a] Length = 219 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 5/94 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V+ +++ L G + ++ F E A+ FQ + GL +G+ D +TL+ Sbjct: 34 GSQGSEVEAVQQTLKDRGLF--NAEVTGYFGEKTEEAILRFQKQQGLAQTGVADEATLKR 91 Query: 165 MNVPVD--LRIRQLQVNLMRIKKLLEQKMGLRYV 196 + + + +NL+ + + + G Y+ Sbjct: 92 LGISIGSIPPATTANINLL-ARIISAEGRGEPYI 124 >gi|289579365|ref|YP_003477992.1| spore cortex-lytic enzyme [Thermoanaerobacter italicus Ab9] gi|289529078|gb|ADD03430.1| spore cortex-lytic enzyme [Thermoanaerobacter italicus Ab9] Length = 236 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G + F AV+ FQ +GL+ +G+VD T A Sbjct: 42 GNTGSDVAKVQARLKDWGYY--RGAVDGFFGVRTWLAVRKFQAYNGLNVTGIVDDDTKVA 99 Query: 165 MNVPVDL 171 + Sbjct: 100 LGFTTTA 106 >gi|111219606|ref|YP_710400.1| hypothetical protein FRAAL0103 [Frankia alni ACN14a] gi|111147138|emb|CAJ58785.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a] Length = 255 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 25/118 (21%) Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR-------QDPGKINAMASTKIEFYSRN 319 + +++ + GK++ E V + + P R + + Sbjct: 139 RGHHLLQVFSDGKQIAQEPVAIGTTDTPTPGGRFYLMELLRPRNPNGPYGPYAFGL-NGF 197 Query: 320 N------------TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 + +H T EP + + GC+R+ N I L + TP Sbjct: 198 STSLSSFDGRKPVIGLHGTNEPKMIGKD---VSHGCIRLSNDAITRLAQTVPLGTPVD 252 >gi|319651370|ref|ZP_08005499.1| sporulation specific N-acetylmuramoyl-L-alanine amidase [Bacillus sp. 2_A_57_CT2] gi|317396901|gb|EFV77610.1| sporulation specific N-acetylmuramoyl-L-alanine amidase [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G V L+ RL G + + F A++ FQ GL G+ T Sbjct: 41 GAVGNDVIELQSRLQYLGFY--NGKIDGVFGWGTYWALRNFQYEFGLPIDGLAGQET 95 >gi|304393323|ref|ZP_07375251.1| ErfK/YbiS/YcfS/YnhG [Ahrensia sp. R2A130] gi|303294330|gb|EFL88702.1| ErfK/YbiS/YcfS/YnhG [Ahrensia sp. R2A130] Length = 167 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 46/180 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + ++ + +LV+ L L TV VGR +Q +RI + P Sbjct: 26 RSVVAADVPRGTILVDTSQRRLYLGLGRGQALSYTVAVGRAGKQ-WTGTTRIRSKRWKPA 84 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W II++ +P + V Sbjct: 85 WSPTAEIIRE--------NPGI-------------QRVIPSMA----------------- 106 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + +H T P + GC+R+RN D+ L W Sbjct: 107 ANNPMGVAALVLGKKQ-YAIHGTNRPSKIGK---AVSYGCIRMRNA-DIAD--LYKRVGW 159 >gi|332671624|ref|YP_004454632.1| peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] gi|332340662|gb|AEE47245.1| Peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] Length = 635 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 6/128 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ ++RL G P F ++A +Q HGL P ++ T Sbjct: 81 LRRGHTGEDVRHAQDRLNAHG-AAPPLVTDGIFGPLTQAATTQYQRTHGLSPDAVIGPRT 139 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ P D + + + + + A ++ +G V Sbjct: 140 SASLEGPTD-----VGGSSGQAAPRPTGPAPGAVLRYDTSAYTITPPSSGTTLATLRAAV 194 Query: 222 GRVDRQTP 229 TP Sbjct: 195 QAAQGATP 202 >gi|75674817|ref|YP_317238.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] gi|74419687|gb|ABA03886.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] Length = 221 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%) Query: 294 PNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN-- 348 R G N + + + S++ + +H T +P +SGC+R+ N Sbjct: 130 GGLPSRVAGGPDNPLGARALYLYQGSKDTLFRIHGTNQPEYIGTS---ISSGCIRMTNED 186 Query: 349 IIDLDVWLLKDT 360 IDL + T Sbjct: 187 AIDLYDRVKVGT 198 >gi|75676754|ref|YP_319175.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] gi|74421624|gb|ABA05823.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] Length = 283 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 41/144 (28%), Gaps = 44/144 (30%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V+ G LR V VG+ I+ P W P ++++ Sbjct: 165 LYLVQGGGKALRYGVGVGKPG-FLWAGTKTISAKREWPAWTPPAEMLKRR---------- 213 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 P+ G N + + + S +H Sbjct: 214 -----------------------------PDLPRHMVGGPQNPLGARAMYLGSS-LYRIH 243 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 + EP +SGC+R+RN Sbjct: 244 GSNEPWTIGTN---VSSGCIRMRN 264 >gi|167036615|ref|YP_001664193.1| cell wall hydrolase SleB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115042|ref|YP_004185201.1| spore cortex-lytic enzyme [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855449|gb|ABY93857.1| cell wall hydrolase, SleB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928133|gb|ADV78818.1| spore cortex-lytic enzyme [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 236 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G + + F AV+ FQ +GL +G+VD T A Sbjct: 42 GNTGSDVAKVQARLKDWGYY--TGAVDGFFGVRTWLAVRKFQAYNGLRVTGIVDDDTKVA 99 Query: 165 MNVPVDL 171 + Sbjct: 100 LGFTTTA 106 >gi|300118714|ref|ZP_07056440.1| spore cortex-lytic enzyme [Bacillus cereus SJ1] gi|298723871|gb|EFI64587.1| spore cortex-lytic enzyme [Bacillus cereus SJ1] Length = 157 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 32 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 89 Query: 156 MVDSST 161 + + T Sbjct: 90 LAGAKT 95 >gi|228965691|ref|ZP_04126772.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar sotto str. T04001] gi|228794099|gb|EEM41621.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar sotto str. T04001] Length = 102 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G S V L+ RL +G + + F A++ FQ + GL G Sbjct: 12 AFSNQVIQRGASGEDVIELQSRLKYNGFY--TGKVDGVFGWGTYWALRNFQEKFGLPVDG 69 Query: 156 MVDSST 161 + + T Sbjct: 70 LAGAKT 75 >gi|75677072|ref|YP_319493.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] gi|74421942|gb|ABA06141.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] Length = 196 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 28/179 (15%), Positives = 45/179 (25%), Gaps = 46/179 (25%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 QL + L +++ L ++ +R + VGR Q Sbjct: 43 QLDPEYRKQVVLYRTTEPPGTIIIQTAERHLYLIQGNGRAIRYGIGVGRAGFQ-WQGILN 101 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I R P W P +I + P Sbjct: 102 ITRKAEWPDWTPPPEMIARQ---------------------------------------P 122 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 G N M + + Y +H T +P +SGC R+ N + Sbjct: 123 YLPRFMAGGPGNPMGARAMYL--GTTVYRIHGTNQPDTIGT---AISSGCFRLVNADVI 176 >gi|295314766|gb|ADF97533.1| PlyM8 [uncultured phage] Length = 357 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ + L L ++ +V+ L+ L +G L + F E+AVK FQ Sbjct: 205 AAKPTPSTVKRDYLLLDDTGAAVKTLQSELKQAGFL---LSVGGIFGKGTETAVKAFQRA 261 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ + + +N Sbjct: 262 NGLAVDGVFGTGSQAKLNA 280 >gi|291451493|ref|ZP_06590883.1| peptidoglycan-binding domain 1 [Streptomyces albus J1074] gi|291354442|gb|EFE81344.1| peptidoglycan-binding domain 1 [Streptomyces albus J1074] Length = 319 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP + G V + + G + F ++AV+ FQ GL+ Sbjct: 183 TWPTV-----RSGARGPDVHAAQHLVSHHGF---ATDPDGIFGPATQTAVQEFQTSVGLE 234 Query: 153 PSGMVDSSTLEAMNVPVD 170 +G+V++ T + V V Sbjct: 235 ATGVVNAQTWPRLVVTVR 252 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 87 DILSRGGWPE--LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 +++ WP + +R G+ +V+ + + + G + F + A + Sbjct: 237 GVVNAQTWPRLVVTVRSGDSGDRGEAVRAAQRQFVKHG---HPITVDGVFGPRTDEAARA 293 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 Q L G+V T A+ Sbjct: 294 VQRAAKLTVDGVVGQQTWRAL 314 >gi|239979629|ref|ZP_04702153.1| putative bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; Muramoylpentapeptide [Streptomyces albus J1074] Length = 318 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP + G V + + G + F ++AV+ FQ GL+ Sbjct: 182 TWPTV-----RSGARGPDVHAAQHLVSHHGF---ATDPDGIFGPATQTAVQEFQTSVGLE 233 Query: 153 PSGMVDSSTLEAMNVPVD 170 +G+V++ T + V V Sbjct: 234 ATGVVNAQTWPRLVVTVR 251 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 87 DILSRGGWPE--LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 +++ WP + +R G+ +V+ + + + G + F + A + Sbjct: 236 GVVNAQTWPRLVVTVRSGDSGDRGEAVRAAQRQFVKHG---HPITVDGVFGPRTDEAARA 292 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 Q L G+V T A+ Sbjct: 293 VQRAAKLTVDGVVGQQTWRAL 313 >gi|158425962|ref|YP_001527254.1| hypothetical protein AZC_4338 [Azorhizobium caulinodans ORS 571] gi|158332851|dbj|BAF90336.1| uncharacterized protein [Azorhizobium caulinodans ORS 571] Length = 410 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 47/179 (26%), Gaps = 46/179 (25%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + R ++++ P L V G +R + VGR D T Sbjct: 246 DPSEPVPDRFRRQTVDYVTSQPAGTIVIDTPNTYLYYVLGGGKAIRYGIGVGR-DGFTWA 304 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 +I R W P +IQ+ Sbjct: 305 GTEKITRKAEWADWRPPAEMIQRQ------------------------------------ 328 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 P G N + + + Y +H T EP F +SGC R+ N Sbjct: 329 ---PYLPRFMAGGPGNPLGARTLYL--GGTVYRIHGTNEPQTIGK---FVSSGCFRMLN 379 >gi|163852298|ref|YP_001640341.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163663903|gb|ABY31270.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 240 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 57/199 (28%), Gaps = 48/199 (24%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +T A + R + R + ++++ A L ++ +R Sbjct: 77 GPATRPAPEEGLIAR--TVDPRFARQVVAYDGPGRAGQIVIDTNAKYLYLIQPAGQAIRY 134 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + VGR I+ P W P ++++ Sbjct: 135 GIGVGRPGFV-WTGAKTISAKREWPDWTPPAEMLRRR----------------------- 170 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 P+ + G N + + + + +H T EP Sbjct: 171 ----------------PDLPRHMEGGPENPLGARAMYLGTS-LYRIHGTNEPHTIGQN-- 211 Query: 338 FETSGCVRV--RNIIDLDV 354 +SGC+R+ ++IDL Sbjct: 212 -VSSGCIRMMNEDVIDLYE 229 >gi|311067736|ref|YP_003972659.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus atrophaeus 1942] gi|310868253|gb|ADP31728.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus atrophaeus 1942] Length = 319 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + V +++ L + G+ + A +AVK FQ+ Sbjct: 238 PLPSGVIKLTSPLTKGTKVIQVQRALAALYFYPDKGAKNNGVDGFYGAKTANAVKRFQLM 297 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL G+ T M Sbjct: 298 NGLTADGIYGPKTKARM 314 >gi|303233179|ref|ZP_07319852.1| peptidoglycan binding domain protein [Atopobium vaginae PB189-T1-4] gi|302480764|gb|EFL43851.1| peptidoglycan binding domain protein [Atopobium vaginae PB189-T1-4] Length = 301 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +P+ G S +V+ ++ RL G +DP + S + + AV F++ L+ S VD Sbjct: 2 KPIQKGASGSAVEDIQNRLSRLGYVIDPQELQSQTYGSSTARAVASFRLAQQLELSEDVD 61 Query: 159 SSTLEAM 165 T A+ Sbjct: 62 QETWNAL 68 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 32/157 (20%) Query: 30 PIHASVLDEIINESYHSI---------VNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 PI + + + + + + + + S + + Sbjct: 3 PIQKGASGSAVEDIQNRLSRLGYVIDPQELQSQTYGSSTARAVAS----------FRLAQ 52 Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGL 130 + + + + W L LG+ V +L+ L I G Sbjct: 53 QLE-LSEDVDQETWNALVDESYVLGDRTLYLRLPNFHGHDVYQLQTILNILGF--SCGDA 109 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + A+ E+AVK FQ G GM T +A+ Sbjct: 110 DSYYGAHTEAAVKEFQESQGGLADGMAFQDTFDALER 146 >gi|153010320|ref|YP_001371534.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151562208|gb|ABS15705.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 249 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 42/197 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R + V+V+ P L V +R + VGR D Sbjct: 74 PAVDTSKVDPKFWRQEVDYPTDEVRGTVIVDTPNKYLYHVLGNGRAMRYGIGVGR-DGFA 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 ++I P W P ++ + +P + + + Sbjct: 133 WAGRAKIAYKRQWPRWTPPDEMVAR----QPALEPYSIANGGM----------------- 171 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 PG N + + + + R+ Y +H +PE +SGC+R Sbjct: 172 ------------PPGIKNPLGARAMYIHKDGRDTLYRIHGSPEAWSIGK---AVSSGCIR 216 Query: 346 V--RNIIDLDVWLLKDT 360 + +++IDL + + Sbjct: 217 MLNQDVIDLYNNVRDGS 233 >gi|328544690|ref|YP_004304799.1| ErfK/YbiS/YcfS/YnhG family [polymorphum gilvum SL003B-26A1] gi|326414432|gb|ADZ71495.1| ErfK/YbiS/YcfS/YnhG family [Polymorphum gilvum SL003B-26A1] Length = 231 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 20/119 (16%) Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP------------GKINA 307 R+ +Y G V + +W PP + + P G N Sbjct: 104 RKALRYGIGVGKAGFAWSGDAVIRMKQEWPVWRPPKEMIARRPELARYGDDGMEGGPKNP 163 Query: 308 MASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + + + + + Y +H T EP +SGC+R+ +++IDL + +T Sbjct: 164 LGARALYLWQGNVDTLYRIHGTNEPSSIGKN---VSSGCIRMWHQDVIDLYARVPMNTK 219 >gi|86741674|ref|YP_482074.1| peptidoglycan binding domain-containing protein [Frankia sp. CcI3] gi|86568536|gb|ABD12345.1| Peptidoglycan-binding domain 1 [Frankia sp. CcI3] Length = 249 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V ++++RL G + F VK FQ++HGL G+V T + + Sbjct: 195 DVHQIQKRLASLGY---PISVDGKFGYQTNHMVKDFQLKHGLVVDGIVGPQTRAKLGI 249 >gi|300856612|ref|YP_003781596.1| hypothetical protein CLJU_c34530 [Clostridium ljungdahlii DSM 13528] gi|300436727|gb|ADK16494.1| conserved protein [Clostridium ljungdahlii DSM 13528] Length = 220 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 11/132 (8%) Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 +I+ I+ + SII+ + + +++ID+ + + + Sbjct: 2 RKISFILLLILFFPNASIIRAKESKKNLGILVDVTEEMLYLIDKDKNTIIRKYPVASGKS 61 Query: 293 PPNFI-----FRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV 346 + I +H T +P + GC+R+ Sbjct: 62 ETPSPIGTWKVVSMASWSGGFGTRWIGLNVPWGKFGIHGTNKPHSIGGE---ASHGCIRM 118 Query: 347 RN--IIDLDVWL 356 N + DL ++ Sbjct: 119 LNSDVEDLYNYV 130 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%) Query: 84 FYQDILSRGGWPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 +Y I++ G P P L G V ++ RL +G S + + ++ Sbjct: 131 YYGMIVAVYGGPYGPFGKELRTLTPGVRGADVYEIQRRLKDAGYYCGS--MDGIYGESMK 188 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V F+ + L S VD + + + + Sbjct: 189 KCVMKFRRDNKLPESHDVDKNFYKKLRI 216 >gi|293402331|ref|ZP_06646468.1| spore cortex-lytic enzyme SleC [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304178|gb|EFE45430.1| spore cortex-lytic enzyme SleC [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 356 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 4/77 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL--IISGD--LDPSKGLSVAFDAYVESAVKLFQMRHG 150 P P L G+ +V ++E L I + F E AV+ FQ + Sbjct: 175 PSYPGYALRRGSQGQNVFIIQELLNGIAVNYPNIPLIYPPDGIFGEVTERAVRTFQQQFN 234 Query: 151 LDPSGMVDSSTLEAMNV 167 L G+V +T ++ Sbjct: 235 LSVDGIVGQTTWNQISR 251 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQM 147 G W R L G+ + VQ+L+ L I + P + F A +E +V+ FQ Sbjct: 273 TGLW---TGRVLRRGDVGIEVQQLQYFLSVIAQTYTNIPPVDIDSRFGAGLERSVRAFQR 329 Query: 148 RHGLDPSGMVDSSTLE 163 GL G+V T Sbjct: 330 EFGLAQDGLVGQVTWN 345 >gi|227823922|ref|YP_002827895.1| conserved hypothetical protein contains ErfK/YbiS/YcfS/YnhG domain protein [Sinorhizobium fredii NGR234] gi|227342924|gb|ACP27142.1| conserved hypothetical protein contains ErfK/YbiS/YcfS/YnhG domain protein [Sinorhizobium fredii NGR234] Length = 224 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 43/184 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I +L R + + ++VN P L V G +R + VG+ Sbjct: 58 PAIPINRLDQRFHRQIVNYDTRERPGTIVVNTPNRFLYYVLPGGKAVRYGIGVGKAGFA- 116 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P K+M + +Y+++ Sbjct: 117 WEGEAYVAWKQEWPTWHPP-----KEMAERKPEVAKYVEEG------------------- 152 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCV 344 PG N + + + ++ +H TPE +SGC+ Sbjct: 153 -----------MGPGITNPLGARALYLFNEEGRDTLFRLHGTPEWSSIGT---AASSGCI 198 Query: 345 RVRN 348 R+ N Sbjct: 199 RLMN 202 >gi|149176367|ref|ZP_01854981.1| hypothetical protein PM8797T_07589 [Planctomyces maris DSM 8797] gi|148844719|gb|EDL59068.1| hypothetical protein PM8797T_07589 [Planctomyces maris DSM 8797] Length = 426 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 44/158 (27%), Gaps = 54/158 (34%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G V++ +L +G R ++ G+ D TP + + +P + P + Sbjct: 303 KGPFNAFVDLSDFTLTIHAHGYFVRRYSIGTGK-DHSTPTGKFLVKEKLVDPTYYGPDGV 361 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 I D N + Sbjct: 362 IAND------------------------------------------------DPTNPLGE 373 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 I+ ++ +H T +P E+ GCVR+ N Sbjct: 374 RWIDI--GDSYGIHGTIDPASIGK---AESKGCVRMLN 406 >gi|294811200|ref|ZP_06769843.1| Putative peptidoglycan binding protein [Streptomyces clavuligerus ATCC 27064] gi|294323799|gb|EFG05442.1| Putative peptidoglycan binding protein [Streptomyces clavuligerus ATCC 27064] Length = 332 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R + G+ V +L L+ G + +D E+AVK +Q + Sbjct: 85 PVPSFREMKPGDRGSDVLQLERNLVALGY-GGGLYVDPRYDRATEAAVKRWQKSLNRVVT 143 Query: 155 GMVDSSTL 162 G V + Sbjct: 144 GRVGEGHV 151 >gi|268609046|ref|ZP_06142773.1| spore cortex-lytic enzyme, pre-pro-form [Ruminococcus flavefaciens FD-1] Length = 463 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 4/94 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGL---SVAFDAYVESAVKLFQMRHG 150 P L +G++ V+ L+ L ISG+ + FD +AV+ FQ G Sbjct: 176 PSFGGIDLAVGSAGNDVKSLQVFLNRISGNYPAIPKIPQADGIFDEATAAAVRTFQQVFG 235 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 L+ +G+V++ST + ++N ++ Sbjct: 236 LETTGIVNASTWYRITYIYTSVKHIAELNSEGVR 269 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 11/145 (7%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDP-- 126 S + IA+ ++I + L +G S+ V L+ L + G + Sbjct: 255 TSVKHIAELNSEGVRLEEI------SPVFTEDLKIGMQSIEVSVLQYYLAVIGAYYEAVT 308 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 ++ F E +VK FQ GL +G VD +T + + + Sbjct: 309 PVEITGYFGEKTELSVKSFQRVFGLPQTGEVDRATRNDLYRAYQGIAEAVPPQYTAVALY 368 Query: 187 LEQKM--GLRYVLVNIPAASLEAVE 209 + G+ V I L + Sbjct: 369 PGTVLREGVSGSSVRIIQEYLTYIN 393 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG--DLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S SV+ ++E L + PS + F + +V FQ + G+D + Sbjct: 369 PGTVLREGVSGSSVRIIQEYLTYINRSYPNIPSVSNTGYFGPLTKQSVMAFQRQFGIDQT 428 Query: 155 GMVDSSTLEAMN 166 G+V + T + + Sbjct: 429 GIVGAVTWDKIA 440 >gi|166030996|ref|ZP_02233825.1| hypothetical protein DORFOR_00677 [Dorea formicigenerans ATCC 27755] gi|166029263|gb|EDR48020.1| hypothetical protein DORFOR_00677 [Dorea formicigenerans ATCC 27755] Length = 419 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ V++++E+L++ D P+ F E+AV+ FQ+ GL + Sbjct: 335 PGYDLSIGSTGDKVRQMQEQLLVISDAYPAIPKIDADGIFGPATEAAVRKFQLIFGLPVT 394 Query: 155 GMVDSSTLEAMN 166 G+VD T ++ Sbjct: 395 GIVDYKTWYKIS 406 >gi|308174085|ref|YP_003920790.1| spore cortex-lytic enzyme [Bacillus amyloliquefaciens DSM 7] gi|307606949|emb|CBI43320.1| spore cortex-lytic enzyme [Bacillus amyloliquefaciens DSM 7] gi|328552788|gb|AEB23280.1| spore cortex-lytic enzyme [Bacillus amyloliquefaciens TA208] gi|328912414|gb|AEB64010.1| spore cortex-lytic enzyme [Bacillus amyloliquefaciens LL3] Length = 289 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PS 154 + + G + V L+ RL +G + + + AV+ FQ + G+ Sbjct: 28 AFSNQVIQRGATGDDVIELQARLQYNGFY--NGKIDGVYGWTTYWAVRNFQEKFGMKAVD 85 Query: 155 GMVDSST 161 G+V + T Sbjct: 86 GLVGAKT 92 >gi|158318949|ref|YP_001511457.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EAN1pec] gi|158114354|gb|ABW16551.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EAN1pec] Length = 295 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 18/76 (23%), Gaps = 16/76 (21%) Query: 301 DPGKINAMASTKIEFY------SRNN-----TYMHDTPEPILFNNVVRFETSGCVRVRN- 348 +H T EP R + GC+R+ N Sbjct: 220 PSNPGGPYGPYAFGLSGFSTSLDSFGGRDPVIGIHGTNEPGSIG---RDVSHGCIRLSND 276 Query: 349 -IIDLDVWLLKDTPTW 363 I L + TP Sbjct: 277 AITRLAQTVPLGTPVE 292 >gi|299134725|ref|ZP_07027917.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298590535|gb|EFI50738.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 224 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 287 DWNSPEPP----NFIFRQDPGKINAMASTKIEFYS--RNNTY-MHDTPEPILFNNVVRFE 339 DW+ + G N M S I YS ++ + +H T +P Sbjct: 118 DWHPTKGEIERLGVPTFVKGGPDNPMGSRAIYLYSGGKDTLFRIHGTNQPEYIGAS---I 174 Query: 340 TSGCVRVRN 348 +SGC+R+ N Sbjct: 175 SSGCIRMTN 183 >gi|296447403|ref|ZP_06889329.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296255106|gb|EFH02207.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 193 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + V+V+ L V +R V VGR + I+ Sbjct: 51 RETVAFTGRYAPGTVIVSTNERRLYYVLGNSQAIRYGVGVGRPGFE-WSGTRYISNKREW 109 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 110 PDWTPPSQMLRRR---------------------------------------PDLPRHMA 130 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP +SGC+R+ N Sbjct: 131 GGVDNPLGARAMYLGGS-LYRIHGSNEPETIGQ---AVSSGCIRMTN 173 >gi|254713289|ref|ZP_05175100.1| ErfK/YbiS/YcfS/YnhG [Brucella ceti M644/93/1] gi|254716358|ref|ZP_05178169.1| ErfK/YbiS/YcfS/YnhG [Brucella ceti M13/05/1] gi|261218141|ref|ZP_05932422.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261321012|ref|ZP_05960209.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|260923230|gb|EEX89798.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261293702|gb|EEX97198.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] Length = 186 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 6/140 (4%) Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 K+ + V + ++ Y ++P + + + R+ ++ + Sbjct: 30 KIPAQYRRQVVKYATDEKPGTIIVDTREKFLYLIMPEGKAVRYGIGVGRRGFEWSGTARV 89 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPE 328 M E PE + DPG N + + + Y++ +H TPE Sbjct: 90 AMKREWPTWTPPSATIKRQPELAKYRNGMDPGLRNPLGARALYLYNKGGDTGYRLHGTPE 149 Query: 329 PILFNNVVRFETSGCVRVRN 348 + +SGC+R+ N Sbjct: 150 WWSIGKAM---SSGCIRLMN 166 >gi|239833510|ref|ZP_04681838.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] gi|239821573|gb|EEQ93142.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] Length = 249 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 42/197 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R + V+V+ P L V +R + VGR D Sbjct: 74 PAVDTSKVDPKFWRQEVDYPTDEVKGTVIVDTPNKYLYHVLGNGRAMRYGIGVGR-DGFA 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 ++I P W P ++ + +P + + + Sbjct: 133 WAGRAKIAYKRQWPRWTPPDEMVAR----QPALEPYSIANGGM----------------- 171 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 PG N + + + + R+ Y +H +PE +SGC+R Sbjct: 172 ------------PPGIKNPLGARAMYIHKDGRDTLYRIHGSPEAWSIGK---AVSSGCIR 216 Query: 346 V--RNIIDLDVWLLKDT 360 + +++IDL + + Sbjct: 217 MLNQDVIDLYNNVRDGS 233 >gi|187776901|ref|ZP_02993374.1| hypothetical protein CLOSPO_00440 [Clostridium sporogenes ATCC 15579] gi|187775560|gb|EDU39362.1| hypothetical protein CLOSPO_00440 [Clostridium sporogenes ATCC 15579] Length = 231 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 11/74 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + ++ + +H T P Sbjct: 68 ATGKSSTPSPIGTWKIINKGTW-------GSSFGGRWMGLNVPWGKYGIHGTDAPHSIGW 120 Query: 335 VVRFETSGCVRVRN 348 + GC+R++N Sbjct: 121 NS---SHGCIRMKN 131 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RP+ G V +++ L + ++S + FQ + + S V+S Sbjct: 162 RPIEPGMRGSDVYEVQKLLKEKKYYSGEP--DGIYGENMKSVIHKFQKDNNIPLSNTVNS 219 Query: 160 STLEAMNV 167 S + + V Sbjct: 220 SFYKKLGV 227 >gi|115522564|ref|YP_779475.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] gi|115516511|gb|ABJ04495.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 196 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 51/191 (26%), Gaps = 48/191 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R ++V L V+ G LR + VGR Q +I R Sbjct: 50 RQMVFFRSNEPPGTIVVQTSERYLYLVQGGGRALRYGIGVGREGFQ-WQGLLKIARKAEW 108 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P WV P +IQ+ P Sbjct: 109 PDWVPPPEMIQRQ---------------------------------------PYLPRFMA 129 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLK 358 G N + + + S Y +H T P +SGC R+ N DL + Sbjct: 130 GGPGNPLGARAMYLGS--TVYRIHGTNRPDTIGT---AISSGCFRLVNADVSDLYDRVPV 184 Query: 359 DTPTWSRYHIE 369 T R E Sbjct: 185 GTKVVVRQRPE 195 >gi|241258873|ref|YP_002978757.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863343|gb|ACS61006.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 203 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 9/141 (6%) Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + I + P +A+ R+ Q+ I + Sbjct: 65 QPPTGRAKGTIEIVTSEHTLIYTTPWGEQFAYPIAVGREGKQWYGSTRIVSKRAHPEWRP 124 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 + + P PG N + + I +H T +P +SG Sbjct: 125 TASM---RQKNPRLPAVVKPGPANPLGTRAIYLADG-LLRIHGTNDPSSIGTN---ASSG 177 Query: 343 CVRV--RNIIDLDVWLLKDTP 361 C R+ +++ +L + T Sbjct: 178 CFRMYRQDVEELYEIVQPGTK 198 >gi|164519578|pdb|3BKH|A Chain A, Crystal Structure Of The Bacteriophage Phikz Lytic Transglycosylase, Gp144 gi|164519579|pdb|3BKV|A Chain A, X-Ray Structure Of The Bacteriophage Phikz Lytic Transglycosylase, Gp144, In Complex With Chitotetraose, (Nag)4 Length = 268 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ V +L+ L + G F + V FQ + LD G+V Sbjct: 10 KVLRKGDRGDEVCQLQTLLNLCGY--DVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGK 67 Query: 160 STLEAMNVPVDLRI 173 +T + I Sbjct: 68 NTWAELFSKYSPPI 81 >gi|29135080|ref|NP_803710.1| endolysin [Pseudomonas phage phiKZ] gi|18996609|gb|AAL83045.1|AF399011_144 PHIKZ144 [Pseudomonas phage phiKZ] Length = 260 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ V +L+ L + G F + V FQ + LD G+V Sbjct: 2 KVLRKGDRGDEVCQLQTLLNLCGY--DVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGK 59 Query: 160 STLEAMNVPVDLRI 173 +T + I Sbjct: 60 NTWAELFSKYSPPI 73 >gi|163736843|ref|ZP_02144261.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Phaeobacter gallaeciensis BS107] gi|161389447|gb|EDQ13798.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Phaeobacter gallaeciensis BS107] Length = 183 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 41/165 (24%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 + L V + R V VGR + + I P W +I++D Sbjct: 51 SYYLYYVTEPRRARRYGVGVGRAGLE-FTGTAVIQAKKEWPTWRPTPEMIERD------- 102 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN 320 + + + Q G N + + + F + + Sbjct: 103 -------------------------PRSYTRFVDNKYIQPGGTDNPLGARALYLFQNGID 137 Query: 321 TY--MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 TY +H T +P + ++GC+R+ N I+DL + T Sbjct: 138 TYFRIHGTNQPQTIGHS---VSNGCIRMTNEHIVDLYERVPLGTV 179 >gi|291560617|emb|CBL39417.1| Putative peptidoglycan-binding domain-containing protein [butyrate-producing bacterium SSC/2] Length = 128 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERL-IISG 122 PI I + I G P L +G+S V++++++L I+ Sbjct: 12 QGYAPIEILRYYYGESMYINTAEQI--SGIPSSWPGYDLTIGSSGDKVRQIQQQLNRIAK 69 Query: 123 DLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 D P+ + + +AV+ FQ GL +G+VD T Sbjct: 70 DYPSLPTIAVDGVYGESTANAVRKFQNVFGLPQTGIVDYPTW 111 >gi|288916828|ref|ZP_06411201.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] gi|288351713|gb|EFC85917.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] Length = 209 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G +V + RL ++ L + AF ++A + FQ HGL G+V T Sbjct: 142 LQVGAFGAAVATWQWRLRLA--LHRDLTVDEAFGPLTQAATRDFQSSHGLVVDGVVGPVT 199 Query: 162 LEAMN 166 M Sbjct: 200 RARMR 204 >gi|225028427|ref|ZP_03717619.1| hypothetical protein EUBHAL_02701 [Eubacterium hallii DSM 3353] gi|224954271|gb|EEG35480.1| hypothetical protein EUBHAL_02701 [Eubacterium hallii DSM 3353] Length = 198 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G S V++++E+L +I+GD P + + ++VK+FQ L + Sbjct: 114 PGYELTIGASGQKVRQMQEQLNVIAGDYPLIPKIRVDGIYGPATANSVKIFQKIFHLPET 173 Query: 155 GMVDSSTLEAMNV 167 G+VD +T ++ Sbjct: 174 GVVDFATWYKISQ 186 >gi|154247651|ref|YP_001418609.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161736|gb|ABS68952.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 393 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G ++ L++RL G + + +AV FQ GL +G + Sbjct: 220 PDDGLSKG----EIEALQQRLRDLGY-SEVGRVDGKWGPRTIAAVSAFQATSGLPVTGEL 274 Query: 158 DSSTLEAMNVP 168 D +T A+ Sbjct: 275 DKATAAALTTS 285 >gi|46203539|ref|ZP_00051386.2| COG1376: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 231 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 51/188 (27%), Gaps = 46/188 (24%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 R + R + ++++ A L ++ +R + VGR Sbjct: 77 PSAVARAIDSRFSRQVVAYDGPGRPGGIVIDTNAKFLYLIQPAGQAIRYGIGVGRPGFV- 135 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++++ Sbjct: 136 WTGTKTITAKREWPDWTPPAEMLRRR---------------------------------- 161 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV-- 346 P+ G N + + + + +H T EP +SGC+R+ Sbjct: 162 -----PDLPRHMAGGPGNPLGARAMYLGTS-LFRIHGTNEPHTIGQN---VSSGCIRMMN 212 Query: 347 RNIIDLDV 354 ++IDL Sbjct: 213 EDVIDLYE 220 >gi|85714819|ref|ZP_01045805.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] gi|85698305|gb|EAQ36176.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] Length = 196 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 45/179 (25%), Gaps = 46/179 (25%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 QL + L +++ L ++ +R + VGR Q Sbjct: 43 QLDPEYRKQVVLYRTSEPPGTIIIQTAERHLYLIQGNGRAIRYGIGVGRAGFQ-WQGILN 101 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I R P W P +I + P Sbjct: 102 ITRKAEWPDWTPPPEMIARQ---------------------------------------P 122 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 G N + + + Y +H T +P +SGC R+ N + Sbjct: 123 YLPRFMAGGPGNPLGARAMYL--GTTVYRIHGTNQPDTIGT---AISSGCFRLVNADVI 176 >gi|319760997|ref|YP_004124934.1| peptidase c1a papain [Alicycliphilus denitrificans BC] gi|317115558|gb|ADU98046.1| peptidase C1A papain [Alicycliphilus denitrificans BC] Length = 966 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 97 LPIRPLHLGNSSVSVQRLRERLII-SGD----LDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P L G+ V RLR+ L+ GD FDA +++A++ +Q GL Sbjct: 1 MPTYLLRQGSQDPLVARLRKVLVAELGDAAESYPQLDKGGATFDAMLDAALRCWQNGRGL 60 Query: 152 DPSGMVDS 159 G+V Sbjct: 61 IADGIVGP 68 >gi|297160931|gb|ADI10643.1| hypothetical protein SBI_07523 [Streptomyces bingchenggensis BCW-1] Length = 433 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L G+S V L++RL L +D V +AV FQ +G++ G+ Sbjct: 362 VLQEGDSGSEVVELQKRLGQL--LLYLGSSDGEYDDGVRNAVTSFQNTYGVEGDPKGVYG 419 Query: 159 SSTLEAMN 166 +T A+ Sbjct: 420 PNTRRALE 427 >gi|255534894|ref|YP_003095265.1| putative phage-related protein (hydrolase) [Flavobacteriaceae bacterium 3519-10] gi|255341090|gb|ACU07203.1| putative phage-related protein (hydrolase) [Flavobacteriaceae bacterium 3519-10] Length = 273 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + + +V L E L G +S +F A V++AVK FQ ++ L G+V Sbjct: 3 TLKVKAKAPAVYTLCEMLSKLGY---PVKISDSFTAEVDAAVKDFQKKNALVVDGVVGMK 59 Query: 161 TLEAM 165 T + + Sbjct: 60 TWQVL 64 >gi|218531056|ref|YP_002421872.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218523359|gb|ACK83944.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 240 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 57/199 (28%), Gaps = 48/199 (24%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +T A + R + R + ++++ A L ++ +R Sbjct: 77 GPATRPAPEEGMIAR--TVDPRFARQVVAYDGPGRAGQIVIDTNAKYLYLIQPAGQAIRY 134 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + VGR I+ P W P ++++ Sbjct: 135 GIGVGRPGFV-WTGAKTISAKREWPDWTPPAEMLRRR----------------------- 170 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 P+ + G N + + + + +H T EP Sbjct: 171 ----------------PDLPRHMEGGPENPLGARAMYLGTS-LYRIHGTNEPHTIGQN-- 211 Query: 338 FETSGCVRV--RNIIDLDV 354 +SGC+R+ ++IDL Sbjct: 212 -VSSGCIRMMNEDVIDLYE 229 >gi|220932970|ref|YP_002509878.1| ErfK/YbiS/YcfS/YnhG family protein [Halothermothrix orenii H 168] gi|219994280|gb|ACL70883.1| ErfK/YbiS/YcfS/YnhG family protein [Halothermothrix orenii H 168] Length = 181 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 11/97 (11%) Query: 272 HMIDEKGKEVF--VEEVDWNSPEPPNFIFRQDPGKINA---MASTKIEFYSRNNTYMHDT 326 ++ G + + S P F+ N + + ++F + + +H T Sbjct: 14 LILKNNGSIIATYPVAIGKPSTPTPVGDFKVLNKIKNPGGVLGTRWLQFTWQQH-GIHGT 72 Query: 327 PEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 +P L ++GCVR+ N + +L ++ TP Sbjct: 73 NKPWLIGQ---AVSNGCVRMYNRDVEELYDYVSVGTP 106 >gi|255640072|gb|ACU20327.1| unknown [Glycine max] Length = 305 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 20/187 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G + + ++ G + + FD + SA+K +Q + L+ +G D + Sbjct: 44 TYHPGQNYKGLSNVKNYFHHLGYIPNAPHFDDNFDDTLVSAIKTYQKNYNLNVTGKFDIN 103 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 TL+ + + + + +N + + ++P + G L Sbjct: 104 TLKQI-MTPRCGVPDIIINTNKTTSF--GMISDYTFFKDMPR-----WQAGTTQLTY--A 153 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 R S I R W +I ++ + + NI ++ Sbjct: 154 FSPEPRLDDTFKSAIAR--AFSKWTPVVNIAFQETTS--------YETANIKILFASKNH 203 Query: 281 VFVEEVD 287 D Sbjct: 204 GDPYPFD 210 >gi|163852411|ref|YP_001640454.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163664016|gb|ABY31383.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 160 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 48/193 (24%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 L L R + + ++V L V+ G +R V VGR + Sbjct: 7 APLDPALARTTVDFATREPVGTLVVETAERRLYLVQPGGKAMRYPVSVGRAG-LAWTGRA 65 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 I+R + P W +I + Sbjct: 66 EIDRKLEWPDWNPAPDMIGRH--------------------------------------- 86 Query: 294 PNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN-- 348 P+ R + G + + + + R+ Y +H T EP +SGC+R+ N Sbjct: 87 PDLPSRLEGGPFSPVGARALYLAQNRRDTLYRIHGTNEPETIGQ---AVSSGCIRMLNDD 143 Query: 349 IIDLDVWLLKDTP 361 ++DL + T Sbjct: 144 VMDLYERVPVGTK 156 >gi|115526294|ref|YP_783205.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] gi|115520241|gb|ABJ08225.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 190 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 46/182 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + + ++V+ L V G LR + VGR D RI Sbjct: 48 RETVMYDGRYAPGTIVVDTSERRLYLVMEGGRALRYGIGVGR-DGFRWGGVHRITAKKEW 106 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 107 PSWTPPAQMLRRR---------------------------------------PDLPRHMV 127 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 G N + + + +H + EP +SGC R+ N + DL + Sbjct: 128 GGVDNPLGARAMYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTNEDVTDLYDRVRVG 183 Query: 360 TP 361 TP Sbjct: 184 TP 185 >gi|330822859|ref|YP_004386162.1| peptidase C1A papain [Alicycliphilus denitrificans K601] gi|329308231|gb|AEB82646.1| peptidase C1A papain [Alicycliphilus denitrificans K601] Length = 966 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 97 LPIRPLHLGNSSVSVQRLRERLII-SGD----LDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P L G+ V RLR+ L+ GD FDA +++A++ +Q GL Sbjct: 1 MPTYLLRQGSQDPLVARLRKVLVAELGDAAESYPQLDKGGATFDAMLDAALRCWQNGRGL 60 Query: 152 DPSGMVDS 159 G+V Sbjct: 61 IADGIVGP 68 >gi|312112233|ref|YP_003990549.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y4.1MC1] gi|311217334|gb|ADP75938.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus sp. Y4.1MC1] Length = 111 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 22/106 (20%) Query: 267 KDNNIHMIDEK----------GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 + + + D GK + + A + Sbjct: 10 NKHQLKLYDGHRLIKVYPIAVGKMLTPTPSGIYTIINKQR------NPGGAFGVLWLGLS 63 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + +H T P + GC+R+ N +I+L + T Sbjct: 64 RPH-YGIHGTNNPSSIGKN---VSRGCIRMYNHDVIELSSMVPVGT 105 >gi|229016081|ref|ZP_04173035.1| hypothetical protein bcere0030_6610 [Bacillus cereus AH1273] gi|229022303|ref|ZP_04178843.1| hypothetical protein bcere0029_6590 [Bacillus cereus AH1272] gi|228738997|gb|EEL89453.1| hypothetical protein bcere0029_6590 [Bacillus cereus AH1272] gi|228745230|gb|EEL95278.1| hypothetical protein bcere0030_6610 [Bacillus cereus AH1273] Length = 253 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 67 TKYKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|326439844|ref|ZP_08214578.1| hypothetical protein SclaA2_02210 [Streptomyces clavuligerus ATCC 27064] Length = 356 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R + G+ V +L L+ G + +D E+AVK +Q + Sbjct: 109 PVPSFREMKPGDRGSDVLQLERNLVALGY-GGGLYVDPRYDRATEAAVKRWQKSLNRVVT 167 Query: 155 GMVDSSTL 162 G V + Sbjct: 168 GRVGEGHV 175 >gi|295318214|gb|ADF98591.1| glycosyl hydrolase, family 25/peptidoglycan binding domain protein [Clostridium botulinum F str. 230613] Length = 307 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 249 KQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQKDCHLVADGIVGKET 307 >gi|295396865|ref|ZP_06806993.1| carboxy-terminal processing protease CtpA [Aerococcus viridans ATCC 11563] gi|294974891|gb|EFG50590.1| carboxy-terminal processing protease CtpA [Aerococcus viridans ATCC 11563] Length = 523 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G++S +++ + L+ G F SAV Q GL +G++ Sbjct: 435 TSQTYQEGDASGAIKNIEAILVALGY--QDSEADAVFAEDTTSAVLALQADQGLPETGVI 492 Query: 158 DSSTLEAMNVPVDLRIRQ 175 D+ T AM + I Sbjct: 493 DTETASAMISAIQALIAS 510 >gi|312438178|gb|ADQ77249.1| carboxy-terminal processing protease [Staphylococcus aureus subsp. aureus TCH60] Length = 496 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENLVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|153940604|ref|YP_001390124.1| glycosy hydrolase family protein [Clostridium botulinum F str. Langeland] gi|152936500|gb|ABS41998.1| glycosyl hydrolase, family 25/peptidoglycan binding domain protein [Clostridium botulinum F str. Langeland] Length = 309 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 251 KQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQKDCHLVADGIVGKET 309 >gi|150398463|ref|YP_001328930.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150029978|gb|ABR62095.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 224 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 45/190 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I ++ R K ++VN P+ L V G +R + VG+ Sbjct: 58 PGVPINRVDQRFHRQIVDYPTKERPGTIVVNTPSRFLYYVLPGGKAVRYGIGVGKQGFA- 116 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P K+M + +Y+ Sbjct: 117 WEGEAYVAWKQEWPTWHPP-----KEMAERKPEVARYVDAG------------------- 152 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCV 344 PG N + + + +++ +H TPE +SGC+ Sbjct: 153 -----------MGPGIGNPLGARALYLFNKEGKDTLFRLHGTPEWSSIGT---AASSGCI 198 Query: 345 RV--RNIIDL 352 R+ ++I+DL Sbjct: 199 RLMNQDIMDL 208 >gi|49483610|ref|YP_040834.1| protease [Staphylococcus aureus subsp. aureus MRSA252] gi|257425484|ref|ZP_05601909.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 55/2053] gi|257428144|ref|ZP_05604542.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 65-1322] gi|257430776|ref|ZP_05607158.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus 68-397] gi|257433535|ref|ZP_05609893.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus E1410] gi|257436376|ref|ZP_05612423.1| carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus M876] gi|282904003|ref|ZP_06311891.1| carboxyl- protease [Staphylococcus aureus subsp. aureus C160] gi|282905765|ref|ZP_06313620.1| ctpA-family serine protease [Staphylococcus aureus subsp. aureus Btn1260] gi|282908737|ref|ZP_06316555.1| peptidase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914211|ref|ZP_06321998.1| carboxyl- protease [Staphylococcus aureus subsp. aureus M899] gi|282919133|ref|ZP_06326868.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus C427] gi|282924316|ref|ZP_06331990.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus C101] gi|283958185|ref|ZP_06375636.1| carboxyl- protease [Staphylococcus aureus subsp. aureus A017934/97] gi|293501235|ref|ZP_06667086.1| ctpA serine protease [Staphylococcus aureus subsp. aureus 58-424] gi|293510198|ref|ZP_06668906.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus M809] gi|293526791|ref|ZP_06671476.1| carboxyl- protease [Staphylococcus aureus subsp. aureus M1015] gi|295427933|ref|ZP_06820565.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591105|ref|ZP_06949743.1| carboxy-terminal processing protease [Staphylococcus aureus subsp. aureus MN8] gi|81696485|sp|Q6GGY8|CTPAL_STAAR RecName: Full=Probable CtpA-like serine protease gi|49241739|emb|CAG40429.1| putative protease [Staphylococcus aureus subsp. aureus MRSA252] gi|257271941|gb|EEV04079.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 55/2053] gi|257274985|gb|EEV06472.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 65-1322] gi|257278904|gb|EEV09523.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus 68-397] gi|257281628|gb|EEV11765.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus E1410] gi|257284658|gb|EEV14778.1| carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus M876] gi|282313703|gb|EFB44096.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus C101] gi|282316943|gb|EFB47317.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus C427] gi|282322279|gb|EFB52603.1| carboxyl- protease [Staphylococcus aureus subsp. aureus M899] gi|282327001|gb|EFB57296.1| peptidase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331057|gb|EFB60571.1| ctpA-family serine protease [Staphylococcus aureus subsp. aureus Btn1260] gi|282595621|gb|EFC00585.1| carboxyl- protease [Staphylococcus aureus subsp. aureus C160] gi|283790334|gb|EFC29151.1| carboxyl- protease [Staphylococcus aureus subsp. aureus A017934/97] gi|290920863|gb|EFD97926.1| carboxyl- protease [Staphylococcus aureus subsp. aureus M1015] gi|291096240|gb|EFE26501.1| ctpA serine protease [Staphylococcus aureus subsp. aureus 58-424] gi|291467142|gb|EFF09660.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus M809] gi|295128291|gb|EFG57925.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575991|gb|EFH94707.1| carboxy-terminal processing protease [Staphylococcus aureus subsp. aureus MN8] gi|315195315|gb|EFU25702.1| putative protease [Staphylococcus aureus subsp. aureus CGS00] Length = 496 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENLVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|260462422|ref|ZP_05810630.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259031916|gb|EEW33184.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 276 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 45/227 (19%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + ++ +R ++V+ L V G +R V +GR + Sbjct: 70 PAIPVDRIDPQFLRQIVPDPTGQKPGTIVVDTTGHFLYLVRPGGQAIRYGVGLGRAGFE- 128 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +I + L+Q Y DN Sbjct: 129 WSGDAVVQWKQKWPKWTPPDEMIARQ--PELKQ---YSADNGGM---------------- 167 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + + + + Y +H +PE +SGCVR Sbjct: 168 ------------PGGLKNPLGARALYLFQGNVDTLYRLHGSPEWRSIGKS---VSSGCVR 212 Query: 346 V--RNIIDLDVWLLKDTP---TWSRYHIEEVVKTRKTTPVKLATEVP 387 + ++IIDL + +P T T + + VP Sbjct: 213 LMNQDIIDLYDRVPSKSPVIVTSDARQPMVAAATANHKAIPIDAGVP 259 >gi|111225991|ref|YP_716785.1| N-acetylmuramoyl-L-alanine amidase [Frankia alni ACN14a] gi|111153523|emb|CAJ65280.1| N-acetylmuramoyl-L-alanine amidase (Autolysin) [Frankia alni ACN14a] Length = 233 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G V+ + R+ G + F +A + FQ HGL G+V +T Sbjct: 173 VGQDRADVRAWQTRMSQLGY---PIAVDGHFGPRSAAAARSFQGSHGLAVDGIVGPATWH 229 Query: 164 A 164 A Sbjct: 230 A 230 >gi|253573587|ref|ZP_04850930.1| spore cortex-lytic enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251847115|gb|EES75120.1| spore cortex-lytic enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 277 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G V L+ RL G L F A+K FQ G+ Sbjct: 42 PAFSEQVIDYGAYGKDVYELQGRLAYLGFYH--GKLDSYFGPKTLGALKWFQSEFGMKVD 99 Query: 155 GMVDSST 161 G+ T Sbjct: 100 GLAGPKT 106 >gi|94986332|ref|YP_605696.1| peptidoglycan binding domain-containing protein [Deinococcus geothermalis DSM 11300] gi|94556613|gb|ABF46527.1| Peptidoglycan-binding domain 1 [Deinococcus geothermalis DSM 11300] Length = 251 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + V+ ++ RLI + + V+ FQ + L +G VD +T Sbjct: 176 PRMNGADVRAVQNRLIALTRPSSGGQGDGWYGPVTAATVRAFQAANALPVTGRVDRATWN 235 Query: 164 AM 165 A+ Sbjct: 236 AL 237 >gi|282861682|ref|ZP_06270746.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] gi|282563498|gb|EFB69036.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] Length = 334 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L G+ V L+ RL + VE AV+ FQ + G+ Sbjct: 259 TLRRGDQGPEVAELQRRLREK--WIYQGPDDAHYSDRVERAVREFQRWVSVGTDAPGVYG 316 Query: 159 SSTLEAMNV 167 T +A+ Sbjct: 317 PETRKALEA 325 >gi|149882927|ref|YP_001294864.1| endolysin [Burkholderia phage BcepNY3] gi|148763578|gb|ABR10561.1| endolysin [Burkholderia phage BcepNY3] Length = 255 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G S +V L+ RL + S FDA V +A++ +Q HG+ P G+ Sbjct: 2 AAPLIVGASGRAVVFLQSRLGL--------AQSGQFDAGVATALRQWQEAHGMTPDGVYG 53 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIK 184 S T M + + R++ Sbjct: 54 SQTNAVMT---ARALSDIADAAARLR 76 >gi|75676672|ref|YP_319093.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] gi|74421542|gb|ABA05741.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] Length = 371 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 48/190 (25%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 +QL L R + K ++V+ L V +R V VGR D T Sbjct: 174 KQLPERLRRKEVSFSTKEPAGTIVVDTSNTHLYYVLGNNRAIRYGVRVGR-DGFTWAGVQ 232 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 +I+R P W P +I++ Sbjct: 233 KISRKAEWPDWHPPTEMIERQ--------------------------------------- 253 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNII 350 P G N + + + S Y +H T +P F +SGC+ + ++ Sbjct: 254 PYLPRFMAGGPGNPLGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCIGMLNEDVS 308 Query: 351 DLDVWLLKDT 360 DL + T Sbjct: 309 DLFDRVKVGT 318 >gi|302874407|ref|YP_003843040.1| SpoIID/LytB domain-containing protein [Clostridium cellulovorans 743B] gi|307690988|ref|ZP_07633434.1| SpoIID/LytB domain-containing protein [Clostridium cellulovorans 743B] gi|302577264|gb|ADL51276.1| SpoIID/LytB domain protein [Clostridium cellulovorans 743B] Length = 856 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + P+ G V ++ L G + + + SAV FQ L +G Sbjct: 775 VSTLPISYGMRGTDVATIQSGLTTLGY--SPGVIDGIYGSKTYSAVINFQKSVSLKATGS 832 Query: 157 VDSSTLEAMN 166 VD +T AMN Sbjct: 833 VDVTTFNAMN 842 >gi|218673364|ref|ZP_03523033.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium etli GR56] Length = 195 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 43/182 (23%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I +++ L R + E ++V+ PA V +R V VGR Sbjct: 33 QVPIDKIKPELRRQEVAYETAHAAGTIVVDTPARRAYYVLGNGRAMRYGVGVGREG-LAF 91 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + I R P W ++ +++ Sbjct: 92 AGGAYIGRKAEWPSWTPTENMQRRE----------------------------------- 116 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 G N + + + + + +H T +P +SGC+R+ Sbjct: 117 -ERYRRLAGGMQGGPNNPLGARAMYLYRGGNDTHFRIHGTNQPESIG---LAMSSGCIRM 172 Query: 347 RN 348 N Sbjct: 173 MN 174 >gi|218510942|ref|ZP_03508820.1| hypothetical protein RetlB5_28202 [Rhizobium etli Brasil 5] Length = 181 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 57/185 (30%), Gaps = 42/185 (22%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A V V + ++ R K L V+++ L VE R + VGR Sbjct: 36 AQIVRVAQMPKYVKPQFKRKKVRLMTTEAAGTVIIDTNNKYLYLVEGNNRATRYGIGVGR 95 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 D +I R P W P + +++ Sbjct: 96 -DGFGWSGIVKIGRKAEWPAWTPPAEMRRRE----------------------------- 125 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFET 340 + + Q+ G+ N + + + R+ + +H T +P + + Sbjct: 126 ------AAKGHIIPAYQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGLNM---S 176 Query: 341 SGCVR 345 SGC+R Sbjct: 177 SGCIR 181 >gi|157692794|ref|YP_001487256.1| spore cortex-lytic enzyme [Bacillus pumilus SAFR-032] gi|157681552|gb|ABV62696.1| spore cortex-lytic enzyme [Bacillus pumilus SAFR-032] Length = 303 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 3/108 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ ++G+ Sbjct: 31 AFTSQVIQRGATGEDVVELQARLQYNGFY--NGKIDGVYGWGTYWAVRNFQSQYGVKKVD 88 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 G+V T + +Q L + + PA Sbjct: 89 GLVGKQTKSLLVQKTKYYKDFVQQQLQKGNEFTHYGGKPLDQQTKAPA 136 >gi|114566295|ref|YP_753449.1| hypothetical protein Swol_0756 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337230|gb|ABI68078.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 204 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V L++ L G F A +AV FQ L G+V T Sbjct: 32 LQWGSRGNAVVELQKTLNNQGFWC--GATDGIFGAKTYNAVINFQKSKKLQVDGIVGPQT 89 Query: 162 LEAMNVPVDLR 172 +A+ + Sbjct: 90 KKALGLSTATP 100 >gi|282599261|ref|YP_003358573.1| hypothetical protein [Shigella phage phiSboM-AG3] gi|226973567|gb|ACO94320.1| conserved hypothetical phage protein [Shigella phage phiSboM-AG3] Length = 264 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG V+ L++ L G + F E+AVK Q GL G+V T Sbjct: 4 LKLGTRGSEVKSLQQSLNKIGF---TLVADGIFGKATENAVKTVQAGAGLVIDGIVGPKT 60 Query: 162 LEAMN 166 A+ Sbjct: 61 SYAIR 65 >gi|332705083|ref|ZP_08425167.1| Putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332356150|gb|EGJ35606.1| Putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 238 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 12/102 (11%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGW-PELPIRPL---HLGNSSVSVQRLRERLIISGDL 124 I T A+ +A I+ G LP R L V+ L+E L+ + Sbjct: 144 IFGPNTEARLNQA-----PIVGFGKTNESLPERRLSLTKPYLEGDDVRELQEALVKA--- 195 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + + F E AVK FQ L G+V +T A+ Sbjct: 196 TITVEVDGVFGPATEEAVKEFQKLKDLTVDGIVGPATRSALG 237 >gi|293400844|ref|ZP_06644989.1| LysM domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305870|gb|EFE47114.1| LysM domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 226 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 90 SRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 R G P L G+ V V L++ L G ++ L AF + +A+ +Q Sbjct: 135 KRYGTPACSAGYPTLRQGSRGVYVLILQDALNALGY--STQTLDGAFGSNTRAALIAYQR 192 Query: 148 RHGLDPSGMVDSSTLEAM 165 +GL G+ T + Sbjct: 193 NNGLTADGISGCGTWTRL 210 >gi|303239713|ref|ZP_07326237.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2] gi|302592650|gb|EFL62374.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2] Length = 110 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 15/116 (12%) Query: 251 IQKDMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + + ++ DNN+ GK + Q Sbjct: 1 MYRIEIDTQKRVLTLFNDNNLVKRYPVAVGKPSTPTPPGNWTIIKKGLWGAQ-------F 53 Query: 309 ASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 ++ Y +H T +P + + GCVR+ + +L + TP Sbjct: 54 GGHFMQLSVPWGIYGIHGTDKPWSISQ---AVSHGCVRMYSPDAGELYNMVPIGTP 106 >gi|257784149|ref|YP_003179366.1| Peptidoglycan-binding domain 1 protein [Atopobium parvulum DSM 20469] gi|257472656|gb|ACV50775.1| Peptidoglycan-binding domain 1 protein [Atopobium parvulum DSM 20469] Length = 309 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 18/151 (11%) Query: 29 KPIHASVLDEIINESYHSIVNDRF--DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 PI + + + +V + ++ + + S +++ + + ++ Sbjct: 2 DPITPGSIGAAVEDIQERLVKLGYTIEDDERQNHVFDKSTARAVAR---FRLDHDLS-LG 57 Query: 87 DILSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + + W + LG+ V++L+ERL I G + + Sbjct: 58 EEVDASTWAIMVDEGYELGDRTLYLRLPNFHGNDVRQLQERLNILGF--SCGKVDGHYGV 115 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + E+AVKLFQ G GM TL+A+ Sbjct: 116 HTEAAVKLFQESVGELADGMAFQDTLDAIER 146 >gi|153007818|ref|YP_001369033.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151559706|gb|ABS13204.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 264 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 42/183 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 L + ++ +R + + ++V+ A L V+ G +R +V VGR T Sbjct: 87 PALDLSKIADRNLRREVDYATTEPVGTIVVDPYARYLYLVQPGGKAIRYSVGVGRAG-LT 145 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +++ P W ++I +++P++ Sbjct: 146 FKGDAKLAYKSQWPRWTPTANMI--------KRNPEHYAK-------------------- 177 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + + G N + + + Y ++ Y +H T EP +SGC+R Sbjct: 178 -------YANGLEGGIRNPLGARALYLYRDGKDTLYRIHGTNEPWSVGK---AASSGCIR 227 Query: 346 VRN 348 + N Sbjct: 228 LYN 230 >gi|77164193|ref|YP_342718.1| peptidoglycan binding domain-containing protein [Nitrosococcus oceani ATCC 19707] gi|76882507|gb|ABA57188.1| Peptidoglycan-binding domain 1 [Nitrosococcus oceani ATCC 19707] Length = 465 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 3/108 (2%) Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 D+ + A+ + +P +V ++ RL Sbjct: 183 ESARRDVDPYRSQLQAEGRNRFVRSPATTANAPASTQASKPSRP-TPDATVLAIQRRLNE 241 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 G + F SA++ FQ + + G+ S L +N Sbjct: 242 LGY--NAGTPDGLFGNKTRSAIQAFQRDNAVATDGVASRSLLSQLNAS 287 >gi|218663164|ref|ZP_03519094.1| hypothetical protein RetlI_29384 [Rhizobium etli IE4771] Length = 268 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 46/227 (20%) Query: 144 LFQMRHGLDPSG----MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 F +GL + + + + + ++Q +R + + V+V+ Sbjct: 75 QFHQTYGLPVTNPVHAAMYGELRDEDFTLPSIPVSRVQPQFLRQEVDYQTTERPGTVVVD 134 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 A L VE +R V +GR D I P W P +M++ Sbjct: 135 TKARFLYFVEGNGKAMRYGVGLGR-DGYAWSGRGVIQWKQKWPRWTPPV-----EMVSRQ 188 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YS 317 + + +N +PG N + + + Sbjct: 189 PEVRAFSVENGGM----------------------------NPGLQNPLGARAMYIFKDG 220 Query: 318 RNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++ Y +H TP+ +SGCVR+ ++++DL L Sbjct: 221 QDTLYRIHGTPDWQSIGK---ATSSGCVRMLNQDVVDLYDRLPAKAE 264 >gi|254439477|ref|ZP_05052971.1| ErfK/YbiS/YcfS/YnhG superfamily [Octadecabacter antarcticus 307] gi|198254923|gb|EDY79237.1| ErfK/YbiS/YcfS/YnhG superfamily [Octadecabacter antarcticus 307] Length = 184 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 7/134 (5%) Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V R+DR + F YW+I + + + + R D I + E Sbjct: 35 PRVVRIDRDYATGEIHVEPSSFKLYWMIGPGLAMEYSVGIGRAGLYESGDFIIQVKKEWP 94 Query: 279 KEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNN 334 ++ + + G N + + + +R+ +H T P + Sbjct: 95 SWTPTPAMIERSPASYAQYADGMAGGINNPLGARALYLFSGNRDTYLRIHGTNAPRTIGS 154 Query: 335 VVRFETSGCVRVRN 348 ++GCVR+ N Sbjct: 155 ---AVSNGCVRLVN 165 >gi|168003279|ref|XP_001754340.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694442|gb|EDQ80790.1| predicted protein [Physcomitrella patens subsp. patens] Length = 861 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V L+ L G L L+ F + A++ FQ+ G+ +G+ SS+ +A Sbjct: 423 GDSGPQVLDLQRALYWYGFLPKRTELTAYFGPGTKRALQQFQIAQGVPGTGVWGSSSRQA 482 Query: 165 M 165 + Sbjct: 483 L 483 >gi|302391221|ref|YP_003827041.1| cell wall hydrolase SleB [Acetohalobium arabaticum DSM 5501] gi|302203298|gb|ADL11976.1| cell wall hydrolase SleB [Acetohalobium arabaticum DSM 5501] Length = 234 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G+ V V L+ +L + G + F AV+ FQ ++ L +G+VD Sbjct: 41 ARDLKYGDEGVDVVFLQVQLKVLGFY--EGEIDGLFGRGTLEAVEKFQNKNDLKVNGIVD 98 Query: 159 SSTLEAMN 166 + + + Sbjct: 99 KNVYKYLE 106 >gi|149179709|ref|ZP_01858214.1| hypothetical protein BSG1_01800 [Bacillus sp. SG-1] gi|148851901|gb|EDL66046.1| hypothetical protein BSG1_01800 [Bacillus sp. SG-1] Length = 490 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L + S V+ E L G +D AV+ FQ GL+ +G + Sbjct: 398 PDKELKESDLSDQVKAAEEMLKAGGY--NPGKADGFYDEQTTEAVRAFQEEEGLEVTGNL 455 Query: 158 DSSTL 162 +S ++ Sbjct: 456 NSESI 460 >gi|332665190|ref|YP_004447978.1| peptidoglycan-binding domain 1 protein [Haliscomenobacter hydrossis DSM 1100] gi|332334004|gb|AEE51105.1| Peptidoglycan-binding domain 1 protein [Haliscomenobacter hydrossis DSM 1100] Length = 363 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L L +S +V L+ L G + F + VK FQ +H L G+V Sbjct: 2 QTLKLDSSGHAVIVLQHFLKTIG---QPISVDGEFGPKTLAQVKAFQSKHKLRADGVVGP 58 Query: 160 STLE 163 T Sbjct: 59 KTWS 62 >gi|255324016|ref|ZP_05365141.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium tuberculostearicum SK141] gi|255298873|gb|EET78165.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium tuberculostearicum SK141] Length = 393 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 13/123 (10%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLD------------PSKGLSVAFDAYVESAVKLFQM 147 R L +G++SV V R L G L +FDA + +K FQ Sbjct: 3 RVLRVGDTSVRVAEARATLARLGLLSDFKGELSAWKKQKYSESDKSFDANLSEVLKAFQQ 62 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 G+ P+G +D TL + + ++ +L+ + + + Sbjct: 63 SRGIVPTGEIDDLTLRELRQ-ASYTLGSRVLSYEPANELVGDDISQLQQQLQELGFYQQR 121 Query: 208 VEN 210 V+ Sbjct: 122 VDG 124 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 18/131 (13%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGN 106 F L+ S+ +++ KA + I+ G +L +R L LG+ Sbjct: 30 FKGELSAWKKQKYSESDKSFDANLSEVLKAFQQSRGIVPTGEIDDLTLRELRQASYTLGS 89 Query: 107 S-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +L+++L G + F +A+K +Q GL G Sbjct: 90 RVLSYEPANELVGDDISQLQQQLQELGFYQQR--VDGHFGTNTHAALKEYQHNCGLQEDG 147 Query: 156 MVDSSTLEAMN 166 + +T+ A+ Sbjct: 148 VCGPATIRALG 158 >gi|2827777|sp|P29136|MEP1_SOYBN RecName: Full=Metalloendoproteinase 1; AltName: Full=SMEP1; Flags: Precursor gi|1679656|gb|AAB26959.1| metalloproteinase [Glycine max] Length = 305 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 20/187 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G + + ++ G + + FD + SA+K +Q + L+ +G D + Sbjct: 44 TYHPGQNYKGLSNVKNYFHHLGYIPNAPHFDDNFDDTLVSAIKTYQKNYNLNVTGKFDIN 103 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 TL+ + + + + +N + + ++P + G L Sbjct: 104 TLKQI-MTPRCGVPDIIINTNKTTSF--GMISDYTFFKDMPR-----WQAGTTQLTY--A 153 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 R S I R W +I ++ + + NI ++ Sbjct: 154 FSPEPRLDDTFKSAIAR--AFSKWTPVVNIAFQETTS--------YETANIKILFASKNH 203 Query: 281 VFVEEVD 287 D Sbjct: 204 GDPYPFD 210 >gi|312898890|ref|ZP_07758278.1| NlpC/P60 family protein [Megasphaera micronuciformis F0359] gi|310620052|gb|EFQ03624.1| NlpC/P60 family protein [Megasphaera micronuciformis F0359] Length = 249 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + +G+ V +++ L+ G G+ F AV+ FQ GL SG Sbjct: 19 TLSVGAYSVGSQGSDVLLIQQNLVKRGY---KIGMDGIFGNDTRRAVERFQADKGLTISG 75 Query: 156 MVDSSTLE 163 VD+ T + Sbjct: 76 SVDAKTFK 83 >gi|15964840|ref|NP_385193.1| hypothetical protein SMc02636 [Sinorhizobium meliloti 1021] gi|15074019|emb|CAC45666.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 201 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 42/185 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 I +++ +R + V+++ L V+ G + LR + VG+ + Sbjct: 13 PATDISKVEPRFLRQQVPYVTHEPPGTVVIDTENRFLYLVQGGGMALRYGIGVGKAGLE- 71 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +R+ R P W ++ ++ Sbjct: 72 FEGEARVGRKAEWPRWTPTSDMVAREP--------------------------------- 98 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 DPG N + + +R+ + +H T E +SGC+R Sbjct: 99 --ERYGPLAGGMDPGLRNPLGPRALYLYQGNRDTLFRIHGTTEAWSIGK---AVSSGCIR 153 Query: 346 VRNII 350 + N Sbjct: 154 LFNPD 158 >gi|194334671|ref|YP_002016531.1| peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] gi|194312489|gb|ACF46884.1| Peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] Length = 268 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%) Query: 100 RPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V L+ L +G L + F + AVK Q + GL G+V Sbjct: 2 DVLKKGSRKERAVILLQIMLAEAGLLSS---VDGKFGQATDEAVKALQRQSGLVVDGIVG 58 Query: 159 SSTLEAMNVPVDLRIRQLQVNL 180 T + + ++++ Sbjct: 59 EKTWTTLFLQFPDLLQRITAKY 80 >gi|325168442|ref|YP_004280232.1| ErfK/YbiS/YcfS/YnhG family protein [Agrobacterium sp. H13-3] gi|325064165|gb|ADY67854.1| ErfK/YbiS/YcfS/YnhG family protein [Agrobacterium sp. H13-3] Length = 244 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +Q+ R + L ++V+ P+ L V+ G +R V +GR Sbjct: 79 PAVPYKQIDSRYYRQQVLDPTGEAPGTIVVDTPSRFLYLVQPGGTAMRYGVGIGREGFA- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + L + +++ + Sbjct: 138 WRGNGVIQWRQKWPRWKPPNEMVARQ--PELAK--YSIENGGME---------------- 177 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 PG N + + + R+ Y +H P+ +SGCVR Sbjct: 178 -------------PGLKNPLGARALYIFAGGRDTLYRLHGNPQWRSIGK---AVSSGCVR 221 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 222 LLNQDIIDLYERVPIKAP 239 >gi|90419247|ref|ZP_01227157.1| ErfK/YbiS/YcfS/YnhG [Aurantimonas manganoxydans SI85-9A1] gi|90336184|gb|EAS49925.1| ErfK/YbiS/YcfS/YnhG [Aurantimonas manganoxydans SI85-9A1] Length = 183 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 24/112 (21%) Query: 264 QYLKDNNIHM----IDEKGKEVFVEEVDWNSPEPPNFIFRQDPG------------KINA 307 + + I + + G+ V + +W P + +++PG N Sbjct: 64 GFARRYGIGVGRAGLSFSGQAVVGRKAEWPRWTPTPNMIKREPGKYAKYAGGLKGGPGNP 123 Query: 308 MASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 + + + + ++ Y +H T EP ++GC+R+ ++IDL Sbjct: 124 LGARALYLHRNGQDTLYRIHGTTEPSSIGK---AVSNGCIRMLNEHVIDLYD 172 >gi|46205539|ref|ZP_00048410.2| COG1376: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 158 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 43/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V+ L V +R V VG+ +Q + I+ + P W PR + + Sbjct: 29 IVVSTSERRLYLVNGDGTAIRYPVAVGKPGKQ-WSGATEIDGKYYQPDWSPPREVKRD-- 85 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P + N M + + Sbjct: 86 ------------------------------------NPRLPNLIRGGSPSNPMGAAAMTL 109 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H T P + + GC+R+ N Sbjct: 110 RGGE-YAIHGTNRPSSIGT---YASYGCIRMYN 138 >gi|307328741|ref|ZP_07607913.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] gi|306885690|gb|EFN16704.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] Length = 350 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P P P L G+S V L++RL L +D V V +Q +H + Sbjct: 271 PPGPTGPPALREGDSGPEVAELQKRLSQL--LLYIGAADGDYDGGVRRVVSSYQDQHDIT 328 Query: 153 --PSGMVDSSTLEAMN 166 P G+ +T + Sbjct: 329 GDPDGVYGENTRRDLE 344 >gi|254562044|ref|YP_003069139.1| hypothetical protein METDI3649 [Methylobacterium extorquens DM4] gi|254269322|emb|CAX25288.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 240 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 46/191 (24%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +T A + R + R + ++++ A L ++ +R Sbjct: 77 GPATRPAPEEGMIARAVDPR--FARQVVAYDGPGRAGQIVIDTNAKYLYLIQPAGQAIRY 134 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 + VGR I+ P W P ++++ Sbjct: 135 GIGVGRPGFV-WTGAKTISAKREWPDWTPPAEMLRRR----------------------- 170 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 P+ G N + + + + +H T EP Sbjct: 171 ----------------PDLPRHMVGGPENPLGARAMYLGTS-LYRIHGTNEPHTIGQN-- 211 Query: 338 FETSGCVRVRN 348 +SGC+R+ N Sbjct: 212 -VSSGCIRMMN 221 >gi|254511097|ref|ZP_05123164.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacteraceae bacterium KLH11] gi|221534808|gb|EEE37796.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacteraceae bacterium KLH11] Length = 184 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 8/79 (10%) Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPI 330 + + + V + + ++ Q G N + + + F + +TY +H T +P Sbjct: 93 WRPTDEMIERDPVAYARFKDNDY--VQPGGSDNPLGARALYLFQNGVDTYFRIHGTTQPQ 150 Query: 331 LFNNVVRFETSGCVRVRNI 349 + ++GC+R+ N Sbjct: 151 TIGH---AASNGCIRMLNA 166 >gi|13474433|ref|NP_106001.1| hypothetical protein mlr5313 [Mesorhizobium loti MAFF303099] gi|14025186|dbj|BAB51787.1| mlr5313 [Mesorhizobium loti MAFF303099] Length = 205 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 45/197 (22%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +A + I ++ R + + K ++V+ L VE+ +R + VG Sbjct: 38 DAGYQLPRVPIEKVPRQFHRQEVNYDTKEKPGTIIVDTQNKFLYFVEDDGRAIRYGIGVG 97 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R + + I P W PR +I++ L + Sbjct: 98 REGFE-WHGTAHIALKREWPTWTPPREMIKRQ--PELAK--------------------- 133 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFE 339 F +PG N + + + +++ +H +PE + Sbjct: 134 -------------FADGMEPGLKNPLGARAMYLFNKGGDMGYRLHGSPEWNSIGKAM--- 177 Query: 340 TSGCVRV--RNIIDLDV 354 +SGC+R+ ++IIDL Sbjct: 178 SSGCIRLMNQDIIDLYD 194 >gi|239627635|ref|ZP_04670666.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517781|gb|EEQ57647.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 420 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG++ V++++E+L I + P + AV+ FQ GL + Sbjct: 336 PGNDLTLGSTGDKVRQMQEQLDMIATVYTAIPRVTPDGIYGPRTADAVREFQSIFGLPQT 395 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 396 GVVDFATWYRIS 407 >gi|170738736|ref|YP_001767391.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168193010|gb|ACA14957.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 194 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 21/144 (14%) Query: 236 NRIMFNPYWVIPRSIIQKDMMALL------RQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 ++ +P P +I+ + L R+ +Y G + W Sbjct: 50 RYLIDDPTGEPPGTIVVETRERQLYFVLPERKAIRYGVTVGDEAYGWTGTARVFRKAAWP 109 Query: 290 SPEPPNFIFRQDP-------GKINAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFE 339 PP + R+ P G N + + + + Y +H T EP Sbjct: 110 DWNPPAEMVRRWPHVHPMKGGPANPLGARALYLADGARDTLYRIHGTNEPERIGQ---AA 166 Query: 340 TSGCVRVRNII--DLDVWLLKDTP 361 +SGC+R+RNI DL + D Sbjct: 167 SSGCIRMRNIDVVDLSNRVASDAK 190 >gi|4336674|gb|AAD17887.1| ATP synthase subunit [Bradyrhizobium japonicum] Length = 93 Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 13/64 (20%) Query: 293 PPNFIFRQD-------PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 PP I RQ G N + + + Y +H T P +SGC+ Sbjct: 2 PPEMIVRQPYLPRHMAGGPGNPLGARAMYL--GGTIYRIHGTNAPDTIGK---HVSSGCI 56 Query: 345 RVRN 348 R+ N Sbjct: 57 RLTN 60 >gi|308173925|ref|YP_003920630.1| carboxy-terminal processing protease [Bacillus amyloliquefaciens DSM 7] gi|307606789|emb|CBI43160.1| carboxy-terminal processing protease [Bacillus amyloliquefaciens DSM 7] gi|328553148|gb|AEB23640.1| carboxy-terminal processing protease [Bacillus amyloliquefaciens TA208] gi|328912078|gb|AEB63674.1| carboxy-terminal processing protease [Bacillus amyloliquefaciens LL3] Length = 468 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 6/87 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+S +V ++ L G S ++ +D E AVK FQ + L +G++ Sbjct: 376 AEKTYQYGDSGTTVTNAQKMLEALGY---SVNVNGTYDKAFEQAVKQFQAKEKLKETGIL 432 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIK 184 T + + QL N ++K Sbjct: 433 TGDTTAKLMTDLQK---QLADNDTQMK 456 >gi|163745853|ref|ZP_02153212.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] gi|161380598|gb|EDQ05008.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] Length = 195 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 48/188 (25%), Gaps = 46/188 (24%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVE-NGKVGLRSTVI 220 A + + + + + +G ++ + + +L +G+ Sbjct: 33 SAREFSNEAPVSRNASSFATQRWQDHFDSLGQGAIVADTISRALHYWSADGQTYKVYPTS 92 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 V + T ++ I R P W S++++ Sbjct: 93 VPATEELTKRGYTEIVRKKEGPDWTPTASMMER--------------------------- 125 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 PG N + + + +H T + R + Sbjct: 126 -------------FPHYKYMPPGPDNPLGTHAMYLSWPAYI-IHGTHDTRKIG---RRSS 168 Query: 341 SGCVRVRN 348 GC+ + N Sbjct: 169 DGCIGLYN 176 >gi|15891603|ref|NP_357275.1| hypothetical protein Atu3331 [Agrobacterium tumefaciens str. C58] gi|15160041|gb|AAK90060.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 261 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ +++ +R ++V+ L +R V +GR + Sbjct: 60 PEIPYKRIPRQFLRQMVPNPTGERPGVIVVDTANHFLYLTYEDGQAMRYGVGLGRAGFE- 118 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P +I + L P ++ + Sbjct: 119 WAGRGVIQYKRQWPRWTPPDEMIARQ--PELE--PYSGRNGGME---------------- 158 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 PG N + + + ++ Y +H +PE +SGCVR Sbjct: 159 -------------PGLKNPLGARALYIFKDGKDTIYRLHGSPEWWTIGKS---VSSGCVR 202 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++I+DL + TP Sbjct: 203 LLNQDIVDLYSRVPDGTP 220 >gi|302872715|ref|YP_003841351.1| carboxyl-terminal protease [Caldicellulosiruptor obsidiansis OB47] gi|302575574|gb|ADL43365.1| carboxyl-terminal protease [Caldicellulosiruptor obsidiansis OB47] Length = 472 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + V ++RL G L D +AVK FQ + L PSG++ Sbjct: 380 ATKKFKNGDMDLEVLAAQQRLFYLGYLSSWTA---KMDDSTVAAVKKFQKDNKLYPSGVL 436 Query: 158 DSSTLEAMN 166 D +T + +N Sbjct: 437 DITTQKKLN 445 >gi|257055214|ref|YP_003133046.1| metalloendopeptidase-like membrane protein [Saccharomonospora viridis DSM 43017] gi|256585086|gb|ACU96219.1| metalloendopeptidase-like membrane protein [Saccharomonospora viridis DSM 43017] Length = 323 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 4/77 (5%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + WP+L L G V+ L+ L + F SAV+ FQ Sbjct: 249 VGAATWPKLIYE-LRQGARGNHVRALQTALNKR---SAGILVDGDFGPATNSAVRTFQSV 304 Query: 149 HGLDPSGMVDSSTLEAM 165 + L G+ T A+ Sbjct: 305 NRLVVDGLAGPYTWRAL 321 >gi|218663163|ref|ZP_03519093.1| hypothetical protein RetlI_29379 [Rhizobium etli IE4771] Length = 244 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R + + ++V+ P+ L V+ + +R V +GR Sbjct: 79 PAVPYEEIDPRYYRQRVIDPTGQPPGTIVVDTPSRFLYLVQADGMAMRYGVGIGREGFA- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + E V + Sbjct: 138 WQGSGVIQWRQKWPRWKPPNEMVARQ----------------------------PELVKY 169 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVR 345 + +PG N + + + F + + Y +H P+ +SGCVR Sbjct: 170 SIENGGM-----EPGLKNPLGARALYIFSNGEDTLYRLHGNPDWRSIGK---AVSSGCVR 221 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + P Sbjct: 222 LLNQDIIDLYDRVPTKAP 239 >gi|86356807|ref|YP_468699.1| hypothetical protein RHE_CH01167 [Rhizobium etli CFN 42] gi|86280909|gb|ABC89972.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 268 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 46/227 (20%) Query: 144 LFQMRHGLDPSG----MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 F +GL + + + + + ++Q +R + + V+V+ Sbjct: 75 QFHQTYGLPVTNPLHMAMYGELRDEDFTLPAIPVSRVQPQFLRQEVDYQTIERPGTVVVD 134 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 A L VE +R V +GR D I P W P +M++ Sbjct: 135 TKARFLYFVEPNGKAMRYGVGLGR-DGYAWSGRGVIQWKQKWPRWTPPV-----EMVSRQ 188 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YS 317 + + +N +PG N + + + Sbjct: 189 PEVRAFSAENGGM----------------------------NPGLQNPLGARAMYIFKDG 220 Query: 318 RNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++ Y +H TP+ +SGCVR+ ++++DL L Sbjct: 221 QDTLYRIHGTPDWQSIGK---ATSSGCVRMLNQDVVDLYDRLPAKAE 264 >gi|56421627|ref|YP_148945.1| carboxyl-terminal processing protease [Geobacillus kaustophilus HTA426] gi|56381469|dbj|BAD77377.1| carboxyl-terminal processing protease [Geobacillus kaustophilus HTA426] Length = 482 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL + + ++ L G F E AV+ FQ + L +G +D Sbjct: 392 KPLRYDMNDEQIANAQKMLKGLGF--NPGRTDGYFSKETEQAVQAFQKANQLPVTGRIDE 449 Query: 160 STLEAMNVPVDLRIR 174 +T +A+ + +R Sbjct: 450 ATADALQTKIMEAVR 464 >gi|134299121|ref|YP_001112617.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] gi|134051821|gb|ABO49792.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] Length = 294 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 20/129 (15%) Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I N ++ K + + + N +I++ PP Sbjct: 20 IINKKTNQLGFYEDGLLSKVFPVATGRQRSFTPEGNFRVINK-------------QLNPP 66 Query: 295 NFIFRQDPG-KINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + G N + + + +H P + ++GC+R+ N L Sbjct: 67 YYKKNIPGGSPYNPLGPRWLGLSAPGGPYGIHGNSNPASIGT---YASNGCIRLFNNDIL 123 Query: 353 DVWLLKDTP 361 WL + P Sbjct: 124 --WLYEQVP 130 >gi|168184550|ref|ZP_02619214.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum Bf] gi|237795281|ref|YP_002862833.1| peptidoglycan-binding domain 1 [Clostridium botulinum Ba4 str. 657] gi|182672321|gb|EDT84282.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum Bf] gi|229262124|gb|ACQ53157.1| peptidoglycan-binding domain 1 [Clostridium botulinum Ba4 str. 657] Length = 281 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 3/96 (3%) Query: 68 PIISKETIAQTEKAI-AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 P SK + + +SR + LP G + +++ LI G Sbjct: 180 PSTSKPVQTNKKHPLINQLYAEMSRQDFNTLP--TCRQGARGNITKTIQQMLINIGYPVG 237 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S G F +A+K Q L G+V T Sbjct: 238 SYGADRVFGNGTVTAIKALQRDCNLSVDGVVGKETW 273 >gi|146342579|ref|YP_001207627.1| hypothetical protein BRADO5742 [Bradyrhizobium sp. ORS278] gi|146195385|emb|CAL79410.1| conserved hypothetical protein; putative exported protein [Bradyrhizobium sp. ORS278] Length = 413 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 56/185 (30%), Gaps = 48/185 (25%) Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 NL R + K ++V+ P L V LR V VGR T +I + Sbjct: 217 NLRRQEVDFVTKEPPGTIVVDTPNTYLYLVLGNGRALRYGVRVGREG-FTWTGVQKITKK 275 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 P W P +I++ P Sbjct: 276 TEWPDWYPPSEMIERQ---------------------------------------PYLPR 296 Query: 299 RQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVW 355 G+ N + + + S Y +H T +P F +SGC+ + N + DL Sbjct: 297 FMAGGEGNPLGARAMYLGS--TVYRIHGTNQPSTIGK---FVSSGCIGMLNDDVSDLFDR 351 Query: 356 LLKDT 360 + T Sbjct: 352 VKVGT 356 >gi|92116373|ref|YP_576102.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gi|91799267|gb|ABE61642.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 249 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 59/214 (27%), Gaps = 59/214 (27%) Query: 150 GLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMRIKKLLEQKMGL---RYVLVNIP---- 201 GL SG + ++ EA N R ++L + +K + Y P Sbjct: 38 GLMLSGCMQATHYEATNTSNFTPRDKELLSKVSYVKTPVAAPFRRAIVDYHRKETPGSIM 97 Query: 202 ----AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 L V +G +R + VG +++ P W I + + Sbjct: 98 VDSDNHYLYYVLDGGKAIRYGITVGEEA-MAWSGIAKVGAKTEWPSWHPTPGEIARLGVP 156 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF-- 315 PG N M S + Sbjct: 157 KY----------------------------------------VAPGPDNPMGSRALYLYA 176 Query: 316 YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 ++ + +H T +P +SGC+R+ N Sbjct: 177 NGKDTLFRIHGTNQPEYIGAS---ISSGCIRMTN 207 >gi|323704753|ref|ZP_08116330.1| carboxyl-terminal protease [Thermoanaerobacterium xylanolyticum LX-11] gi|323535679|gb|EGB25453.1| carboxyl-terminal protease [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ +V+ L+ L + G + F A+ FQ G+ +G++D T+ Sbjct: 369 KKGDTGYNVKLLQSYLSLLGYYKGEP--NGYFGNDTYDALISFQKYAGIPATGVMDRGTV 426 Query: 163 EAMN 166 +A++ Sbjct: 427 DALS 430 >gi|298492059|ref|YP_003722236.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298233977|gb|ADI65113.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 182 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 9/89 (10%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 ++ + Y + + L G++ +SV+ ++ L+ +G + F Sbjct: 103 QQLLTRYPAYGQQ------AMPTLLFGSAGMSVRIMQRLLVSNGY---GVRVDGIFGPLT 153 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 E+A+K FQ +H L G+V T +++ Sbjct: 154 EAAIKAFQNQHNLFVDGIVGQKTWWELSI 182 >gi|115522535|ref|YP_779446.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisA53] gi|115516482|gb|ABJ04466.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 171 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 41/160 (25%), Gaps = 45/160 (28%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++V L V +R V VG+ +Q ++I+ P W P Sbjct: 35 DYSPGTIVVKTAERRLYLVVEEGRAVRYPVGVGKPGKQ-WAGVTKIDGKYREPAWAPPAD 93 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAM 308 + + + PN G N M Sbjct: 94 VKR---------------------------------------DNPNIPNVIPGGSPANPM 114 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T P F + GCVR+ N Sbjct: 115 GVAAMTLAGGE-YAIHGTNRPSSIG---GFVSYGCVRMLN 150 >gi|329934357|ref|ZP_08284436.1| hypothetical protein SGM_0148 [Streptomyces griseoaurantiacus M045] gi|329305953|gb|EGG49808.1| hypothetical protein SGM_0148 [Streptomyces griseoaurantiacus M045] Length = 282 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V + L +G G+ F AV+ Q R GL G V T +A Sbjct: 222 GSTGPEVAEAQCLLRRAG--ISPGGIDGIFGPLTRRAVRAMQQRSGLAVDGRVGPHTWKA 279 Query: 165 MN 166 + Sbjct: 280 LR 281 >gi|306844000|ref|ZP_07476595.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO1] gi|306275755|gb|EFM57479.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO1] Length = 230 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 72/218 (33%), Gaps = 19/218 (8%) Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G V + A V + ++ + N+ ++ K A + N Sbjct: 17 GAVAPA-FAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAART----NNTAKA 71 Query: 215 LRSTVIV-GRVDRQTPILHSRINRIMFNPYW----VIPRSIIQKDMMALLRQDPQYLKDN 269 + ++ R T + ++ V + ++ +A+ +Q ++ Sbjct: 72 NKYSIDPKFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKA 131 Query: 270 NIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHD 325 I E + + E ++ + F D G N + S + + N +H Sbjct: 132 TISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHG 191 Query: 326 TPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 T +P + ++GC R+ +++DL + T Sbjct: 192 TVQPWTIGSS---ASNGCFRMINEDVMDLYDRVTLGTE 226 >gi|298493157|ref|YP_003723334.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298235075|gb|ADI66211.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 358 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 3/90 (3%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q I + + + L G V+ ++ +L G + + + + ++AV F Sbjct: 35 QAITATPKSAPIQLMVLSPGVRGAEVEVIQVQLKALGYY--NDLIDGQYGSSTQNAVTRF 92 Query: 146 QMRHGLDP-SGMVDSSTLEAMNVPVDLRIR 174 Q G G+ ST + + + RI+ Sbjct: 93 QQEQGFKKADGIAYESTRQHLQEVLSRRIK 122 >gi|114707262|ref|ZP_01440160.1| hypothetical protein FP2506_05126 [Fulvimarina pelagi HTCC2506] gi|114537458|gb|EAU40584.1| hypothetical protein FP2506_05126 [Fulvimarina pelagi HTCC2506] Length = 230 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 45/199 (22%) Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 VP + N+ R ++ ++V+ L VE G + R + VG+ Sbjct: 56 VPAIPASVLMDRNVRREVLWTGKEKPGT-IVVDPENHYLFLVEEGGIARRYAIGVGKEGF 114 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 + + R P W ++I++D D G+ Sbjct: 115 A-FSGTTTVKRKADWPGWTPTDNMIRRDP-------------------DRYGQ------- 147 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGC 343 F G N + + + Y +H T EP + +SGC Sbjct: 148 ---------FAGGVPGGLNNPLGARALYLYRGGRDTHFRIHGTNEPHTVGRSM---SSGC 195 Query: 344 VRV--RNIIDLDVWLLKDT 360 +R+ +++IDL+ + T Sbjct: 196 IRMMNQDVIDLEDRVPIGT 214 >gi|295696531|ref|YP_003589769.1| spore cortex-lytic enzyme [Bacillus tusciae DSM 2912] gi|295412133|gb|ADG06625.1| spore cortex-lytic enzyme [Bacillus tusciae DSM 2912] Length = 239 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 15/168 (8%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V V L+ RL + F AV+ FQ GL G+ +T A Sbjct: 39 GSRGVDVTELQGRLRYVNYYH--GAIDGVFGWQTYWAVRNFQRDVGLRVDGIAGPATKAA 96 Query: 165 -MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + R Q + + +L + + V++ R Sbjct: 97 LVQRSRGYRPAPAQTSASPATGVGRFSARDIDLLTRVVYGEARGEPYTGQVAVAAVVLNR 156 Query: 224 VDRQTPILHSRINRIMFNPY----------WVIPRSIIQKDMMALLRQ 261 ++ P I ++F P W+ P S +K ++ +R Sbjct: 157 LE--DPRFPHTIPGVIFQPGAFTAVSDGQIWLTPDSEARKAVLDAIRG 202 >gi|295401784|ref|ZP_06811749.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294976151|gb|EFG51764.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 111 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 6/60 (10%) Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 A + + +H T P + GC+R+ N +I+L + T Sbjct: 50 NPGGAFGVLWLGLSRPH-YGIHGTNNPSSIGKN---VSRGCIRMYNHDVIELSSMVPVGT 105 >gi|302876620|ref|YP_003845253.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium cellulovorans 743B] gi|307687294|ref|ZP_07629740.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium cellulovorans 743B] gi|302579477|gb|ADL53489.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium cellulovorans 743B] Length = 339 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 8/82 (9%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + WP L G+S V+V L+ + + + F +AVK FQ Sbjct: 31 AAITWPT-----LQHGSSGVNVYALQ---YLLNNQSAGITVDGTFGPGTTTAVKNFQTSK 82 Query: 150 GLDPSGMVDSSTLEAMNVPVDL 171 GL G+V +T + V Sbjct: 83 GLTSDGIVGQNTWSKLCVTTQQ 104 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I+ + W +L + G+++ +V+ ++ L S + F + SAV FQ Sbjct: 88 GIVGQNTWSKLCVTT-QQGSNNNAVKAVQYLLK--NKYSLSLTVDGIFGSGTYSAVVAFQ 144 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRI 173 GL +G+VD +T + I Sbjct: 145 KAKGLTQNGIVDLNTWNYLIGSSSQVI 171 >gi|225571095|ref|ZP_03780112.1| hypothetical protein CLOHYLEM_07195 [Clostridium hylemonae DSM 15053] gi|225160176|gb|EEG72795.1| hypothetical protein CLOHYLEM_07195 [Clostridium hylemonae DSM 15053] Length = 262 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + L+ERL G + ++A+K +Q HGL G+V T Sbjct: 201 SRGNITALLQERLNALGY--NCGVVDGINGTKTQAAIKAYQRAHGLVADGIVGVKTWS 256 >gi|218900180|ref|YP_002448591.1| hypothetical protein BCG9842_B0072 [Bacillus cereus G9842] gi|228968143|ref|ZP_04129147.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar sotto str. T04001] gi|218542911|gb|ACK95305.1| conserved hypothetical protein [Bacillus cereus G9842] gi|228791578|gb|EEM39176.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar sotto str. T04001] Length = 153 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 38/167 (22%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ ++GK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQDGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGK---ATTLGCIRMYNND--IHWLFER 143 >gi|323136809|ref|ZP_08071890.1| Peptidoglycan-binding domain 1 protein [Methylocystis sp. ATCC 49242] gi|322398126|gb|EFY00647.1| Peptidoglycan-binding domain 1 protein [Methylocystis sp. ATCC 49242] Length = 155 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 19/151 (12%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLA--------RVDMGIDSDIPIISKETIAQTEKAI 82 I + + ++ +++ + + + + + + E A Sbjct: 6 IKLGSKGDAVKKAQRALIERYYLDPGMDDGVFGPVTLSKVLRYQLDRSATEFFAF--SFP 63 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERL--IISGDLDPSKGLSVAFDAYVES 140 I+ W L + G+ V+ L+ L + DP + F E+ Sbjct: 64 LKVDGIIGPATWFRLAPAEVKKGSKGAGVRLLQGILKSFAVPEYDPGA-VDGDFGPTTET 122 Query: 141 AVKLFQMRHG------LDPSGMVDSSTLEAM 165 AVK FQ L G+V + T A+ Sbjct: 123 AVKAFQADFFDFDGNPLKVDGIVGAKTWAAL 153 Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 24/147 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG----------L 151 + LG+ +V++ + LI LDP F S V +Q+ L Sbjct: 6 IKLGSKGDAVKKAQRALIERYYLDP-GMDDGVFGPVTLSKVLRYQLDRSATEFFAFSFPL 64 Query: 152 DPSGMVDSSTL--------EAMNVPVDLRIRQLQVN----LMRIKKLLEQKMGLRYVLVN 199 G++ +T + + +R+ Q + ++ G Sbjct: 65 KVDGIIGPATWFRLAPAEVKKGSKGAGVRLLQGILKSFAVPEYDPGAVDGDFGPTTETAV 124 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDR 226 + + L+ IVG Sbjct: 125 KA-FQADFFDFDGNPLKVDGIVGAKTW 150 >gi|158423984|ref|YP_001525276.1| hypothetical protein AZC_2360 [Azorhizobium caulinodans ORS 571] gi|158330873|dbj|BAF88358.1| hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 228 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 4/83 (4%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 + + + + K + + P+ G N + + + S +H Sbjct: 130 FQWSGVKTVSAKKEWPSWTPPEQMLKRRPDLPRYMPGGIENPLGARAMYLGSS-LYRIHG 188 Query: 326 TPEPILFNNVVRFETSGCVRVRN 348 + EP +SGC+R+ N Sbjct: 189 SNEPETIGQ---AVSSGCIRMTN 208 >gi|327190700|gb|EGE57782.1| hypothetical protein RHECNPAF_397006 [Rhizobium etli CNPAF512] Length = 244 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 44/199 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R + + ++V+ P+ L V+ + +R V +GR Sbjct: 79 PAVPYEEIDPRYYRQRVVDPTGQPPGTIVVDTPSRFLYLVQADGMAMRYGVGIGREGFA- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY-LKDNNIHMIDEKGKEVFVEEVD 287 I P W P +M+A + +Y + + + Sbjct: 138 WQGSGVIQWRQKWPRWKPP-----NEMVARQPELVKYSIDNGGME--------------- 177 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCV 344 PG N + + + F + + Y +H P+ +SGCV Sbjct: 178 --------------PGLKNPLGARALYIFSNGEDTLYRLHGNPDWRSIGK---AVSSGCV 220 Query: 345 RV--RNIIDLDVWLLKDTP 361 R+ ++IIDL + P Sbjct: 221 RLMNQDIIDLYDRVPTKAP 239 >gi|253998677|ref|YP_003050740.1| ErfK/YbiS/YcfS/YnhG family protein [Methylovorus sp. SIP3-4] gi|253985356|gb|ACT50213.1| ErfK/YbiS/YcfS/YnhG family protein [Methylovorus sp. SIP3-4] Length = 164 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 8/64 (12%) Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 N + + Y+H TP+ L + GCVR+RN +I L + TP W Sbjct: 103 NRLGQVD---SMQRYIYIHGTPDTELMGV---AASHGCVRMRNTDVIALFDLVPVGTPVW 156 Query: 364 SRYH 367 Sbjct: 157 LEDD 160 >gi|75760137|ref|ZP_00740197.1| Hypothetical exported protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903531|ref|ZP_04067654.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis IBL 4222] gi|74492374|gb|EAO55530.1| Hypothetical exported protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856107|gb|EEN00644.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis IBL 4222] Length = 153 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 37/167 (22%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ ++GK V G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQDGKFIKSFAVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGK---ATTLGCIRMYNND--IHWLFER 143 >gi|328543239|ref|YP_004303348.1| Lipoprotein [polymorphum gilvum SL003B-26A1] gi|326412985|gb|ADZ70048.1| Lipoprotein, putative [Polymorphum gilvum SL003B-26A1] Length = 176 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 61/197 (30%), Gaps = 45/197 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +R++ R ++V+ P L G LR V +GR D Sbjct: 13 PAVDLRKIDPRYYRQIVPYYSAEPTGTIIVDTPHRFLYLTMEGGQALRYGVGIGR-DGFA 71 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +RI P W P +I + Sbjct: 72 WGGTARIAYKREWPVWTPPTEMIAR----------------------------------- 96 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 PE + PG N + + + +R+ Y +H T E +SGCVR Sbjct: 97 -QPELEPYRNGMPPGLDNPLGARALYIFEGNRDTLYRLHGTSEFWSIGK---AVSSGCVR 152 Query: 346 V--RNIIDLDVWLLKDT 360 + +++IDL + T Sbjct: 153 LLHQDVIDLHDRVPNGT 169 >gi|300785514|ref|YP_003765805.1| muramoyl-pentapeptide carboxypeptidase [Amycolatopsis mediterranei U32] gi|299795028|gb|ADJ45403.1| putative muramoyl-pentapeptide carboxypeptidase [Amycolatopsis mediterranei U32] Length = 242 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLI---ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L G++ V L+ R+ + F + +AV+ FQ +GL Sbjct: 34 SRTLKEGSTGADVTELQIRVAGWAADHAAQSRVSIDGEFGSGTAAAVRRFQAAYGLGADA 93 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 V +T A+N + N Sbjct: 94 QVGPATQAALNALEQSDGSTVHFNFSEFT 122 >gi|194016960|ref|ZP_03055573.1| spore cortex-lytic enzyme [Bacillus pumilus ATCC 7061] gi|194011566|gb|EDW21135.1| spore cortex-lytic enzyme [Bacillus pumilus ATCC 7061] Length = 303 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 3/108 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ ++G+ Sbjct: 31 AFTSQVIQRGATGEDVVELQARLQYNGFY--NGKIDGVYGWGTYWAVRNFQSQYGVKKVD 88 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 G+V T + +Q L + + PA Sbjct: 89 GLVGKQTKSLLVQKTKYYKDFVQQQLQKGNEFTHYGGKPLDQQTKAPA 136 >gi|92118658|ref|YP_578387.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gi|91801552|gb|ABE63927.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 259 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 44/144 (30%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V+ LR V VG+ + P W P ++++ Sbjct: 141 LYLVQGDGKALRYGVGVGKPG-FLWAGVKTVTAKKEWPGWTPPAEMLKRR---------- 189 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 P+ + G N + + + S +H Sbjct: 190 -----------------------------PDLPRHMEGGPQNPLGARAMYLGSS-LYRIH 219 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 + EP +SGC+R+RN Sbjct: 220 GSNEPWTIGTN---VSSGCIRMRN 240 >gi|52140495|ref|YP_086333.1| hypothetical protein BCZK4762 [Bacillus cereus E33L] gi|51973964|gb|AAU15514.1| conserved hypothetical protein [Bacillus cereus E33L] Length = 153 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 39/169 (23%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFKIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFERIP 145 >gi|126726063|ref|ZP_01741905.1| Twin-arginine translocation pathway signal [Rhodobacterales bacterium HTCC2150] gi|126705267|gb|EBA04358.1| Twin-arginine translocation pathway signal [Rhodobacterales bacterium HTCC2150] Length = 184 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 53/188 (28%), Gaps = 45/188 (23%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L + + + + V+ L K +R +V VGR + Sbjct: 19 LNKAFLPKHVRMRADLPAGEMHVDPNTFKLYFTLGNKRAIRYSVGVGRPGLY-ESGTFTV 77 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 P W ++I ++DP + Sbjct: 78 GAKREWPRWTPTPAMI--------KRDPGSYARH-------------------------- 103 Query: 296 FIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRN--I 349 G N + + + + N +H T +P + ++GC R+ N + Sbjct: 104 -KDGMPGGPNNPLGARAMYLHDANGRDTMLRIHGTAQPWTIGS---AVSNGCARLTNEHV 159 Query: 350 IDLDVWLL 357 ++L ++ Sbjct: 160 VELYDQVM 167 >gi|326328746|ref|ZP_08195084.1| zinc D-Ala-D-Ala carboxypeptidase [Nocardioidaceae bacterium Broad-1] gi|325953489|gb|EGD45491.1| zinc D-Ala-D-Ala carboxypeptidase [Nocardioidaceae bacterium Broad-1] Length = 251 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S +V +L+ R+ + ++ +AV+ FQ +GL G+ Sbjct: 42 SGTLQQGSSGNAVTQLQIRVAGWAATGTIFSIDGSYGPATTTAVRNFQAAYGLAADGVAG 101 Query: 159 SSTLEAM 165 ++T + Sbjct: 102 TNTFNKL 108 >gi|323135569|ref|ZP_08070652.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylocystis sp. ATCC 49242] gi|322398660|gb|EFY01179.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylocystis sp. ATCC 49242] Length = 454 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 8/77 (10%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P L G V +L+ RL G G +D + V FQ Sbjct: 373 GRWLAPAPPDDGPALEPGAGGPDVAQLQRRLADFGYKMVETG---VYDEDTAATVAAFQR 429 Query: 148 RHG-LDPSGMVDSSTLE 163 G D+STL+ Sbjct: 430 HFRPARVDGRADASTLD 446 >gi|254382818|ref|ZP_04998174.1| hypothetical protein SSAG_02477 [Streptomyces sp. Mg1] gi|194341719|gb|EDX22685.1| hypothetical protein SSAG_02477 [Streptomyces sp. Mg1] Length = 368 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--G 155 P + L G+S V+RL+ L + + +D E+AV FQ RH + G Sbjct: 299 PAQSLQYGDSGAEVERLQRLLASARLY--RGKFNGMYDDRTENAVSEFQWRHEIFDDPWG 356 Query: 156 MVDSSTLEAMN 166 + +T +A+ Sbjct: 357 VYGPATRKALE 367 >gi|23752338|ref|NP_705653.1| gp27 [Burkholderia phage Bcep781] gi|47842850|ref|NP_958132.2| gp27 [Burkholderia phage Bcep43] gi|23507205|gb|AAN38028.1| gp27 [Burkholderia phage Bcep781] gi|47719038|gb|AAR89318.2| gp27 [Burkholderia phage Bcep43] Length = 255 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 8/63 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G S +V L+ RL + S FDA V +A++ +Q HG+ P G+ Sbjct: 2 AAPLIVGASGRAVVFLQARLGL--------AQSGQFDASVATALRQWQEAHGMTPDGVYG 53 Query: 159 SST 161 S T Sbjct: 54 SQT 56 >gi|323701623|ref|ZP_08113295.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum nigrificans DSM 574] gi|323533396|gb|EGB23263.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum nigrificans DSM 574] Length = 193 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 6/62 (9%) Query: 303 GKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 + + + +H T P N + GC+R+ N + +L + Sbjct: 58 NPGGVLGTRWMGLNIPGGNYGIHGTNNPSSIGNR---VSLGCIRMHNSHVEELFPQIPIG 114 Query: 360 TP 361 TP Sbjct: 115 TP 116 >gi|148257875|ref|YP_001242460.1| hypothetical protein BBta_6654 [Bradyrhizobium sp. BTAi1] gi|146410048|gb|ABQ38554.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 190 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 50/181 (27%), Gaps = 46/181 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + + ++V+ L V LR + VGR D RI Sbjct: 48 RETVMFQGQYAPGTIVVSTSERRLYLVLGNGQALRYGIGVGR-DGFRWSGVHRITAKKEW 106 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 107 PAWTPPAQMLRRR---------------------------------------PDLPRHMA 127 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 G N + + + +H + EP +SGC R+ N + DL + Sbjct: 128 GGIENPLGARAMYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTNEDVADLYDRVAVG 183 Query: 360 T 360 T Sbjct: 184 T 184 >gi|253575916|ref|ZP_04853250.1| carboxyl-terminal protease [Paenibacillus sp. oral taxon 786 str. D14] gi|251844710|gb|EES72724.1| carboxyl-terminal protease [Paenibacillus sp. oral taxon 786 str. D14] Length = 483 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + ++ + L G FD E A+K FQ L + Sbjct: 385 PINKEKTYKYDMLGEDIKSAQTMLDGLGY--NPGRKDGYFDKNTEKALKKFQTDQKLTAN 442 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 G++D+ T EA+ + +IR + ++ + L Sbjct: 443 GVLDAKTAEALEASIIQQIRDPKNDMQLNRAL 474 >gi|154499164|ref|ZP_02037542.1| hypothetical protein BACCAP_03159 [Bacteroides capillosus ATCC 29799] gi|150272004|gb|EDM99230.1| hypothetical protein BACCAP_03159 [Bacteroides capillosus ATCC 29799] Length = 367 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL---- 162 S +++L+ + ++G + Y E AV+ FQ GL SG+VD +TL Sbjct: 28 KSEDIKQLQRAIYMAGFWSSPSEPDGVYGIYTECAVRGFQYEKGLQTSGVVDKATLSKLE 87 Query: 163 EAMNVPVDLRIRQLQVNLMR 182 R + + +R Sbjct: 88 AWSGTLSATRSKSPALTYIR 107 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + ++R LI G + + F+A + VK FQ GL G V TL Sbjct: 116 GDIGAAPTQIRGLLIKKGY---NCASTGPFNAELVGVVKKFQKDSGLTQDGSVGQVTLAV 172 Query: 165 MNVPVDL 171 + V Sbjct: 173 LENTVSD 179 >gi|269967430|ref|ZP_06181490.1| putative general secretion pathway protein A [Vibrio alginolyticus 40B] gi|269828018|gb|EEZ82292.1| putative general secretion pathway protein A [Vibrio alginolyticus 40B] Length = 538 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L L + + + FD ++ V+LFQ G+ Sbjct: 450 WHAPLNETLRLDMEGPAIEVLDRLLAEA--VSEPLLETSIFDGAMKERVELFQRWQGIGV 507 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TL+ + V QL Sbjct: 508 DGIAGKRTLDRLQQNVQPDAPQLA 531 >gi|220927494|ref|YP_002504403.1| spore cortex-lytic enzyme [Clostridium cellulolyticum H10] gi|219997822|gb|ACL74423.1| spore cortex-lytic enzyme [Clostridium cellulolyticum H10] Length = 231 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V+ +++ L G D + + F +V +Q ++GL +G+ Sbjct: 30 SAPSLKIGDRGEEVKDMQQELKNWGYFDGN--VDGRFGYDTLRSVLSYQRQYGLKANGIA 87 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 D +TL + + + I N + +++ Sbjct: 88 DRTTL--LTMGLAELIESGTANAAATSNISNEQL 119 >gi|325912856|ref|ZP_08175234.1| peptidase, S41 family [Lactobacillus iners UPII 60-B] gi|325477849|gb|EGC80983.1| peptidase, S41 family [Lactobacillus iners UPII 60-B] Length = 460 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAMNVPV 169 A+ V Sbjct: 434 RYALYVAA 441 >gi|325911993|ref|ZP_08174395.1| peptidase, S41 family [Lactobacillus iners UPII 143-D] gi|325476178|gb|EGC79342.1| peptidase, S41 family [Lactobacillus iners UPII 143-D] Length = 460 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAMNVPV 169 A+ V Sbjct: 434 RYALYVAA 441 >gi|315653518|ref|ZP_07906439.1| carboxy-terminal processing protease CtpA [Lactobacillus iners ATCC 55195] gi|315489209|gb|EFU78850.1| carboxy-terminal processing protease CtpA [Lactobacillus iners ATCC 55195] Length = 460 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAMNVPV 169 A+ V Sbjct: 434 RYALYVAA 441 >gi|312873993|ref|ZP_07734029.1| peptidase, S41 family [Lactobacillus iners LEAF 2052A-d] gi|311090542|gb|EFQ48950.1| peptidase, S41 family [Lactobacillus iners LEAF 2052A-d] Length = 460 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAMNVPV 169 A+ V Sbjct: 434 RYALYVAA 441 >gi|312875468|ref|ZP_07735471.1| peptidase, S41 family [Lactobacillus iners LEAF 2053A-b] gi|311088979|gb|EFQ47420.1| peptidase, S41 family [Lactobacillus iners LEAF 2053A-b] Length = 460 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAMNVPV 169 A+ V Sbjct: 434 RYALYVAA 441 >gi|309807519|ref|ZP_07701476.1| peptidase, S41 family [Lactobacillus iners LactinV 01V1-a] gi|308169246|gb|EFO71307.1| peptidase, S41 family [Lactobacillus iners LactinV 01V1-a] Length = 431 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 347 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 404 Query: 162 LEAMNVPV 169 A+ V Sbjct: 405 RYALYVAA 412 >gi|309806746|ref|ZP_07700740.1| peptidase, S41 family [Lactobacillus iners LactinV 03V1-b] gi|308166861|gb|EFO69046.1| peptidase, S41 family [Lactobacillus iners LactinV 03V1-b] Length = 431 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 347 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 404 Query: 162 LEAMNVPV 169 A+ V Sbjct: 405 RYALYVAA 412 >gi|309805739|ref|ZP_07699779.1| peptidase, S41 family [Lactobacillus iners LactinV 09V1-c] gi|308164992|gb|EFO67235.1| peptidase, S41 family [Lactobacillus iners LactinV 09V1-c] Length = 399 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 315 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 372 Query: 162 LEAMNVPV 169 A+ V Sbjct: 373 RYALYVAA 380 >gi|309804179|ref|ZP_07698257.1| peptidase, S41 family [Lactobacillus iners LactinV 11V1-d] gi|309809279|ref|ZP_07703148.1| peptidase, S41 family [Lactobacillus iners SPIN 2503V10-D] gi|329921343|ref|ZP_08277781.1| peptidase, S41 family [Lactobacillus iners SPIN 1401G] gi|308163762|gb|EFO66031.1| peptidase, S41 family [Lactobacillus iners LactinV 11V1-d] gi|308170392|gb|EFO72416.1| peptidase, S41 family [Lactobacillus iners SPIN 2503V10-D] gi|328934635|gb|EGG31139.1| peptidase, S41 family [Lactobacillus iners SPIN 1401G] Length = 460 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAMNVPV 169 A+ V Sbjct: 434 RYALYVAA 441 >gi|259500647|ref|ZP_05743549.1| carboxy-terminal processing protease CtpA [Lactobacillus iners DSM 13335] gi|302191336|ref|ZP_07267590.1| hypothetical protein LineA_04932 [Lactobacillus iners AB-1] gi|259168031|gb|EEW52526.1| carboxy-terminal processing protease CtpA [Lactobacillus iners DSM 13335] Length = 460 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAMNVPV 169 A+ V Sbjct: 434 RYALYVAA 441 >gi|90411905|ref|ZP_01219913.1| putative general secretion pathway protein A [Photobacterium profundum 3TCK] gi|90327163|gb|EAS43535.1| putative general secretion pathway protein A [Photobacterium profundum 3TCK] Length = 521 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G V L ++L L ++ S F V ++ FQ L G+ Sbjct: 440 SKTTIRYGQQGPRVAWLSQQLNS--FLGETQTHSDYFGQSVLDKLRRFQRSQDLAADGIA 497 Query: 158 DSSTL 162 TL Sbjct: 498 GPLTL 502 >gi|89097834|ref|ZP_01170721.1| hypothetical protein B14911_22882 [Bacillus sp. NRRL B-14911] gi|89087336|gb|EAR66450.1| hypothetical protein B14911_22882 [Bacillus sp. NRRL B-14911] Length = 496 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L + +SS V+ +E L G FD + AV Q H L+ +G++ Sbjct: 404 PESELKVSSSSAEVKAAQEMLKALGF--EPGRTDGFFDEKTKQAVIQLQKAHKLEQTGVI 461 Query: 158 DSST 161 T Sbjct: 462 TGDT 465 >gi|297617789|ref|YP_003702948.1| peptidoglycan-binding lysin domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145626|gb|ADI02383.1| Peptidoglycan-binding lysin domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 381 Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 17/143 (11%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + E + + + + ++ I +T++ A Q ++ Sbjct: 45 DLALGTYGEDVRQVQQCLSHLNYNTGGIDG---------IYGPQTVSAV-SAFQKDQQLV 94 Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G L V +L++ L G +KG+ F SAV FQ + Sbjct: 95 VDGIAGPETQWALF-----KIVSQLQKDLTFVGF--DTKGVDGCFGPATVSAVLSFQTAN 147 Query: 150 GLDPSGMVDSSTLEAMNVPVDLR 172 L G+V T +A+ V + Sbjct: 148 KLKADGIVGPETKKALEQAVAAK 170 >gi|283470634|emb|CAQ49845.1| carboxy-processing protease [Staphylococcus aureus subsp. aureus ST398] Length = 496 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|258422547|ref|ZP_05685455.1| carboxyl-terminal protease [Staphylococcus aureus A9635] gi|257847304|gb|EEV71310.1| carboxyl-terminal protease [Staphylococcus aureus A9635] Length = 496 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|160876018|ref|YP_001555334.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS195] gi|160861540|gb|ABX50074.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS195] Length = 273 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L++RL +G S + F + A++ FQ + L +G Sbjct: 2 TLKKGSNGSQVRDLQQRLNAAG---ASLTVDGWFGDATQKAIEQFQDKQDLPRTGYAGVR 58 Query: 161 TLE 163 TL Sbjct: 59 TLA 61 >gi|148267907|ref|YP_001246850.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus JH9] gi|150393970|ref|YP_001316645.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus JH1] gi|253315257|ref|ZP_04838470.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733333|ref|ZP_04867498.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus TCH130] gi|257795525|ref|ZP_05644504.1| carboxyl-terminal protease [Staphylococcus aureus A9781] gi|258413333|ref|ZP_05681609.1| carboxyl-terminal protease [Staphylococcus aureus A9763] gi|258420560|ref|ZP_05683502.1| carboxyl-terminal protease [Staphylococcus aureus A9719] gi|258434668|ref|ZP_05688742.1| carboxyl-terminal protease [Staphylococcus aureus A9299] gi|258444756|ref|ZP_05693085.1| carboxyl-terminal protease [Staphylococcus aureus A8115] gi|258447410|ref|ZP_05695554.1| carboxyl-terminal protease [Staphylococcus aureus A6300] gi|258449251|ref|ZP_05697354.1| carboxyl-terminal protease [Staphylococcus aureus A6224] gi|258454630|ref|ZP_05702594.1| carboxyl-terminal protease [Staphylococcus aureus A5937] gi|269203042|ref|YP_003282311.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus ED98] gi|282892915|ref|ZP_06301150.1| carboxyl-terminal processing protease [Staphylococcus aureus A8117] gi|282927946|ref|ZP_06335555.1| carboxyl-terminal processing protease [Staphylococcus aureus A10102] gi|295406366|ref|ZP_06816173.1| carboxyl-terminal processing protease [Staphylococcus aureus A8819] gi|296275280|ref|ZP_06857787.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus MR1] gi|297244595|ref|ZP_06928478.1| carboxyl-terminal processing protease [Staphylococcus aureus A8796] gi|147740976|gb|ABQ49274.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus JH9] gi|149946422|gb|ABR52358.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus JH1] gi|253728685|gb|EES97414.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus TCH130] gi|257789497|gb|EEV27837.1| carboxyl-terminal protease [Staphylococcus aureus A9781] gi|257839897|gb|EEV64365.1| carboxyl-terminal protease [Staphylococcus aureus A9763] gi|257843508|gb|EEV67915.1| carboxyl-terminal protease [Staphylococcus aureus A9719] gi|257849029|gb|EEV73011.1| carboxyl-terminal protease [Staphylococcus aureus A9299] gi|257850249|gb|EEV74202.1| carboxyl-terminal protease [Staphylococcus aureus A8115] gi|257853601|gb|EEV76560.1| carboxyl-terminal protease [Staphylococcus aureus A6300] gi|257857239|gb|EEV80137.1| carboxyl-terminal protease [Staphylococcus aureus A6224] gi|257863013|gb|EEV85777.1| carboxyl-terminal protease [Staphylococcus aureus A5937] gi|262075332|gb|ACY11305.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus ED98] gi|282590243|gb|EFB95323.1| carboxyl-terminal processing protease [Staphylococcus aureus A10102] gi|282764912|gb|EFC05037.1| carboxyl-terminal processing protease [Staphylococcus aureus A8117] gi|285817098|gb|ADC37585.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus aureus 04-02981] gi|294968954|gb|EFG44976.1| carboxyl-terminal processing protease [Staphylococcus aureus A8819] gi|297178625|gb|EFH37871.1| carboxyl-terminal processing protease [Staphylococcus aureus A8796] gi|312829814|emb|CBX34656.1| C-terminal processing peptidase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129129|gb|EFT85124.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus CGS03] gi|329727143|gb|EGG63599.1| peptidase, S41 family [Staphylococcus aureus subsp. aureus 21172] Length = 496 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|15924410|ref|NP_371944.1| carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu50] gi|15927001|ref|NP_374534.1| carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus N315] gi|156979739|ref|YP_001441998.1| carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu3] gi|255006209|ref|ZP_05144810.2| carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|81705698|sp|Q7A5M9|CTPAL_STAAN RecName: Full=Probable CtpA-like serine protease gi|81781605|sp|Q99U67|CTPAL_STAAM RecName: Full=Probable CtpA-like serine protease gi|13701218|dbj|BAB42513.1| probable carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus N315] gi|14247191|dbj|BAB57582.1| probable carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu50] gi|156721874|dbj|BAF78291.1| probable carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu3] Length = 496 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|312126439|ref|YP_003991313.1| carboxyl-terminal protease [Caldicellulosiruptor hydrothermalis 108] gi|311776458|gb|ADQ05944.1| carboxyl-terminal protease [Caldicellulosiruptor hydrothermalis 108] Length = 472 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + V ++RL G L D +AVK FQ L PSG++ Sbjct: 380 ATKKFKKGDMDLEVLAAQQRLFYLGYLSNWTA---KMDDSTVAAVKKFQKDTKLYPSGVL 436 Query: 158 DSSTLEAMNVPVDL 171 D +T + +N Sbjct: 437 DITTQKKLNEKFSE 450 >gi|229014219|ref|ZP_04171340.1| ErfK/YbiS/YcfS/YnhG [Bacillus mycoides DSM 2048] gi|228747173|gb|EEL97055.1| ErfK/YbiS/YcfS/YnhG [Bacillus mycoides DSM 2048] Length = 153 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 38/167 (22%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ ++GK TV G+ TP +I + N + I D Sbjct: 32 IVNTKINKMDYYQDGKFIKSFTVATGKASTPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGK---ATTLGCIRMFNND--IHWLFER 143 >gi|229076415|ref|ZP_04209379.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock4-18] gi|229099487|ref|ZP_04230415.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock3-29] gi|229105645|ref|ZP_04236278.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock3-28] gi|229118505|ref|ZP_04247859.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock1-3] gi|228665075|gb|EEL20563.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock1-3] gi|228677781|gb|EEL32025.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock3-28] gi|228683783|gb|EEL37733.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock3-29] gi|228706702|gb|EEL58911.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock4-18] Length = 153 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 38/167 (22%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGK---ATTLGCIRMFNND--IHWLFER 143 >gi|52787273|ref|YP_093102.1| petidoglycan binding protein [Bacillus licheniformis ATCC 14580] gi|319647802|ref|ZP_08002020.1| hypothetical protein HMPREF1012_03059 [Bacillus sp. BT1B_CT2] gi|52349775|gb|AAU42409.1| putative petidoglycan binding protein, contains PG_binding_1 domain [Bacillus licheniformis ATCC 14580] gi|317390143|gb|EFV70952.1| hypothetical protein HMPREF1012_03059 [Bacillus sp. BT1B_CT2] Length = 69 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%) Query: 106 NSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +V++++E L + G+ + +AVK FQ H L G+ T Sbjct: 1 MKGTAVRQIQEALAALYFYPDKGAKNNGIGGYYGPKTANAVKRFQHMHRLSADGIYGPKT 60 Query: 162 LEAMN 166 + Sbjct: 61 KAKLE 65 >gi|254500010|ref|ZP_05112163.1| ErfK/YbiS/YcfS/YnhG superfamily [Labrenzia alexandrii DFL-11] gi|222441477|gb|EEE48154.1| ErfK/YbiS/YcfS/YnhG superfamily [Labrenzia alexandrii DFL-11] Length = 167 Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 8/74 (10%) Query: 292 EPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 + + G N + S + R+ Y +H T EP R ++GCVR+ N Sbjct: 92 KYRKYANGVPGGPNNPLGSRALYLYRNGRDTMYRIHGTTEPSSIG---RSVSNGCVRMIN 148 Query: 349 I--IDLDVWLLKDT 360 DL + T Sbjct: 149 AHVEDLYERVPLGT 162 >gi|229179581|ref|ZP_04306933.1| Peptidoglycan-binding domain 1 protein [Bacillus cereus 172560W] gi|228603875|gb|EEK61344.1| Peptidoglycan-binding domain 1 protein [Bacillus cereus 172560W] Length = 571 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 8/96 (8%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGL 130 E +A + ++ P + L G+ +++V+ +++ L I D P + Sbjct: 334 YYKDIEVRLAEFIQVVK-----SFPGKILKEGDQNLAVETIQKYLYHIRKRYTDIPEVRV 388 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + +++ +AVK FQ + L +G VD T MN Sbjct: 389 NGTYNSSTANAVKAFQRQFQLPENGAVDEVTWNKMN 424 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+RL+ L G L F E +VK FQ +G+V Sbjct: 440 LQNGSQGELVRRLQNLLKDYGFY--EGQLDGFFGLGTEVSVKEFQKIKSFTVTGVVRKEL 497 Query: 162 L 162 Sbjct: 498 W 498 >gi|224162231|ref|XP_002338425.1| predicted protein [Populus trichocarpa] gi|222872207|gb|EEF09338.1| predicted protein [Populus trichocarpa] Length = 304 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + + L++ L G ++ FD +ESA+K +Q L+ +G++D ST Sbjct: 47 RKGQTVEGLVELKQYLKRFGYYPSDVNLMTSDFDDLLESALKTYQNYFHLNVTGILDDST 106 Query: 162 LEAMNVP 168 ++ M +P Sbjct: 107 IKQMMIP 113 >gi|118488262|gb|ABK95950.1| unknown [Populus trichocarpa] Length = 304 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + + L++ L G ++ FD +ESA+K +Q L+ +G++D ST Sbjct: 47 RKGQTVEGLVELKQYLKRFGYYPSDVNLMTSDFDDLLESALKTYQNYFHLNVTGILDDST 106 Query: 162 LEAMNVP 168 ++ M +P Sbjct: 107 IKQMMIP 113 >gi|282899460|ref|ZP_06307426.1| hypothetical protein CRC_00907 [Cylindrospermopsis raciborskii CS-505] gi|281195617|gb|EFA70548.1| hypothetical protein CRC_00907 [Cylindrospermopsis raciborskii CS-505] Length = 313 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S ++ L+ R + E+A+K FQ ++GL G++ +T Sbjct: 261 SGPIMRYLQYR--------VGTTPDGIYGRQTEAAIKRFQQQNGLTADGIIGPATW 308 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Query: 89 LSRGGWPELPIRPLHL-----GNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVES 140 + +G +LP P+ G+ S+ RL++ L D + S Sbjct: 162 IVKGLTGKLPTAPVKPVEDVTGDKDTSILRLQKALNQLKITDRNNRPLTEDNFTGPATSS 221 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 AV+ FQ G+ P+GM +T +A+N + R Q Sbjct: 222 AVEKFQRVVGIIPTGMATQTTWDAINQILAKRTVQ 256 >gi|228919597|ref|ZP_04082959.1| hypothetical protein bthur0011_6210 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839951|gb|EEM85230.1| hypothetical protein bthur0011_6210 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 219 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 12/93 (12%) Query: 264 QYLKDNNIH--MIDEKGKEVFVEEVD----WNSPEPPNFIFRQDPG--KINAMASTKIEF 315 + ++ N G+E + + ++ PG N + + + Sbjct: 2 SFFENGNYTKTFPVTTGRERTPTPEGNFCIITKFKNKEYHRKKIPGGAPNNPLGTRWLGL 61 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 62 -DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 90 >gi|288921937|ref|ZP_06416148.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] gi|288346695|gb|EFC81013.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] Length = 300 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 21/89 (23%), Gaps = 16/89 (17%) Query: 300 QDPGKINAMASTKIEFY------SRNN-----TYMHDTPEPILFNNVVRFETSGCVRVRN 348 + A +H T +P R + GC+R+ N Sbjct: 189 RPSNPNGAYGPYAFGLSGFSTSLDDFGGRDPVIGIHGTNDPSSLG---RDVSHGCIRLSN 245 Query: 349 --IIDLDVWLLKDTPTWSRYHIEEVVKTR 375 I L + TP T Sbjct: 246 DSITRLAQTVPLGTPVEIVAGPSAPRATG 274 >gi|188579646|ref|YP_001923091.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179343144|gb|ACB78556.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 307 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 39/180 (21%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +R + ++V+ A L V R V VG+ + ++ IN Sbjct: 150 FLRQEVDFRTNEPPGTIVVDPKAHFLYLVLPNGRARRYGVGVGKQG-FSWSGNATINSKQ 208 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P+ +I + L ++ L+ Sbjct: 209 AWPDWYPPKEMIARR--PDLAREVDKLQSG----------------------------LG 238 Query: 300 QDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 G N + + + + +++ + +H T EP +SGC+R+ ++ IDL Sbjct: 239 VPGGSRNPLGARAMYLWQNNKDTLFRIHGTLEPHSIGKS---VSSGCIRMINQDAIDLFN 295 >gi|149912914|ref|ZP_01901448.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. AzwK-3b] gi|149813320|gb|EDM73146.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. AzwK-3b] Length = 200 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 47/173 (27%) Query: 179 NLMRIKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRIN 236 + + + +LV+I + +L E+G+ V + T +R+ Sbjct: 53 SFRSLDWQPYFSNLNNGAILVDISSRALHYWSEDGQTYKLYPSSVPLSEDLTRRGRTRVT 112 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 + + P W S+ L+++P DW Sbjct: 113 QKVEGPSWRPTPSM--------LKRNP-----------------------DW-------- 133 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + Y +H T + R ++GC+ + N Sbjct: 134 PPFVPPGPDNPLGTHALYLS--WTYYRIHGTHDTRKIG---RRSSNGCIGLYN 181 >gi|56963703|ref|YP_175434.1| cell wall lytic activity [Bacillus clausii KSM-K16] gi|56909946|dbj|BAD64473.1| cell wall lytic activity [Bacillus clausii KSM-K16] Length = 307 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 8/66 (12%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G+ + +V+ ++ +L I F E V+ FQ +GL G+V + Sbjct: 70 TVRFGDRNETVREVQAKLGI--------PADGIFGPQTEKEVREFQANNGLAADGIVGPA 121 Query: 161 TLEAMN 166 T +A++ Sbjct: 122 TKKALD 127 >gi|146279925|ref|YP_001170083.1| hypothetical protein Rsph17025_3924 [Rhodobacter sphaeroides ATCC 17025] gi|145558166|gb|ABP72778.1| hypothetical protein Rsph17025_3924 [Rhodobacter sphaeroides ATCC 17025] Length = 184 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 55/220 (25%) Query: 142 VKLFQMRHGL-----DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +K F RH L G++ + A+ V+ R + + ++G + Sbjct: 1 MKSFNRRHALGLGIAAAGGLLLP--MPAIARTVN-RANISSFTMQSWEDHF-DRLGKGAI 56 Query: 197 LVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + + + +L +G+ V + T ++ I R P W S +++ Sbjct: 57 VADTTSRALHFWSGDGQEYRVYPTSVPMSEELTKRGYTEIVRKKVGPSWTPTPSQMERYP 116 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 DW PG N + + + Sbjct: 117 -------------------------------DWKPIG---------PGPENPLGTHAMYL 136 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +H T + R + GC+ + N + Sbjct: 137 GWPAYI-IHGTHDTRKIG---RPSSDGCIGLYN-EKIAEL 171 >gi|30265076|ref|NP_847453.1| hypothetical protein BA_5274 [Bacillus anthracis str. Ames] gi|47530582|ref|YP_021931.1| hypothetical protein GBAA_5274 [Bacillus anthracis str. 'Ames Ancestor'] gi|49187887|ref|YP_031140.1| hypothetical protein BAS4899 [Bacillus anthracis str. Sterne] gi|65317021|ref|ZP_00389980.1| COG1376: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012] gi|165870855|ref|ZP_02215507.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167634891|ref|ZP_02393209.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167639936|ref|ZP_02398204.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170685620|ref|ZP_02876843.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170706950|ref|ZP_02897407.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177652266|ref|ZP_02934769.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190567289|ref|ZP_03020204.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|196032930|ref|ZP_03100343.1| conserved hypothetical protein [Bacillus cereus W] gi|218906231|ref|YP_002454065.1| hypothetical protein BCAH820_5143 [Bacillus cereus AH820] gi|227817806|ref|YP_002817815.1| hypothetical protein BAMEG_5327 [Bacillus anthracis str. CDC 684] gi|228917666|ref|ZP_04081207.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930062|ref|ZP_04093072.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948763|ref|ZP_04111040.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124572|ref|ZP_04253757.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus 95/8201] gi|229604331|ref|YP_002869273.1| hypothetical protein BAA_5305 [Bacillus anthracis str. A0248] gi|254687367|ref|ZP_05151224.1| hypothetical protein BantC_26468 [Bacillus anthracis str. CNEVA-9066] gi|254725380|ref|ZP_05187163.1| hypothetical protein BantA1_23447 [Bacillus anthracis str. A1055] gi|254733724|ref|ZP_05191440.1| hypothetical protein BantWNA_00962 [Bacillus anthracis str. Western North America USA6153] gi|254740562|ref|ZP_05198253.1| hypothetical protein BantKB_06020 [Bacillus anthracis str. Kruger B] gi|254753176|ref|ZP_05205212.1| hypothetical protein BantV_11921 [Bacillus anthracis str. Vollum] gi|254761519|ref|ZP_05213540.1| hypothetical protein BantA9_24659 [Bacillus anthracis str. Australia 94] gi|30259753|gb|AAP28939.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47505730|gb|AAT34406.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181814|gb|AAT57190.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164713364|gb|EDR18889.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167512017|gb|EDR87395.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167529641|gb|EDR92390.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170128053|gb|EDS96923.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170670084|gb|EDT20824.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172082272|gb|EDT67338.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190561793|gb|EDV15763.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|195994359|gb|EDX58314.1| conserved hypothetical protein [Bacillus cereus W] gi|218535206|gb|ACK87604.1| conserved hypothetical protein [Bacillus cereus AH820] gi|227003111|gb|ACP12854.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|228658912|gb|EEL14567.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus 95/8201] gi|228810895|gb|EEM57239.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829561|gb|EEM75188.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841903|gb|EEM87009.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268739|gb|ACQ50376.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 153 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 38/169 (22%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFKIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWTTL---GCIRMYNND--IHWLFERIP 145 >gi|170741150|ref|YP_001769805.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168195424|gb|ACA17371.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 168 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 50/185 (27%), Gaps = 47/185 (25%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R E + ++V L V +R + VG+ +Q + + Sbjct: 23 TAREIVAFEADVSPGSIVVRTSERRLYFVNGDGTAIRYPIAVGKSGKQ-WTGLAHVEGKY 81 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P + + + P Sbjct: 82 VQPAWSPPWEVKR---------------------------------------DNPRLPNV 102 Query: 300 QDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 G N M + + +H T P F + GC+R+ ++++DL + Sbjct: 103 IAGGSPRNPMGAAALTLDRGE-YAIHGTNRPSSIGT---FASYGCIRMYNQDVVDLFGRV 158 Query: 357 LKDTP 361 TP Sbjct: 159 AVGTP 163 >gi|90421588|ref|YP_529958.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90103602|gb|ABD85639.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 171 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 44/163 (26%), Gaps = 45/163 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++V L + + + +R V VG+V +Q ++I+ P W Sbjct: 32 YSGDYSPGTIVVKTHERRLYLILDDRTAVRYPVGVGKVGKQ-WAGATKIDGKYREPAWAP 90 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KI 305 P + + + PN G Sbjct: 91 PADVKR---------------------------------------DNPNIPDVIPGGSPA 111 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N M + +H T P F + GCVR+ N Sbjct: 112 NPMGVAAMTLAGGE-YAIHGTNRPASIG---GFVSYGCVRMYN 150 >gi|225867017|ref|YP_002752395.1| hypothetical protein BCA_5180 [Bacillus cereus 03BB102] gi|225787277|gb|ACO27494.1| conserved hypothetical protein [Bacillus cereus 03BB102] Length = 153 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 39/169 (23%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKASTPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFERIP 145 >gi|225387902|ref|ZP_03757666.1| hypothetical protein CLOSTASPAR_01672 [Clostridium asparagiforme DSM 15981] gi|225046029|gb|EEG56275.1| hypothetical protein CLOSTASPAR_01672 [Clostridium asparagiforme DSM 15981] Length = 416 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S VQ+++E+L I + P + AV+ FQ GL + Sbjct: 332 PGYDLTVGSSGPKVQQMQEQLDTIATVYSAIPRVNPDGIYGERTAEAVREFQSIFGLPQT 391 Query: 155 GMVDSSTLEAMN 166 G+V+ +T ++ Sbjct: 392 GVVNFATWYKIS 403 >gi|49480365|ref|YP_039052.1| hypothetical protein BT9727_4743 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118480118|ref|YP_897269.1| hypothetical protein BALH_4569 [Bacillus thuringiensis str. Al Hakam] gi|229187279|ref|ZP_04314424.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BGSC 6E1] gi|49331921|gb|AAT62567.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118419343|gb|ABK87762.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|228596289|gb|EEK53964.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BGSC 6E1] Length = 153 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 39/169 (23%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKASTPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFERIP 145 >gi|297610914|ref|NP_001065361.2| Os10g0557900 [Oryza sativa Japonica Group] gi|14165321|gb|AAK55453.1|AC069300_8 putative metalloproteinase [Oryza sativa Japonica Group] gi|31433475|gb|AAP54980.1| Matrixin family protein, expressed [Oryza sativa Japonica Group] gi|255679626|dbj|BAF27198.2| Os10g0557900 [Oryza sativa Japonica Group] Length = 355 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L+ L G + + AFD ++E AV+ +Q R L +G +D++TL+ Sbjct: 48 GSHVTGLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTRFSLPVTGRLDNATLD 107 Query: 164 AMNVP 168 + P Sbjct: 108 QIMSP 112 >gi|167759667|ref|ZP_02431794.1| hypothetical protein CLOSCI_02026 [Clostridium scindens ATCC 35704] gi|167662698|gb|EDS06828.1| hypothetical protein CLOSCI_02026 [Clostridium scindens ATCC 35704] Length = 421 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L +I+G + + ++V+ FQ GL + Sbjct: 337 PGYTLEIGSSGSKVRQMQEQLNVIAGSYPALPKINADGIYGPATAASVEKFQSIFGLPQT 396 Query: 155 GMVDSSTLEAMN 166 G VD T ++ Sbjct: 397 GTVDYRTWYKIS 408 >gi|166031490|ref|ZP_02234319.1| hypothetical protein DORFOR_01187 [Dorea formicigenerans ATCC 27755] gi|166028895|gb|EDR47652.1| hypothetical protein DORFOR_01187 [Dorea formicigenerans ATCC 27755] Length = 287 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + ++E+L + + F ++AV FQ HGL G+V +T Sbjct: 230 RKGARGNITRLIQEKLGV--------AVDGIFGQKTKNAVIAFQRAHGLIADGIVGKNTW 281 Query: 163 EAM 165 A+ Sbjct: 282 RAL 284 >gi|116249009|ref|YP_764850.1| ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253659|emb|CAK12052.1| conserved hypothetical ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 226 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 19/199 (9%) Query: 202 AASLEAVENG---------KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 + AV+NG K+ + V + PI ++ Y ++ Sbjct: 34 NFTGTAVDNGVTFQRTNFAKIDKKWQRRVVKYFSSEPIGTVVVDTRHHFLYVIMENKTAI 93 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 + + + R+ ++ I + + P F N + Sbjct: 94 RYGVGVGREGFKWFGRATIDAKSLWPRWTPPP--EMRKRHPELPEFVAGGSPKNPLGPRA 151 Query: 313 IEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + + H T EP +SGC+R+ N +D L + P + + Sbjct: 152 MYLHRDGVDTGYRFHGTVEPWSIGKD---ASSGCIRMFNEDAID--LYQRCPIGTAVQVL 206 Query: 370 EVVKTRKTTPVKLATEVPV 388 + + + +++ PV Sbjct: 207 PHIADQAESAAQVSQTTPV 225 >gi|313903373|ref|ZP_07836765.1| ErfK/YbiS/YcfS/YnhG family protein [Thermaerobacter subterraneus DSM 13965] gi|313466461|gb|EFR61983.1| ErfK/YbiS/YcfS/YnhG family protein [Thermaerobacter subterraneus DSM 13965] Length = 248 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 10/72 (13%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVV 336 G+ V + + +H T P Sbjct: 90 GRPGEPSPVGEWRVTDIAHW------PGGPFGARWFGLSAPWGSYGIHGTNNPGSIGT-- 141 Query: 337 RFETSGCVRVRN 348 + + GC+R+ N Sbjct: 142 -YASLGCIRMFN 152 Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 2/69 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ V L+ L +G + E V + GL P G D + Sbjct: 182 VYRRGDVGQDVVLLQLALRATGF--DPGVADGVYGGVTEKTVAEAEWWFGLHPDGTADMA 239 Query: 161 TLEAMNVPV 169 + Sbjct: 240 LQRLVGFRP 248 >gi|258511676|ref|YP_003185110.1| spore cortex-lytic enzyme [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478402|gb|ACV58721.1| spore cortex-lytic enzyme [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 267 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 R L G++ V L+ RL + G + F AV+ FQ GL + Sbjct: 31 QAFTARNLIYGSTGYDVDELQGRLHLLGYY--WGRIDGIFGWKTYWAVRTFQYNFGLPVT 88 Query: 155 GMVDSST 161 G VD T Sbjct: 89 GEVDMRT 95 >gi|297204540|ref|ZP_06921937.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197710599|gb|EDY54633.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 300 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V + L +G G+ F AVK FQ R GLD G++ + +A Sbjct: 240 GASGADVAEAQCLLRRAG--ISPGGIDGMFGPLTLRAVKTFQDREGLDADGILGPRSWKA 297 Query: 165 MN 166 + Sbjct: 298 LR 299 >gi|56964579|ref|YP_176310.1| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16] gi|56910822|dbj|BAD65349.1| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16] Length = 338 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + L+ L ++G AF E AV+ FQ GL G+ +T Sbjct: 277 RRGAKGNLTRVLQALLYLAGH--NPGPFDGAFGDGTEKAVRAFQKAKGLGVDGIAGKNTW 334 Query: 163 EAM 165 +A+ Sbjct: 335 KAL 337 >gi|220932691|ref|YP_002509599.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] gi|219994001|gb|ACL70604.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] Length = 225 Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 6/83 (7%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V++++ L G + AV+ +Q GL G+V +T E + Sbjct: 2 MRGDDVEQVQTFLNQQGY---DVTVDGILGPETAGAVRDYQEDKGLSVDGVVGPNTREEI 58 Query: 166 NVP---VDLRIRQLQVNLMRIKK 185 D+R + ++ Sbjct: 59 KKDLGIEDVRHEIYFHDTEKVYW 81 >gi|309776368|ref|ZP_07671355.1| putative N-acetylmuramoyl-L-alanine amidase [Erysipelotrichaceae bacterium 3_1_53] gi|308915887|gb|EFP61640.1| putative N-acetylmuramoyl-L-alanine amidase [Erysipelotrichaceae bacterium 3_1_53] Length = 168 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIIS---GDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + L GN + V + + L + G + + E AV+ +Q L Sbjct: 1 MISKAALKPGNIGIGVNKQQAYLNMMQEKGFITTRNLQDGVYGTRTEQAVREWQKYANLP 60 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + + T +++ LR Q+ N+ Sbjct: 61 IDGEIGNDTWDSIV--NKLRDLQITTNI 86 Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERL---IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G +SV +++E L S + + + + V+ FQ + L+ G++ Sbjct: 95 LSSGAQGISVFKMQEYLNEIAASNKCLRPIPVDGMYGSRTTTMVQQFQYLYDLNIDGVIG 154 Query: 159 SSTLEAM 165 +T +A+ Sbjct: 155 KATWDAI 161 >gi|125532922|gb|EAY79487.1| hypothetical protein OsI_34615 [Oryza sativa Indica Group] gi|125575664|gb|EAZ16948.1| hypothetical protein OsJ_32430 [Oryza sativa Japonica Group] Length = 337 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L+ L G + + AFD ++E AV+ +Q R L +G +D++TL+ Sbjct: 30 GSHVTGLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTRFSLPVTGRLDNATLD 89 Query: 164 AMNVP 168 + P Sbjct: 90 QIMSP 94 >gi|23099261|ref|NP_692727.1| sporulation specific N-acetylmuramoyl-L-alanine amidase [Oceanobacillus iheyensis HTE831] gi|25453277|sp|P59105|SLEB_OCEIH RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; Flags: Precursor gi|22777490|dbj|BAC13762.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Oceanobacillus iheyensis HTE831] Length = 276 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 2/86 (2%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + Y + + G V L+ RL G + + F A Sbjct: 18 LTMYFTQTDNTKTYAFSDQVIQQGAVGEDVIELQARLQYLGFY--NGKIDGVFGWGTYWA 75 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ FQ G++ G+ +T + + Sbjct: 76 LRNFQYEFGMEIDGLAGQTTKDKLVQ 101 >gi|307311004|ref|ZP_07590649.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307321938|ref|ZP_07601320.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306892408|gb|EFN23212.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306899684|gb|EFN30311.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 224 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 45/190 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I ++ R K ++VN P+ L V G +R + VG+ Sbjct: 58 PGVPINRVDQRFHRQIVDYPTKERPGTIVVNTPSRFLYYVLPGGKAVRYGIGVGKQGFA- 116 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P K+M + +Y++ Sbjct: 117 WEGEAYVAWKQEWPTWHPP-----KEMAERKPEVARYVEAG------------------- 152 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCV 344 PG N + + + +++ +H TPE +SGC+ Sbjct: 153 -----------MGPGISNPLGARALYLFNKEGRDTLFRLHGTPEWSSIGT---AASSGCI 198 Query: 345 RV--RNIIDL 352 R+ ++I+DL Sbjct: 199 RLMNQDIMDL 208 >gi|301059160|ref|ZP_07200101.1| peptidoglycan binding domain protein [delta proteobacterium NaphS2] gi|300446740|gb|EFK10564.1| peptidoglycan binding domain protein [delta proteobacterium NaphS2] Length = 395 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 SV+ L+ RL G S A++ FQ HGL G L Sbjct: 96 DPSVRELQRRLAKLGYKPGSADGKT--GTKTRKAIRWFQAAHGLTVDGRFSEQLLA 149 >gi|218233206|ref|YP_002365541.1| hypothetical protein BCB4264_A0806 [Bacillus cereus B4264] gi|218161163|gb|ACK61155.1| conserved domain protein [Bacillus cereus B4264] Length = 219 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 10/92 (10%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIEFY 316 ++ Y + + + E + + ++ PG N + + + Sbjct: 5 ENGNY--KKTFPVTTGRDRTPTPEGNFCIITKFKNKEYHRKKIPGGAPNNPLGTRWLGL- 61 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 62 DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 90 >gi|160892800|ref|ZP_02073590.1| hypothetical protein CLOL250_00331 [Clostridium sp. L2-50] gi|156865841|gb|EDO59272.1| hypothetical protein CLOL250_00331 [Clostridium sp. L2-50] Length = 413 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G + V++L+E+L I P+ + AV+ FQ L + Sbjct: 329 PGYDLSIGATGDKVRQLQEQLNRIAQNYPSIPTVAADGIYGPATADAVRRFQQIFDLPVT 388 Query: 155 GMVDSSTLEAMNV 167 G+ D ST ++ Sbjct: 389 GITDYSTWYKVSQ 401 >gi|240139634|ref|YP_002964110.1| hypothetical protein MexAM1_META1p3085 [Methylobacterium extorquens AM1] gi|240009607|gb|ACS40833.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 236 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 14/88 (15%) Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDP--------GKINAMASTKIEFYSRNNTYMHDTPE 328 G + + +W PP + R+ P G N + + + + +H T E Sbjct: 142 TGAKTISAKREWPDWTPPAEMLRRRPDLPRHMVGGPENPLGARAMYLGTS-LYRIHGTNE 200 Query: 329 PILFNNVVRFETSGCVRV--RNIIDLDV 354 P +SGC+R+ ++IDL Sbjct: 201 PHTIGQN---VSSGCIRMMNEDVIDLYE 225 >gi|83950058|ref|ZP_00958791.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius nubinhibens ISM] gi|83837957|gb|EAP77253.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius nubinhibens ISM] Length = 176 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 53/199 (26%), Gaps = 48/199 (24%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGR 223 + P R + + + ++ + + +L +G V Sbjct: 18 VLAPTGTRRNASSFTMQDWRDHF-DTLDQGAIVADTGSRALHYWNADGSDYRIYPTSVPM 76 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + T ++++ R P W S+ + ++P+ Sbjct: 77 TEELTKRGYTKVVRKRVGPDWTPTPSM--------VERNPELKY---------------- 112 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 PG N + + + +H T + R + GC Sbjct: 113 ----------------MPPGPDNPLGTHAMYLSWP-AYLIHGTHDTRKIG---RRSSDGC 152 Query: 344 VRVRN--IIDLDVWLLKDT 360 + + N I +L + T Sbjct: 153 IGLYNEKIEELYALVPIGT 171 >gi|196040521|ref|ZP_03107821.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|228936776|ref|ZP_04099566.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229094148|ref|ZP_04225228.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock3-42] gi|196028653|gb|EDX67260.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|228689251|gb|EEL43072.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock3-42] gi|228822895|gb|EEM68737.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 153 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 39/169 (23%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKASTPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFERIP 145 >gi|158321863|ref|YP_001514370.1| peptidoglycan binding domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158142062|gb|ABW20374.1| Peptidoglycan-binding domain 1 protein [Alkaliphilus oremlandii OhILAs] Length = 762 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+ L G + + +F AVK +Q ++GL G V T Sbjct: 44 LVKGSIGNDVKLLQTLLNNEG---ANLEVDGSFGPLTLKAVKEYQSKNGLKVDGFVGPLT 100 Query: 162 LEAMNVPVDL 171 ++ Sbjct: 101 RASLMGKAAQ 110 >gi|27364080|ref|NP_759608.1| general secretion pathway protein A [Vibrio vulnificus CMCP6] gi|27360198|gb|AAO09135.1| General secretion pathway protein A [Vibrio vulnificus CMCP6] Length = 718 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 11/141 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L LG +++ L + L + L+ ++ F+A + V+ FQ + Sbjct: 456 WPMPLRETLRLGMHGEAIEVLDQLLAKA--LNDEPLMTTQFNAELMQRVEWFQRWQAMTE 513 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA-SLEAVENGK 212 G+ TL R++ + ++L + + ++ P SL + Sbjct: 514 DGIAGQRTLA--------RLQHMVSLSEPWRELSQAEKQGEEQVMRYPEFPSLAPLLRTY 565 Query: 213 VGLRSTVIVGRVDRQTPILHS 233 + ++ D+ +P L + Sbjct: 566 PLAETGDVINVADQTSPTLVA 586 >gi|283796334|ref|ZP_06345487.1| spore cortex-lytic enzyme SleC [Clostridium sp. M62/1] gi|291075734|gb|EFE13098.1| spore cortex-lytic enzyme SleC [Clostridium sp. M62/1] gi|295091586|emb|CBK77693.1| Putative peptidoglycan-binding domain-containing protein [Clostridium cf. saccharolyticum K10] gi|295116196|emb|CBL37043.1| Putative peptidoglycan-binding domain-containing protein [butyrate-producing bacterium SM4/1] Length = 423 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L +G+ V++++E+L I + P + AV+ FQ GL Sbjct: 337 SFPGTDLTIGSRGSKVRQMQEQLDAIATIYTAIPRIQPDGIYGPATAEAVRTFQSIFGLP 396 Query: 153 PSGMVDSSTLEAMN 166 +G+VD +T ++ Sbjct: 397 QTGVVDFATWYKIS 410 >gi|209546852|ref|YP_002278770.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538096|gb|ACI58030.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 224 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 10/180 (5%) Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 K+ R V + PI ++ Y ++ + + + R+ ++ I Sbjct: 51 KIDRRWQRQVVKYFSSEPIGTVVVDTRHHFLYVIMENKTAIRYGVGVGREGFKWFGRATI 110 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPE 328 + + P F N + + + H T E Sbjct: 111 DAKSLWPQWTPPP--EMRKRHPELPEFVAGGSPKNPLGPRAMYLHRDGVDTGYRFHGTLE 168 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 P +SGC+R+ N +D L + P + + + + + +++ PV Sbjct: 169 PWSIGKD---ASSGCIRMFNEDAID--LYQRCPIGTAVQVLPHIADQAESTTQVSQTTPV 223 >gi|118485900|gb|ABK94796.1| unknown [Populus trichocarpa] Length = 309 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G + + L++ L G S FD ++E A+K +Q L+ +G +DSS Sbjct: 47 KKGQTVQGLIELKQYLKKLGYYPSDDITLTSSDFDDHLELALKTYQEYFHLNVTGNLDSS 106 Query: 161 TLEAMNVP 168 T++ M +P Sbjct: 107 TIQQMVIP 114 >gi|71892403|ref|YP_277923.1| hypothetical protein BPEN_424 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796509|gb|AAZ41260.1| putative exported protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 315 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 49/196 (25%), Gaps = 46/196 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPY 243 L+ +++N L E + + +G + TP + I Sbjct: 91 LILPNTPHSGIVINNAEMRLYYYPEKKNTVIVLPIAIGTIKNATPSHWITSITHKK--KP 148 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 IP ++ + + G Sbjct: 149 IWIPTKSMRDEYIKH----------------------------------GEILPTIFPAG 174 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-T 362 N M + H T F +R T GC+R+R D+ +L P Sbjct: 175 SSNPMGLYALYLEKNYAI--HGTN--RNFGIGLR-ITRGCIRLR-PEDI-EYLFNIVPVG 227 Query: 363 WSRYHIEEVVKTRKTT 378 I E VK+ Sbjct: 228 TKVQFINEPVKSTVEK 243 >gi|283770491|ref|ZP_06343383.1| ctpA serine protease [Staphylococcus aureus subsp. aureus H19] gi|283460638|gb|EFC07728.1| ctpA serine protease [Staphylococcus aureus subsp. aureus H19] Length = 496 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 SKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|282916688|ref|ZP_06324446.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus D139] gi|282319175|gb|EFB49527.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus D139] Length = 496 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 SKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|323484631|ref|ZP_08089993.1| hypothetical protein HMPREF9474_01744 [Clostridium symbiosum WAL-14163] gi|323694833|ref|ZP_08108988.1| spore cortex-lytic enzyme SleC [Clostridium symbiosum WAL-14673] gi|323402014|gb|EGA94350.1| hypothetical protein HMPREF9474_01744 [Clostridium symbiosum WAL-14163] gi|323501149|gb|EGB17056.1| spore cortex-lytic enzyme SleC [Clostridium symbiosum WAL-14673] Length = 427 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L +G+S V++++E+L I + P + + +VK+FQ GL Sbjct: 341 SFPGTNLTIGSSGDKVRQMQEQLDTIATVYSSIPRVAIDGIYGPATAESVKVFQSVFGLP 400 Query: 153 PSGMVDSSTLEAMN 166 +G+VD +T ++ Sbjct: 401 QTGVVDFATWYKIS 414 >gi|86738799|ref|YP_479199.1| ErfK/YbiS/YcfS/YnhG [Frankia sp. CcI3] gi|86565661|gb|ABD09470.1| ErfK/YbiS/YcfS/YnhG [Frankia sp. CcI3] Length = 231 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 26/118 (22%) Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR-------QDPGKINAMASTKIEFYSRN 319 + + + G ++ E V + + P R + + Sbjct: 116 SRHRLQVF-SNGTQIAEEPVGIGTADTPTPGGRFYLMELLKPRDPNGPYGPYAFGL-NGF 173 Query: 320 N------------TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 + +H T EP L + GC+R+ N I L + TP Sbjct: 174 STSLSSFGGHKPVIGVHGTNEPKLIGKD---VSHGCIRLSNDAITRLAQTVPLGTPID 228 >gi|218290950|ref|ZP_03495007.1| spore cortex-lytic enzyme [Alicyclobacillus acidocaldarius LAA1] gi|218239115|gb|EED06318.1| spore cortex-lytic enzyme [Alicyclobacillus acidocaldarius LAA1] Length = 267 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 R L G++ V L+ RL + G + F AV+ FQ GL + Sbjct: 31 QAFTARNLIYGSTGYDVDELQGRLHLLGYY--WGRIDGIFGWKTYWAVRTFQYNFGLPVT 88 Query: 155 GMVDSST 161 G VD T Sbjct: 89 GEVDMRT 95 >gi|315658324|ref|ZP_07911196.1| carboxy-terminal processing protease CtpA [Staphylococcus lugdunensis M23590] gi|315496653|gb|EFU84976.1| carboxy-terminal processing protease CtpA [Staphylococcus lugdunensis M23590] Length = 483 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G+++ V+ ++ L G ++ FD +E A+K FQ + L +G D Sbjct: 398 SYHKGDNNKHVKAMKIGLTALGYKVDNESKD--FDDNLEQAIKAFQQDNNLTVNGQFDKE 455 Query: 161 TLEAMNVPVDLRIRQ 175 T + V + + + Sbjct: 456 TNDKFTVQLVEKANK 470 >gi|289550827|ref|YP_003471731.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus lugdunensis HKU09-01] gi|289180359|gb|ADC87604.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus lugdunensis HKU09-01] Length = 483 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G+++ V+ ++ L G ++ FD +E A+K FQ + L +G D Sbjct: 398 SYHKGDNNKHVKAMKIGLTALGYKVDNESKD--FDDNLEQAIKAFQQDNNLTVNGQFDKE 455 Query: 161 TLEAMNVPVDLRIRQ 175 T + V + + + Sbjct: 456 TNDKFTVQLVEKANK 470 >gi|312621329|ref|YP_004022942.1| carboxyl-terminal protease [Caldicellulosiruptor kronotskyensis 2002] gi|312201796|gb|ADQ45123.1| carboxyl-terminal protease [Caldicellulosiruptor kronotskyensis 2002] Length = 472 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + V ++RL G L D +A+K FQ + L P G++ Sbjct: 380 ATKKYKKGDMDLEVLAAQQRLFYLGYLSSWTA---KMDDNTVAAIKKFQKDNKLYPYGVL 436 Query: 158 DSSTLEAMNVPVDL 171 D +T + +N Sbjct: 437 DVTTQKKLNEKFSE 450 >gi|282927518|ref|ZP_06335135.1| carboxyl-terminal processing protease [Staphylococcus aureus A9765] gi|282592058|gb|EFB97084.1| carboxyl-terminal processing protease [Staphylococcus aureus A9765] Length = 496 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDKALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|326202807|ref|ZP_08192674.1| spore cortex-lytic enzyme [Clostridium papyrosolvens DSM 2782] gi|325986884|gb|EGD47713.1| spore cortex-lytic enzyme [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 4/94 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G++ V+ +++ L G D + F +V +Q ++GL +G+ Sbjct: 30 SAPSLKIGDNGDKVKDMQQELKNWGYFD--GQVDGRFGYDTLRSVLNYQRQYGLKANGVA 87 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 D +TL + + + I VN + +++ Sbjct: 88 DRTTL--LTMGLAELIESGTVNAASKSNISNEQL 119 >gi|253732059|ref|ZP_04866224.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724192|gb|EES92921.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 496 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDKALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|229028554|ref|ZP_04184671.1| hypothetical protein bcere0028_6680 [Bacillus cereus AH1271] gi|228732772|gb|EEL83637.1| hypothetical protein bcere0028_6680 [Bacillus cereus AH1271] Length = 253 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + + +H T + ++GC+R+ Sbjct: 67 TKFKNKEYHRKKIPGGAPNNPLGTRWLGLDKKE-YAIHGTNREWTIGSRE---SNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|87160602|ref|YP_494010.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195151|ref|YP_499952.1| hypothetical protein SAOUHSC_01427 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221544|ref|YP_001332366.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus str. Newman] gi|161509587|ref|YP_001575246.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142075|ref|ZP_03566568.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451079|ref|ZP_05699114.1| carboxyl-terminal protease [Staphylococcus aureus A5948] gi|284024420|ref|ZP_06378818.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 132] gi|294850746|ref|ZP_06791464.1| carboxyl-terminal processing protease [Staphylococcus aureus A9754] gi|304381001|ref|ZP_07363658.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|87126576|gb|ABD21090.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202709|gb|ABD30519.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374344|dbj|BAF67604.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368396|gb|ABX29367.1| S41A family carboxy-terminal peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861134|gb|EEV83947.1| carboxyl-terminal protease [Staphylococcus aureus A5948] gi|269940915|emb|CBI49299.1| putative protease [Staphylococcus aureus subsp. aureus TW20] gi|294822386|gb|EFG38837.1| carboxyl-terminal processing protease [Staphylococcus aureus A9754] gi|302751250|gb|ADL65427.1| serine protease [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340477|gb|EFM06414.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315195854|gb|EFU26222.1| S41A family carboxy-terminal peptidase [Staphylococcus aureus subsp. aureus CGS01] gi|320140334|gb|EFW32191.1| peptidase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142665|gb|EFW34468.1| peptidase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314097|gb|AEB88510.1| Carboxyl-terminal protease [Staphylococcus aureus subsp. aureus T0131] gi|329730570|gb|EGG66956.1| peptidase, S41 family [Staphylococcus aureus subsp. aureus 21189] Length = 496 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDKALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|57650378|ref|YP_186306.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus COL] gi|81694508|sp|Q5HG01|CTPAL_STAAC RecName: Full=Probable CtpA-like serine protease gi|57284564|gb|AAW36658.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus COL] Length = 496 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDKALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|330448768|ref|ZP_08312415.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492959|dbj|GAA06912.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 522 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G + V L ++L L + FD V ++ FQ L G+ Sbjct: 444 SIRFGQNGPRVAWLDQQLND--FLGENSPRKGYFDQSVLDKLRRFQRSQDLTADGIAGPM 501 Query: 161 TL 162 TL Sbjct: 502 TL 503 >gi|301056523|ref|YP_003794734.1| hypothetical protein BACI_c50430 [Bacillus anthracis CI] gi|300378692|gb|ADK07596.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 153 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 38/169 (22%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKASTPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWTTL---GCIRMYNND--IHWLFERIP 145 >gi|196047550|ref|ZP_03114760.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|196021664|gb|EDX60361.1| conserved hypothetical protein [Bacillus cereus 03BB108] Length = 153 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 38/169 (22%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKASTPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWTTL---GCIRMYNND--IHWLFERIP 145 >gi|167630819|ref|YP_001681318.1| peptidoglycan-binding domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167593559|gb|ABZ85307.1| peptidoglycan-binding domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 389 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Query: 98 PIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P P L G++ +V+RL+ L + L ++ +D E+AV+ FQ G++P Sbjct: 169 PAGPTCPELGRGSTGEAVRRLQRLLDAAQYL---VTVTGVYDQATENAVRTFQSEVGINP 225 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 +G + T ++ R + + R+ Sbjct: 226 TGRANLETWLSLGESCGDLPRPPRHRITRV 255 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 5/103 (4%) Query: 95 PELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P P L LG SV+RL++ L SG + F +AV Q R Sbjct: 49 PASPGGLCPTLSLGARGASVRRLQQLLARSG--LNPGPIDGIFGTATRNAVIGLQRRQNR 106 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 +P+G+V+ S +A+ + + + + R Sbjct: 107 EPTGIVERSEWQALGINCARPPVPPFPRQPGQRPPVTPQPPRR 149 >gi|210631829|ref|ZP_03297071.1| hypothetical protein COLSTE_00961 [Collinsella stercoris DSM 13279] gi|210159949|gb|EEA90920.1| hypothetical protein COLSTE_00961 [Collinsella stercoris DSM 13279] Length = 302 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 12/89 (13%) Query: 89 LSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + W L LG+ VQ L+ L G F + Sbjct: 60 VDGAAWSALVDASYKLGDRTLYLRLPNFHGADVQALQRALNTLGF--ACGVDDGFFGPHT 117 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 E+A++ FQ GL GM T +N Sbjct: 118 EAALQQFQENVGLFADGMAFQDTFAYINR 146 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMRHGLDPSGMVD 158 + G +V+ ++ RL G S F +AV+ F+ GL+P VD Sbjct: 2 ESIAQGMQGPAVEDVQTRLTSLGYTIDEAETSAKEFGTTSAAAVRAFRASQGLEPGDEVD 61 Query: 159 SSTLEAM 165 + A+ Sbjct: 62 GAAWSAL 68 >gi|297196973|ref|ZP_06914370.1| peptidoglycan binding domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197717507|gb|EDY61541.1| peptidoglycan binding domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 250 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + V+ ++ RL G P + F + +A + FQ +GL G+V + T Sbjct: 184 KTGTVAEGVKNIQRRLNELG-WSPPLDVDGKFGPHSAAAARWFQTNNGLTADGIVGNQTW 242 Query: 163 EAMNVP 168 + Sbjct: 243 RRLVDS 248 >gi|297583387|ref|YP_003699167.1| carboxyl-terminal protease [Bacillus selenitireducens MLS10] gi|297141844|gb|ADH98601.1| carboxyl-terminal protease [Bacillus selenitireducens MLS10] Length = 496 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL +S V+ + L +G FD AV+ FQ GLD + Sbjct: 402 PISADEPLVFDMNSEHVESAQVMLAATGY--DPGREDGYFDEGTVEAVEAFQEAEGLDVT 459 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 G + T + + + +I+ + +L + L Sbjct: 460 GEIGEETADRLQEVLIEQIQDRENDLQLKRAL 491 >gi|254559326|ref|YP_003066421.1| hypothetical protein METDI0732 [Methylobacterium extorquens DM4] gi|254266604|emb|CAX22374.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 282 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 45/193 (23%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 V NL R+ +++ V+ L V G +R V VG+ Sbjct: 53 FPVEAVDPRNLKARNLRRLVDYPTKELPGTLVVDPHGRF-LYLVMEGGKAMRYGVGVGKA 111 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + + + R P W +I++D R Sbjct: 112 GFE-FTGEATVARKASWPRWTPTPDMIRRDPTRNGRWAGG-------------------- 150 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETS 341 G N + + + ++ Y +H T EP +S Sbjct: 151 ---------------MPGGDRNPLGARALYLFKDGKDTLYRIHGTTEPWSIGE---AVSS 192 Query: 342 GCVRV--RNIIDL 352 GC+R+ +++IDL Sbjct: 193 GCIRMLNQDVIDL 205 >gi|315268212|gb|ADT95065.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS678] Length = 273 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L++RL +G S + F + A++ FQ + L +G Sbjct: 2 TLRKGSNGSQVRDLQQRLNAAG---ASLVVDGWFGDATQKAIEQFQDKQDLPRTGYAGVR 58 Query: 161 TLE 163 TL Sbjct: 59 TLA 61 >gi|223043295|ref|ZP_03613342.1| carboxy- processing protease [Staphylococcus capitis SK14] gi|222443506|gb|EEE49604.1| carboxy- processing protease [Staphylococcus capitis SK14] Length = 492 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + HLG+ + +V+ ++ L G S FD+ +ESA+K FQ + L+ +G D Sbjct: 406 KTYHLGDENKNVKTMKIGLTALGY--KVNNESNQFDSELESAIKSFQKDNHLEVTGKFDK 463 Query: 160 ST 161 +T Sbjct: 464 TT 465 >gi|110677878|ref|YP_680885.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter denitrificans OCh 114] gi|109453994|gb|ABG30199.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter denitrificans OCh 114] Length = 219 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 42/161 (26%), Gaps = 27/161 (16%) Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 + P + + ++P I + L Sbjct: 34 VWDARVTPANYDPATTNPWGLHPRF---LPVRVEANSGLVPGDIHVDAVARYLYHVQGDG 90 Query: 267 KDNNIHMIDEKGKEVFVE------EVDWNSPEPPNFIFRQDP------------GKINAM 308 + +G + W P + R+DP G N + Sbjct: 91 TAMRYGVAIARGNLYEPGVFTIRRKARWPKWTPTAEMIRRDPELYTEFADGMPGGPDNPL 150 Query: 309 ASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + + +R+ +H TP P + +SGCVR+ Sbjct: 151 GARALYLYEGNRDTYLRIHGTPSPRSIGSR---ASSGCVRM 188 >gi|323137954|ref|ZP_08073028.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322396673|gb|EFX99200.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 190 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 41/153 (26%), Gaps = 44/153 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V L V + V VGR T + R P W P ++++ Sbjct: 62 IVVATKQRRLYYVLGDGQAIEYGVGVGREG-FTWSGTKTVTRKREWPDWRPPPQMLKRR- 119 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ G N + + + Sbjct: 120 --------------------------------------PDLPRHMAGGMENPLGARALYL 141 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC+R+ N Sbjct: 142 GSSE-YRIHGSNEPDTIGA---AVSSGCIRMTN 170 >gi|281417038|ref|ZP_06248058.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum JW20] gi|281408440|gb|EFB38698.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum JW20] Length = 230 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 17/103 (16%) Query: 265 YLKDNNIHMID---EKGKEVFVEEVD-WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 YL + + + GK W ++ + + Sbjct: 46 YLYKDGVLLKTYPVSGGKPETPSPEGTWKIISKSDW--------GGNFGGSWMGLNVPWG 97 Query: 321 -TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +H T P + GC+R+ +N +L + T Sbjct: 98 QYGIHGTKYPWYIGRQN--ASHGCIRMYNKNAKELYDIVPYGT 138 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L G+ V ++++ L G S F ++ +V FQ + + +G V Sbjct: 148 PFKELKSGDVGSDVLKVQKALKKLGYFH--DWPSGKFQDNLKKSVIKFQKNNKIKVTGTV 205 Query: 158 DSSTLEAMNVPVDLRIR 174 + S + + +++ Sbjct: 206 NKSLYNLIMKKYEEKMQ 222 >gi|92119139|ref|YP_578868.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gi|91802033|gb|ABE64408.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 199 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 44/177 (24%), Gaps = 46/177 (25%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 QL + L +++ L ++ +R + VGR Q Sbjct: 46 QLDPEYRKQVVLYRTTEPPGTIIIQTAERHLYLIQGNGRAIRYGIGVGREGFQ-WQGILN 104 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I R P W P +I++ P Sbjct: 105 ITRKAEWPDWTPPPEMIKRQ---------------------------------------P 125 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 G N + + + Y +H T P +SGC R+ N Sbjct: 126 YLPRFMAGGPGNPLGARAMYL--GTTVYRIHGTNRPDTIGT---AISSGCFRLVNAD 177 >gi|325916291|ref|ZP_08178569.1| putative peptidoglycan binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325537462|gb|EGD09180.1| putative peptidoglycan binding protein [Xanthomonas vesicatoria ATCC 35937] Length = 268 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 7/88 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGL 151 P + + +G SS V++++ L G + ++ AV +Q GL Sbjct: 38 PIVDDGTIRIGESSDIVRQVQRTLNAEGFRGADNQPLQEDGVYRLSMQPAVINYQQARGL 97 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 P+G +D +TL+ + R+ ++N Sbjct: 98 SPTGDIDPATLQQI----APRVFPPELN 121 >gi|226314867|ref|YP_002774763.1| carboxyl-terminal processing protease precursor [Brevibacillus brevis NBRC 100599] gi|226097817|dbj|BAH46259.1| putative carboxyl-terminal processing protease precursor [Brevibacillus brevis NBRC 100599] Length = 466 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L + V+ L+ LI+ G FD E A+K FQ L+ +G V Sbjct: 374 ADKVLQRDMAGTDVKNLQ--LILKGLNLSPGREDGYFDEKTEEAIKQFQTSSKLEVTGKV 431 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 D+ T ++ + + + + +L K L Sbjct: 432 DAKTRSSLEESLRKTMTKPENDLQLQKAL 460 >gi|116249572|ref|YP_765410.1| putative ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254220|emb|CAK03835.1| putative ErfK/YbiS/YhnG family protein [Rhizobium leguminosarum bv. viciae 3841] Length = 201 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 11/106 (10%) Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWN-----SPEPPNFIFRQDPGKINAMASTKIEFYS 317 P + +W + P PG N + + I Sbjct: 95 PIAVGREGKQWYGSTRVVSKRAHPEWRPTAGMRQKNPRLPAVVKPGPANPLGTRAIYLAD 154 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 +H T +P +SGC R+ +++ +L + T Sbjct: 155 G-LLRIHGTNDPSSIGTN---ASSGCFRMYRQDVEELYEIVQPGTK 196 >gi|257413209|ref|ZP_04742330.2| spore cortex-lytic enzyme SleC [Roseburia intestinalis L1-82] gi|257204288|gb|EEV02573.1| spore cortex-lytic enzyme SleC [Roseburia intestinalis L1-82] Length = 427 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 WP + L +G++ V++++E R+ S P+ + AV++FQ G Sbjct: 342 WPRV---DLTIGSTGEKVRQIQEELARISRSYPAIPTVTPDGIYGPATREAVEVFQRVFG 398 Query: 151 LDPSGMVDSSTL 162 L +G++D T Sbjct: 399 LPVTGVIDYRTW 410 >gi|228957168|ref|ZP_04118935.1| hypothetical protein bthur0005_6940 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802495|gb|EEM49345.1| hypothetical protein bthur0005_6940 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 219 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 33 TKFKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|229062697|ref|ZP_04200006.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH603] gi|229135863|ref|ZP_04264631.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BDRD-ST196] gi|229169750|ref|ZP_04297450.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH621] gi|228613789|gb|EEK70914.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH621] gi|228647603|gb|EEL03670.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BDRD-ST196] gi|228716667|gb|EEL68364.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH603] Length = 153 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 38/167 (22%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ ++GK TV G+ TP +I + N + I D Sbjct: 32 IVNTKINKMDYYQDGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGK---ATTLGCIRMFNND--IHWLFER 143 >gi|146300718|ref|YP_001195309.1| peptidoglycan binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146155136|gb|ABQ05990.1| Peptidoglycan-binding domain 1 protein [Flavobacterium johnsoniae UW101] Length = 274 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 20/223 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + LG S V L E L+ G S +S +F + +V+ FQ+++ L G+V Sbjct: 2 RTIKLGVKSNEVYYLNELLVKLGY---SIVVSDSFGTATDKSVRDFQLKNNLVVDGVVGL 58 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T + N K L EQ + N+ L V+ + Sbjct: 59 KTWTVLLEKSK------NSNTSNSKLLSEQNLIDFAKQFNL---ELAVVKAVNEVESNGK 109 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 R + + + P + L ++ + N + Sbjct: 110 GFLVDGRPKILFEGHVFWKQLENRNIDP-----HIYVNTLNENI-LFEKYNRKYYVGGAE 163 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 E ++ + + FR + +I ++ Sbjct: 164 EYNR--LEKAASLGADKKFRDAANCSASWGLFQIMGFNAVPIG 204 >gi|313200752|ref|YP_004039410.1| erfk/ybis/ycfs/ynhg family protein [Methylovorus sp. MP688] gi|312440068|gb|ADQ84174.1| ErfK/YbiS/YcfS/YnhG family protein [Methylovorus sp. MP688] Length = 164 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 8/64 (12%) Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 N + + Y+H TP+ L + GCVR+RN +I L + TP W Sbjct: 103 NRLGQVD---SMQRYIYIHGTPDTELMGV---AASHGCVRMRNTDVITLFDLVPVGTPVW 156 Query: 364 SRYH 367 Sbjct: 157 LEDD 160 >gi|312881706|ref|ZP_07741483.1| general secretion pathway protein A [Vibrio caribbenthicus ATCC BAA-2122] gi|309370596|gb|EFP98071.1| general secretion pathway protein A [Vibrio caribbenthicus ATCC BAA-2122] Length = 537 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 13/155 (8%) Query: 31 IHASVLDEIINESYHSIV-------NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 + ++ ++N +V +RF D + I + + KA+ Sbjct: 383 LSQGDIETLLN-LNRPVVLSLLIDSEERFAVLYGLSDSRVKLLI---GERVFSFDRKALN 438 Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W R L LG V L + L + L S F+ + + V+ Sbjct: 439 LIWHGDYHQIWHSRWDRTLQLGMKGKDVISLDQSLSKA--LGKPISDSKEFNQQLLNKVR 496 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 FQ GL+ G+ TL + L + Sbjct: 497 EFQGWQGLNVDGIAGQQTLRHLERLSQPDAPSLTI 531 >gi|316936276|ref|YP_004111258.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315603990|gb|ADU46525.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 195 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 8/107 (7%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MH 324 + + I K + P G N M + + S Y +H Sbjct: 93 FQWQGLLKISRKAEWPDWTPPPEMIQRQPYLPRFMAGGPGNPMGARAMYLGS--TVYRIH 150 Query: 325 DTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIE 369 T P +SGC R+ N DL + T R E Sbjct: 151 GTNRPDTIGT---AISSGCFRLVNADVMDLYDRVPVGTKVVVRQKPE 194 >gi|254384384|ref|ZP_04999726.1| hypothetical protein SSAG_04028 [Streptomyces sp. Mg1] gi|194343271|gb|EDX24237.1| hypothetical protein SSAG_04028 [Streptomyces sp. Mg1] Length = 120 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 R L ++ V L+ RL G S L +D +++ A + FQ ++G+ G+ Sbjct: 49 KRTLRRHDTGPEVVDLQRRLAQLGLW--SLPLRGRYDRHLDDAAQRFQAKYGVRGDPPGV 106 Query: 157 VDSSTLEAMN 166 +T + + Sbjct: 107 YGPATRQRLE 116 >gi|297204538|ref|ZP_06921935.1| predicted protein [Streptomyces sviceus ATCC 29083] gi|297148725|gb|EFH29093.1| predicted protein [Streptomyces sviceus ATCC 29083] Length = 509 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V L+ L G S + +F +AVK FQ GL G V +T A Sbjct: 198 GQSGGCVATLQSLLNGKG---HSLDVDGSFGPQTLAAVKAFQSASGLSADGEVGPNTKAA 254 Query: 165 M 165 + Sbjct: 255 L 255 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V L+ LI G + + F A SAV+ FQ HGL G V ++T Sbjct: 113 LVQGAKGGCVTELQRLLIHHGYV---VDVDGDFGAGTASAVRSFQSAHGLTVDGQVGTNT 169 Query: 162 LEAM 165 A+ Sbjct: 170 KRAL 173 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V L+ L G + F +SAV+ FQ GL G V +T A Sbjct: 285 GQHSGCVTELQSLLNHHG---ADLAVDGDFGPLTDSAVRDFQSEKGLSVDGQVGPNTKAA 341 Query: 165 M 165 + Sbjct: 342 L 342 Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 3/75 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G +S V L+ L G + F + AV+ +Q + G V +T Sbjct: 34 GQASGCVTELQRLLNAHG---AGLAVDGQFGSATLYAVREYQAATAIAVDGRVGPATKSK 90 Query: 165 MNVPVDLRIRQLQVN 179 + + +N Sbjct: 91 LYATGGSAPAPVSLN 105 >gi|291539241|emb|CBL12352.1| Putative peptidoglycan-binding domain-containing protein [Roseburia intestinalis XB6B4] Length = 419 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 WP + L +G++ V++++E R+ S P+ + AV++FQ G Sbjct: 334 WPRV---DLTIGSTGEKVRQIQEELARISRSYPAIPTVTPDGIYGPATREAVEVFQRVFG 390 Query: 151 LDPSGMVDSSTL 162 L +G++D T Sbjct: 391 LPVTGVIDYRTW 402 >gi|218679421|ref|ZP_03527318.1| hypothetical protein RetlC8_11271 [Rhizobium etli CIAT 894] Length = 116 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + + Q+ G+ N + + + R+ + +H T +P + +SGC+R Sbjct: 13 EAAKGHIIPAYQEGGEDNPLGARAMYLYQGGRDTIFRIHGTNQPWTIGLNM---SSGCIR 69 Query: 346 VRN 348 + N Sbjct: 70 MMN 72 >gi|163742752|ref|ZP_02150137.1| ErfK/YbiS/YcfS/YnhG family protein [Phaeobacter gallaeciensis 2.10] gi|161384007|gb|EDQ08391.1| ErfK/YbiS/YcfS/YnhG family protein [Phaeobacter gallaeciensis 2.10] Length = 199 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 47/182 (25%) Query: 179 NLMRIKKLLEQK-MGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRIN 236 + + +G+ +L +I + +L +G V + T ++++ Sbjct: 52 SFQQQAWQDHFDELGVGCMLADISSRALHYWGGDGVTYRLFPSSVPMTEELTKRGYTKVV 111 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 R NP W S+ ++D P+ Sbjct: 112 RKAKNPSWTPTASMRERD---------------------------------------PSL 132 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 R + G N + + + +H T + R +SGC+ + N + L Sbjct: 133 PLRMEGGAGNPLGTRAMYLSWP-AYLVHGTHDTRKIG---RQSSSGCIGLYNQHVEALYE 188 Query: 355 WL 356 + Sbjct: 189 MV 190 >gi|228951250|ref|ZP_04113362.1| hypothetical protein bthur0006_6730 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808448|gb|EEM54955.1| hypothetical protein bthur0006_6730 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 226 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 40 TKFKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 95 Query: 347 RN 348 + Sbjct: 96 HD 97 >gi|229188960|ref|ZP_04315989.1| hypothetical protein bcere0002_6470 [Bacillus cereus ATCC 10876] gi|228594510|gb|EEK52300.1| hypothetical protein bcere0002_6470 [Bacillus cereus ATCC 10876] Length = 226 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 40 TKFKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 95 Query: 347 RN 348 + Sbjct: 96 HD 97 >gi|73662628|ref|YP_301409.1| carboxy-terminal processing protease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|94709230|sp|Q49XN1|CTPAL_STAS1 RecName: Full=Probable CtpA-like serine protease gi|72495143|dbj|BAE18464.1| carboxy-terminal processing protease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 491 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + LG+ +V+ ++ L + G S FD+ +E A+K FQ ++ LD +G Sbjct: 403 SNKTYQLGDDDKNVKTMKVGLNVLGY--HINNHSTEFDSELEDALKSFQKKNNLDVNGTF 460 Query: 158 DSSTLEAMNVPVDLRIRQ 175 + ST E + + + Sbjct: 461 NKSTNEKFTQQLVEKANK 478 >gi|120536902|ref|YP_956960.1| peptidoglycan binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120326736|gb|ABM21045.1| Peptidoglycan-binding domain 1 protein [Marinobacter aquaeolei VT8] Length = 528 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ S V++L+E L + F A+K Q HGLD +G Sbjct: 368 KVADIKTKPPKSPKEVKQLQETLKALNY--RPGPVDGIFGKQTRWAIKRLQQEHGLDITG 425 Query: 156 MVDSSTLEAMNVPVD 170 ++ TL A+ P Sbjct: 426 WLNPETLAALENPKK 440 >gi|110347210|ref|YP_666028.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110283321|gb|ABG61381.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 199 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 47/201 (23%) Query: 166 NVPVDLRIRQLQVN--LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 VPV L +V+ + + + ++VN L VE G +R V VG Sbjct: 33 PVPVALNAENYRVDPRYRKQRVPYDGGEAPGTIVVNTSEFYLYHVEEGGWAMRYGVGVGE 92 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 T ++I R P W ++ L+ + G E Sbjct: 93 QG-LTLKGKAKIGRKAEWPSWTPTANM---------------LRRKPHLVQYAGGVE--- 133 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFET 340 G N + + + R+ + +H T EP N + + Sbjct: 134 ------------------GGLNNPLGARALYLYRGGRDTMFRIHGTNEPWSIGNAM---S 172 Query: 341 SGCVRVRNIIDLDVWLLKDTP 361 SGC+R+ N D+ L + TP Sbjct: 173 SGCIRLTN-DDIVD-LYERTP 191 >gi|260462745|ref|ZP_05810950.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259031389|gb|EEW32660.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 8/90 (8%) Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDT 326 +I + E ++ PE F +PG N + + + +++ +H + Sbjct: 108 HIAIKREWPTWTPPSQMIKRQPELAKFASGMEPGLKNPLGARAMYLFNKGGDMGYRLHGS 167 Query: 327 PEPILFNNVVRFETSGCVRV--RNIIDLDV 354 PE + +SGC+R+ +++IDL Sbjct: 168 PEWNSIGKAM---SSGCIRLMNQDVIDLYD 194 >gi|125972839|ref|YP_001036749.1| ErfK/YbiS/YcfS/YnhG [Clostridium thermocellum ATCC 27405] gi|256005881|ref|ZP_05430828.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 2360] gi|125713064|gb|ABN51556.1| ErfK/YbiS/YcfS/YnhG [Clostridium thermocellum ATCC 27405] gi|255990150|gb|EEU00285.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 2360] gi|316940925|gb|ADU74959.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 1313] Length = 230 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 17/103 (16%) Query: 265 YLKDNNIHMID---EKGKEVFVEEVD-WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 YL + + + GK W ++ + + Sbjct: 46 YLYKDGVLLKTYPVSGGKPETPSPEGTWKIISKSDW--------GGNFGGSWMGLNVPWG 97 Query: 321 -TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +H T P + GC+R+ +N +L + T Sbjct: 98 QYGIHGTKYPWYIGRQN--ASHGCIRMYNKNAKELYDIVPYGT 138 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L G+ V ++++ L G S F ++ +V FQ + + +G V Sbjct: 148 PFKELKSGDVGSDVLKVQKALKKLGYFH--DWPSGKFQDNLKKSVIKFQKDNKIKVTGTV 205 Query: 158 DSSTLEAMNVPVDLRIR 174 + S + + +++ Sbjct: 206 NKSLYNLIMKKYEEKMQ 222 >gi|297804958|ref|XP_002870363.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316199|gb|EFH46622.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 394 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ VQ L+E L+ G + + +F + SAVK +Q G+ G++ + Sbjct: 184 TLKVGSEGDDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGIMTA 243 Query: 160 STLEAM 165 L+ + Sbjct: 244 ELLQRL 249 >gi|228910869|ref|ZP_04074678.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis IBL 200] gi|228848820|gb|EEM93665.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis IBL 200] Length = 153 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 35/160 (21%), Gaps = 59/160 (36%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++ ++GK TV G+ TP +I + N + I D Sbjct: 39 KMDYYQDGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD--------- 88 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY- 322 N + + Sbjct: 89 ----------------------------------------PRNPLGDRWLGLNMAGTYGT 108 Query: 323 ---MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 109 TYAIHGTNNNQAIGK---ATTLGCIRMYNND--IHWLFER 143 >gi|323135942|ref|ZP_08071025.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322399033|gb|EFY01552.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 205 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 52/186 (27%), Gaps = 46/186 (24%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A D R + + + R + K V+++ L V +R V VG Sbjct: 46 AAAPQTQDGRPQAVAIP--REVVSFDAKYAPGTVVISTNERRLYYVLGDGQAIRYGVGVG 103 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R + I+ P W P ++++ Sbjct: 104 RPGFE-WSGTRFISSKREWPDWTPPAQMLKRR---------------------------- 134 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 P+ + G N + + + +H + EP +SG Sbjct: 135 -----------PDLPRHMEGGLNNPLGARAMYLS-GTLYRIHGSNEPETIGQ---AVSSG 179 Query: 343 CVRVRN 348 C+R+ N Sbjct: 180 CIRMTN 185 >gi|291537294|emb|CBL10406.1| Putative peptidoglycan-binding domain-containing protein [Roseburia intestinalis M50/1] Length = 419 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 WP + L +G++ V++++E R+ S P+ + AV++FQ G Sbjct: 334 WPRV---DLTIGSTGEKVRQIQEELARISRSYPAIPTVTPDGIYGPATREAVEVFQRVFG 390 Query: 151 LDPSGMVDSSTL 162 L +G++D T Sbjct: 391 LPVTGVIDYRTW 402 >gi|289644092|ref|ZP_06476188.1| Peptidoglycan-binding domain 1 protein [Frankia symbiont of Datisca glomerata] gi|289506092|gb|EFD27095.1| Peptidoglycan-binding domain 1 protein [Frankia symbiont of Datisca glomerata] Length = 146 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S VQ ++ L G S + F E+AV+ FQ G+ G V + A Sbjct: 11 GSSGEPVQTIQYLLRAHGY---SVTVDGVFGPATEAAVRAFQSSAGIVVDGAVGDQSWPA 67 Query: 165 MNVPVDL 171 + + V Sbjct: 68 LIITVRD 74 Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 5/105 (4%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNS---SVSVQRLRERL-IISGD 123 P A A + WP L + G+ +V+ ++++ D Sbjct: 39 PATEAAVRAFQSSAGIVVDGAVGDQSWPALI-ITVRDGDRSEKGDAVRAVQDQANARISD 97 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + F ++ V+ FQ G+ G+V +T + Sbjct: 98 PGNFLPVDGVFGRRTDAWVRGFQQHAGITVDGIVGPTTWNRLVKD 142 >gi|229149086|ref|ZP_04277327.1| hypothetical protein bcere0011_6510 [Bacillus cereus m1550] gi|228634285|gb|EEK90873.1| hypothetical protein bcere0011_6510 [Bacillus cereus m1550] Length = 219 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 33 TKFKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|206967885|ref|ZP_03228841.1| conserved domain protein [Bacillus cereus AH1134] gi|229177277|ref|ZP_04304661.1| hypothetical protein bcere0005_6490 [Bacillus cereus 172560W] gi|206736805|gb|EDZ53952.1| conserved domain protein [Bacillus cereus AH1134] gi|228606156|gb|EEK63593.1| hypothetical protein bcere0005_6490 [Bacillus cereus 172560W] Length = 219 Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 33 TKFKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|229068435|ref|ZP_04201736.1| hypothetical protein bcere0025_6490 [Bacillus cereus F65185] gi|229078057|ref|ZP_04210663.1| hypothetical protein bcere0023_7460 [Bacillus cereus Rock4-2] gi|228705243|gb|EEL57623.1| hypothetical protein bcere0023_7460 [Bacillus cereus Rock4-2] gi|228714577|gb|EEL66451.1| hypothetical protein bcere0025_6490 [Bacillus cereus F65185] Length = 219 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 33 TKFKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|86139270|ref|ZP_01057840.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. MED193] gi|85824114|gb|EAQ44319.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. MED193] Length = 193 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 298 FRQDPGKINAMASTKIEFY-SRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 + Q G N + + + Y + +TY +H T +P + ++GC+R+ ++ DL Sbjct: 124 YVQPGGPDNPLGARALYLYQNGVDTYFRIHGTTQPETIGSS---ASNGCIRMLNEHVTDL 180 Query: 353 DVWLLKDTP 361 + T Sbjct: 181 YERVPIGTK 189 >gi|217979967|ref|YP_002364114.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217505343|gb|ACK52752.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 257 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 49/187 (26%) Query: 170 DLRIRQLQVNLMRIK---KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 D R +L VN + ++++ + L V+ G ++ + VGR Sbjct: 97 DPRSSELAVNHNQRTAMVVPNPTNEPPGTIVIDTHSRHLYLVQPGGRAIQYGIGVGRQGF 156 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 + +RI R P W+ P+ ++ + Sbjct: 157 E-WKGTARIGRKAEWPRWIPPKEMLARR-------------------------------- 183 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGC 343 P+ D G N + + + +++ + +H T EP +SGC Sbjct: 184 -------PDLPDSMDGGLENPLGARALYLYQGNKDTLFRIHGTNEPNTIGQ---AVSSGC 233 Query: 344 VRVRNII 350 +R+ N Sbjct: 234 IRMMNAD 240 >gi|218517106|ref|ZP_03513946.1| hypothetical protein Retl8_27948 [Rhizobium etli 8C-3] Length = 210 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 47/187 (25%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L + K +R V VGR + + I+ P W P + ++ Sbjct: 67 LYVIMENKTAIRYGVGVGREGFK-WFGRATIDAKSLWPRWTPPPEMRKRH---------- 115 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NT 321 P F N + + + Sbjct: 116 ----------------------------PELPEFVDGGSPKNPLGPRAMYLHRDGVDTGY 147 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 H T EP +SGC+R+ N +D L + P + + + + + + Sbjct: 148 RFHGTLEPWSIGKD---ASSGCIRMFNEDAID--LYQRCPIGTAVQVLPHIADQAESTTQ 202 Query: 382 LATEVPV 388 ++ PV Sbjct: 203 VSQTTPV 209 >gi|39937854|ref|NP_950130.1| ErfK/YbiS/YcfS/YnhG protein [Rhodopseudomonas palustris CGA009] gi|192293639|ref|YP_001994244.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] gi|39651714|emb|CAE30236.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] gi|192287388|gb|ACF03769.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 197 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 51/192 (26%), Gaps = 48/192 (25%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + ++V L V+ LR + VGR T +I+R Sbjct: 50 QKQMVYFRTTEAPGTIIVQTSERYLYLVQGNNRALRYGIGVGREG-FTWQGLLKISRKAE 108 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P WV P +IQ+ P Sbjct: 109 WPDWVPPPEMIQRQ---------------------------------------PYLPRFM 129 Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLL 357 G N + + + S Y +H T P +SGC R+ N DL + Sbjct: 130 AGGPGNPLGARAMYLGS--TVYRIHGTNRPDTIGT---AISSGCFRLVNADVMDLYARVP 184 Query: 358 KDTPTWSRYHIE 369 T R E Sbjct: 185 VGTKVVVRQRPE 196 >gi|33863542|ref|NP_895102.1| hypothetical protein PMT1274 [Prochlorococcus marinus str. MIT 9313] gi|33640991|emb|CAE21449.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 219 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 51/158 (32%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + + +G+ V +G TP ++ + NP + +S Sbjct: 99 REISVIRDGEKLGPWPVAIGDPRTPTPTGVFKVENKVINPQYQSTKS------------- 145 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNN 320 V G + + I F +N Sbjct: 146 ----------------GRVNPAI-----------------GVASPLGDRWIGFLQSGQNQ 172 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 +H TP P N T+GCVR+ ++ L + Sbjct: 173 FGIHGTPWPYWVN-AKAAVTNGCVRMLHAHVRQLFDVV 209 >gi|229042620|ref|ZP_04190361.1| hypothetical protein bcere0027_6830 [Bacillus cereus AH676] gi|229126184|ref|ZP_04255202.1| hypothetical protein bcere0015_6440 [Bacillus cereus BDRD-Cer4] gi|229143473|ref|ZP_04271899.1| hypothetical protein bcere0012_6410 [Bacillus cereus BDRD-ST24] gi|296501494|ref|YP_003663194.1| protein ErfK/SrfK precursor [Bacillus thuringiensis BMB171] gi|228639975|gb|EEK96379.1| hypothetical protein bcere0012_6410 [Bacillus cereus BDRD-ST24] gi|228657176|gb|EEL12996.1| hypothetical protein bcere0015_6440 [Bacillus cereus BDRD-Cer4] gi|228726713|gb|EEL77929.1| hypothetical protein bcere0027_6830 [Bacillus cereus AH676] gi|296322546|gb|ADH05474.1| protein erfK/srfK precursor [Bacillus thuringiensis BMB171] Length = 219 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 33 TKFKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|222147895|ref|YP_002548852.1| hypothetical protein Avi_1187 [Agrobacterium vitis S4] gi|221734883|gb|ACM35846.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 251 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 42/191 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +Q+ R + ++V+ P L VE G +R V +GR Sbjct: 86 PAIPYQQIPPRYYRQRVSDPTGYPAGSIVVDTPNRFLYLVEQGGTAMRYGVGIGREGFA- 144 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + L + Y N Sbjct: 145 WQGEGVIQWRQKWPKWTPPDEMVARQ--PQLAK---YSSANGGM---------------- 183 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVR 345 PG +N + + + F + + +H +PE + +SGCVR Sbjct: 184 ------------APGLMNPLGARALYIFQNGQDTLYRLHGSPEWNSIGKAM---SSGCVR 228 Query: 346 V--RNIIDLDV 354 + ++IIDL Sbjct: 229 LMNQDIIDLYD 239 >gi|332716120|ref|YP_004443586.1| hypothetical protein AGROH133_11229 [Agrobacterium sp. H13-3] gi|325062805|gb|ADY66495.1| hypothetical protein AGROH133_11229 [Agrobacterium sp. H13-3] Length = 261 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ +++ +R ++V+ L +R V +GR + Sbjct: 60 PEIPYKRIPRQFLRQMVENPTGERPGIIVVDTANHFLYLTYENNQAMRYGVGLGRAGFE- 118 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P +I + L P ++ + Sbjct: 119 WAGRGVIQYKRQWPRWTPPDEMIARQ--PELE--PYSGRNGGME---------------- 158 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 PG N + + + ++ Y +H +PE +SGCVR Sbjct: 159 -------------PGLKNPLGARALYIFKDGKDTIYRLHGSPEWWTIGKS---VSSGCVR 202 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++I+DL + TP Sbjct: 203 LLNQDIVDLYNRVPDGTP 220 >gi|229108356|ref|ZP_04237973.1| hypothetical protein bcere0018_6420 [Bacillus cereus Rock1-15] gi|228674983|gb|EEL30210.1| hypothetical protein bcere0018_6420 [Bacillus cereus Rock1-15] Length = 219 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ PG N + + + +N +H T + ++GC+R+ Sbjct: 33 TKFKNKEYHRKKIPGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|225575215|ref|ZP_03783825.1| hypothetical protein RUMHYD_03304 [Blautia hydrogenotrophica DSM 10507] gi|225037508|gb|EEG47754.1| hypothetical protein RUMHYD_03304 [Blautia hydrogenotrophica DSM 10507] Length = 619 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 I++ G L G+ +V+ ++ LI G G F + A + FQ Sbjct: 376 IVTSGSSETPTKDFLCEGDQGEAVRVYQKNLISIGYDCGKNGADGDFGPATKEATQEFQG 435 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 +GL G +T ++ + +I Q Q R Sbjct: 436 DYGLVQDGNAGPATQAKLDAEIK-KIGQTQKGFAR 469 >gi|116253575|ref|YP_769413.1| ErfK/YbiS/YhnG oxidoreductase [Rhizobium leguminosarum bv. viciae 3841] gi|115258223|emb|CAK09324.1| putative ErfK/YbiS/YhnG oxidoreductase [Rhizobium leguminosarum bv. viciae 3841] Length = 195 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 295 NFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + G +N + + + Y +H T P R ++GC+R+ N Sbjct: 123 KYADGVPGGPLNPLGAAALYLYQGGQDTLFRLHGTNAPWSIG---RAVSNGCIRLTNA 177 >gi|158311949|ref|YP_001504457.1| peptidoglycan binding domain-containing protein [Frankia sp. EAN1pec] gi|158107354|gb|ABW09551.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EAN1pec] Length = 408 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P R L G V+ L L G + FDA SAV+ +Q + GL G V Sbjct: 167 PYRTLATGTVGSDVKELEASLQELGY--TGFAVDDTFDAATASAVQAWQAKSGLPAQGTV 224 Query: 158 DSSTLEAMNVPVDLRIRQLQV 178 + + + + ++ + V Sbjct: 225 SPDQIFVHDGDIRVALQAIPV 245 >gi|290956378|ref|YP_003487560.1| penicillin-binding membrane protein [Streptomyces scabiei 87.22] gi|260645904|emb|CBG68995.1| putative penicillin-binding membrane protein [Streptomyces scabiei 87.22] Length = 356 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 16/108 (14%) Query: 70 ISKETIAQTEKAIAFYQ----DILSRGGWPELPIR-----------PLHLGNSSVSVQRL 114 T A+ + + I+ W L L G+ +V++L Sbjct: 245 FGPATDARVREYQRRVEIIVDGIVGPQTWGMLTDGELAQEASAGTPTLQQGSHGPAVRKL 304 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + RL+ D + F + V+ FQ R + G+V T Sbjct: 305 Q-RLLNDHLPDLQLAVDGRFGPVTDGRVRQFQQRFAIVVDGIVGPQTW 351 >gi|91228363|ref|ZP_01262290.1| putative general secretion pathway protein A [Vibrio alginolyticus 12G01] gi|91188062|gb|EAS74367.1| putative general secretion pathway protein A [Vibrio alginolyticus 12G01] Length = 538 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L L +++ L L + + + FD ++ V+LFQ G+ G+ Sbjct: 456 ETLRLDMEGPAIEVLDRLLAEA--VSEPLLETSIFDGAMKERVELFQRWQGIGVDGIAGK 513 Query: 160 STLEAMNVPVDLRIRQLQ 177 TL+ + V QL Sbjct: 514 RTLDRLQQNVQPDAPQLA 531 >gi|303240529|ref|ZP_07327045.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] gi|302591931|gb|EFL61663.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] Length = 1456 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 11/99 (11%) Query: 110 SVQRLRERLIISGDL-------DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V L+++L+ G L ++ FD + AV+ +Q GL G+VD T Sbjct: 1016 DVIVLQKKLVTHGYLKMPIDQYTKTQVPFGTFDEVTKEAVEQYQSDKGLYVDGVVDKDTW 1075 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 A+ +P D Q R G + P Sbjct: 1076 IALTLPWDNENAQ----PDRSSWTYGYIFGNNSFYMVNP 1110 >gi|229032672|ref|ZP_04188635.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH1271] gi|228728671|gb|EEL79684.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH1271] Length = 153 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 39/169 (23%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFERIP 145 >gi|194100645|ref|YP_002003394.1| gp36 [Mycobacterium phage Predator] gi|192758361|gb|ACF05133.1| gp36 [Mycobacterium phage Predator] Length = 318 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 28/150 (18%) Query: 34 SVLDEIINESY----------HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 S +D+++ + F+ A G + + + Sbjct: 105 SAVDQVVADFRGIIEFGGNWTSPRDEMHFELHFAEGHQGTEDLA--------NELRAGL- 155 Query: 84 FYQDILSRGGWPE-----LPIRPLHLGNSSVSVQRLRERLIIS--GDLDPSKGLSVAFDA 136 I + GG P P L +G++ V L++++ F Sbjct: 156 --WGIWAPGGAPTDPPANTPDGYLQIGSTGDQVLYLQQKMNKVFGNYKAMPLDEDGIFGP 213 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +AV FQ R + G+V T + + Sbjct: 214 MTANAVSEFQSRSLISVDGIVGPETKKRLA 243 >gi|218901943|ref|YP_002449777.1| hypothetical protein BCAH820_0825 [Bacillus cereus AH820] gi|218538030|gb|ACK90428.1| conserved domain protein [Bacillus cereus AH820] Length = 253 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEE----VDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + ++ N + + + E ++ + + N + + + Sbjct: 35 LSFFENGNYTKTFPVTTGRDRTPTPEGNFCIINKYKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|163744000|ref|ZP_02151369.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Phaeobacter gallaeciensis 2.10] gi|161382760|gb|EDQ07160.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Phaeobacter gallaeciensis 2.10] Length = 158 Score = 53.1 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 8/72 (11%) Query: 295 NFIFRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN--I 349 + + Q G N + + + F + +TY +H T +P + ++GC+R+ N I Sbjct: 86 DNKYIQPGGTDNPLGARALYLFQNGIDTYFRIHGTNQPQTIGHS---VSNGCIRMTNEHI 142 Query: 350 IDLDVWLLKDTP 361 +DL + T Sbjct: 143 VDLYERVPLGTV 154 >gi|254426139|ref|ZP_05039856.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196188562|gb|EDX83527.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 1128 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 34/130 (26%), Gaps = 10/130 (7%) Query: 101 PLHLGN---SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S V++ + + G + + +S + FQ + GLD G+V Sbjct: 712 TYRPGAEMISGNRVKQWQRAMRRQGY---DIAVDGIYGPQSQSVARQFQRKKGLDTDGIV 768 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T A RQ + + + A E N K Sbjct: 769 GPKTWAASLRSKPSNPRQ---ADAKEGWTNIKDNRPKPSNPRQADAK-EGWTNIKDNQSK 824 Query: 218 TVIVGRVDRQ 227 R Sbjct: 825 PSNFPRPSNP 834 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 6/78 (7%) Query: 101 PLHLGN---SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S V++ + + G + + +S + FQ + GLD G+V Sbjct: 592 TYRPGAEMISGNRVKQWQRAMRRQGY---DIAVDGIYGPQSQSVARQFQRKKGLDTDGIV 648 Query: 158 DSSTLEAMNVPVDLRIRQ 175 T A RQ Sbjct: 649 GPKTWAASLRSKPSNPRQ 666 >gi|147677831|ref|YP_001212046.1| hypothetical protein PTH_1496 [Pelotomaculum thermopropionicum SI] gi|146273928|dbj|BAF59677.1| Uncharacterized protein conserved in bacteria [Pelotomaculum thermopropionicum SI] Length = 412 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 12/76 (15%) Query: 305 INAMASTKIEF----YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 N + + + ++ +H +P + TSGCVR+ N L WL Sbjct: 93 ENPLGPRWLGLDALGTNGSSYGLHGNNDPPSIGT---YATSGCVRMHNQDIL--WLYDRV 147 Query: 361 PTWSRYHIEEVVKTRK 376 P + I + + + Sbjct: 148 PVGTEVEI---INSGE 160 >gi|46203960|ref|ZP_00050704.2| COG1376: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 194 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 45/167 (26%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R K ++V+ L V G +R V VGR + I Sbjct: 52 RETVAYAGKEKPGTIVVSTSQRRLYYVLGGGEAIRYGVGVGRQG-FSWSGTKTITGKKEW 110 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++ + P+ Sbjct: 111 PAWRPPAQMLARR---------------------------------------PDLPRYMA 131 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G+ N + + + S +H + EP +SGC+R+ N Sbjct: 132 GGQDNPLGARAMYLGSS-LYRIHGSNEPETMGA---AVSSGCIRMTN 174 >gi|327440793|dbj|BAK17158.1| cell wall hydrolyses [Solibacillus silvestris StLB046] Length = 260 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL + + F A++ FQ ++GL G Sbjct: 21 AFSGQDVQRGAFGDDVIELQARLQYLSYY--NGKIDGKFGYGTYWALRNFQEQYGLPVDG 78 Query: 156 MVDSSTLEAMN 166 + ST E + Sbjct: 79 IAGRSTKEKLE 89 >gi|320157464|ref|YP_004189843.1| general secretion pathway protein A/General secretion pathway protein B [Vibrio vulnificus MO6-24/O] gi|319932776|gb|ADV87640.1| general secretion pathway protein A / General secretion pathway protein B [Vibrio vulnificus MO6-24/O] Length = 718 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L LG ++ L + L + L+ + F+A + V+ FQ + Sbjct: 456 WPMPLRETLRLGMHGEAIAVLDQLLAKA--LNDEPLKTTQFNAELMQRVEWFQRWQAMTE 513 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 G+ TL R++ + ++ + + + P Sbjct: 514 DGIAGQRTLA--------RLQHMVSLSEPWREFTKAEKQGEEQAMRYPEF 555 >gi|212638914|ref|YP_002315434.1| germination-specific spore cortex-lytic enzyme [Anoxybacillus flavithermus WK1] gi|212560394|gb|ACJ33449.1| Germination-specific spore cortex-lytic enzyme [Anoxybacillus flavithermus WK1] Length = 305 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 2/92 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + F A++ FQ + L G Sbjct: 46 AFSKQVIQRGAVGDDVIELQARLQYLGFY--RGKIDGVFSWRTYWALRNFQYKFKLPVDG 103 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + +T + + + NL + Sbjct: 104 LAGEATKQKLVRASKYYKSFVHSNLRKGNTFT 135 >gi|251799935|ref|YP_003014666.1| peptidoglycan-binding protein [Paenibacillus sp. JDR-2] gi|247547561|gb|ACT04580.1| Peptidoglycan-binding domain 1 protein [Paenibacillus sp. JDR-2] Length = 336 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + ++ L G S ++ +D VK +Q HGL +G VDS T ++ Sbjct: 48 GAKGPDIYVIQGMLKGIG--SYSGKINGYYDNTTVRGVKHYQKTHGLPVTGSVDSKTFQS 105 Query: 165 MNVP 168 + Sbjct: 106 ITYS 109 >gi|82751011|ref|YP_416752.1| carboxy-terminal processing proteinase [Staphylococcus aureus RF122] gi|94708711|sp|Q2YXZ9|CTPAL_STAAB RecName: Full=Probable CtpA-like serine protease gi|82656542|emb|CAI80964.1| carboxy-terminal processing proteinase [Staphylococcus aureus RF122] Length = 496 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQTNKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|304391376|ref|ZP_07373318.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] gi|303295605|gb|EFL89963.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] Length = 261 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 11/152 (7%) Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 + + K LR V +R IL ++ Y + P + +A+ ++ + Sbjct: 87 DYTKMNKRYLRQEVAYFGAERPGTIL---VDARRKFLYLIQPNKTAIRYGIAVGKEGYGW 143 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY- 322 ++ + + +E+ PE + G N + + + ++ Y Sbjct: 144 TGNSILQWKQKWPTWTPPKEMIERKPELAKYAEGLGGGSDNPLGARAMYLFKNGKDTLYR 203 Query: 323 MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 +H T +P +SGC R+ +++IDL Sbjct: 204 IHGTNKPYSIGK---AASSGCFRMINQDVIDL 232 >gi|260462117|ref|ZP_05810361.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259031977|gb|EEW33244.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 263 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 43/183 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + +L +R ++V+ L V++G +R V +G+ Sbjct: 70 PAIPVTKLDPKFVRQVVADPTGEKPGTIVVDTSEHFLYLVQDGGKAVRYGVSLGKAG-FG 128 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +IQ+ L + Sbjct: 129 WTGSAVVQARKKWPVWTPPPEMIQRR--PELAK--------------------------- 159 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + PG + + + + ++ Y +H TPE +SGCVR Sbjct: 160 -------YKDGMPPGPKSPLGARALYLFRDGKDTMYRLHGTPEWDSIGKN---ASSGCVR 209 Query: 346 VRN 348 N Sbjct: 210 FMN 212 >gi|47567076|ref|ZP_00237793.1| protein erfK/srfK precursor [Bacillus cereus G9241] gi|47556394|gb|EAL14728.1| protein erfK/srfK precursor [Bacillus cereus G9241] Length = 153 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 38/169 (22%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWTTL---GCIRMYNND--IHWLFERIP 145 >gi|323488226|ref|ZP_08093476.1| putative spore cortex-lytic enzyme precursor [Planococcus donghaensis MPA1U2] gi|323398084|gb|EGA90880.1| putative spore cortex-lytic enzyme precursor [Planococcus donghaensis MPA1U2] Length = 207 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 LH+G S V+ L+ +L G S + ++AV FQ + +G Sbjct: 28 APNLHVGVSGEGVKELQIKLKKLGYFSTSAT--GYYGPVTKNAVIEFQRDFNVSATGFTG 85 Query: 159 SSTLEAMN 166 T + Sbjct: 86 PLTRARLA 93 >gi|196036616|ref|ZP_03104010.1| conserved domain protein [Bacillus cereus W] gi|229120395|ref|ZP_04249642.1| hypothetical protein bcere0016_7070 [Bacillus cereus 95/8201] gi|195990816|gb|EDX54790.1| conserved domain protein [Bacillus cereus W] gi|228662980|gb|EEL18573.1| hypothetical protein bcere0016_7070 [Bacillus cereus 95/8201] Length = 253 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEE----VDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + ++ N + + + E ++ + + N + + + Sbjct: 35 LSFFENGNYTKTFPVTTGRDRTPTPEGNFCIINKYKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|49480296|ref|YP_035009.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331852|gb|AAT62498.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 253 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEE----VDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + ++ N + + + E ++ + + N + + + Sbjct: 35 LSFFENGNYTKTFPVTTGRDRTPTPEGNFCIINKYKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|242092574|ref|XP_002436777.1| hypothetical protein SORBIDRAFT_10g008650 [Sorghum bicolor] gi|241915000|gb|EER88144.1| hypothetical protein SORBIDRAFT_10g008650 [Sorghum bicolor] Length = 370 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G + ++++ L G L S G + FDA +E A+K++Q GLD +G +D+ST+ Sbjct: 59 GEQQQGLAKVKDYLSHFGYLPESSSGFNDLFDADLEEAIKVYQRNFGLDVTGAMDASTVA 118 Query: 164 AMNVP 168 M P Sbjct: 119 QMMAP 123 >gi|229816539|ref|ZP_04446838.1| hypothetical protein COLINT_03592 [Collinsella intestinalis DSM 13280] gi|229807874|gb|EEP43677.1| hypothetical protein COLINT_03592 [Collinsella intestinalis DSM 13280] Length = 302 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 12/84 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ V+ L+ L G F + E+A++ Sbjct: 65 WSALVDESYKLGDRTLYLRLPNFHGADVRALQRALNTLGF--ACGVDDGYFGPHTEAALQ 122 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ GL GM T +N Sbjct: 123 QFQENVGLFADGMAFQDTFNYVNR 146 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 P+ G +V+ ++ RL G + D ++ + F A +AV+ F+ + GLD VD Sbjct: 2 EPISQGMQGPAVEDVQTRLSSLGYMIDAAEMTAKEFGATTAAAVRAFRAQQGLDAGEDVD 61 Query: 159 SSTLEAM 165 + A+ Sbjct: 62 GTCWSAL 68 >gi|324328973|gb|ADY24233.1| hypothetical protein YBT020_25030 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 153 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 39/169 (23%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFERIP 145 >gi|42784218|ref|NP_981465.1| hypothetical protein BCE_5172 [Bacillus cereus ATCC 10987] gi|42740149|gb|AAS44073.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 153 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 38/169 (22%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWTTL---GCIRMYNND--IHWLFERIP 145 >gi|260426082|ref|ZP_05780061.1| ErfK/YbiS/YcfS/YnhG family protein [Citreicella sp. SE45] gi|260420574|gb|EEX13825.1| ErfK/YbiS/YcfS/YnhG family protein [Citreicella sp. SE45] Length = 186 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 52/196 (26%), Gaps = 53/196 (27%) Query: 167 VPVDLRIRQLQV------NLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTV 219 VP R + + + + +G ++ + + +L +G Sbjct: 24 VPARARAQGILRHNISSFTMQDWRDHF-DTLGKASIVADTSSRALHFWSADGSDYRVYPT 82 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 V + D T ++ I R + P W S +++ Sbjct: 83 SVPKTDELTKRGYTEIVRKVVGPSWTPTASQMERYP------------------------ 118 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 DW PG N + + + +H T + R Sbjct: 119 -------DWKPI---------PPGPDNPLGTHAMYLGWPAYI-IHGTHDTRKIG---RRS 158 Query: 340 TSGCVRVRNIIDLDVW 355 + GC+ + N + Sbjct: 159 SDGCIGLYN-EKIAEL 173 >gi|21230048|ref|NP_635965.1| hypothetical protein XCC0573 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769959|ref|YP_244721.1| hypothetical protein XC_3660 [Xanthomonas campestris pv. campestris str. 8004] gi|21111570|gb|AAM39889.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575291|gb|AAY50701.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 308 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L V +L++ L G D A+ AVK FQ HGL Sbjct: 105 TSGLLREKAHGAEVLKLQQTLQQLGYKDAKGNELNADGAYGQRTGEAVKAFQRAHGLQED 164 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V TL+A+ + + N Sbjct: 165 GVVGGDTLKALKQAEKTPLLSEKTN 189 >gi|312200483|ref|YP_004020544.1| peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] gi|311231819|gb|ADP84674.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] Length = 226 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V++L+ +L G + + F + V+ +Q HGL G+V T +A+ Sbjct: 171 DAVRQLQTKLSGLGY---TIAVDGYFGPQTDGVVRAYQGSHGLPADGVVGPQTHQAL 224 >gi|302390075|ref|YP_003825896.1| carboxyl-terminal protease [Thermosediminibacter oceani DSM 16646] gi|302200703|gb|ADL08273.1| carboxyl-terminal protease [Thermosediminibacter oceani DSM 16646] Length = 473 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P RPL G + V L++ L G + F+ + AV+ FQ + G + Sbjct: 370 PLKSTRPLKYGCIGLDVMGLQQHLRFLGLF--NGEPDGVFEQRTKKAVEDFQAKKGFPVN 427 Query: 155 GMVDSSTLEAMNVPVDLRIR-----QLQVNLMRIKKLLEQ 189 G+ D LEA++ V+ ++ QL+ L +K LL + Sbjct: 428 GIADEKLLEALDGAVNEALKSREDLQLKKALEVLKGLLTE 467 >gi|296330698|ref|ZP_06873175.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673955|ref|YP_003865627.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSZ protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152162|gb|EFG93034.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412199|gb|ADM37318.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSZ protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 317 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + +V++++ L + G+ + +AVK FQ Sbjct: 237 PLPSGVIKVTSPLTKGTNVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSV 296 Query: 149 HGLDPSGMVDSSTLEAMN 166 GL G+ T + Sbjct: 297 SGLTADGIYGPKTKAKIE 314 >gi|259046708|ref|ZP_05737109.1| carboxy-terminal processing peptidase [Granulicatella adiacens ATCC 49175] gi|259036604|gb|EEW37859.1| carboxy-terminal processing peptidase [Granulicatella adiacens ATCC 49175] Length = 497 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ S +V+ + L G FD+ AVK FQ G+ +G V+ T Sbjct: 415 KEGSVSDNVKTIETILKGLGY---DVKADGYFDSKTTEAVKQFQKSKGISETGEVNEQTG 471 Query: 163 EAM 165 A+ Sbjct: 472 SAL 474 >gi|37678756|ref|NP_933365.1| putative general secretion pathway protein A [Vibrio vulnificus YJ016] gi|37197497|dbj|BAC93336.1| putative general secretion pathway protein A [Vibrio vulnificus YJ016] Length = 718 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 10/110 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L LG ++ L + L + L+ + F+A + V+ FQ + Sbjct: 456 WPMPLRETLRLGMHGEAIAVLDQLLAKA--LNDEPLKTTQFNAELMQRVEWFQRWQAMTE 513 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 G+ TL R++ + + + + + P Sbjct: 514 DGIAGQRTLA--------RLQHMVSLSEPWRDFTKAEKQGEEQAMRYPEF 555 >gi|302336335|ref|YP_003801542.1| Peptidoglycan-binding domain 1 protein [Olsenella uli DSM 7084] gi|301320175|gb|ADK68662.1| Peptidoglycan-binding domain 1 protein [Olsenella uli DSM 7084] Length = 303 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 14/149 (9%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDI 88 PI + + + ++ A + S P Sbjct: 2 DPIREGASGAAVEDIQERLGRLGYEIDEAELAE--KSMGPSSVAAVAKFRLDQGMGLGTE 59 Query: 89 LSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + W L +G+ V +++ERL I G F Y Sbjct: 60 VDAPTWSALVDAGYTMGDRTLYLRLPNFHGNDVLQMQERLNILGF--SCGKPDGCFGVYT 117 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 E+AVK FQ G+ GM T ++++ Sbjct: 118 EAAVKEFQESQGMLADGMAFQDTFDSIDR 146 >gi|238063101|ref|ZP_04607810.1| Muramoyl-pentapeptide carboxypeptidase [Micromonospora sp. ATCC 39149] gi|237884912|gb|EEP73740.1| Muramoyl-pentapeptide carboxypeptidase [Micromonospora sp. ATCC 39149] Length = 242 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L+ G S V++L+ R+ + +AV+ FQ +GL G+ Sbjct: 19 TRDLYEGRSGEDVRQLQIRVAGWAGRRDIVETDGNYGPKTAAAVRRFQSAYGLPADGIAG 78 Query: 159 SSTLEAM 165 T + Sbjct: 79 PQTYTKL 85 >gi|229165690|ref|ZP_04293458.1| hypothetical protein bcere0007_6670 [Bacillus cereus AH621] gi|228617691|gb|EEK74748.1| hypothetical protein bcere0007_6670 [Bacillus cereus AH621] Length = 253 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 14/95 (14%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEEVDW---NSPEPPNFIFRQDPG--KINAMASTKI 313 + +D N + + + E D+ + + ++ PG N + + + Sbjct: 35 LSFFEDGNYTRTFPITTGRDRTPTPEG-DFCIITKYKNKEYHRKKIPGGAPNNPLGTRWL 93 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T + ++GC+R+ + Sbjct: 94 GLDKKE-YAIHGTNREGTIGSRE---SNGCIRMHD 124 >gi|197303250|ref|ZP_03168291.1| hypothetical protein RUMLAC_01973 [Ruminococcus lactaris ATCC 29176] gi|197297676|gb|EDY32235.1| hypothetical protein RUMLAC_01973 [Ruminococcus lactaris ATCC 29176] Length = 421 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V +++E+L + + P+ + AV+ FQ GL + Sbjct: 337 PGYTLEQGASGEKVLQMQEQLRVISEAYPAIPKVEADGIYGPATAQAVEKFQSVFGLPVT 396 Query: 155 GMVDSSTLEAMN 166 G VD ST ++ Sbjct: 397 GTVDYSTWYKIS 408 >gi|257082442|ref|ZP_05576803.1| carboxyl-terminal protease [Enterococcus faecalis E1Sol] gi|256990472|gb|EEU77774.1| carboxyl-terminal protease [Enterococcus faecalis E1Sol] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPITGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|229199180|ref|ZP_04325861.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus m1293] gi|228584286|gb|EEK42423.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus m1293] Length = 153 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 39/169 (23%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFERIP 145 >gi|218674467|ref|ZP_03524136.1| hypothetical protein RetlG_24852 [Rhizobium etli GR56] Length = 212 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 47/187 (25%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L + K +R V VGR + + I+ P W P + ++ Sbjct: 69 LYVIMENKTAIRYGVGVGREGFK-WFGRATIDAKSLWPRWTPPPEMRKRH---------- 117 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NT 321 P F N + + + Sbjct: 118 ----------------------------PELPEFVAGGSPKNPLGPRAMYLHRDGVDTGY 149 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 H T EP +SGC+R+ N +D L + P + + + + + + Sbjct: 150 RFHGTLEPWSIGKD---ASSGCIRMFNEDAID--LYQRCPIGTAVQVLPHIADQAESTTQ 204 Query: 382 LATEVPV 388 ++ PV Sbjct: 205 VSQTTPV 211 >gi|30249163|ref|NP_841233.1| peptidoglycan binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180482|emb|CAD85087.1| Putative peptidoglycan binding domain 1 [Nitrosomonas europaea ATCC 19718] Length = 262 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 10/97 (10%) Query: 74 TIAQTEKAIAFYQDI---LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + + + +A + + GG + LH G+ V L+E LI G S + Sbjct: 173 YLIKAKSELARIEGLVISADEGGNTMI----LHRGSFGAGVAELQELLINKGF---SLSI 225 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +F A E AV FQ + L+ +G+V+ +T + Sbjct: 226 DSSFGAATELAVMTFQKANSLEANGIVERNTWTRLRA 262 >gi|163942750|ref|YP_001647634.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus weihenstephanensis KBAB4] gi|163864947|gb|ABY46006.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus weihenstephanensis KBAB4] Length = 153 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 35/160 (21%), Gaps = 59/160 (36%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++ ++GK TV G+ TP +I + N + I D Sbjct: 39 KMDYYQDGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD--------- 88 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY- 322 N + + Sbjct: 89 ----------------------------------------PRNPLGDRWLGLNMAGTYGT 108 Query: 323 ---MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 109 TYAIHGTNNNQAIGK---ATTLGCIRMFNND--IHWLFER 143 >gi|170756455|ref|YP_001780389.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum B1 str. Okra] gi|169121667|gb|ACA45503.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum B1 str. Okra] Length = 234 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 98 PIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L + +V+ ++ +L G G++ F A+K FQ L G Sbjct: 162 PGYLLKYNPNSFDANVKAIQNKLQNIGYSVGKSGVNGYFGDGTLLAIKCFQRDCNLMIDG 221 Query: 156 MVDSSTLEAM 165 ++ +T + Sbjct: 222 VIGVNTWNRI 231 >gi|116492825|ref|YP_804560.1| periplasmic protease [Pediococcus pentosaceus ATCC 25745] gi|116102975|gb|ABJ68118.1| Periplasmic protease [Pediococcus pentosaceus ATCC 25745] Length = 472 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G S+ ++ ++ L G D +S + V+ AV+ +Q ++ L +G VD Sbjct: 382 KKTYSVGESNSDIKNIQIALKGLGYYD--DKISKEYTEKVKQAVEAYQEKNQLAVTGKVD 439 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + T+ ++ V + + L + +K++ + Sbjct: 440 AKTMRSIEQNVIKTLAKNDPALEKAQKVMNDEK 472 >gi|313897792|ref|ZP_07831333.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] gi|312957327|gb|EFR38954.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] Length = 169 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIIS---GDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + L G+ + V + + L + G ++ + E AV+ +Q L Sbjct: 2 MISTAALKPGSIGIGVNKQQAYLNMMQEKGFINTRNLQDGVYGTRTEQAVREWQRYANLP 61 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + + T +++ LR Q+ N+ Sbjct: 62 IDGEIGNDTWDSIV--NKLRDLQIVTNI 87 Score = 44.3 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERL---IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G +SV +++E L + + + V+ FQ + L+ G++ Sbjct: 96 LSSGAQGISVFKMQEYLNEIAAVNKCLRPIPVDGMYGPRTTTMVQQFQYLYDLNIDGVIG 155 Query: 159 SSTLEAM 165 +T +A+ Sbjct: 156 KATWDAI 162 >gi|304438000|ref|ZP_07397944.1| LysM domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368954|gb|EFM22635.1| LysM domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 256 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 50/173 (28%), Gaps = 21/173 (12%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +V+ ++E LI G L + A++ Q H L G+ +T Sbjct: 79 KEGMRGGAVKHVQELLIQGGYLAGAA--DGIAGPMTREAIERCQAAHQLTVDGICGEATY 136 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A++ D L + R + G + A A + G Sbjct: 137 HALSGGADYDPAALGIVEER---PPQVSRGGGRSVYVSATAY-SAYDPG----------- 181 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRS--IIQKDMMALLRQDPQYLKDNNIHM 273 T + ++ VIP + + +D Y N + Sbjct: 182 -NGSHTATGTLVRHGVIAVDPSVIPLGTHVFIPGYGEAVAEDIGYAI-NGYRI 232 >gi|114706955|ref|ZP_01439854.1| hypothetical protein FP2506_02849 [Fulvimarina pelagi HTCC2506] gi|114537505|gb|EAU40630.1| hypothetical protein FP2506_02849 [Fulvimarina pelagi HTCC2506] Length = 269 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 +++ G P+ + + + + L++ L +G + F +A++ FQ Sbjct: 72 LIATRGMPQPSLNTVEATKADPLLAELQQALAETGHYTR--AIDGRFGPGTRAAIERFQH 129 Query: 148 RHGLDPSGMVDSSTLEAMNV 167 +GL G ++ L + V Sbjct: 130 ENGLSVDGRPSTALLRQVKV 149 >gi|111222214|ref|YP_713008.1| putative N-acetylmuramoyl-L-alanine amidase [Frankia alni ACN14a] gi|111149746|emb|CAJ61438.1| putative N-acetylmuramoyl-L-alanine amidase precursor (Cell wall hydrolase) (Autolysin) [Frankia alni ACN14a] Length = 124 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%) Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 + G D + A+ +AV+ FQ RHGL P G V T + VPV Sbjct: 3 YLLGAHDLRVPVDGAYGPRTVTAVREFQTRHGLTPDGQVGQRTWPVLIVPVR 54 >gi|303246139|ref|ZP_07332420.1| Peptidoglycan-binding domain 1 protein [Desulfovibrio fructosovorans JJ] gi|302492535|gb|EFL52406.1| Peptidoglycan-binding domain 1 protein [Desulfovibrio fructosovorans JJ] Length = 579 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +V L++ L G + AF +AV FQ+ G++ G+V +T A+ Sbjct: 183 KGAAVVALQKAL--LGQGLDPGPIDGAFGPMTHAAVLSFQLMRGIEVDGVVGPATARALG 240 Query: 167 VP 168 +P Sbjct: 241 LP 242 >gi|329571926|gb|EGG53604.1| peptidase, S41 family [Enterococcus faecalis TX1467] Length = 484 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|315162340|gb|EFU06357.1| peptidase [Enterococcus faecalis TX0645] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|326779611|ref|ZP_08238876.1| Peptidoglycan-binding domain 1 protein [Streptomyces cf. griseus XylebKG-1] gi|326659944|gb|EGE44790.1| Peptidoglycan-binding domain 1 protein [Streptomyces cf. griseus XylebKG-1] Length = 399 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLDPS--GM 156 L G+ V L+ RL G+ S + ++ V +V ++Q + G+ Sbjct: 318 SSLRPGDRGPEVAELQTRLRTVGEWLYSGPVDGSSYSDQVAHSVAIYQSYKAIQGDPIGV 377 Query: 157 VDSSTLEAMNV 167 +T A+ Sbjct: 378 YGPNTRRALEQ 388 >gi|295113069|emb|CBL31706.1| C-terminal peptidase (prc) [Enterococcus sp. 7L76] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|294781608|ref|ZP_06746944.1| peptidase, S41 family [Enterococcus faecalis PC1.1] gi|294451304|gb|EFG19770.1| peptidase, S41 family [Enterococcus faecalis PC1.1] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|257419406|ref|ZP_05596400.1| predicted protein [Enterococcus faecalis T11] gi|257161234|gb|EEU91194.1| predicted protein [Enterococcus faecalis T11] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|257416201|ref|ZP_05593195.1| carboxyl-terminal protease [Enterococcus faecalis AR01/DG] gi|257158029|gb|EEU87989.1| carboxyl-terminal protease [Enterococcus faecalis ARO1/DG] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|257086967|ref|ZP_05581328.1| carboxyl-terminal protease [Enterococcus faecalis D6] gi|256994997|gb|EEU82299.1| carboxyl-terminal protease [Enterococcus faecalis D6] gi|315027837|gb|EFT39769.1| peptidase [Enterococcus faecalis TX2137] gi|315172408|gb|EFU16425.1| peptidase [Enterococcus faecalis TX1346] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|257085074|ref|ZP_05579435.1| carboxyl-terminal protease [Enterococcus faecalis Fly1] gi|256993104|gb|EEU80406.1| carboxyl-terminal protease [Enterococcus faecalis Fly1] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|256959090|ref|ZP_05563261.1| carboxyl-terminal protease [Enterococcus faecalis DS5] gi|257079121|ref|ZP_05573482.1| carboxyl-terminal protease [Enterococcus faecalis JH1] gi|307269492|ref|ZP_07550831.1| peptidase [Enterococcus faecalis TX4248] gi|256949586|gb|EEU66218.1| carboxyl-terminal protease [Enterococcus faecalis DS5] gi|256987151|gb|EEU74453.1| carboxyl-terminal protease [Enterococcus faecalis JH1] gi|306514112|gb|EFM82688.1| peptidase [Enterococcus faecalis TX4248] gi|315037093|gb|EFT49025.1| peptidase [Enterococcus faecalis TX0027] gi|315147375|gb|EFT91391.1| peptidase [Enterococcus faecalis TX4244] gi|327535245|gb|AEA94079.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis OG1RF] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|256762610|ref|ZP_05503190.1| carboxyl-terminal protease [Enterococcus faecalis T3] gi|257422502|ref|ZP_05599492.1| carboxyl-terminal protease [Enterococcus faecalis X98] gi|256683861|gb|EEU23556.1| carboxyl-terminal protease [Enterococcus faecalis T3] gi|257164326|gb|EEU94286.1| carboxyl-terminal protease [Enterococcus faecalis X98] gi|315156169|gb|EFU00186.1| peptidase [Enterococcus faecalis TX0043] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|255972683|ref|ZP_05423269.1| predicted protein [Enterococcus faecalis T1] gi|255963701|gb|EET96177.1| predicted protein [Enterococcus faecalis T1] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|229549899|ref|ZP_04438624.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis ATCC 29200] gi|256961817|ref|ZP_05565988.1| carboxyl-terminal protease [Enterococcus faecalis Merz96] gi|293389633|ref|ZP_06634088.1| carboxyl- protease [Enterococcus faecalis S613] gi|307289219|ref|ZP_07569175.1| peptidase [Enterococcus faecalis TX0109] gi|312907649|ref|ZP_07766640.1| peptidase [Enterococcus faecalis DAPTO 512] gi|312910266|ref|ZP_07769113.1| C-terminal processing peptidase [Enterococcus faecalis DAPTO 516] gi|312951611|ref|ZP_07770506.1| peptidase [Enterococcus faecalis TX0102] gi|229304972|gb|EEN70968.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis ATCC 29200] gi|256952313|gb|EEU68945.1| carboxyl-terminal protease [Enterococcus faecalis Merz96] gi|291081026|gb|EFE17989.1| carboxyl- protease [Enterococcus faecalis S613] gi|306499928|gb|EFM69289.1| peptidase [Enterococcus faecalis TX0109] gi|310626677|gb|EFQ09960.1| peptidase [Enterococcus faecalis DAPTO 512] gi|310630328|gb|EFQ13611.1| peptidase [Enterococcus faecalis TX0102] gi|311289539|gb|EFQ68095.1| C-terminal processing peptidase [Enterococcus faecalis DAPTO 516] gi|315152368|gb|EFT96384.1| peptidase [Enterococcus faecalis TX0031] gi|315158189|gb|EFU02206.1| peptidase [Enterococcus faecalis TX0312] gi|315164128|gb|EFU08145.1| peptidase [Enterococcus faecalis TX1302] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|227518870|ref|ZP_03948919.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis TX0104] gi|227073661|gb|EEI11624.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis TX0104] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|29376233|ref|NP_815387.1| carboxyl-terminal protease [Enterococcus faecalis V583] gi|293382880|ref|ZP_06628798.1| carboxyl- protease [Enterococcus faecalis R712] gi|29343696|gb|AAO81457.1| carboxyl-terminal protease [Enterococcus faecalis V583] gi|291079545|gb|EFE16909.1| carboxyl- protease [Enterococcus faecalis R712] gi|315576110|gb|EFU88301.1| peptidase [Enterococcus faecalis TX0309B] gi|315580684|gb|EFU92875.1| peptidase [Enterococcus faecalis TX0309A] gi|323480840|gb|ADX80279.1| carboxy-terminal processing proteinase [Enterococcus faecalis 62] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|218510142|ref|ZP_03508020.1| hypothetical protein RetlB5_23325 [Rhizobium etli Brasil 5] Length = 76 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 6/71 (8%) Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 + P G N + + I +H T +P +SGC R+ ++ Sbjct: 4 KNPRLPAVVKAGPANPLGTRAIYLADG-LLRIHGTNDPSSIGTN---ASSGCFRMYREDV 59 Query: 350 IDLDVWLLKDT 360 +L + T Sbjct: 60 EELYDMVQPGT 70 >gi|30682566|ref|NP_193103.2| PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5); heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] gi|119360137|gb|ABL66797.1| At4g13670 [Arabidopsis thaliana] gi|332657911|gb|AEE83311.1| protein plastid transcriptionally active 5 [Arabidopsis thaliana] Length = 387 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ VQ L+E L+ G + + +F + SAVK +Q G+ G++ + Sbjct: 178 LKVGSEGDDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGVMTAE 237 Query: 161 TLEAM 165 L+ + Sbjct: 238 LLQRL 242 >gi|309776324|ref|ZP_07671312.1| N-acetylmuramoyl-L-alanine amidase [Erysipelotrichaceae bacterium 3_1_53] gi|308915920|gb|EFP61672.1| N-acetylmuramoyl-L-alanine amidase [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y G+P L G+ V V L++ L G ++ L F SA+ Sbjct: 135 KRYGTPACSAGFP-----VLRNGSRGVYVLILQDALNALGY--STRTLDGVFGNNTRSAL 187 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 +Q +GL G+ T + Sbjct: 188 VAYQRENGLSADGVAGCGTWTRI 210 >gi|229089816|ref|ZP_04221071.1| hypothetical protein bcere0021_6540 [Bacillus cereus Rock3-42] gi|228693441|gb|EEL47147.1| hypothetical protein bcere0021_6540 [Bacillus cereus Rock3-42] Length = 253 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIE 314 + ++ N + + + E + + ++ G N + + + Sbjct: 35 LSFFENGNYTKTFPVTTGRDRTPTPEGNFCIITKYKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|217962509|ref|YP_002341081.1| hypothetical protein BCAH187_A5187 [Bacillus cereus AH187] gi|222098484|ref|YP_002532542.1| protein erfk/srfk precursor [Bacillus cereus Q1] gi|229142355|ref|ZP_04270874.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BDRD-ST26] gi|217063683|gb|ACJ77933.1| conserved hypothetical protein [Bacillus cereus AH187] gi|221242543|gb|ACM15253.1| protein erfK/srfK precursor [Bacillus cereus Q1] gi|228641125|gb|EEK97437.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BDRD-ST26] Length = 153 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 38/169 (22%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWTTL---GCIRMYNND--IHWLFERIP 145 >gi|281357197|ref|ZP_06243686.1| Peptidoglycan-binding domain 1 protein [Victivallis vadensis ATCC BAA-548] gi|281316228|gb|EFB00253.1| Peptidoglycan-binding domain 1 protein [Victivallis vadensis ATCC BAA-548] Length = 308 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 13/99 (13%) Query: 95 PELPIRP-------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLF 145 P +P + + G S V L L++ L +D +E +VK F Sbjct: 117 PVVPAKTYEYGERTIRSGMSGSDVATLATFLVLHKYLTMDVKPGKRVFYDWRIEESVKKF 176 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 Q L +G+ D+ T + + L + + Sbjct: 177 QRDANLPETGICDAQTAKKL----KEWEAILAERKEKER 211 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 15/92 (16%) Query: 79 EKAIAFYQD-ILSRGGWPELPIRPLHLGNSSVSV----------QRLRERLIISGDLDPS 127 ++ +A YQ+ I P +P + LG + + L +RL + Sbjct: 209 KERLAGYQEKITPITPIPVIPSKTFKLGMRDLRIGCTGEDVTDFISLLQRLNLLDY---- 264 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 FD VE+AVK +Q + G +G+ D Sbjct: 265 SESMDFFDTKVEAAVKKYQKQTGRTETGVADK 296 >gi|16078311|ref|NP_389128.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221309095|ref|ZP_03590942.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221313422|ref|ZP_03595227.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318345|ref|ZP_03599639.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322618|ref|ZP_03603912.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. SMY] gi|321314988|ref|YP_004207275.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|45477245|sp|O34391|XLYB_BACSU RecName: Full=N-acetylmuramoyl-L-alanine amidase XlyB; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|2633600|emb|CAB13103.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. subtilis str. 168] gi|2645866|gb|AAB87514.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|320021262|gb|ADV96248.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis BSn5] Length = 317 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + V++++ L + G+ + +AVK FQ Sbjct: 237 PLPSGVIKVTSPLTQGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSV 296 Query: 149 HGLDPSGMVDSSTLEAMN 166 GL G+ T M Sbjct: 297 SGLTADGIYGPKTKAKME 314 >gi|325123319|gb|ADY82842.1| hypothetical protein BDGL_002256 [Acinetobacter calcoaceticus PHEA-2] Length = 167 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GC+R+RN II+L + +D + Sbjct: 119 IYIHGTPDKEPMGVPM---SHGCIRMRNEEIIELFDLVAEDALVYLSEQ 164 >gi|224476551|ref|YP_002634157.1| putative protease [Staphylococcus carnosus subsp. carnosus TM300] gi|222421158|emb|CAL27972.1| putative protease [Staphylococcus carnosus subsp. carnosus TM300] Length = 489 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 I K + A YQ + +P L G+++ +V+ ++ L G + Sbjct: 377 IHGKGIQPDVKIAAPKYQSL------SMIPDDKILKEGDNNKNVKSIKIGLKALGY--DT 428 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + FD ++SA++ FQ + L+ +G D T Sbjct: 429 GEENNDFDGTLKSAIESFQKDNQLEVNGTFDKET 462 >gi|113952854|ref|YP_730932.1| ATP synthase [Synechococcus sp. CC9311] gi|113880205|gb|ABI45163.1| ATP synthase [Synechococcus sp. CC9311] Length = 197 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 52/160 (32%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + + +++ L+ +++G V R V +G + TP I R+ Sbjct: 67 RAEKTIEISLKDRYLKLLDSGVVVARYPVAIGAPESPTPAGSYEITRM------------ 114 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + +KGK + PG N + Sbjct: 115 ---EDAP---------------VYHKKGKVI-------------------APGPKNPVGV 137 Query: 311 TKI-EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 + F + Y +H T P N + GC+R+ N Sbjct: 138 RYMAYFQLGSGEYAIHGTAWPNWVNLRA-AVSLGCIRMLN 176 >gi|328554309|gb|AEB24801.1| N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens TA208] gi|328912705|gb|AEB64301.1| N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens LL3] Length = 250 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + V +++ L + + G+ + +AVK FQ Sbjct: 169 PLPSGIIKLTTPYTKGEKVTQVQRALAAAYFYPDKHAKNHGIDGIYGPKTANAVKRFQTM 228 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ T + + Sbjct: 229 NGLQADGIYGPKTKDKLEA 247 >gi|315168921|gb|EFU12938.1| peptidase [Enterococcus faecalis TX1341] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|312899528|ref|ZP_07758858.1| peptidase [Enterococcus faecalis TX0470] gi|311293398|gb|EFQ71954.1| peptidase [Enterococcus faecalis TX0470] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|312903429|ref|ZP_07762609.1| peptidase [Enterococcus faecalis TX0635] gi|310633305|gb|EFQ16588.1| peptidase [Enterococcus faecalis TX0635] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|307277953|ref|ZP_07559037.1| peptidase [Enterococcus faecalis TX0860] gi|306505350|gb|EFM74536.1| peptidase [Enterococcus faecalis TX0860] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|257089995|ref|ZP_05584356.1| predicted protein [Enterococcus faecalis CH188] gi|256998807|gb|EEU85327.1| predicted protein [Enterococcus faecalis CH188] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|256853236|ref|ZP_05558606.1| carboxyl-terminal protease [Enterococcus faecalis T8] gi|256711695|gb|EEU26733.1| carboxyl-terminal protease [Enterococcus faecalis T8] gi|315029270|gb|EFT41202.1| peptidase [Enterococcus faecalis TX4000] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|256619174|ref|ZP_05476020.1| carboxyl-terminal protease [Enterococcus faecalis ATCC 4200] gi|256598701|gb|EEU17877.1| carboxyl-terminal protease [Enterococcus faecalis ATCC 4200] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|255975735|ref|ZP_05426321.1| carboxyl-terminal protease [Enterococcus faecalis T2] gi|255968607|gb|EET99229.1| carboxyl-terminal protease [Enterococcus faecalis T2] Length = 480 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|300860306|ref|ZP_07106393.1| peptidase, S41 family [Enterococcus faecalis TUSoD Ef11] gi|307275859|ref|ZP_07556998.1| peptidase [Enterococcus faecalis TX2134] gi|300849345|gb|EFK77095.1| peptidase, S41 family [Enterococcus faecalis TUSoD Ef11] gi|306507551|gb|EFM76682.1| peptidase [Enterococcus faecalis TX2134] gi|315031956|gb|EFT43888.1| peptidase [Enterococcus faecalis TX0017] gi|315577763|gb|EFU89954.1| peptidase [Enterococcus faecalis TX0630] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|229545708|ref|ZP_04434433.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis TX1322] gi|307291882|ref|ZP_07571753.1| peptidase [Enterococcus faecalis TX0411] gi|229309158|gb|EEN75145.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis TX1322] gi|306497148|gb|EFM66694.1| peptidase [Enterococcus faecalis TX0411] Length = 477 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|27382340|ref|NP_773869.1| hypothetical protein bll7229 [Bradyrhizobium japonicum USDA 110] gi|27355511|dbj|BAC52494.1| bll7229 [Bradyrhizobium japonicum USDA 110] Length = 301 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 12/97 (12%) Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF-RQD-------PGKINAMAST 311 RQ +Y G++ + +W PP + RQ G N + + Sbjct: 142 RQAMRYGIGVGREGFAWSGEQTVARKAEWPDWHPPAEMVSRQPYLPRFMAGGPGNPLGAR 201 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T +P +SGC+R+ N Sbjct: 202 AMYLGETE-YRIHGTNKPDTIGKR---VSSGCIRLTN 234 >gi|323136242|ref|ZP_08071324.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322398316|gb|EFY00836.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 231 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 15/104 (14%) Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP--------GKINA 307 + + Y KG+ + W PP + ++ P G+ N Sbjct: 113 LPNGQAVR-YGIGVGREGFTWKGRVRIGRKESWPDWTPPKEMLKRRPDLPRHMAGGEDNP 171 Query: 308 MASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 + + + +R+ + +H + EP +SGC+R+ N Sbjct: 172 LGARAMYLYSGNRDTMFRIHGSNEPWTIGQ---AVSSGCIRMTN 212 >gi|254454510|ref|ZP_05067947.1| ErfK/YbiS/YcfS/YnhG family protein [Octadecabacter antarcticus 238] gi|198268916|gb|EDY93186.1| ErfK/YbiS/YcfS/YnhG family protein [Octadecabacter antarcticus 238] Length = 183 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 43/159 (27%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G +L +I + +L V + T +S+I R P W +S Sbjct: 49 TLGNGAILADITSRALHYWGADGSYRLYPSSVPMSEDLTRRGYSQIVRKRVGPTWTPTQS 108 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 + ++D P+ D G N + Sbjct: 109 MRERD---------------------------------------PSLPVMMDAGPGNPLG 129 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + +H T + R +SGC+ + N Sbjct: 130 THAMYLDWP-AYLIHGTHDTRKIG---RQSSSGCIGLYN 164 >gi|329731573|gb|EGG67935.1| peptidase, S41 family [Staphylococcus epidermidis VCU144] Length = 490 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G P + FD +ESA+K FQ + L +G D Sbjct: 404 KTYHQGEKDKNVKTMKIGLKALGY--PIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 461 Query: 160 ST 161 T Sbjct: 462 KT 463 >gi|251810854|ref|ZP_04825327.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis BCM-HMP0060] gi|282876140|ref|ZP_06285007.1| C-terminal processing peptidase [Staphylococcus epidermidis SK135] gi|251805534|gb|EES58191.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis BCM-HMP0060] gi|281295165|gb|EFA87692.1| C-terminal processing peptidase [Staphylococcus epidermidis SK135] gi|329737198|gb|EGG73452.1| peptidase, S41 family [Staphylococcus epidermidis VCU028] Length = 491 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G P + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--PIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|57866912|ref|YP_188573.1| carboxyl-terminal protease [Staphylococcus epidermidis RP62A] gi|81674603|sp|Q5HPB7|CTPAL_STAEQ RecName: Full=Probable CtpA-like serine protease gi|57637570|gb|AAW54358.1| carboxyl-terminal protease [Staphylococcus epidermidis RP62A] Length = 491 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G P + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--PIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|27468031|ref|NP_764668.1| carboxy-terminal processing protease [Staphylococcus epidermidis ATCC 12228] gi|293366606|ref|ZP_06613283.1| carboxy-terminal processing protease [Staphylococcus epidermidis M23864:W2(grey)] gi|81843763|sp|Q8CSK8|CTPAL_STAES RecName: Full=Probable CtpA-like serine protease gi|27315576|gb|AAO04710.1|AE016747_207 carboxy-terminal processing protease [Staphylococcus epidermidis ATCC 12228] gi|291319375|gb|EFE59744.1| carboxy-terminal processing protease [Staphylococcus epidermidis M23864:W2(grey)] gi|329735325|gb|EGG71617.1| peptidase, S41 family [Staphylococcus epidermidis VCU045] Length = 491 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G P + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--PIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|312136042|ref|YP_004003380.1| carboxyl-terminal protease [Caldicellulosiruptor owensensis OL] gi|311776093|gb|ADQ05580.1| carboxyl-terminal protease [Caldicellulosiruptor owensensis OL] Length = 472 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + + ++RL G L D AV+ FQ + L PSG++ Sbjct: 380 ATKKFKKGDMDLEILAAQQRLFYLGYLSSWTA---KMDDNTVVAVQKFQKDNKLYPSGIL 436 Query: 158 DSSTLEAMNVPVDL 171 D +T + +N Sbjct: 437 DITTQKKLNEKFTD 450 >gi|327194359|gb|EGE61219.1| hypothetical protein RHECNPAF_12210033 [Rhizobium etli CNPAF512] Length = 224 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 56/195 (28%), Gaps = 19/195 (9%) Query: 206 EAVENGKVGLRSTVIVGRVDRQT---------PILHSRINRIMFNPYWVIPRSIIQKDMM 256 AV+NG + PI ++ Y ++ + + Sbjct: 36 TAVDNGVTYRSTNFAKIDKKWHRQVVKYFSSEPIGTVVVDTRHHFLYVIMENKTAIRYGV 95 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 + R+ ++ I + + P F N + + + Sbjct: 96 GVGREGFKWFGRATIDAKSLWPRWTPPP--EMRKRHPELPEFVDGGSPKNPLGPRAMYLH 153 Query: 317 SRN---NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 H T EP +SGC+R+ N +D L + P + + + Sbjct: 154 RDGVDTGYRFHGTLEPWSIGKD---ASSGCIRMFNEDAID--LYQRCPIGTAVQVLPHIA 208 Query: 374 TRKTTPVKLATEVPV 388 + + +++ PV Sbjct: 209 DQAESTTQVSQTTPV 223 >gi|296329447|ref|ZP_06871934.1| carboxy-terminal processing protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674771|ref|YP_003866443.1| carboxy-terminal processing protease [Bacillus subtilis subsp. spizizenii str. W23] gi|296153329|gb|EFG94191.1| carboxy-terminal processing protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413015|gb|ADM38134.1| carboxy-terminal processing protease [Bacillus subtilis subsp. spizizenii str. W23] Length = 466 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+S +V+ ++ L G ++ +D S VK FQ + L +G++ Sbjct: 376 ADKTYKSGDSGTNVKVAQKMLKALGY---KVKVNSTYDQDFVSVVKQFQKKEKLKETGVL 432 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMR 182 T + + ++ + + Sbjct: 433 TGDTTTKLMTELQKKLSNNDTQMEK 457 >gi|293611001|ref|ZP_06693300.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826653|gb|EFF85019.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 167 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GC+R+RN II+L + +D + Sbjct: 119 IYIHGTPDKEPMGVPM---SHGCIRMRNEEIIELFDLVAEDALVYLSEQ 164 >gi|15807153|ref|NP_295882.1| hypothetical protein DR_2159 [Deinococcus radiodurans R1] gi|6459963|gb|AAF11713.1|AE002049_18 hypothetical protein DR_2159 [Deinococcus radiodurans R1] Length = 255 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Query: 96 ELPI--RPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +P R L + V++L+ RL+ +DP KG F E+ V +FQ+ +G Sbjct: 160 AVPAFKRSLRLTTPRMNGADVKQLQLRLMDRSHVDPGKGGDGWFGPVTEANVIVFQLANG 219 Query: 151 LDPSGMVDSSTLEAMNVPVDL 171 L P+G+VD +T + P Sbjct: 220 LKPTGVVDRATWTTLFSPGAK 240 >gi|220925063|ref|YP_002500365.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219949670|gb|ACL60062.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 168 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 47/169 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V L V +R + VG++ +Q + I P W P + + Sbjct: 39 IVVRTGERRLYFVNGDGTAIRYPIAVGKLGKQ-WTGLAHIEGKYVQPAWAPPAEVKR--- 94 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIE 314 + P G N M + + Sbjct: 95 ------------------------------------DNPRLPRIIAGGSPHNPMGAAALT 118 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 +H T P F + GC+R+ ++++DL + TP Sbjct: 119 LDRGE-YAIHGTNRPSSIGT---FASYGCIRMYNQDVVDLYSRVEVGTP 163 >gi|154685680|ref|YP_001420841.1| XlyB [Bacillus amyloliquefaciens FZB42] gi|154351531|gb|ABS73610.1| XlyB [Bacillus amyloliquefaciens FZB42] Length = 317 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + +V++++ L + G + +AVK FQ Sbjct: 237 PLPSGVIKVTKPLTKGTNVKQVQNALSALYFYPDKGAKNHGADGVYGPKTANAVKRFQSV 296 Query: 149 HGLDPSGMVDSSTLEAMN 166 GL G+ T + Sbjct: 297 SGLTADGIYGPKTKAKIE 314 >gi|222529956|ref|YP_002573838.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor bescii DSM 6725] gi|222456803|gb|ACM61065.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor bescii DSM 6725] Length = 223 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V V ++ RL G + + +E A+ LFQ ++ L + + Sbjct: 154 RTIYPGDTGVDVMAVQRRLKELGIY--YGDIDGKYGPTLEYAINLFQKKNKLPVTNKITP 211 Query: 160 STLEAMN 166 L M Sbjct: 212 YLLRKMG 218 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 16/137 (11%) Query: 258 LLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + Y+ N I GK + ++ G+ + Sbjct: 39 SIDDSRLYVFKNGILYKSYPVSPGKPSTPTPIGTFKIVSKDYW-----GEG--FGGRWMG 91 Query: 315 FYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEV 371 +H T + GC+R+ +++ +L +++ T I Sbjct: 92 LNVPYGKYGIHGTIYESYIGA---HVSKGCIRMLNKDVKELFLYIPIGTTVVISEGIYGE 148 Query: 372 VKTRKTTPVKLATEVPV 388 + T T V V Sbjct: 149 FRNGFRTIYPGDTGVDV 165 Score = 36.9 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + + L+ I + + V+I + L +NG + V G+ TPI +I Sbjct: 16 ILMPLITISGISNHNKNPYLIYVSIDDSRLYVFKNGILYKSYPVSPGKPSTPTPIGTFKI 75 Query: 236 NRI 238 Sbjct: 76 VSK 78 >gi|302849927|ref|XP_002956492.1| hypothetical protein VOLCADRAFT_121539 [Volvox carteri f. nagariensis] gi|300258190|gb|EFJ42429.1| hypothetical protein VOLCADRAFT_121539 [Volvox carteri f. nagariensis] Length = 655 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 6/72 (8%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P L G V +L+ L G + F E+AVK FQ + L G Sbjct: 351 AVPESGLEAG----EVMQLQRYLHKYGWY--GGEVDGYFGPATEAAVKRFQEFYHLKVDG 404 Query: 156 MVDSSTLEAMNV 167 + +T M + Sbjct: 405 IAGPATRSLMMM 416 >gi|153815857|ref|ZP_01968525.1| hypothetical protein RUMTOR_02102 [Ruminococcus torques ATCC 27756] gi|145846882|gb|EDK23800.1| hypothetical protein RUMTOR_02102 [Ruminococcus torques ATCC 27756] Length = 101 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L +I+G + + +V+ FQ L + Sbjct: 17 PGYVLEIGSSGEKVRQIQEQLNVIAGAYPAIPKITADGIYGSKTAESVRKFQEVFQLPQT 76 Query: 155 GMVDSSTLEAMN 166 G VD ST ++ Sbjct: 77 GKVDYSTWYKIS 88 >gi|313623229|gb|EFR93479.1| carboxypeptidase family protein [Listeria innocua FSL J1-023] Length = 468 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 380 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDIDTEYAVQRFQAANNLDVTGIM 437 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 438 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 468 >gi|302553494|ref|ZP_07305836.1| predicted protein [Streptomyces viridochromogenes DSM 40736] gi|302471112|gb|EFL34205.1| predicted protein [Streptomyces viridochromogenes DSM 40736] Length = 253 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V ++ +L G +P + AV FQ HGL G+V T +A Sbjct: 56 GNAGPCVADVQSKLNQLG-ANPQLDVDGIAGRQTYQAVITFQRSHGLTADGVVGPLTKQA 114 Query: 165 MN 166 ++ Sbjct: 115 IS 116 >gi|298492145|ref|YP_003722322.1| cell wall hydrolase/autolysin ['Nostoc azollae' 0708] gi|298234063|gb|ADI65199.1| cell wall hydrolase/autolysin ['Nostoc azollae' 0708] Length = 313 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 10/72 (13%) Query: 96 ELPIRPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 ++ + L GN S ++ L+ R + E+A+K FQ ++GL Sbjct: 248 QILSKRLVQGNQTSGPIIRYLQYR--------VGADPDGIYGLNTEAAIKKFQQQNGLTA 299 Query: 154 SGMVDSSTLEAM 165 G+V + T + + Sbjct: 300 DGIVGAPTWQKL 311 Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 107 SSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + S+ RL++ L D + SAV+ FQ G+ PSGM +S+T Sbjct: 185 TDTSILRLQKALNQLNITDKNGKPLDEDNFTGPATTSAVEKFQKMAGIIPSGMANSTTWN 244 Query: 164 AMNVPVDLRIRQ 175 A+N + R+ Q Sbjct: 245 AINQILSKRLVQ 256 >gi|119511006|ref|ZP_01630127.1| Peptidoglycan-binding domain 1 protein [Nodularia spumigena CCY9414] gi|119464351|gb|EAW45267.1| Peptidoglycan-binding domain 1 protein [Nodularia spumigena CCY9414] Length = 292 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 13/93 (13%) Query: 78 TEKAIAF--YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 T AI YQ+ G + L LG+ +V ++ L + + + Sbjct: 211 TRNAIFRNGYQNGYQSGTGGPVI---LGLGSRGSAVTEIQRALGVE--------PTGYYG 259 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ FQ R+ L G+V T A+ Sbjct: 260 PTTTRVVREFQARNYLRVDGIVGPETRSAILRN 292 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ S +V ++ L + + + V+ FQ R+ L G+V T Sbjct: 160 LSLGSRSSAVTEVQRALGV--------QPTGYYGPTTTRVVRQFQARNNLRVDGIVGPET 211 Query: 162 LEAM 165 A+ Sbjct: 212 RNAI 215 >gi|90419110|ref|ZP_01227021.1| peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90337190|gb|EAS50895.1| peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 249 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 8/91 (8%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV- 167 V+ ++ L +G + ++A++ FQ RHGL G L + Sbjct: 80 PLVREVQTALAEAGIY--EAPVDGRPGPATDTAIRTFQSRHGLTTDGAATPLLLSQIRQV 137 Query: 168 -----PVDLRIRQLQVNLMRIKKLLEQKMGL 193 R + R++ + + Sbjct: 138 TAQAPNPSPRPNAIASIEERMRGIPQNVPDN 168 >gi|16801031|ref|NP_471299.1| hypothetical protein lin1965 [Listeria innocua Clip11262] gi|16414466|emb|CAC97195.1| lin1965 [Listeria innocua Clip11262] gi|313618251|gb|EFR90316.1| carboxy- processing protease [Listeria innocua FSL S4-378] Length = 496 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDIDTEYAVQRFQAANNLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|186682970|ref|YP_001866166.1| cell wall hydrolase/autolysin [Nostoc punctiforme PCC 73102] gi|186465422|gb|ACC81223.1| cell wall hydrolase/autolysin [Nostoc punctiforme PCC 73102] Length = 313 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 21/103 (20%) Query: 76 AQTEKAIAFYQDI--------LSRGGWPEL----PIRPLHLGNSSVSVQR-LRERLIISG 122 A T+ A+ +Q I W + R + ++ +V R L+ RL + Sbjct: 217 ANTKSAVEKFQAIIGVQTTGIADSTTWNAINLILAKRIIRPNHAGGAVVRYLQYRLGVEN 276 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 D + E VK FQ ++GLD G+V ++ + + Sbjct: 277 D--------GVYGPQTEVVVKNFQKQNGLDADGIVGPASWQKL 311 Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%) Query: 108 SVSVQRLRE---RLIISGDLDPSKGLSVAF-DAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 ++ RL++ RL I+ D + + + F A +SAV+ FQ G+ +G+ DS+T Sbjct: 186 DATILRLQKSLNRLKIT-DKNGNALVEDGFTGANTKSAVEKFQAIIGVQTTGIADSTTWN 244 Query: 164 AMNVPVDLRI 173 A+N+ + RI Sbjct: 245 AINLILAKRI 254 >gi|260565605|ref|ZP_05836089.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|265991216|ref|ZP_06103773.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|260151673|gb|EEW86767.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|263002000|gb|EEZ14575.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] Length = 255 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 71/211 (33%), Gaps = 18/211 (8%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 A V + ++ + N+ ++ K A + N + ++ Sbjct: 48 FVASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAART----NNTAKANKYSIDP 103 Query: 222 -GRVDRQTPILHSRINRIMFNPY---WVIPRSIIQKDM-MALLRQDPQYLKDNNIHMIDE 276 R T + ++ +++ S + +A+ +Q ++ I E Sbjct: 104 KFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKRE 163 Query: 277 KGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNN-TYMHDTPEPILF 332 + + E ++ + F D G N + S + +++ +H T +P Sbjct: 164 WPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTI 223 Query: 333 NNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + ++GC R+ +++DL + T Sbjct: 224 GSS---ASNGCFRMINEDVMDLYDRVTLGTE 251 >gi|118476424|ref|YP_893575.1| hypothetical protein BALH_0687 [Bacillus thuringiensis str. Al Hakam] gi|196046746|ref|ZP_03113969.1| conserved domain protein [Bacillus cereus 03BB108] gi|229183083|ref|ZP_04310313.1| hypothetical protein bcere0004_6600 [Bacillus cereus BGSC 6E1] gi|118415649|gb|ABK84068.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|196022458|gb|EDX61142.1| conserved domain protein [Bacillus cereus 03BB108] gi|228600222|gb|EEK57812.1| hypothetical protein bcere0004_6600 [Bacillus cereus BGSC 6E1] Length = 253 Score = 52.7 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIEFY 316 ++ Y + + + E + + ++ G N + + + Sbjct: 39 ENGNYA--KTFPVTTGRDRTPTPEGNFCIITKYKNKEYHRKKIAGGAPNNPLGTRWLGL- 95 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 96 DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|301052395|ref|YP_003790606.1| hypothetical protein BACI_c07830 [Bacillus anthracis CI] gi|300374564|gb|ADK03468.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 253 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIEFY 316 ++ Y + + + E + + ++ G N + + + Sbjct: 39 ENGNYA--KTFPVTTGRDRTPTPEGNFCIITKYKNKEYHRKKIAGGAPNNPLGTRWLGL- 95 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 96 DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|225862730|ref|YP_002748108.1| hypothetical protein BCA_0817 [Bacillus cereus 03BB102] gi|225786367|gb|ACO26584.1| conserved domain protein [Bacillus cereus 03BB102] Length = 253 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIEFY 316 ++ Y + + + E + + ++ G N + + + Sbjct: 39 ENGNYA--KTFPVTTGRDRTPTPEGNFCIITKYKNKEYHRKKIAGGAPNNPLGTRWLGL- 95 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 96 DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|254500753|ref|ZP_05112904.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] gi|222436824|gb|EEE43503.1| ErfK/YbiS/YcfS/YnhG family [Labrenzia alexandrii DFL-11] Length = 220 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 8/142 (5%) Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 P+ ++ Y V P + + + R + + I E K + Sbjct: 77 PTSHPVGTIVVDPNNKFLYLVQPGGRAIRYGIGVGRAGFAWNGEAVIRFKREWPKWFPPD 136 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETS 341 E+ P+ + Q+ G N + + + + +++ Y +H T +P +S Sbjct: 137 EMIERDPDLERYRDGQEGGPRNPIGARGLYLWQGNKDTLYRIHSTNQPRSIGTN---ASS 193 Query: 342 GCVRV--RNIIDLDVWLLKDTP 361 GC+R+ ++IIDL + T Sbjct: 194 GCIRMWHQDIIDLYDRVELGTK 215 >gi|319780158|ref|YP_004139634.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166046|gb|ADV09584.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 255 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 45/171 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V++ L V+ G +R V +G+ D + I P W P +I + Sbjct: 121 IVVHLKERMLYFVQPGGDAIRYGVGIGK-DGFRWSGRANIQYGREWPTWTPPPEMIARK- 178 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 E V W + Q G N + + + Sbjct: 179 ---------------------------PELVKWQAG--------QPGGLTNPLGARALYI 203 Query: 316 YSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 Y +H +PE + +SGCVR+ ++IIDL + K P Sbjct: 204 YQDGKDTGYRIHGSPEWWSIGQAM---SSGCVRLINQDIIDLYSRVSKKNP 251 >gi|218675455|ref|ZP_03525124.1| hypothetical protein RetlG_30846 [Rhizobium etli GR56] Length = 86 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 6/71 (8%) Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 + P G N + + I +H T +P +SGC R+ ++ Sbjct: 14 KNPRLPAVVKAGPANPLGTRAIYLADG-LLRIHGTNDPSSIGTN---ASSGCFRMYREDV 69 Query: 350 IDLDVWLLKDT 360 +L + T Sbjct: 70 EELYEMVQPGT 80 >gi|188993173|ref|YP_001905183.1| hypothetical protein xccb100_3778 [Xanthomonas campestris pv. campestris str. B100] gi|167734933|emb|CAP53145.1| Conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 632 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L V +L++ L G D A+ AVK FQ HGL Sbjct: 429 TSGLLREKAHGAEVLKLQQTLQQLGYKDAKGNELNADGAYGQRTGEAVKAFQRAHGLQED 488 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V TL+A+ + + N Sbjct: 489 GVVGGDTLKALKQAEKTPLLSEKTN 513 >gi|91978840|ref|YP_571499.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91685296|gb|ABE41598.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 197 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 51/193 (26%), Gaps = 48/193 (24%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L + ++V L V+ LR + VGR Q +I R Sbjct: 49 LRKQMVFFRSNEPPGTIVVQTSERYLYLVQGNNRALRYGIGVGREGFQ-WQGLLKIARKA 107 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P WV P +IQ+ P Sbjct: 108 EWPDWVPPPEMIQRQ---------------------------------------PYLPRF 128 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 G N + + + S Y +H T P +SGC R+ N DL + Sbjct: 129 MAGGPGNPLGARAMYLGS--TVYRIHGTNRPDTIGT---AISSGCFRLVNADVADLYDRV 183 Query: 357 LKDTPTWSRYHIE 369 T R E Sbjct: 184 PVGTKVVVRQRPE 196 >gi|210615974|ref|ZP_03290874.1| hypothetical protein CLONEX_03093 [Clostridium nexile DSM 1787] gi|210149979|gb|EEA80988.1| hypothetical protein CLONEX_03093 [Clostridium nexile DSM 1787] Length = 421 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++++E+L +I+G P + + ++V+ FQ GL + Sbjct: 337 PGYTLSNGSSGDKVRQMQEQLNVIAGAYPAIPKVAVDGIYGPATAASVRKFQSVFGLPET 396 Query: 155 GMVDSSTLEAMN 166 G VD T ++ Sbjct: 397 GTVDYRTWYKIS 408 >gi|182438957|ref|YP_001826676.1| putative peptidodoglycan-binding membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467473|dbj|BAG21993.1| putative peptidodoglycan-binding membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 431 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLDPS--GM 156 L G+ V L+ RL G+ S + ++ V +V ++Q + G+ Sbjct: 350 SSLRPGDRGPEVAELQTRLRTVGEWLYSGPVDGSSYSDQVAHSVAIYQSYKAIQGDPIGV 409 Query: 157 VDSSTLEAMNV 167 +T A+ Sbjct: 410 YGPNTRRALEQ 420 >gi|254974151|ref|ZP_05270623.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-66c26] gi|255091552|ref|ZP_05321030.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile CIP 107932] gi|255313279|ref|ZP_05354862.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-76w55] gi|255515969|ref|ZP_05383645.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-97b34] gi|255649060|ref|ZP_05395962.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-37x79] gi|260682251|ref|YP_003213536.1| putative spore peptidoglycan hydrolase [Clostridium difficile CD196] gi|260685850|ref|YP_003216983.1| putative spore peptidoglycan hydrolase [Clostridium difficile R20291] gi|306519173|ref|ZP_07405520.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-32g58] gi|260208414|emb|CBA60957.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile CD196] gi|260211866|emb|CBE02295.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile R20291] Length = 423 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGL--SVAFDAYVESAV 142 + + G P L +G+S V+ ++ +L IS + + A E+AV Sbjct: 324 RAPIVSGVPVSFPGTTLQVGSSGQYVRTIQNQLNAISNSYPAVPKVIEDGIYGADTENAV 383 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 K+FQ GL SG+VD T ++ Sbjct: 384 KIFQGIFGLPQSGVVDFKTWYEISR 408 >gi|15614194|ref|NP_242497.1| spore cortex-lytic enzyme [Bacillus halodurans C-125] gi|25453281|sp|Q9KCE0|SLEB_BACHD RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; Flags: Precursor gi|10174248|dbj|BAB05350.1| spore cortex-lytic enzyme [Bacillus halodurans C-125] Length = 330 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + V L+ RL G +K + F AV+ +Q G++ G+V Sbjct: 38 GATGDDVVELQARLQYIGFY--NKKIDGVFGWSTYWAVRNYQYEFGMEVDGLVGPEMKAK 95 Query: 165 MNVPVDLRIRQLQVNLMRIKKLL 187 + + + L + +K Sbjct: 96 LEKTTNFNRDFVDRALTQGRKFT 118 >gi|163791469|ref|ZP_02185877.1| endolysin [Carnobacterium sp. AT7] gi|159873282|gb|EDP67378.1| endolysin [Carnobacterium sp. AT7] Length = 367 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 8/93 (8%) Query: 76 AQTEKAIAFYQDI----LSRGGWPELPI---RPLHLGNSSVSVQRLRERLIISGDLDPSK 128 + T++ + G W R L G++ V ++ L+ + Sbjct: 270 SLTKQGLIKLIQKTVGSAIDGYWGPKTAANMRTLKSGSTGWDVYAIQAFLLGNNF-QIVG 328 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 F AVK FQ+ GL G+V T Sbjct: 329 MPDNTFGPNTVRAVKEFQIVSGLQSDGIVGPKT 361 >gi|1351737|sp|P49320|YBP1_STRAU RecName: Full=Uncharacterized protein in bpoA1 3'region; AltName: Full=ORF1 gi|522151|gb|AAC43254.1| hypothetical 118 amino acid truncated protein encoded by ORF1 [Streptomyces aureofaciens] Length = 118 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%) Query: 106 NSSVSVQRLR----ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +S +V+ L+ L G + F +AV+ FQ GL P G+V T Sbjct: 47 DSGDAVKALQCELYNSLAYMG-----PDVDGYFGPKTLAAVQKFQTCTGLKPDGIVGPLT 101 Query: 162 LEAMN 166 ++ Sbjct: 102 WAKLD 106 >gi|18496915|ref|NP_569765.1| hypothetical protein TM4_gp30 [Mycobacterium phage TM4] gi|4336066|gb|AAD17597.1| gp30 [Mycobacterium phage TM4] Length = 400 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 103 HLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 LG V+ ++++LI D P S +D ++A+ FQ R GL +G+ D Sbjct: 7 QLGMQGEQVKVIQQKLIAKYQWVRDRYPRLTASGVYDVNTQAAIVEFQFRAGLPVTGIAD 66 Query: 159 SST---LEAMNVPVDLRIRQLQVNL 180 +T L A+ R R + + Sbjct: 67 YATQVRLGAVAPAPPPRQRIMVLTF 91 >gi|84494649|ref|ZP_00993768.1| putative lipoprotein [Janibacter sp. HTCC2649] gi|84384142|gb|EAQ00022.1| putative lipoprotein [Janibacter sp. HTCC2649] Length = 236 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 57/246 (23%), Gaps = 72/246 (29%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG+ +V + RL G F + AV Q G SG D S Sbjct: 40 VLVLGSKGSAVTTAQTRLNALGYWC--GTPDGTFGHVTQQAVWALQKSAGARRSGRFDLS 97 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T + V R + + V++ L + NGK+ Sbjct: 98 TWGLLERGVKPR---------------PKTTSGTAIEVDLAKQILMVIGNGKLVYTLNTS 142 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 G +R + P + + Sbjct: 143 TGSGERYYSGGAW------------------------KTARTPS----GSYSIYYRW--- 171 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W ++ + Y + + +H + + Sbjct: 172 ----PNGWQ---------------NGSLGAMWRPTYWKGDFAIHGSQS-----IPPYPAS 207 Query: 341 SGCVRV 346 GC RV Sbjct: 208 HGCCRV 213 >gi|242373732|ref|ZP_04819306.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis M23864:W1] gi|242348552|gb|EES40154.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis M23864:W1] Length = 526 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LG+ + +V+ ++ L G S FD+ +ESA+K FQ + LD +G D Sbjct: 440 KTYQLGDDNKNVKTMKIGLTALGY--KVDNESNKFDSDLESAIKSFQRDNHLDVTGQFDK 497 Query: 160 ST 161 T Sbjct: 498 KT 499 >gi|39933289|ref|NP_945565.1| ErfK/YbiS/YcfS/YnhG protein [Rhodopseudomonas palustris CGA009] gi|192288641|ref|YP_001989246.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] gi|39652914|emb|CAE25656.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] gi|192282390|gb|ACE98770.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 175 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 41/163 (25%), Gaps = 45/163 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++V L V +R V VG+ +Q ++I+ NP W Sbjct: 37 FRGDYSPGTIVVRTGERRLYLVVEPGHAVRYPVGVGKAGKQ-WAGVTKIDGKFRNPAWAP 95 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KI 305 P + + + P G Sbjct: 96 PAEVKR---------------------------------------DVPTIPDVIPGGSPA 116 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N M + +H T P F + GC+R+ N Sbjct: 117 NPMGVAAMTLAGGE-YAIHGTNRPQSIG---GFVSYGCIRMLN 155 >gi|229195071|ref|ZP_04321846.1| hypothetical protein bcere0001_6460 [Bacillus cereus m1293] gi|228588300|gb|EEK46343.1| hypothetical protein bcere0001_6460 [Bacillus cereus m1293] Length = 219 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + + +H T + ++GC+R+ Sbjct: 33 TKYKNKEYHRKKIAGGAPNNPLGTRWLGL-DKYEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|288919997|ref|ZP_06414318.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] gi|288348650|gb|EFC82906.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] Length = 170 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 16/77 (20%) Query: 300 QDPGKINAMASTKIEFY------SRNN-----TYMHDTPEPILFNNVVRFETSGCVRVRN 348 + A +H T +P R + GC+R+ N Sbjct: 94 RPSNPNGAYGPYAFGLSGFSTSLDDFGGRDPVIGIHGTNDPSSLG---RDVSHGCIRLSN 150 Query: 349 --IIDLDVWLLKDTPTW 363 I L + TP Sbjct: 151 DSITRLAQTVPLGTPVE 167 >gi|166153471|ref|YP_001653985.1| peptidoglycan binding protein [Bacillus thuringiensis] gi|165875310|gb|ABY68467.1| putative peptidoglycan binding protein [Bacillus thuringiensis] Length = 178 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V +L+ L G + F ++ +V +Q H L +G+V Sbjct: 103 TLRKGSTGYWVVKLQGFLQKIGYYS--GRIDGQFGHILDGSVSNYQRDHRLIINGIVGPK 160 Query: 161 TLEAMNVP 168 T + Sbjct: 161 TWCQLERD 168 >gi|170751396|ref|YP_001757656.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170657918|gb|ACB26973.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 226 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 7/93 (7%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY- 322 + KG P+ + G N + + + +R+ + Sbjct: 118 FSWKGEARVGRKGVWPDWSPTVTMVSLHPDLPRTRKGGLDNPLGARALYLYQGNRDILFR 177 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +H T EP + +SGCVR+ N D+ Sbjct: 178 IHGTNEPWSIGEQM---SSGCVRMLN-EDIADL 206 >gi|206977215|ref|ZP_03238113.1| conserved domain protein [Bacillus cereus H3081.97] gi|206744531|gb|EDZ55940.1| conserved domain protein [Bacillus cereus H3081.97] Length = 253 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIE 314 + ++ N + + + E + + ++ G N + + + Sbjct: 35 LSFFENGNYTKTFPVTTGRDRTPTPEGNFCIITKYKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|167635957|ref|ZP_02394264.1| conserved domain protein [Bacillus anthracis str. A0442] gi|170689143|ref|ZP_02880341.1| conserved domain protein [Bacillus anthracis str. A0465] gi|254683051|ref|ZP_05146912.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus anthracis str. CNEVA-9066] gi|254725838|ref|ZP_05187620.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus anthracis str. A1055] gi|254739887|ref|ZP_05197579.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus anthracis str. Kruger B] gi|167528629|gb|EDR91389.1| conserved domain protein [Bacillus anthracis str. A0442] gi|170666891|gb|EDT17656.1| conserved domain protein [Bacillus anthracis str. A0465] Length = 253 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEE----VDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + ++ N + + + E ++ + + N + + + Sbjct: 35 LSFFENGNYTKTFPVTTGRDRTPTPEGNFCIINKYKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|163761549|ref|ZP_02168621.1| hypothetical protein HPDFL43_21397 [Hoeflea phototrophica DFL-43] gi|162281263|gb|EDQ31562.1| hypothetical protein HPDFL43_21397 [Hoeflea phototrophica DFL-43] Length = 260 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 42/170 (24%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +V+ L V + LR V +GR D + + P W P S+I++ Sbjct: 124 VVDTADRFLYLVREDGLALRYGVGIGR-DGFAWSGRAIVQWKQEWPKWTPPASMIERQ-- 180 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 E W++ PG N + + + + Sbjct: 181 --------------------------PELERWSAANGGM-----PPGLDNPLGARALYIF 209 Query: 317 SR--NNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + Y +H +PE +SGCVR+ +++ DL + TP Sbjct: 210 QDGVDTLYRVHGSPEYKSIGK---AVSSGCVRLINQDVCDLYDRVPTRTP 256 >gi|316935958|ref|YP_004110940.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315603672|gb|ADU46207.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 228 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 296 FIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +++ + +H T +P +SGC+R+ N Sbjct: 132 LPASVPGGIDNPLGARALYLYQGNKDTLFRIHGTNQPEYIGAS---ISSGCIRMTN 184 >gi|13471521|ref|NP_103087.1| hypothetical protein mll1519 [Mesorhizobium loti MAFF303099] gi|14022263|dbj|BAB48873.1| mll1519 [Mesorhizobium loti MAFF303099] Length = 263 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 48/199 (24%) Query: 158 DSSTLEAMNVP-----VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 D++T+ A + + +L +R ++V++ L V +G Sbjct: 54 DTATMYAARTDEGYQLPAIPVAKLDPKFVRQIVADPTGEKPGTIVVDVSEHFLYLVRDGG 113 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 +R V +G+ + + P W P +IQ+ L + Sbjct: 114 KAIRYGVSLGKAG-FGWTGSAVVQARKKWPVWTPPPEMIQRR--PELAK----------- 159 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEP 329 F PG + + + + ++ Y +H TPE Sbjct: 160 -----------------------FKDGMPPGPQSPLGARALYLFRDGKDTMYRLHGTPEW 196 Query: 330 ILFNNVVRFETSGCVRVRN 348 +SGCVR N Sbjct: 197 DSIGKN---ASSGCVRFMN 212 >gi|332671430|ref|YP_004454438.1| peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] gi|332340468|gb|AEE47051.1| Peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] Length = 353 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 3/78 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM-VD 158 R L G+ V RL+ L G D F + + AV F G + D Sbjct: 122 RVLRPGDQGEDVARLQRFLTGLGLYDGRA--DGRFGSALGRAVARFNADAGRGSTKTDFD 179 Query: 159 SSTLEAMNVPVDLRIRQL 176 T+ + L Sbjct: 180 PGTVVWVGPDPLEVAEPL 197 >gi|255521659|ref|ZP_05388896.1| carboxy-terminal processing proteinase [Listeria monocytogenes FSL J1-175] Length = 323 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 235 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQAANKLDVTGIM 292 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 293 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 323 >gi|222094508|ref|YP_002528568.1| protein erfk/srfk precursor [Bacillus cereus Q1] gi|221238566|gb|ACM11276.1| protein erfK/srfK precursor [Bacillus cereus Q1] Length = 253 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIE 314 + ++ N + + + E + + ++ G N + + + Sbjct: 35 LSFFENGNYTKTFPVTTGRDRTPTPEGNFCIITKYKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|254852755|ref|ZP_05242103.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300763836|ref|ZP_07073833.1| carboxyl-terminal protease [Listeria monocytogenes FSL N1-017] gi|258606083|gb|EEW18691.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300515572|gb|EFK42622.1| carboxyl-terminal protease [Listeria monocytogenes FSL N1-017] Length = 496 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQAANKLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|226224454|ref|YP_002758561.1| carboxy-terminal processing proteinase [Listeria monocytogenes Clip81459] gi|254826107|ref|ZP_05231108.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254931979|ref|ZP_05265338.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254992637|ref|ZP_05274827.1| carboxy-terminal processing proteinase [Listeria monocytogenes FSL J2-064] gi|225876916|emb|CAS05625.1| Putative carboxy-terminal processing proteinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583530|gb|EFF95562.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293595347|gb|EFG03108.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|328466201|gb|EGF37358.1| carboxy-terminal processing proteinase [Listeria monocytogenes 1816] gi|328473572|gb|EGF44409.1| carboxy-terminal processing proteinase [Listeria monocytogenes 220] gi|332312292|gb|EGJ25387.1| Carboxy-terminal processing protease [Listeria monocytogenes str. Scott A] Length = 496 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQAANKLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|46908083|ref|YP_014472.1| carboxypeptidase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093234|ref|ZP_00231006.1| carboxypeptidase family protein [Listeria monocytogenes str. 4b H7858] gi|46881353|gb|AAT04649.1| carboxypeptidase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018366|gb|EAL09127.1| carboxypeptidase family protein [Listeria monocytogenes str. 4b H7858] Length = 468 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 380 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQAANKLDVTGIM 437 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 438 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 468 >gi|206978223|ref|ZP_03239103.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|206743582|gb|EDZ55009.1| conserved hypothetical protein [Bacillus cereus H3081.97] Length = 153 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 39/169 (23%), Gaps = 59/169 (34%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKTATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 +H T T GC+R+ N WL + P Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFERIP 145 >gi|52144568|ref|YP_082261.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus E33L] gi|51978037|gb|AAU19587.1| conserved hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus E33L] Length = 253 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIE 314 + ++ N + + + E + + ++ G N + + + Sbjct: 35 LSFFENGNYTKTFPVTTGRDRTPTPEGNFCIITKYKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|228988284|ref|ZP_04148379.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771456|gb|EEM19927.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 153 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 38/167 (22%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFER 143 >gi|154246422|ref|YP_001417380.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160507|gb|ABS67723.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 497 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 11/82 (13%) Query: 95 PELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-- 150 P P + L G+ VSV RL++RL G + FD + AV+LFQ R Sbjct: 233 PRFPGKYLMEKTGDK-VSVTRLQKRLADMG--ASPGAPTGVFDTPTKYAVQLFQARSVDL 289 Query: 151 ----LDPSGMVDSSTLEAMNVP 168 L+ G+V T A+ P Sbjct: 290 DGAPLEIDGIVGPMTWGALFGP 311 >gi|194289051|ref|YP_002004958.1| lytic protein [Cupriavidus taiwanensis LMG 19424] gi|193222886|emb|CAQ68891.1| putative lytic enzyme, similar to phage phiCTX_orf11 [Cupriavidus taiwanensis LMG 19424] Length = 268 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V+ L+ L G ++ FDA +AV+ Q R+GL G+ T Sbjct: 4 LRLGDVGADVRELQRLLRERG---AQLEMTGDFDAATLAAVRAAQARYGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 L A+ +L R Sbjct: 61 LLALQRDTRQPAHLSAADLQR 81 >gi|217958339|ref|YP_002336887.1| hypothetical protein BCAH187_A0913 [Bacillus cereus AH187] gi|217066573|gb|ACJ80823.1| conserved domain protein [Bacillus cereus AH187] Length = 253 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 67 TKYKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|116249821|ref|YP_765659.1| hypothetical protein RL0055 [Rhizobium leguminosarum bv. viciae 3841] gi|9392598|gb|AAF87210.1|AF228577_4 unknown [Rhizobium leguminosarum bv. viciae] gi|115254469|emb|CAK05543.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 227 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 55/224 (24%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 V++A ++F +GL A + I +++ R + Sbjct: 36 GPTVQTA-QIFNDAYGLTKD---------AGYSLPAIPIDRVKPQFRRQVVSYQTTERPG 85 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN L + +R + VG+ + + P W P+ + + Sbjct: 86 TIIVNTRERFLYYILANGKAMRYGIGVGKQGFA-WAGTAYVAWKQEWPNWHPPKEMAVRR 144 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 L + ++ D G PG N + + + Sbjct: 145 --PDLAK----------YVEDGMG-----------------------PGLSNPLGARAMY 169 Query: 315 FYSRNN----TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 ++ + +H TPE +SGC+R+ +++IDL Sbjct: 170 LFNEDGKDTLFRLHGTPEWASIGT---AASSGCIRLMNQDVIDL 210 >gi|90580763|ref|ZP_01236566.1| putative general secretion pathway protein A [Vibrio angustum S14] gi|90438031|gb|EAS63219.1| putative general secretion pathway protein A [Vibrio angustum S14] Length = 523 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G + V L ++L L FD + ++ FQ L G+ Sbjct: 445 SIRFGQNGPRVAWLDQQLND--FLGEESPRKGYFDQSILDKLRRFQRSQDLAADGIAGPM 502 Query: 161 TL 162 TL Sbjct: 503 TL 504 >gi|89075907|ref|ZP_01162282.1| putative general secretion pathway protein A [Photobacterium sp. SKA34] gi|89048348|gb|EAR53926.1| putative general secretion pathway protein A [Photobacterium sp. SKA34] Length = 523 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G + V L ++L L FD + ++ FQ L G+ Sbjct: 445 SIRFGQNGPRVAWLDQQLND--FLGEESPRKGYFDQSILDKLRRFQRSQDLAADGIAGPM 502 Query: 161 TL 162 TL Sbjct: 503 TL 504 >gi|298293414|ref|YP_003695353.1| peptidoglycan-binding protein [Starkeya novella DSM 506] gi|296929925|gb|ADH90734.1| Peptidoglycan-binding domain 1 protein [Starkeya novella DSM 506] Length = 263 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 9/99 (9%) Query: 95 PELPIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH---- 149 P L G V RL+ RL L + F E AV+LFQ R+ Sbjct: 9 PIYAGVVLENGMLGSPEVARLQARLNDV--LGSALIEDGDFGVATEDAVRLFQARYTDPT 66 Query: 150 --GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 ++ G V T A+ L + R + L Sbjct: 67 GGEIEVDGRVGPETWAALFGAESLGAAKPAAGDTRGRVL 105 >gi|229158636|ref|ZP_04286694.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus ATCC 4342] gi|228624620|gb|EEK81389.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus ATCC 4342] Length = 153 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 38/167 (22%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NGK TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFER 143 >gi|21283039|ref|NP_646127.1| carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus MW2] gi|49486261|ref|YP_043482.1| putative protease [Staphylococcus aureus subsp. aureus MSSA476] gi|297207922|ref|ZP_06924355.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912006|ref|ZP_07129449.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus TCH70] gi|81696321|sp|Q6G9E1|CTPAL_STAAS RecName: Full=Probable CtpA-like serine protease gi|81762507|sp|Q8NWR2|CTPAL_STAAW RecName: Full=Probable CtpA-like serine protease gi|21204478|dbj|BAB95175.1| probable carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus MW2] gi|49244704|emb|CAG43139.1| putative protease [Staphylococcus aureus subsp. aureus MSSA476] gi|296887496|gb|EFH26396.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886252|gb|EFK81454.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus TCH70] gi|329733430|gb|EGG69762.1| peptidase, S41 family [Staphylococcus aureus subsp. aureus 21193] Length = 496 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G ++ FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGYKVDNET--TQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|85707458|ref|ZP_01038538.1| hypothetical protein ROS217_02920 [Roseovarius sp. 217] gi|163748158|ref|ZP_02155464.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] gi|85668046|gb|EAQ22927.1| hypothetical protein ROS217_02920 [Roseovarius sp. 217] gi|161378563|gb|EDQ03026.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] Length = 213 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 42/166 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + + + V+ A L +E G +R V + R D P I R + P+ Sbjct: 56 RVAAKDGLTPGDIHVDAVARYLYHIEEGGTAMRYGVAIARGDLYEP-GTYTIKRKVRWPH 114 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +++I +DP+ D + D +PG Sbjct: 115 WQPTQNMI--------DRDPELYAD----IADG-----------------------MEPG 139 Query: 304 KINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV 346 NA+ S + F +TY +H TP+P R +SGCVR+ Sbjct: 140 PKNALGSRALYLFLGDRDTYLRIHGTPQPRSIG--GRA-SSGCVRM 182 >gi|37520189|ref|NP_923566.1| hypothetical protein gll0620 [Gloeobacter violaceus PCC 7421] gi|35211182|dbj|BAC88561.1| gll0620 [Gloeobacter violaceus PCC 7421] Length = 424 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 9/103 (8%) Query: 86 QDILSRGGWPELPIRPLHLGN---SSVSVQRLRERLIISGD-----LDPSKGLSVAFDAY 137 + ++ GW EL G + +V+ L+ +L+ G + F Sbjct: 21 RAERAQTGWDELRDAEETQGTFVRNREAVRSLQRQLVFLGYTTGAGPSSGATIDGRFGPG 80 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 E AV FQ HGL G D T +++ V R QL Sbjct: 81 TERAVHTFQREHGLAV-GNFDRKTAQSLVQAVAERATQLPATT 122 >gi|295702691|ref|YP_003595766.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium DSM 319] gi|294800350|gb|ADF37416.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus megaterium DSM 319] Length = 196 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 9/60 (15%) Query: 304 KINAMASTKIEFYSRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 N + + +R +H P + +SGC+R+ + + WL Sbjct: 30 PRNPLGDRWLGLNARGTYGTTYAIHGNNNPSSIGT---YASSGCIRMYD--EEVRWLFDR 84 >gi|160937909|ref|ZP_02085267.1| hypothetical protein CLOBOL_02803 [Clostridium bolteae ATCC BAA-613] gi|158439135|gb|EDP16889.1| hypothetical protein CLOBOL_02803 [Clostridium bolteae ATCC BAA-613] Length = 416 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L I + P + + +AV+ FQ GL + Sbjct: 332 PGSDLTIGSSGDKVRQMQEQLDEIATVYSAIPRVTPDGIYGSGTANAVREFQSIFGLPQT 391 Query: 155 GMVDSSTL 162 G+VD +T Sbjct: 392 GVVDFATW 399 >gi|85713880|ref|ZP_01044869.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] gi|85699006|gb|EAQ36874.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] Length = 187 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + +++ L V LR + VGR D RI+ Sbjct: 45 RQLVYFPSRYAPGTIVIRTGERRLYLVLPQGQALRYGIGVGR-DGFRWSGVHRISAKKEW 103 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 104 PSWTPPSQMLRRR---------------------------------------PDLPRFMK 124 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP R +SGC R+ N Sbjct: 125 GGLENPLGARAMYLG-STLYRIHGSNEPETIG---RAVSSGCFRMTN 167 >gi|320101740|ref|YP_004177331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera pallida ATCC 43644] gi|319749022|gb|ADV60782.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera pallida ATCC 43644] Length = 702 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 7/117 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL G + V+RL+ L + P + F + AV FQ L +G+V Sbjct: 320 DSPLAFGATGPRVERLQRLLNRRLEPSPGLVVDGDFGPATQEAVIRFQKERHLGDNGVVT 379 Query: 159 SSTLEAMNV-------PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 A+ Q+N E +P + A Sbjct: 380 PEVWRALGELPPDPAGDPQAEADPAQLNAEFATLRPEPAEPAANDPTAVPFVTARAW 436 >gi|302545808|ref|ZP_07298150.1| putative peptidoglycan-binding membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302463426|gb|EFL26519.1| putative peptidoglycan-binding membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 497 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 98 PIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS- 154 P P L G+S V L++RL L +D V+ AV +Q R+ + Sbjct: 421 PTGPPVLREGDSGAEVTELQKRLTQL--LIYIGVADGEYDDGVKDAVAAYQDRYDITGDP 478 Query: 155 -GMVDSSTL 162 G+ +T Sbjct: 479 EGVYGENTR 487 >gi|124022435|ref|YP_001016742.1| hypothetical protein P9303_07261 [Prochlorococcus marinus str. MIT 9303] gi|123962721|gb|ABM77477.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9303] Length = 243 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 51/158 (32%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + + +G+ V +G TP ++ + NP + +S Sbjct: 123 REISVIRDGEKLGPWPVAIGDPRTPTPTGVFKVENKVTNPQYQSTKS------------- 169 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNN 320 V G + + I F +N Sbjct: 170 ----------------GRVNPAI-----------------GVASPLGDRWIGFLQSGQNQ 196 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 +H TP P N T+GCVR+ ++ L + Sbjct: 197 FGIHGTPWPYWVN-ARAAVTNGCVRMLHAHVRQLFDVV 233 >gi|260771263|ref|ZP_05880190.1| general secretion pathway protein A [Vibrio furnissii CIP 102972] gi|260613860|gb|EEX39052.1| general secretion pathway protein A [Vibrio furnissii CIP 102972] Length = 530 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 2/88 (2%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + I R W + L G ++ L +L L + +D V Sbjct: 431 REWIEPLWQGEYRVVWQPSFYQTLRSGMRGEAITLLDAKLSRL--LGEPERHVTEYDQEV 488 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + V++FQ + G+ TL ++ Sbjct: 489 KRKVEIFQRWQHMQVDGIAGRQTLRQLD 516 >gi|255018611|ref|ZP_05290737.1| hypothetical protein LmonF_14491 [Listeria monocytogenes FSL F2-515] Length = 237 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 149 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQTANKLDVTGIM 206 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 207 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 237 >gi|224500081|ref|ZP_03668430.1| hypothetical protein LmonF1_10539 [Listeria monocytogenes Finland 1988] Length = 496 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQTANKLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|16803891|ref|NP_465376.1| hypothetical protein lmo1851 [Listeria monocytogenes EGD-e] gi|224501349|ref|ZP_03669656.1| hypothetical protein LmonFR_02300 [Listeria monocytogenes FSL R2-561] gi|254829153|ref|ZP_05233840.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254831548|ref|ZP_05236203.1| hypothetical protein Lmon1_09343 [Listeria monocytogenes 10403S] gi|254899452|ref|ZP_05259376.1| hypothetical protein LmonJ_06549 [Listeria monocytogenes J0161] gi|254912409|ref|ZP_05262421.1| carboxyl-terminal protease [Listeria monocytogenes J2818] gi|254936736|ref|ZP_05268433.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|255025442|ref|ZP_05297428.1| hypothetical protein LmonocytFSL_02284 [Listeria monocytogenes FSL J2-003] gi|16411305|emb|CAC99929.1| lmo1851 [Listeria monocytogenes EGD-e] gi|258601563|gb|EEW14888.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609333|gb|EEW21941.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293590391|gb|EFF98725.1| carboxyl-terminal protease [Listeria monocytogenes J2818] Length = 496 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQTANKLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|310644287|ref|YP_003949046.1| carboxyl-terminal protease [Paenibacillus polymyxa SC2] gi|309249238|gb|ADO58805.1| Carboxyl-terminal protease [Paenibacillus polymyxa SC2] Length = 488 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 8/96 (8%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +S V+ + L G FD ES+V FQ L + Sbjct: 386 PLNKEKSLKYNMNSSDVKNAQIILQGLGY--KPGREDGYFDKVTESSVMAFQKEAKLTAN 443 Query: 155 GMVDSSTLEAMNVPVDLRIR------QLQVNLMRIK 184 G++D+ T AM + +IR QL+ + I+ Sbjct: 444 GIIDAKTAAAMEAKLIEKIRDPKNDNQLKQGIEEIR 479 >gi|293189417|ref|ZP_06608137.1| putative surface protein PspA [Actinomyces odontolyticus F0309] gi|292821507|gb|EFF80446.1| putative surface protein PspA [Actinomyces odontolyticus F0309] Length = 513 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G + V+ R RL + S L+ DA +AVK FQ R GL +G+V Sbjct: 289 ATNTLTWGMNGTKVRIARVRLGLW----HSNKLASV-DAPFVAAVKNFQQRAGLPVTGVV 343 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIK 184 D +T +AM+ + Q Q + + Sbjct: 344 DKATWDAMDTGYPWTVDQYQATPLPLT 370 >gi|226324793|ref|ZP_03800311.1| hypothetical protein COPCOM_02579 [Coprococcus comes ATCC 27758] gi|225207241|gb|EEG89595.1| hypothetical protein COPCOM_02579 [Coprococcus comes ATCC 27758] Length = 128 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++++E+L +I+G + + S+V+ FQ GL + Sbjct: 44 PGYTLSQGSSGTKVRQMQEQLNVIAGAYPAIPKITVDGIYGPATASSVRKFQSVFGLPVT 103 Query: 155 GMVDSSTL 162 G VD T Sbjct: 104 GTVDYRTW 111 >gi|218679908|ref|ZP_03527805.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium etli CIAT 894] Length = 120 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + Y +H T +P +SGC+R+ N Sbjct: 52 PGGPNNPLGARAMYLYRGGGDTHFRIHGTNQPQSIG---LAMSSGCIRMMN 99 >gi|23008969|ref|ZP_00050195.1| COG3409: Putative peptidoglycan-binding domain-containing protein [Magnetospirillum magnetotacticum MS-1] Length = 151 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 7/84 (8%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN--VPV 169 L++RL G F + AV Q GL G+V +T A++ V Sbjct: 2 VALQQRLADLGYF--IGAPDGDFGGGTQQAVWALQKAAGLSRDGVVGPATQAALDEGVTP 59 Query: 170 DLRIRQ---LQVNLMRIKKLLEQK 190 R ++++L R L + Sbjct: 60 QPRSGSGKVVEIDLDRQLLLAVED 83 >gi|325661782|ref|ZP_08150405.1| hypothetical protein HMPREF0490_01140 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472035|gb|EGC75250.1| hypothetical protein HMPREF0490_01140 [Lachnospiraceae bacterium 4_1_37FAA] Length = 101 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++++E L +I+G + + ++VK FQ GL + Sbjct: 17 PGYVLENGSSGNKVRQMQEELNVIAGAYPAIPKITVDGIYGPATAASVKKFQSVFGLPAT 76 Query: 155 GMVDSSTLEAMN 166 G VD T ++ Sbjct: 77 GTVDYRTWYKIS 88 >gi|209548410|ref|YP_002280327.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534166|gb|ACI54101.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 268 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + ++Q +R + + V+V+ A L VE +R V +GR D Sbjct: 104 PAIPVSRVQPQFLRQEVDYQTAERPGTVIVDTKAHFLYFVEENGKAMRYGVGLGR-DGYA 162 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P +M++ + + +N Sbjct: 163 WSGRGVIQWKQKWPRWTPPV-----EMVSRQPEVRAFSAENGGM---------------- 201 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 +PG N + + + ++ Y +H TP+ +SGCVR Sbjct: 202 ------------NPGLQNPLGARAMYIFKDGQDTLYRIHGTPDWQSIGK---ATSSGCVR 246 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++++DL L Sbjct: 247 MLNQDVVDLYDRLPAKAE 264 >gi|90020795|ref|YP_526622.1| general secretion pathway protein A [Saccharophagus degradans 2-40] gi|89950395|gb|ABD80410.1| Peptidoglycan-binding domain 1 [Saccharophagus degradans 2-40] Length = 563 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G S ++ L ++ D + F A + VK+FQ +GL P G+V Sbjct: 482 TEALIQGQRSPAITWLAQKFAEL-DGREKPLTNDHFSAALAKRVKIFQRNNGLTPDGIVG 540 Query: 159 SSTL 162 TL Sbjct: 541 EQTL 544 >gi|302385683|ref|YP_003821505.1| Peptidoglycan-binding domain 1 protein [Clostridium saccharolyticum WM1] gi|302196311|gb|ADL03882.1| Peptidoglycan-binding domain 1 protein [Clostridium saccharolyticum WM1] Length = 421 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G S V++++E+L I + P F AV+ FQ GL + Sbjct: 337 PGFNLTVGASGDKVRQVQEQLDTIATVYTAIPRIRADGIFGPATAEAVRQFQSIFGLPVT 396 Query: 155 GMVDSSTL 162 G++D +T Sbjct: 397 GVIDFATW 404 >gi|39937502|ref|NP_949778.1| ErfK/YbiS/YcfS/YnhG protein [Rhodopseudomonas palustris CGA009] gi|192293291|ref|YP_001993896.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] gi|39651361|emb|CAE29883.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] gi|192287040|gb|ACF03421.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 227 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 296 FIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +++ + +H T +P +SGC+R+ N Sbjct: 132 LPSSVPGGIDNPLGARALYLYQGNKDTLFRIHGTNQPEYIGAS---ISSGCIRMTN 184 >gi|84685769|ref|ZP_01013665.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Maritimibacter alkaliphilus HTCC2654] gi|84665862|gb|EAQ12336.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacterales bacterium HTCC2654] Length = 203 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 46/195 (23%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + + +R+ + + + +LV+I + +L N V V Sbjct: 42 EVERDLSEVVRRNISSFRTLDWRPYFDNLNNGAILVDITSRALHFWNNDGVYKLYPTSVP 101 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + T + + R + P W S+ + ++P++ Sbjct: 102 LTEDLTRRGRTSVTRKVEGPEWRPTPSMKE--------RNPEW----------------- 136 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 G N + + + + +H T + R ++G Sbjct: 137 --------------PDFIPAGPGNPLGTHALYLGWQY-YRIHGTHDTRKIG---RRSSNG 178 Query: 343 CVRV--RNIIDLDVW 355 C+ + NI +L Sbjct: 179 CIGLYNENIAELFSL 193 >gi|295706189|ref|YP_003599264.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium DSM 319] gi|294803848|gb|ADF40914.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium DSM 319] Length = 346 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--P 153 LP L G+S +V++L++ L + + + AV+ FQ+ + L Sbjct: 270 PLPNGILKQGDSGEAVKQLQKALNAVNF--KVGPVDGIYGVQTKDAVRRFQLVY-LPYDV 326 Query: 154 SGMVDSST 161 G+ T Sbjct: 327 DGIYGPQT 334 >gi|228913445|ref|ZP_04077076.1| hypothetical protein bthur0012_6860 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846196|gb|EEM91217.1| hypothetical protein bthur0012_6860 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 219 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 33 NKYKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|118443521|ref|YP_878230.1| N-acetylmuramoyl-L-alanine amidase [Clostridium novyi NT] gi|118133977|gb|ABK61021.1| N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cellwall hydrolase) (Autolysin) [Clostridium novyi NT] Length = 431 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + ++ERLI G G +F + AV Q + L G+V T A Sbjct: 368 GAKGNITKIIQERLIDKGYSVGKWGADGSFGSGTYDAVVKLQKDNSLSADGIVGKDTWRA 427 Query: 165 M 165 + Sbjct: 428 L 428 >gi|13476341|ref|NP_107911.1| hypothetical protein mll7632 [Mesorhizobium loti MAFF303099] gi|14027102|dbj|BAB54056.1| mll7632 [Mesorhizobium loti MAFF303099] Length = 277 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ +R ++V+ L V G +R V +GR + Sbjct: 71 PAIPFDRIDPQFLRQIVPDPTGQKPGTIIVDTTGHFLYLVRPGGQAIRYGVGLGRAGFE- 129 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + P W P +I + L+ P + + Sbjct: 130 WSGDAVVQWKQKWPKWTPPDEMIARQ--PELK--PYSADNGGM----------------- 168 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + + + + Y +H +PE +SGCVR Sbjct: 169 ------------PGGLKNPLGARALYLFQGNVDTLYRLHGSPEWKSIGKS---VSSGCVR 213 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + TP Sbjct: 214 LMNQDIIDLYDRVPSKTP 231 >gi|317127871|ref|YP_004094153.1| peptidase S8 and S53 subtilisin kexin sedolisin [Bacillus cellulosilyticus DSM 2522] gi|315472819|gb|ADU29422.1| peptidase S8 and S53 subtilisin kexin sedolisin [Bacillus cellulosilyticus DSM 2522] Length = 1027 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 8/144 (5%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L+ + + + +++ F + PI + Sbjct: 886 LLSTTMALGTHSQEVVTLKNNLATLGFHI----SNNPTTYYGPITEQVVREFQRYYGLKM 941 Query: 86 QDILSR---GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + S+ + PL G S +L+ L + G + + E V Sbjct: 942 TGVASQETLNKIESVLSSPLRNGQHHESAIQLKINLSLLGFHVSNNPT-TYYGPMTERRV 1000 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMN 166 + FQ HGL +G+ D TL + Sbjct: 1001 REFQSAHGLIVNGIADEITLAKIA 1024 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 22/182 (12%) Query: 35 VLDEIINES-YHSIVNDRFDNFLARVD--------MGIDSDIPIISKETIAQTEKAIAFY 85 ++EI++ + ++ + P ++ + Sbjct: 812 KIEEILSSPLRNGQHDEGAIQLKINLSLLGFHISNNPTTHYGPTTERKVREFQQVNGLKV 871 Query: 86 QDILSRGGWPELP---IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I + + + LG S V L+ L G + + E V Sbjct: 872 NGIADKVTLKTIQELLSTTMALGTHSQEVVTLKNNLATLGFHISNNPT-TYYGPITEQVV 930 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR---------QLQVNLMRIKKLLEQKMGL 193 + FQ +GL +G+ TL + + +R QL++NL + + Sbjct: 931 REFQRYYGLKMTGVASQETLNKIESVLSSPLRNGQHHESAIQLKINLSLLGFHVSNNPTT 990 Query: 194 RY 195 Y Sbjct: 991 YY 992 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 4/108 (3%) Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVSVQRLRERL 118 P ++ EK I ++ P+ LG V L+ L Sbjct: 708 PTTYYGPTTERKVREFQEKYGLRVNGIADEITLKKIESLINSPMALGTYRKDVITLKNNL 767 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 I G + + E V+ FQ +GL+ +G+ TLE + Sbjct: 768 AILGFHISNNPT-TYYGPTTERVVREFQDYYGLEVTGIASQETLEKIE 814 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 9/92 (9%) Query: 83 AFYQDILSRG--------GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Y +++ G E+ PL G S +L+ L D S + + Sbjct: 654 QEYYGLVATGMITTDTKVKIQEILSSPLRNGQHHDSAIQLKINLSFL-DFHVSNNPTTYY 712 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 E V+ FQ ++GL +G+ D TL+ + Sbjct: 713 GPTTERKVREFQEKYGLRVNGIADEITLKKIE 744 Score = 43.5 bits (101), Expect = 0.073, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 10/96 (10%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST---LEAM 165 + + +E L+ G L + ++ F+ E A++ FQ +GL +GM+ + T ++ + Sbjct: 618 EELIQFQEDLMRLGFL-NNSDVNGEFNIETEVAIRDFQEYYGLVATGMITTDTKVKIQEI 676 Query: 166 NVPV------DLRIRQLQVNLMRIKKLLEQKMGLRY 195 QL++NL + + Y Sbjct: 677 LSSPLRNGQHHDSAIQLKINLSFLDFHVSNNPTTYY 712 >gi|257064653|ref|YP_003144325.1| negative regulator of beta-lactamase expression [Slackia heliotrinireducens DSM 20476] gi|256792306|gb|ACV22976.1| negative regulator of beta-lactamase expression [Slackia heliotrinireducens DSM 20476] Length = 248 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V++L+ L G G S FDAY E A++ FQ+ GL+P G+ T + Sbjct: 29 QGQDVEQLQTALGALGF--ACGGASGTFDAYTEGALRKFQLNMGLEPDGIAGLKTYD 83 >gi|170749324|ref|YP_001755584.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170655846|gb|ACB24901.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 316 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 82/251 (32%), Gaps = 47/251 (18%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V G + P++GLS +A AV +D + + T + V Sbjct: 95 DPTVPA------RPGSVPPAEGLSPL-EAAKAKAVLRAPDNEPIDYAKVYGPITDDVFPV 147 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 +++ +R + ++V+ A L VE R V VG+ Sbjct: 148 Q-AFNYKKMNPAFLRQEIAYHGPYEPGTIIVDPRAHQLTLVEANGRARRYGVGVGKQG-F 205 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 + + +N P W P+ +I + L + L+ Sbjct: 206 SWSGTATVNSKQAWPDWYPPKEMIARS--PKLASEVDKLQSG------------------ 245 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCV 344 G N + + + + +++ + +H T EP +SGC+ Sbjct: 246 ----------LGVAGGLRNPLGARAMYLWQGNKDTLFRIHGTLEPFSIGKS---VSSGCI 292 Query: 345 RV--RNIIDLD 353 R+ ++ IDL Sbjct: 293 RMINQDAIDLF 303 >gi|149201932|ref|ZP_01878906.1| ErfK/YbiS/YcfS/YnhG [Roseovarius sp. TM1035] gi|149144980|gb|EDM33009.1| ErfK/YbiS/YcfS/YnhG [Roseovarius sp. TM1035] Length = 188 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 6/93 (6%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L I K P PG N + + + +H Sbjct: 91 LTRRGYTQIVRKRVGPDWTPTQSMRERDPTLPAYMPPGPGNPLGTHALYLSWP-AYLVHG 149 Query: 326 TPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 T + R +SGC+ + N I +L + Sbjct: 150 THDTRKIG---RQSSSGCIGLYNEHIEELFAKV 179 >gi|296444850|ref|ZP_06886812.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296257518|gb|EFH04583.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 190 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 7/122 (5%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P ++ Y+V+ R+ + + + R+ + + I K + + Sbjct: 58 PRGSVVVSTKERRLYYVVSRNRAVEYGVGVGREG---FEWAGVKTITAKREWPDWRPPEA 114 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 P+ + G N + + + S +H + EP +SGC+R+ N Sbjct: 115 MLKRRPDLPRHMEGGMDNPLGARAMYLGSSQ-YRIHGSNEPDTMGA---AVSSGCIRMTN 170 Query: 349 II 350 Sbjct: 171 AD 172 >gi|228906509|ref|ZP_04070385.1| hypothetical protein bthur0013_6860 [Bacillus thuringiensis IBL 200] gi|228853058|gb|EEM97836.1| hypothetical protein bthur0013_6860 [Bacillus thuringiensis IBL 200] Length = 253 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 67 TKYKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|225377726|ref|ZP_03754947.1| hypothetical protein ROSEINA2194_03377 [Roseburia inulinivorans DSM 16841] gi|225210403|gb|EEG92757.1| hypothetical protein ROSEINA2194_03377 [Roseburia inulinivorans DSM 16841] Length = 425 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLI-ISGDLD--PSKGLSVAFDAYVESAVKLFQMRHG 150 WP L +G + V++++E+L IS P+ + +AV+ FQ G Sbjct: 340 WPR---YNLEVGAAGDKVRQIQEQLARISQAYPAIPTITPDGIYGEATRAAVEKFQSIFG 396 Query: 151 LDPSGMVDSSTL 162 L +G+VD T Sbjct: 397 LPVTGVVDYRTW 408 >gi|254473464|ref|ZP_05086861.1| ErfK/YbiS/YcfS/YnhG [Pseudovibrio sp. JE062] gi|211957580|gb|EEA92783.1| ErfK/YbiS/YcfS/YnhG [Pseudovibrio sp. JE062] Length = 226 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 48/161 (29%), Gaps = 45/161 (27%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L V +R V VGR + I P W P +I + Sbjct: 90 LYLVRGDGTAMRYGVGVGRAG-FGWNGDAVIQYKRQWPKWTPPAEMIAR----------- 137 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY 322 PE F + PG N + + + ++ Y Sbjct: 138 -------------------------QPELEEFRYGMAPGIENPLGARALYLFQNGKDTLY 172 Query: 323 -MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +H T E +SGC+R+ +++IDL + + Sbjct: 173 RLHGTNEHWSIGKN---VSSGCIRLLNQDVIDLYNRVPNGS 210 >gi|163815210|ref|ZP_02206587.1| hypothetical protein COPEUT_01368 [Coprococcus eutactus ATCC 27759] gi|158449405|gb|EDP26400.1| hypothetical protein COPEUT_01368 [Coprococcus eutactus ATCC 27759] Length = 410 Score = 52.3 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V +L+ +L I S + + + AVK FQ L + Sbjct: 326 PGYDLTIGSSGDKVFQLQRQLARIALNYPAIGSIAVDGVYGQHTADAVKNFQQIFNLPAT 385 Query: 155 GMVDSSTLEAMNV 167 G+ D T ++ Sbjct: 386 GVTDYKTWYKISQ 398 >gi|331090375|ref|ZP_08339256.1| hypothetical protein HMPREF1025_02839 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401122|gb|EGG80715.1| hypothetical protein HMPREF1025_02839 [Lachnospiraceae bacterium 3_1_46FAA] Length = 438 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L +I+G + + +V+ FQ L + Sbjct: 354 PGYVLEIGSSGEKVRQIQEQLNVIAGAYPAIPKITADGIYGSKTAESVRKFQEVFQLPQT 413 Query: 155 GMVDSSTLEAMN 166 G VD ST ++ Sbjct: 414 GKVDYSTWYKIS 425 >gi|229175729|ref|ZP_04303235.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus MM3] gi|228607680|gb|EEK64996.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus MM3] Length = 153 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 38/167 (22%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VN ++ +NG+ TV G+ TP +I + N + I D Sbjct: 32 IVNTQLNKMDYYQNGQFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD-- 88 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 N + + Sbjct: 89 -----------------------------------------------PRNPLGDRWLGLN 101 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 102 MAGTYGTTYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFER 143 >gi|190891261|ref|YP_001977803.1| hypothetical protein RHECIAT_CH0001648 [Rhizobium etli CIAT 652] gi|190696540|gb|ACE90625.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 203 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 46/176 (26%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +++ +L + VGR +Q +R+ +P W Sbjct: 66 PSTRSARGNIVIATREHTLIYTTASGEQFAYPIAVGREGKQ-WYGSTRVVSKRMHPEWRP 124 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 S+ QK P G N Sbjct: 125 TASMRQK---------------------------------------NPRLPAVVKAGPAN 145 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 + + I +H T +P +SGC R+ ++ +L + T Sbjct: 146 PLGTRAIYLADG-LLRIHGTNDPSSIGTN---ASSGCFRMYREDVEELYDMVQPGT 197 >gi|42779896|ref|NP_977143.1| hypothetical protein BCE_0819 [Bacillus cereus ATCC 10987] gi|42735813|gb|AAS39751.1| conserved domain protein [Bacillus cereus ATCC 10987] Length = 253 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 40/156 (25%), Gaps = 54/156 (34%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +LVN+ L ENG V GR TP + I Sbjct: 23 DHLILVNLTTNQLSFFENGNYTKTFPVTTGRDRTPTPEGNFCIITKF------------- 69 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ +Y + + N + + Sbjct: 70 --------KNKEY---HRKKIAGGA--------------------------PNNPLGTRW 92 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +N +H T + ++GC+R+ + Sbjct: 93 LGL-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|324324794|gb|ADY20054.1| hypothetical protein YBT020_04040 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 253 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 40/156 (25%), Gaps = 54/156 (34%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +LVN+ L ENG V GR TP + I Sbjct: 23 DHLILVNLTTNQLSFFENGNYTKTFPVTTGRDRTPTPEGNFCIITKF------------- 69 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ +Y + + N + + Sbjct: 70 --------KNKEY---HRKKIAGGA--------------------------PNNPLGTRW 92 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +N +H T + ++GC+R+ + Sbjct: 93 LGL-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|241206998|ref|YP_002978094.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860888|gb|ACS58555.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T +A + I +++ R + ++VN L + +R + Sbjct: 52 TKDAGYSLPAIPIDRVKPQFRRQVVSYQTTERPGTIIVNTRERFLYYILANGKAMRYGIG 111 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ + + P W P+ + + L + ++ D G Sbjct: 112 VGKQGFA-WAGTAYVAWKQEWPNWHPPKEMAVRR--PDLAK----------YVEDGMG-- 156 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVV 336 PG N + + + ++ + +H TPE Sbjct: 157 ---------------------PGLTNPLGARAMYLFNEDGKDTLFRLHGTPEWASIGT-- 193 Query: 337 RFETSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 194 -AASSGCIRLMNQDVIDL 210 >gi|163852311|ref|YP_001640354.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|218531069|ref|YP_002421885.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|240139647|ref|YP_002964123.1| hypothetical protein MexAM1_META1p3099 [Methylobacterium extorquens AM1] gi|163663916|gb|ABY31283.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|218523372|gb|ACK83957.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|240009620|gb|ACS40846.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 225 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 49/195 (25%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 +VP+ R R + R + ++V+I L V+ G L+ V VG+ Sbjct: 57 FDVPLVDRSR-IDPKYRRQEVAYSGPEAPGTIVVDIDKRHLALVQEGGTALQYGVGVGKA 115 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + + I +K + Sbjct: 116 G-----FSWKGD-----------ARIGRKGVWP------------------------DWS 135 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETS 341 P + G N + + + +R+ + +H T EP + +S Sbjct: 136 PTTTMVSLNPGIERSRKGGIDNPLGARALYLYQGNRDTMFRIHGTNEPWSIGEQM---SS 192 Query: 342 GCVRV--RNIIDLDV 354 GCVR+ +I+DL Sbjct: 193 GCVRMLNEDIVDLFE 207 >gi|325171175|ref|YP_004251150.1| putative Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1] gi|323512570|gb|ADX88025.1| putative Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1] gi|323512797|gb|ADX88251.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2006_D] gi|323513025|gb|ADX88478.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2006_C] gi|323513250|gb|ADX88702.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2006_B] gi|323513477|gb|ADX88928.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2006_A] gi|323513708|gb|ADX89158.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2005_A] gi|323513939|gb|ADX89388.1| Gp5 baseplate hub subunit and tail lysozyme (Shigella phage phiSboM-AG3) [Vibrio phage ICP1_2001_A] gi|323514167|gb|ADX89615.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2004_A] Length = 238 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 L G+S V+ ++E L G +KG+ F+ ESAVK FQ G++ + Sbjct: 3 LKRGSSGADVKNMQEYLTALGY--DTKGVEGTFEGGTESAVKAFQKDMSFTVVDGIIGNQ 60 Query: 161 TLE 163 T + Sbjct: 61 TAK 63 >gi|317502111|ref|ZP_07960292.1| spore cortex-lytic enzyme SleC [Lachnospiraceae bacterium 8_1_57FAA] gi|316896500|gb|EFV18590.1| spore cortex-lytic enzyme SleC [Lachnospiraceae bacterium 8_1_57FAA] Length = 438 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L +I+G + + +V+ FQ L + Sbjct: 354 PGYVLEIGSSGEKVRQIQEQLNVIAGAYPAIPKITADGIYGSKTAESVRKFQEVFQLPQT 413 Query: 155 GMVDSSTLEAMN 166 G VD ST ++ Sbjct: 414 GKVDYSTWYKIS 425 >gi|288554111|ref|YP_003426046.1| carboxy-terminal processing protease [Bacillus pseudofirmus OF4] gi|288545271|gb|ADC49154.1| carboxy-terminal processing protease [Bacillus pseudofirmus OF4] Length = 487 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L L + ++ + L G +D E AV+ FQ GL + Sbjct: 390 PLTGDETLTLDMMNEQIRSAQTMLKGLGH--EPGRTDGYYDEQTEQAVRAFQKAQGLSET 447 Query: 155 GMVDSSTLEAMNV 167 G +D T A+ Sbjct: 448 GDIDEETAGALQQ 460 >gi|228944497|ref|ZP_04106868.1| hypothetical protein bthur0007_6690 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815165|gb|EEM61415.1| hypothetical protein bthur0007_6690 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 226 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 40 NKYKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 95 Query: 347 RN 348 + Sbjct: 96 HD 97 >gi|225453480|ref|XP_002274477.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297734565|emb|CBI16616.3| unnamed protein product [Vitis vinifera] Length = 353 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ + L++ G L ++ FD +ESAV +Q + GL +G +DS T Sbjct: 55 RRGSRISGMAELKKYFNRFGYLGFQDGNVTDVFDTRLESAVAAYQAKLGLPVTGRLDSET 114 Query: 162 LEAMNVP 168 L M P Sbjct: 115 LSQMMSP 121 >gi|209966451|ref|YP_002299366.1| hypothetical protein RC1_3190 [Rhodospirillum centenum SW] gi|209959917|gb|ACJ00554.1| hypothetical protein RC1_3190 [Rhodospirillum centenum SW] Length = 385 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 8/74 (10%) Query: 105 GNSSVS------VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+S V ++ RL G P E+A++ FQ L G Sbjct: 313 GDSGPRPLDRAGVAEVQRRLKALGY--PMGRADGLTGPRTEAAIRAFQKDRRLTVDGRAT 370 Query: 159 SSTLEAMNVPVDLR 172 ++ LE + R Sbjct: 371 AALLEQIRAADGTR 384 >gi|28373183|ref|NP_783826.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium tetani E88] gi|28208767|gb|AAO37449.1|AF528097_55 putative N-acetylmuramoyl-L-alanine amidase [Clostridium tetani E88] Length = 227 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +V+ ++E+L+ G S G +A+K FQ +G+ G+V T Sbjct: 167 KDNNVRIIQEKLMEKGYNVGSYGADGYLGGTTLNAIKSFQRDNGILVDGIVGRDTW 222 >gi|196037419|ref|ZP_03104730.1| conserved domain protein [Bacillus cereus NVH0597-99] gi|196031661|gb|EDX70257.1| conserved domain protein [Bacillus cereus NVH0597-99] Length = 253 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIEFY 316 ++ Y + + + E + + ++ G N + + + Sbjct: 39 ENGNYA--KTFPVTTGRDRTPTPEGNFCIITKYKNKEYHRKKIAGGAPNNPLGTRWLGL- 95 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 96 DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|290962512|ref|YP_003493694.1| hypothetical protein SCAB_82141 [Streptomyces scabiei 87.22] gi|260652038|emb|CBG75170.1| putative membrane protein [Streptomyces scabiei 87.22] Length = 299 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 4/74 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L LG+ V L+ RL G + +D V+SAV+ +Q+ L G+ Sbjct: 226 VLGLGDRGAEVTELQLRLNEVGFYNGDA--DGEYDREVQSAVRGYQLTRVLLEDESGVYG 283 Query: 159 SSTLEAMNVPVDLR 172 +T ++ Sbjct: 284 EATRASLESETAEP 297 >gi|290954841|ref|YP_003486023.1| peptidoglycan-binding surface protein [Streptomyces scabiei 87.22] gi|260644367|emb|CBG67452.1| putative peptidoglycan-binding surface protein [Streptomyces scabiei 87.22] Length = 275 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 KG+ +F ++AV+ FQ GL+ G+V T + P Sbjct: 232 PKGIDASFGPNTKAAVQRFQRSRGLEDDGIVGPMTWRELRKP 273 >gi|88812001|ref|ZP_01127254.1| hypothetical protein NB231_06411 [Nitrococcus mobilis Nb-231] gi|88790885|gb|EAR21999.1| hypothetical protein NB231_06411 [Nitrococcus mobilis Nb-231] Length = 1063 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%) Query: 101 PLHLGNSSVSVQRLRERLIISG--------DLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 PL G +V+ +++ L+ G +L P F + VK FQ R+ L Sbjct: 370 PLRRGAKGDAVKLVQQALLQWGCDFSSESVNLLPRYRDDGGFGLEMYLGVKEFQERNRLG 429 Query: 153 PSGMVDSSTL 162 G+V + TL Sbjct: 430 NDGVVGTETL 439 >gi|205375088|ref|ZP_03227879.1| carboxyl-terminal protease [Bacillus coahuilensis m4-4] Length = 156 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V+ +E L G + AVK FQ + GL +G +DS Sbjct: 65 KTLTKEMNNDQVKSAQEMLYSLGY--GPGRTDGYYSNQTAIAVKAFQSKAGLTSTGNIDS 122 Query: 160 STLEAMNVPVDLRIRQ 175 T A+ + I + Sbjct: 123 QTASALEKTIMKEIEK 138 >gi|254411200|ref|ZP_05024977.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181701|gb|EDX76688.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 282 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG----DLDPS--KG 129 A T+ A+ +Q I+ + + N +++ LRE +G L Sbjct: 185 ADTKAALKTFQAIVGVTPTGTADAKTWQIINQILAMPVLREN-HATGFVVKYLQRRIGAT 243 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + + AVK FQ + G+ G++ + + + Sbjct: 244 PDGIYGSGTAGAVKRFQQQQGITADGIIGAQSWSKILAD 282 >gi|321311605|ref|YP_004203892.1| carboxy-terminal processing protease [Bacillus subtilis BSn5] gi|320017879|gb|ADV92865.1| carboxy-terminal processing protease [Bacillus subtilis BSn5] Length = 466 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G++ +V+ ++ L G ++ +D S VK FQ + L+ +G++ Sbjct: 376 ADKTYKSGDTGTNVKVAQKMLKALGY---KVKVNSTYDQDFVSVVKQFQKKEKLNETGIL 432 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMR 182 T + + + ++ + + Sbjct: 433 TGDTTTKLMIELQKKLSDNDTQMEK 457 >gi|304393363|ref|ZP_07375291.1| lipoprotein [Ahrensia sp. R2A130] gi|303294370|gb|EFL88742.1| lipoprotein [Ahrensia sp. R2A130] Length = 238 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 36/257 (14%) Query: 113 RLRER--LIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE-AMNVP 168 +R R L ++G L S S FD S + +G + + + A+ V Sbjct: 4 AIRRREFLAVAGAGLLVSGCNSSNFDTMTTSGIDRM-------STGSIGAHQIRPAIGVD 56 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 +LR G Y + L AV + K+ R Sbjct: 57 ANLRSA-----------------GKMYGEIRDGEHLLAAVPHDKMDPRFRRQRVVNKTGM 99 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P ++ + ++V+ + + + + ++ D I + + E+ Sbjct: 100 PPGTIVVSPHQHHAWYVLSNDEAVRYGVGVGKAGFEWQGDAVIARKAQWPRWTPPAEMIQ 159 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 P+ F Q+ G N + + + R+ Y +H TPE + +SGC+R Sbjct: 160 RRPDLVKFAGGQEGGIDNPLGARALYLFADGRDTLYRLHGTPEWDSIGKSM---SSGCIR 216 Query: 346 V--RNIIDLDVWLLKDT 360 ++IIDL + T Sbjct: 217 FLNQDIIDLYNRVPNGT 233 >gi|294629109|ref|ZP_06707669.1| peptidodoglycan-binding membrane protein [Streptomyces sp. e14] gi|292832442|gb|EFF90791.1| peptidodoglycan-binding membrane protein [Streptomyces sp. e14] Length = 184 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Query: 90 SRGGWPELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + G P P R L G+ V L+ RL + ++ +D VE +V+++Q Sbjct: 102 ATTGKPSAPARLGPVLQRGDHGPEVAELQSRLAEL--YLYTGPVNGDYDRRVEDSVRVYQ 159 Query: 147 MRHGLDPS--GMVDSSTLEAMN 166 G G+ +T ++ Sbjct: 160 WSRGTTSDGLGVYGPATRASLE 181 >gi|227818950|ref|YP_002822921.1| hypothetical protein NGR_b07100 [Sinorhizobium fredii NGR234] gi|227337949|gb|ACP22168.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 238 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +++ R ++V++ L V+ LR V +GR + Sbjct: 64 PAVPYQKIDPRFHRQVVADPTGDPPGTLVVDVGNHFLYLVQVKGQALRYGVALGRAGFE- 122 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + P W+ +++++ L++ L+ + Sbjct: 123 WSGRGVVQYKRKWPRWIPADEMLERE--PKLKK--YSLERGGME---------------- 162 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVR 345 PG N + + + F + + Y +H +PE +SGCVR Sbjct: 163 -------------PGPDNPLGARALYIFQNGEDTLYRVHGSPEWWTIGQ---HVSSGCVR 206 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + TP Sbjct: 207 MINQDVIDLYDRVADGTP 224 >gi|163839614|ref|YP_001624019.1| cell wall hydrolase [Renibacterium salmoninarum ATCC 33209] gi|162953090|gb|ABY22605.1| cell wall hydrolase [Renibacterium salmoninarum ATCC 33209] Length = 196 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G +S V RL++ L +G + + F +AVK +Q HGL G+V +T Sbjct: 85 IEKGQNSGCVTRLQQLLNNNG---AKRTVDGGFGDGTFTAVKSYQSAHGLSADGIVGPNT 141 Query: 162 LEAMNVPVDL 171 A+ Sbjct: 142 KGALEGGPAP 151 >gi|147768133|emb|CAN60606.1| hypothetical protein VITISV_020065 [Vitis vinifera] Length = 260 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 9/92 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ +Q++++ L G + S+ S F+ +ES++K FQ + L+ +G +D+ Sbjct: 52 KKGDKREGIQKVKQYLQRYGYISSTHYSQMGSDDFNDALESSLKAFQTFYHLNSTGTLDA 111 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +T M+ P + L + L ++ Sbjct: 112 ATATLMSRP------RYAYPLHSVPWLPPEQP 137 >gi|319400781|gb|EFV89000.1| C-terminal processing peptidase family protein [Staphylococcus epidermidis FRI909] Length = 491 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--QIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|315179130|gb|ADT86044.1| general secretion pathway protein A [Vibrio furnissii NCTC 11218] Length = 530 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 2/88 (2%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + I R W + L G +V L +L L + +D V Sbjct: 431 REWIEPLWQGEYRVVWQPSFYQTLRSGMRGEAVTLLDVKLSRL--LGEPERHVTEYDQEV 488 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + V++FQ + G+ TL ++ Sbjct: 489 KRKVEIFQRWQHMQVDGIAGRQTLRQLD 516 >gi|308173220|ref|YP_003919925.1| N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] gi|307606084|emb|CBI42455.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus amyloliquefaciens DSM 7] gi|328553860|gb|AEB24352.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus amyloliquefaciens TA208] gi|328911284|gb|AEB62880.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus amyloliquefaciens LL3] Length = 317 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + +V++++ L + G + +AVK FQ Sbjct: 237 PLPSGVIKVTKPLTKGTNVKQVQTALSALYFYPDKGAKNHGADGVYGPKTANAVKRFQSV 296 Query: 149 HGLDPSGMVDSSTLEAMN 166 GL G+ T + Sbjct: 297 SGLTADGIYGPKTKAKIE 314 >gi|282897482|ref|ZP_06305483.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] gi|281197577|gb|EFA72472.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] Length = 319 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 8/56 (14%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S ++ L+ R + E+A+K +Q ++GL G++ +T Sbjct: 267 SGPIMRYLQYR--------VGTTPDGIYGRQTEAAIKRYQQQNGLTADGIIGPATW 314 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 14/101 (13%) Query: 89 LSRGGWPELPIRPLHL-----GNSSV------SVQRLRERLIISGDLDPSK---GLSVAF 134 + +G +LP P+ G+ S+ RL++ L D + Sbjct: 162 IVKGLTGKLPTTPVKPVEDVTGDQDTKENKDTSILRLQKALNQLKITDRNNRPLTEDNFT 221 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 SAV+ FQ G+ P+GM +T +A+N + R Q Sbjct: 222 GPATSSAVEKFQRVVGIIPTGMATQTTWDAINQILAKRTVQ 262 >gi|242242707|ref|ZP_04797152.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis W23144] gi|242233843|gb|EES36155.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis W23144] Length = 491 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--QIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|229073419|ref|ZP_04206555.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus cereus F65185] gi|228709726|gb|EEL61764.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus cereus F65185] Length = 335 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR-HGLDPSGM 156 P +P+ G+ +++ ++ L + + F E VK +Q L G+ Sbjct: 274 PGKPIKRGDRGRNIEAIQRTLRV--------SVDGIFGKETEEKVKEYQRNSSFLSIDGV 325 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 326 VGMQTWYAL 334 >gi|167622957|ref|YP_001673251.1| peptidoglycan-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352979|gb|ABZ75592.1| Peptidoglycan-binding domain 1 protein [Shewanella halifaxensis HAW-EB4] Length = 537 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G S+ +Q L L D P FD +E +K FQ +HGL Sbjct: 448 WQAPQHQPKEIGQSANQAQIQWLENSLARITDTPPRLVSH--FDPQLEQKLKAFQRQHGL 505 Query: 152 DPSGMVDSSTLEAMNV---PVDLRIRQ 175 G+ + TL +N+ R+ Q Sbjct: 506 IADGIAGTQTLVQLNLYLSDAGPRLGQ 532 >gi|13474192|ref|NP_105760.1| hypothetical protein mll5027 [Mesorhizobium loti MAFF303099] gi|14024944|dbj|BAB51546.1| mll5027 [Mesorhizobium loti MAFF303099] Length = 255 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 22/216 (10%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L+ V +VP + N+ + + + +P L+ Sbjct: 53 LELDNTVT------GSVPPMRPAISVDKNITSPDLMYAALTDNGFNVPEVP--YLKVKPE 104 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 + + L R+ ++ P + + + + ++ N Sbjct: 105 FRRQIVVDTTGEAPGTIVVHLKERMLYLV------QPGGDAIRYGVGIGKDGFRWSGRAN 158 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTP 327 I E E+ PE + Q G N + + + Y +H +P Sbjct: 159 IQYGREWPTWTPPPEMIQRKPELVKWQGGQPGGLTNPLGARALYIYQDGKDTGYRIHGSP 218 Query: 328 EPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 E + +SGCVR+ ++IIDL + K P Sbjct: 219 EWWSIGQAM---SSGCVRLINQDIIDLYSRVSKKNP 251 >gi|228925934|ref|ZP_04089015.1| hypothetical protein bthur0010_6570 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932178|ref|ZP_04095064.1| hypothetical protein bthur0009_6580 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827474|gb|EEM73222.1| hypothetical protein bthur0009_6580 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833646|gb|EEM79202.1| hypothetical protein bthur0010_6570 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 219 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 33 NKYKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|110634368|ref|YP_674576.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Mesorhizobium sp. BNC1] gi|110285352|gb|ABG63411.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Chelativorans sp. BNC1] Length = 251 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 20/153 (13%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAF 84 + I +++ Y + + D A + I+ + +A ++ A Sbjct: 90 DVNSFSIGVEIVNPGHQFGYRDFPSVQIDAVAALCLDICRRNA-ILPQRVLAHSDTAPGR 148 Query: 85 YQDILSRGGWPELP---------------IRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 D + W L L G+ +V L+ RL G Sbjct: 149 KVDPGEKFPWKRLAEMGVGHYVDPERVTGGEVLAPGDRGSAVAGLQRRLAEYGY---GIE 205 Query: 130 LSVAFDAYVESAVKLFQMRHG-LDPSGMVDSST 161 + FDA E+ V FQ +G+ DSST Sbjct: 206 KTGVFDAETETVVAAFQRHFRPSAVNGIADSST 238 >gi|291483763|dbj|BAI84838.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. natto BEST195] Length = 317 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 7/78 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + V++++ L + G+ + +AVK FQ Sbjct: 237 PLPSGVIKVTSPLTKGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSV 296 Query: 149 HGLDPSGMVDSSTLEAMN 166 GL G+ T + Sbjct: 297 SGLTADGIYGPKTKAKLE 314 >gi|254562058|ref|YP_003069153.1| hypothetical protein METDI3663 [Methylobacterium extorquens DM4] gi|254269336|emb|CAX25302.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 224 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 60/207 (28%), Gaps = 57/207 (27%) Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 P D ++ + R +++ N ++V+I L V+ G Sbjct: 52 PDKPFDVPLVDRSRIDPKYRRQEVAYNGSEAPGT---------IVVDIDKRHLALVQEGG 102 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L+ V VG+ + + I +K + Sbjct: 103 TALQYGVGVGKAG-----FSWKGD-----------ARIGRKGVWP--------------- 131 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEP 329 P + G N + + + +R+ + +H T EP Sbjct: 132 ---------DWSPTTTMVSLNPGIERSRKGGIDNPLGARALYLYQGNRDTMFRIHGTNEP 182 Query: 330 ILFNNVVRFETSGCVRV--RNIIDLDV 354 + +SGCVR+ +I+DL Sbjct: 183 WSIGEQM---SSGCVRMLNEDIVDLFE 206 >gi|241113056|ref|YP_002972891.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861264|gb|ACS58930.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 224 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 47/187 (25%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L + K +R V VGR + + I+ P W P + ++ Sbjct: 81 LYVIMENKTAIRYGVGVGREGFK-WFGRATIDSKSLWPRWTPPPEMRKRH---------- 129 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NT 321 P F N + + + Sbjct: 130 ----------------------------PELPEFVAGGSPKNPLGPRAMYLHRDGVDTGY 161 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 H T EP +SGC+R+ N +D L + P + + + + + + Sbjct: 162 RFHGTLEPWSIGKD---ASSGCIRMFNEDAID--LYQRCPIGTAVQVLPHIADQAESAAQ 216 Query: 382 LATEVPV 388 ++ PV Sbjct: 217 VSQTTPV 223 >gi|116873286|ref|YP_850067.1| carboxy-terminal processing protease [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742164|emb|CAK21288.1| carboxy-terminal processing protease [Listeria welshimeri serovar 6b str. SLCC5334] Length = 496 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLRALDY--NVGKVDGLYDTDTEYAVQRFQSANKLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|220932697|ref|YP_002509605.1| YD repeat protein [Halothermothrix orenii H 168] gi|219994007|gb|ACL70610.1| YD repeat protein [Halothermothrix orenii H 168] Length = 2277 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V++++ L G + AV+ +Q GL G+V +T E + Sbjct: 2178 MRGDDVEQVQTFLNQQGY---DVTVDGILGPETAGAVRDYQEDKGLSVDGVVGPNTREEI 2234 Query: 166 NVP 168 Sbjct: 2235 KKD 2237 >gi|319779941|ref|YP_004139417.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165829|gb|ADV09367.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 205 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 45/197 (22%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +A + I ++ + R + + ++V+ L +E +R + VG Sbjct: 38 DAGYQLPRIPIEKVPMKYHRQEVNYDSPEKPGTIIVDTQNKFLYFIEGDGRAIRYGIGVG 97 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R + + I P W PR +IQ+ L + + Sbjct: 98 REGFE-WHGTAHIALKREWPTWTPPRQMIQRQ--PELEK-----FAGGME---------- 139 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR---NNTYMHDTPEPILFNNVVRFE 339 PG N + + + +++ + +H +PE + Sbjct: 140 -------------------PGLKNPLGARAMYLFNKGGDSGYRLHGSPEWNSIGKAM--- 177 Query: 340 TSGCVRV--RNIIDLDV 354 +SGC+R+ ++IIDL Sbjct: 178 SSGCIRLMNQDIIDLYD 194 >gi|225627072|ref|ZP_03785110.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|237815029|ref|ZP_04594027.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|225617907|gb|EEH14951.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|237789866|gb|EEP64076.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] Length = 293 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 129 PAIPIQKMDTRYLRQVVPDPTGEMPGTIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 187 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 188 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 219 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 220 SAKNGGM-----APGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 271 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 272 FLNQDIIDLYDRVPAKTP 289 >gi|224092310|ref|XP_002309553.1| predicted protein [Populus trichocarpa] gi|222855529|gb|EEE93076.1| predicted protein [Populus trichocarpa] Length = 298 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 103 HLGNSSVSVQRLRERLIISGDLD-----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G+ V +L++ G L + FD +E A+K +Q+ L P+G++ Sbjct: 46 KKGDKVEGVDQLKKFFHHFGYLTHGGLNNDEVDDDYFDETIERALKTYQINFNLKPTGVL 105 Query: 158 DSSTLEAMNVP 168 D+ T+ M P Sbjct: 106 DAETVSLMMKP 116 >gi|126729691|ref|ZP_01745504.1| hypothetical protein SSE37_04435 [Sagittula stellata E-37] gi|126709810|gb|EBA08863.1| hypothetical protein SSE37_04435 [Sagittula stellata E-37] Length = 272 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 64/200 (32%), Gaps = 34/200 (17%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L ++ L + R + + + +NG +++ +++ Sbjct: 49 LAEVEVLPPEPPRKRPLRPATRSMYMSTQDNGMTIPAVPEKYLSEEKK--------RQLV 100 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE------KGKEVFVEEVDWNSPEP 293 +II + L + + +G+ + DW + P Sbjct: 101 DYYAPYPAGTIIVDPVATKLYHIQGNDRAMQYTVAVGAAGRAFQGEAKVAYQRDWPTWTP 160 Query: 294 PNFIFRQDP------------GKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRF 338 + R++P G N + + + ++ Y +H T P + Sbjct: 161 TQNMIRREPEVYNQFKDGMEGGLDNPLGARALYLYRNGKDTLYRIHGTRSPASIGH---A 217 Query: 339 ETSGCVRV--RNIIDLDVWL 356 +SGC+R+ ++II L + Sbjct: 218 VSSGCIRLFNQDIIHLAEQV 237 >gi|298291397|ref|YP_003693336.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296927908|gb|ADH88717.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 233 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 49/219 (22%) Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--KLLEQKMGLRYVLVNIPAASLEAVE 209 P+G + + ++N + ++ ++++ L V Sbjct: 44 APTGTYGPM----ADRFPIAEVDTSRINPVYLRREVPYSTSQPPGTIIIDPREHFLYYVM 99 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII--QKDMMALLRQDPQYLK 267 G V +R V VG+ + IN P W P+ +I + D+ L + Sbjct: 100 PGGVAMRYGVGVGKEG-FGWSGSATINSKQEWPDWYPPKEMIDRRPDIKPQLTK------ 152 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MH 324 + +G G N + + + + ++ Y +H Sbjct: 153 -----LQSGQG---------------------VAGGLQNPLGARAMYLWQNGKDTLYRIH 186 Query: 325 DTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 T EP +SGC+R+ ++ IDL + T Sbjct: 187 GTLEPYTIGTN---VSSGCIRMINQDAIDLYNRVAVGTK 222 >gi|227506196|ref|ZP_03936245.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium striatum ATCC 6940] gi|227197220|gb|EEI77268.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium striatum ATCC 6940] Length = 393 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 12/80 (15%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLD------------PSKGLSVAFDAYVESAVKLFQM 147 R LH+G+ SV V R L G + FDA + +K FQ Sbjct: 3 RVLHIGDQSVRVAEARATLARLGLMKDYQGTLSDWKQQKYSESDKIFDAELSEVIKAFQQ 62 Query: 148 RHGLDPSGMVDSSTLEAMNV 167 G+ PSG++D TL + Sbjct: 63 SRGIVPSGVIDDLTLRELRQ 82 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 L + + Y + FD L+ V I+ I + + Sbjct: 31 QGTLSDWKQQKYSES-DKIFDAELSEVIKAFQQSRGIVPSGVIDDL--TLRELRQASYTL 87 Query: 93 GWPELPIRPLHLG--NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G L G V +L+++L G + F +A+ +Q+ +G Sbjct: 88 GARVLA---YEPGNVQVGDDVAQLQQQLQELGFYQQR--VDGHFGPDTHAALAEYQLNYG 142 Query: 151 LDPSGMVDSSTLEAMN 166 L G+ +T+ A++ Sbjct: 143 LQNDGVCGPTTINALS 158 >gi|218529555|ref|YP_002420371.1| peptidoglycan-binding protein [Methylobacterium chloromethanicum CM4] gi|218521858|gb|ACK82443.1| Peptidoglycan-binding domain 1 protein [Methylobacterium chloromethanicum CM4] Length = 232 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 19/58 (32%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V ++ L+ G G +AV FQ GL G+ T A+ Sbjct: 2 DVAAIQRALLARGYDLGKSGADGDAGPRTIAAVTAFQRSAGLVADGIAGPKTQAALQK 59 >gi|163849754|ref|YP_001637797.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163661359|gb|ABY28726.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 305 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 39/180 (21%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +R + ++V+ A L V R V VG+ + + +N Sbjct: 148 FLRQEVDFRTNEAPGTIVVDPKAHFLYLVLPNGRARRYGVGVGKQG-FSWSGSATVNSKQ 206 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P+ +I + L ++ L+ Sbjct: 207 AWPDWYPPKEMIARR--PDLAREVDKLQSG----------------------------LG 236 Query: 300 QDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 G N + + + + +++ + +H T EP +SGC+R+ ++ IDL Sbjct: 237 VPGGSRNPLGARAMYLWQNNKDTLFRIHGTLEPHSIGKS---VSSGCIRMINQDAIDLFN 293 >gi|157960800|ref|YP_001500834.1| peptidoglycan-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845800|gb|ABV86299.1| Peptidoglycan-binding domain 1 protein [Shewanella pealeana ATCC 700345] Length = 558 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G S+ +Q L L D P FD+ +E +K FQ +HGL Sbjct: 469 WQAPQNQPKEIGQSANQAQIQWLENSLARINDRAPRLV--DYFDSELEQQLKAFQRQHGL 526 Query: 152 DPSGMVDSSTLEAMNV---PVDLRIRQ 175 G+ + TL +N+ R+ Q Sbjct: 527 SADGIAGTQTLIQLNLYLSDAGPRLGQ 553 >gi|56695003|ref|YP_165349.1| ErfK/YbiS/YcfS/YnhG family protein [Ruegeria pomeroyi DSS-3] gi|56676740|gb|AAV93406.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Ruegeria pomeroyi DSS-3] Length = 208 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 45/182 (24%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLR-YVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 + +R+ + + +LV+ + +L E+ V V D Sbjct: 51 PEAPVRRNTSSFRALDWRPYFSNTRNGAILVDTVSRALHYWSEDQSVYRLFPSSVPLTDE 110 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 T + + R + P W S+ +++P++ Sbjct: 111 LTRRGRTSVIRKVVGPSWAPTPSMK--------KRNPEW--------------------- 141 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + + + + +H T + R ++GC+ + Sbjct: 142 ----------PDYIPPGPDNPLGTHALYLSWKY-YRIHGTHDTRKIG---RRSSNGCIGL 187 Query: 347 RN 348 N Sbjct: 188 YN 189 >gi|229074464|ref|ZP_04207493.1| hypothetical protein bcere0024_6530 [Bacillus cereus Rock4-18] gi|229106347|ref|ZP_04236790.1| hypothetical protein bcere0019_53120 [Bacillus cereus Rock3-28] gi|228677067|gb|EEL31501.1| hypothetical protein bcere0019_53120 [Bacillus cereus Rock3-28] gi|228708584|gb|EEL60728.1| hypothetical protein bcere0024_6530 [Bacillus cereus Rock4-18] Length = 253 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 36/156 (23%), Gaps = 54/156 (34%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +LVN+ L E G + GR TP + I N Sbjct: 23 DHLILVNLTTNQLSFFEEGNYTRTFPITTGRDRTPTPEGNFCIITKYKN----------- 71 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 K+ + N + + Sbjct: 72 KEYHRKKIRGGA---------------------------------------PNNPLGTRW 92 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + +H T + ++GC+R+ + Sbjct: 93 LGLDKKE-YAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|229095400|ref|ZP_04226391.1| hypothetical protein bcere0020_6560 [Bacillus cereus Rock3-29] gi|229114351|ref|ZP_04243769.1| hypothetical protein bcere0017_6500 [Bacillus cereus Rock1-3] gi|228669030|gb|EEL24454.1| hypothetical protein bcere0017_6500 [Bacillus cereus Rock1-3] gi|228687946|gb|EEL41833.1| hypothetical protein bcere0020_6560 [Bacillus cereus Rock3-29] Length = 253 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 36/156 (23%), Gaps = 54/156 (34%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +LVN+ L E G + GR TP + I N Sbjct: 23 DHLILVNLTTNQLSFFEEGNYTRTFPITTGRDRTPTPEGNFCIITKYKN----------- 71 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 K+ + N + + Sbjct: 72 KEYHRKKIRGGA---------------------------------------PNNPLGTRW 92 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + +H T + ++GC+R+ + Sbjct: 93 LGLDKKE-YAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|332992109|gb|AEF02164.1| hypothetical protein ambt_03050 [Alteromonas sp. SN2] Length = 558 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAF----DAYVESAVKLFQMRHGLDPSGMVDSST 161 +SS ++ +R RLI G L + D + +K FQ G+ G T Sbjct: 38 DSSAYIRAIRARLIELGYLGEGHKFANRHNPQTDRILIKKIKQFQYDAGITQDGWAGKLT 97 Query: 162 LEAMN 166 + + Sbjct: 98 WQVLE 102 >gi|89892890|ref|YP_516377.1| hypothetical protein DSY0144 [Desulfitobacterium hafniense Y51] gi|219666153|ref|YP_002456588.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfitobacterium hafniense DCB-2] gi|89332338|dbj|BAE81933.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536413|gb|ACL18152.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfitobacterium hafniense DCB-2] Length = 115 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 6/61 (9%) Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 A + + + +H T +P + GC+R+ N + L + T Sbjct: 54 NPGGAFGTRWLGLSLPD-YGIHGTNKPASIGT---QASLGCIRMHNHHVEALYDQVGAGT 109 Query: 361 P 361 P Sbjct: 110 P 110 >gi|168178137|ref|ZP_02612801.1| putative phage related N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum NCTC 2916] gi|182670829|gb|EDT82803.1| putative phage related N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum NCTC 2916] Length = 238 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 98 PIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L + +V+ ++ +L G G+ F +VK FQ L G Sbjct: 164 PGYLLKYNPNSFDANVKVIQSKLQNIGYSVGKSGVDGYFGDGTLLSVKCFQRDCNLYVDG 223 Query: 156 MVDSSTLEAM 165 +V T + + Sbjct: 224 IVGKDTWKVL 233 >gi|218528395|ref|YP_002419211.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218520698|gb|ACK81283.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 305 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 39/180 (21%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +R + ++V+ A L V R V VG+ + + +N Sbjct: 148 FLRQEVDFRTNEAPGTIVVDPKAHFLYLVLPNGRARRYGVGVGKQG-FSWSGSATVNSKQ 206 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P+ +I + L ++ L+ Sbjct: 207 AWPDWYPPKEMIARR--PDLAREVDKLQSG----------------------------LG 236 Query: 300 QDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 G N + + + + +++ + +H T EP +SGC+R+ ++ IDL Sbjct: 237 VPGGSRNPLGARAMYLWQNNKDTLFRIHGTLEPHSIGKS---VSSGCIRMINQDAIDLFN 293 >gi|217979969|ref|YP_002364116.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217505345|gb|ACK52754.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 79 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 291 PEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 P+ D G N + + + +++ + +H EP +SGC+R+ Sbjct: 3 ARRPDLPDSMDGGLENPLGARALYLYQGNKDTLFRIHGANEPNTIGQ---AVSSGCIRMT 59 Query: 348 NII 350 N Sbjct: 60 NAD 62 >gi|224826478|ref|ZP_03699580.1| Peptidoglycan-binding domain 1 protein [Lutiella nitroferrum 2002] gi|224601579|gb|EEG07760.1| Peptidoglycan-binding domain 1 protein [Lutiella nitroferrum 2002] Length = 553 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 2/102 (1%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSK 128 +T A+ W P PL G+ + V L + + + Sbjct: 434 GTQTFTLPVSALNQLWSGRYTLLWKAPPNYRAPLARGSRGLMVSWLNHQFGQPLEPLAAT 493 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 + FDA +E V FQ GL G+V TL + D Sbjct: 494 AKNPVFDARLEEQVMRFQRADGLPSDGIVGPHTLIRLTRNSD 535 >gi|153874337|ref|ZP_02002595.1| ErfK/YbiS/YcfS/YnhG family protein [Beggiatoa sp. PS] gi|152069197|gb|EDN67403.1| ErfK/YbiS/YcfS/YnhG family protein [Beggiatoa sp. PS] Length = 110 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHI 368 + Y+H T E + GC+R+ N +I+L +++ T R + Sbjct: 59 SYKRYIYIHGTAEENKIGQP---ASHGCIRMYNRDVIELFDLVMEGTKVDIRDEV 110 >gi|239636899|ref|ZP_04677898.1| carboxy- processing protease [Staphylococcus warneri L37603] gi|239597573|gb|EEQ80071.1| carboxy- processing protease [Staphylococcus warneri L37603] Length = 493 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + LG+++ V+ ++ L G ++ S FD +ESA+K FQ + L +G D Sbjct: 406 DKTYKLGDNNKHVKTMKIGLTALGFKVDNETKS--FDTSLESAIKAFQKDNDLTVNGEFD 463 Query: 159 SST 161 T Sbjct: 464 KET 466 >gi|296329600|ref|ZP_06872085.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673998|ref|YP_003865670.1| N-acetylmuramoyl-L-alanine amidase; PBSZ phage [Bacillus subtilis subsp. spizizenii str. W23] gi|296153098|gb|EFG93962.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412242|gb|ADM37361.1| N-acetylmuramoyl-L-alanine amidase; PBSZ phage [Bacillus subtilis subsp. spizizenii str. W23] Length = 297 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP + S V +++ L + G+ + AV FQ Sbjct: 216 PLPDGIIKLTTPYTSGEHVFQVQRALAALYFYPDKGAVNNGIDGIYGPKTADAVARFQSV 275 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ +T + Sbjct: 276 NGLTADGIYGPATKAKIAA 294 >gi|188582261|ref|YP_001925706.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179345759|gb|ACB81171.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 231 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 8/94 (8%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TY 322 + KG P + G N + + + Y+ N Sbjct: 123 FSWKGDARVGRKGVWPDWSPTTTMVSLNPGIERSRKGGIDNPLGARALYLYNGNRDTLFR 182 Query: 323 MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 +H T EP + +SGCVR+ +I+DL Sbjct: 183 IHGTNEPWSIGEQM---SSGCVRMLNEDIVDLYE 213 >gi|86143221|ref|ZP_01061623.1| putative phage-related protein [Leeuwenhoekiella blandensis MED217] gi|85830126|gb|EAQ48586.1| putative phage-related protein [Leeuwenhoekiella blandensis MED217] Length = 273 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 12/155 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V L E L G +S F +AVK FQ ++ L G+V Sbjct: 2 KTLRYRSRGQEVYFLEELLQKLGY---EVYVSTYFGLDTNNAVKDFQQKNNLVVDGIVGL 58 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T + + K L EQ + ++ L AV+ + Sbjct: 59 KTWSKLLAQENQIFD------ANSKLLSEQDLIDFAQRYDL---ELAAVKAVNEIESNGK 109 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 D+ + I + P++ + + Sbjct: 110 GFLVGDKPRILFEGHIFWRQLEAKGIDPKNYVSDE 144 >gi|306842165|ref|ZP_07474834.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO2] gi|306287752|gb|EFM59183.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO2] Length = 289 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 125 PAIPIQKMDTRYLRQVVPDPTGEMPGTIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 183 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 184 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 215 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 216 SAKNGGM-----APGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 267 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 268 FLNQDIIDLYDRVPAKTP 285 >gi|300856168|ref|YP_003781152.1| putative cell wall hydrolase [Clostridium ljungdahlii DSM 13528] gi|300436283|gb|ADK16050.1| putative cell wall hydrolase [Clostridium ljungdahlii DSM 13528] Length = 306 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V ++++L G L + + +D AV Q G++ T Sbjct: 240 IAKGHKSHVVLWIQQKLEQYGYLKKNSYTPMVYDEATFQAVTNLQKNWRKATDGILGPDT 299 Query: 162 LE 163 Sbjct: 300 WS 301 >gi|254558815|ref|YP_003065910.1| hypothetical protein METDI0176 [Methylobacterium extorquens DM4] gi|254266093|emb|CAX21845.1| conserved hypothetical protein precursor, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 292 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 39/180 (21%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +R + ++V+ A L V R V VG+ + + +N Sbjct: 135 FLRQEVDFRTNEAPGTIVVDPKAHFLYLVLPNGRARRYGVGVGKQG-FSWSGSATVNSKQ 193 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P+ +I + L ++ L+ Sbjct: 194 AWPDWYPPKEMIARR--PDLAREVDKLQSG----------------------------LG 223 Query: 300 QDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 G N + + + + +++ + +H T EP +SGC+R+ ++ IDL Sbjct: 224 VPGGSRNPLGARAMYLWQNNKDTLFRIHGTLEPHSIGKS---VSSGCIRMINQDAIDLFN 280 >gi|228969115|ref|ZP_04130029.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790604|gb|EEM38291.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus thuringiensis serovar sotto str. T04001] Length = 335 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR-HGLDPSGM 156 P +P+ G+ +++ ++ L + + F E VK +Q L G+ Sbjct: 274 PGKPIKRGDRGRNIEAIQRTLKL--------SVDGVFGKETEEKVKEYQRNSSFLSIDGV 325 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 326 VGMQTWYAL 334 >gi|323357749|ref|YP_004224145.1| hypothetical protein MTES_1301 [Microbacterium testaceum StLB037] gi|323274120|dbj|BAJ74265.1| uncharacterized protein conserved in bacteria [Microbacterium testaceum StLB037] Length = 252 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 17/72 (23%) Query: 304 KINA-MASTKIEFY-----------SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII- 350 NA +H T + + GC+R+ N Sbjct: 179 PTNAGYGPYAFGLSAFSDVLTSFGGGPGQIGLHGTDDESTIGQS---VSHGCIRMSNADI 235 Query: 351 -DLDVWLLKDTP 361 +L L TP Sbjct: 236 TELARLLPLGTP 247 >gi|311897287|dbj|BAJ29695.1| hypothetical protein KSE_38990 [Kitasatospora setae KM-6054] Length = 605 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 6/83 (7%) Query: 86 QDILSRGGWPELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Q G P P R L V + RL G S + Sbjct: 524 QATAPASGPPRWPGRYLRTQTPMLHGDDVLMWQRRLAARG---WSISADGWYGPDSARVC 580 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 + FQ RHGL G+V +T +A Sbjct: 581 RAFQQRHGLAVDGVVGPATWDAA 603 >gi|240136962|ref|YP_002961431.1| hypothetical protein MexAM1_META1p0192 [Methylobacterium extorquens AM1] gi|240006928|gb|ACS38154.1| conserved hypothetical protein precursor, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 292 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 39/180 (21%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +R + ++V+ A L V R V VG+ + + +N Sbjct: 135 FLRQEVDFRTNEAPGTIVVDPKAHFLYLVLPNGRARRYGVGVGKQG-FSWSGSATVNSKQ 193 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P+ +I + L ++ L+ Sbjct: 194 AWPDWYPPKEMIARR--PDLAREVDKLQSG----------------------------LG 223 Query: 300 QDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 G N + + + + +++ + +H T EP +SGC+R+ ++ IDL Sbjct: 224 VPGGSRNPLGARAMYLWQNNKDTLFRIHGTLEPHSIGKS---VSSGCIRMINQDAIDLFN 280 >gi|228907493|ref|ZP_04071350.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus thuringiensis IBL 200] gi|228851985|gb|EEM96782.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus thuringiensis IBL 200] Length = 335 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR-HGLDPSGM 156 P +P+ G+ +++ ++ L + + F E VK +Q L G+ Sbjct: 274 PGKPIKQGDRGRNIEAIQRTLKV--------SVDGIFGKETEEKVKEYQRNSSFLSIDGV 325 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 326 VGMQTWYAL 334 >gi|269124313|ref|YP_003297683.1| peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] gi|268309271|gb|ACY95645.1| Peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] Length = 332 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS---GMVD 158 L G++ V+ L+ L+ +G+ P G+ F A E+AV+ FQ +H + G Sbjct: 171 LKRGDTGDRVRDLQSALLKAGERLPEYGVDGDFGAETEAAVRSFQSKHPDEVDRVTGRYG 230 Query: 159 SSTLEAMNV 167 T A+ Sbjct: 231 PQTAAALAR 239 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 11/68 (16%) Query: 106 NSSVSVQ----RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 V+ ++R+R + A+ E + FQ GL G+V T Sbjct: 270 MRGDDVRRWQSQMRKRGWRL-------TVDGAYGPRSEQVCRAFQEEKGLAVDGVVGLVT 322 Query: 162 LEAMNVPV 169 Sbjct: 323 WRQAWEAP 330 >gi|126739742|ref|ZP_01755433.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. SK209-2-6] gi|126718974|gb|EBA15685.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. SK209-2-6] Length = 173 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 298 FRQDPGKINAMASTKIEFY-SRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN--IIDL 352 + Q G N + + + Y + +TY +H T +P + ++GC+R+ N + DL Sbjct: 104 YIQPGGPDNPLGARALYLYQNGVDTYFRIHGTNQPQTIGSS---ASNGCIRMLNDHVTDL 160 Query: 353 DVWLLKDTP 361 + T Sbjct: 161 YERVPLGTV 169 >gi|311893468|dbj|BAJ25876.1| hypothetical protein KSE_00230t [Kitasatospora setae KM-6054] gi|311900994|dbj|BAJ33402.1| hypothetical protein KSE_76510t [Kitasatospora setae KM-6054] Length = 267 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 12/73 (16%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV---------DS 159 V+ ++ RL+ G + ++ A AV+ FQ HGL P+G+V + Sbjct: 58 EEVKEIQRRLVAHGY---PVTVDGSYGARTLYAVQDFQRDHGLAPTGLVHDFAPTGFDTN 114 Query: 160 STLEAMNVPVDLR 172 +T A+ P + Sbjct: 115 TTFFALLAPPAKK 127 >gi|261855752|ref|YP_003263035.1| ErfK/YbiS/YcfS/YnhG family protein [Halothiobacillus neapolitanus c2] gi|261836221|gb|ACX95988.1| ErfK/YbiS/YcfS/YnhG family protein [Halothiobacillus neapolitanus c2] Length = 220 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TPE L R E+ GC+R+ N +I+L + T Sbjct: 171 SHARYIYIHGTPEEGLIG---RPESHGCIRMNNTQVIELFNQVPVGT 214 >gi|23006269|ref|ZP_00048665.1| COG1376: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 248 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 39/191 (20%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ +R + ++V+ A L V R V VG+ + Sbjct: 80 AAIPYKKFNQTYLRQEVDFRTTEPPGTIVVDPKAHFLYFVLPNGRARRYGVGVGKQG-FS 138 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + IN P W P+ +I + L L+ Sbjct: 139 WSGTATINSKQAWPDWYPPKEMIARR--PDLASQVDKLQSG------------------- 177 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + + + +++ + +H T EP +SGC+R Sbjct: 178 ---------LGVPGGTRNPLGARAMYLWQNNKDTLFRIHGTLEPQSIGKS---VSSGCIR 225 Query: 346 V--RNIIDLDV 354 + ++ IDL Sbjct: 226 MINQDAIDLFN 236 >gi|256044792|ref|ZP_05447696.1| hypothetical protein Bmelb1R_09884 [Brucella melitensis bv. 1 str. Rev.1] Length = 230 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 69/211 (32%), Gaps = 18/211 (8%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 A V + ++ + N+ ++ K A + N + ++ Sbjct: 23 FVASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAART----NNTAKANKYSIDP 78 Query: 222 -GRVDRQTPILHSRINRIMFNPYW----VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 R T + ++ V + ++ +A+ +Q ++ I E Sbjct: 79 KFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKRE 138 Query: 277 KGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILF 332 + + E ++ + F D G N + S + + N +H T +P Sbjct: 139 WPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTI 198 Query: 333 NNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + ++GC R+ +++DL + T Sbjct: 199 GSS---ASNGCFRMINEDVMDLYDRVTLGTE 226 >gi|170288938|ref|YP_001739176.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga sp. RQ2] gi|170176441|gb|ACB09493.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga sp. RQ2] Length = 382 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 53/160 (33%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + ++VN+ ++ L +G + V +GR D P YW Sbjct: 246 FRENPVTIVVNLFSSKLALYYDGVLLKVYPVALGRSDTTPP-----------GRYW---- 290 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I++K++ L G+ + +N + Sbjct: 291 -ILRKEIDPAL---------------YWFGEYISPRT------------------PLNGL 316 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + ++ + +H T +P + GC+R+ N Sbjct: 317 GTRYLQLSNP-TYAIHGTSKPWEIGKR---ISHGCIRMFN 352 >gi|330685052|gb|EGG96722.1| peptidase, S41 family [Staphylococcus epidermidis VCU121] Length = 493 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + LG+++ V+ ++ L G ++ S FD +ESA+K FQ + L +G D Sbjct: 406 DKTYKLGDNNKHVKTMKIGLTALGFKVDNESKS--FDTSLESAIKAFQKDNDLTINGEFD 463 Query: 159 SST 161 T Sbjct: 464 KET 466 >gi|228983950|ref|ZP_04144140.1| hypothetical protein bthur0001_6630 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775770|gb|EEM24146.1| hypothetical protein bthur0001_6630 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 253 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 263 PQYLKDNNIH----MIDEKGKEVFVEEVD--WNSPEPPNFIFRQDPG--KINAMASTKIE 314 + ++ N + + + E + + ++ G N + + + Sbjct: 35 LSFFENGNYTKTFSVTTGRDRTPTPEGNFCIITKFKNKEYHRKKIAGGAPNNPLGTRWLG 94 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +N +H T + ++GC+R+ + Sbjct: 95 L-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|311068639|ref|YP_003973562.1| carboxy-terminal processing protease [Bacillus atrophaeus 1942] gi|310869156|gb|ADP32631.1| carboxy-terminal processing protease [Bacillus atrophaeus 1942] Length = 466 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 14/113 (12%) Query: 77 QTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 Q + A+ Y + P L + G+S +V+ ++ L G ++ +D Sbjct: 360 QVKAALPDYAKL------PYLDADKTYKSGDSGNNVKVAQQMLKALGY---KVNVNSTYD 410 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSST----LEAMNVPVDLRIRQLQVNLMRIK 184 E+ VK FQ + L +G++ T + + + Q++ + +K Sbjct: 411 KAFETVVKQFQAKEKLKETGVLTGDTTTKLMTELQGKLSDNDTQMKQAIETLK 463 >gi|291484557|dbj|BAI85632.1| carboxy-terminal processing protease [Bacillus subtilis subsp. natto BEST195] Length = 466 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G++ +V+ ++ L G ++ +D S VK FQ + L +G++ Sbjct: 376 ADKTYKSGDTGTNVKVAQKMLKALGY---KVNVNSTYDQDFVSVVKQFQKKEELKETGIL 432 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMR 182 T + + + ++ + + Sbjct: 433 TGDTTTKLMIELQKKLSDNDTQMEK 457 >gi|153954544|ref|YP_001395309.1| Phage-related amidase [Clostridium kluyveri DSM 555] gi|146347402|gb|EDK33938.1| Predicted Phage-related amidase [Clostridium kluyveri DSM 555] Length = 279 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V L+++L + G L + +D AV Q R G++ T Sbjct: 213 IAKGHKSHIVLWLQQKLEMWGYLKKGSYTDMIYDEPTFQAVTELQKRWERPTDGVLRLET 272 Query: 162 LEAM 165 Sbjct: 273 WSVF 276 >gi|126698130|ref|YP_001087027.1| putative spore peptidoglycan hydrolase [Clostridium difficile 630] gi|255099657|ref|ZP_05328634.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-63q42] gi|255305541|ref|ZP_05349713.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile ATCC 43255] gi|115249567|emb|CAJ67384.1| Spore cortex-lytic enzyme pre-pro-form [Clostridium difficile] Length = 423 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGL--SVAFDAYVESAV 142 + + G P L +G+S V+ ++ +L IS + + E+AV Sbjct: 324 RAPIVSGVPVSFPGTTLQVGSSGQYVRTIQNQLNAISNSYPAVPKVIEDGIYGTDTENAV 383 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 K+FQ GL SG+VD T ++ Sbjct: 384 KIFQGIFGLPQSGVVDFKTWYEISR 408 >gi|15895682|ref|NP_349031.1| peptidoglycan-binding domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15025432|gb|AAK80371.1|AE007742_5 Uncharacterized protein, ErfK family; contains peptidoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325509832|gb|ADZ21468.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018] Length = 235 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 13/83 (15%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + + + G+ + F +H T P Sbjct: 72 AGGKPSTPSPIGTWTIVGKDTW-----GEG--FGGRWMGFNVPWGKYGIHGTIFPDSIGG 124 Query: 335 VVRFETSGCVRVRN--IIDLDVW 355 + GC+R+RN + +L Sbjct: 125 NT---SHGCIRMRNDDVRELYKI 144 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + G+ V +++ L G S + ++ + FQ + L S ++ Sbjct: 166 RSIKPGDRGSDVYEVQKILREKGYY--SGTPDGIYGEGMKYCIHKFQKDNNLYISDIITR 223 Query: 160 STLEAMNVPVDL 171 E + V + Sbjct: 224 KFYEKLGVDLTE 235 >gi|218681016|ref|ZP_03528913.1| hypothetical protein RetlC8_20073 [Rhizobium etli CIAT 894] Length = 268 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I ++Q +R + + V+V+ A L VE G +R V +GR Sbjct: 104 PAIPISRVQPQFLRQEVDYQTTERPGTVIVDTKAHFLYFVEAGGKAMRYGVGLGREG-YA 162 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + + + Sbjct: 163 WSGRGVIQWKQKWPRWTPPVEMVSRQ----------------------------PDVRAF 194 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ +PG N + + + ++ Y +H TP+ +SGCVR Sbjct: 195 SAENGGM-----NPGLQNPVGARAMYIFKDGQDTLYRIHGTPDWQSIGK---ATSSGCVR 246 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++++DL L Sbjct: 247 MLNQDVVDLYDRLPAKAE 264 >gi|164687688|ref|ZP_02211716.1| hypothetical protein CLOBAR_01330 [Clostridium bartlettii DSM 16795] gi|164603462|gb|EDQ96927.1| hypothetical protein CLOBAR_01330 [Clostridium bartlettii DSM 16795] Length = 424 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 99 IRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L +G+ V+ ++ +L IS P + AV+ FQ GL +G Sbjct: 338 GTTLEIGSEGTPVRTIQNQLNAISNSYPAIPKVAEDGIYGPSTAEAVRTFQKIFGLPQTG 397 Query: 156 MVDSSTLEAMNV 167 +VD T ++ Sbjct: 398 VVDFKTWYEISR 409 >gi|146276712|ref|YP_001166871.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] gi|145554953|gb|ABP69566.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] Length = 260 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 17/203 (8%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A P + ++ + G R + P E +V + Sbjct: 23 APEPPPSRSAAPMGISPQIAAVYGPVQDGERIIPAVPPQYLAEHKIRREVDYWTDQ---- 78 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF- 282 P ++ Y V P + +A+ R+ + D I + E + + Sbjct: 79 -----PPGTIVVDPYARYLYLVQPGQRAIRYAVAVGREGRGFSGDAVIPIKREWPRWIPT 133 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFE 339 ++ + + + D G N + + + + ++ Y +H T + Sbjct: 134 KSMIEEDPEQYGPYRDGMDGGLSNPLGARALYLHRNGKDTYYRIHGTNDVSSIGQ---AT 190 Query: 340 TSGCVRVRNIIDLDVWLLKDTPT 362 ++GC+R+ N D+ + P Sbjct: 191 SAGCIRLWN-QDILDLYARVQPG 212 >gi|254558970|ref|YP_003066065.1| hypothetical protein METDI0342 [Methylobacterium extorquens DM4] gi|254266248|emb|CAX22006.1| conserved hypothetical protein precursor, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 283 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 44/184 (23%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 R L+ +R K ++V+ L V G +R V VG+ + + Sbjct: 62 RDLKARNVRQVVDYPTKEPPGTLVVDPYRRFLYLVMEGGKAMRYGVGVGKAGFE-FTGEA 120 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + R P W +I++D R Sbjct: 121 TVARKASWPRWTPTPDMIRRDPARNGRWAGG----------------------------- 151 Query: 294 PNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RN 348 G N + + + ++ Y +H T EP +SGC+R+ ++ Sbjct: 152 ------MPGGDRNPLGARALYLFKDGKDTLYRIHGTTEPWSIGE---AVSSGCIRMLNQD 202 Query: 349 IIDL 352 +IDL Sbjct: 203 VIDL 206 >gi|98647786|gb|ABF58910.1| matrix metalloprotease 1 [Nicotiana tabacum] Length = 365 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + ++++ G + + FD +ESA+K +Q L+ +G++D+ T++ Sbjct: 53 GQKVDGLAKIKKYFYNFGYIPSLSNFTDDFDDALESALKTYQQNFNLNTTGVLDAPTIQH 112 Query: 165 MNVP 168 + P Sbjct: 113 LIRP 116 >gi|114762230|ref|ZP_01441698.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Pelagibaca bermudensis HTCC2601] gi|114545254|gb|EAU48257.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. HTCC2601] Length = 195 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 46/172 (26%) Query: 179 NLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 + + + +LV+I + +L + V V + T +R+ Sbjct: 49 SFRTLDWQPYFSNLNNGAILVDISSRALHYWQESGVYHLYPCSVPLTEDLTRRGRTRVTL 108 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 P W S+ +++P++ Sbjct: 109 KDPEPDWRPTPSMK--------KRNPEW-------------------------------P 129 Query: 298 FRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + Y +H T + R ++GC+ + N Sbjct: 130 DYVGPGPDNPLGTRAMHLS--WTYYRIHGTHDTRKIG---RRSSNGCIGLYN 176 >gi|294852476|ref|ZP_06793149.1| carnitine operon oxidoreductase CaiA [Brucella sp. NVSL 07-0026] gi|294821065|gb|EFG38064.1| carnitine operon oxidoreductase CaiA [Brucella sp. NVSL 07-0026] Length = 255 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 71/208 (34%), Gaps = 18/208 (8%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV-GR 223 V + ++ + N+ ++ K A + N + ++ R Sbjct: 51 SPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAART----NNTAKANKYSIDPKFR 106 Query: 224 VDRQTPILHSRINRIMFNPY---WVIPRSIIQKDM-MALLRQDPQYLKDNNIHMIDEKGK 279 T + ++ +++ S+ + +A+ +Q ++ I E + Sbjct: 107 PQDVTFTGYKPGTIVIDPKKRFLYLVETSMTARRYGIAVGKQGLEFQGKATISAKREWPR 166 Query: 280 EVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNN-TYMHDTPEPILFNNV 335 + E ++ + F D G N + S + +++ +H T +P + Sbjct: 167 WIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSS 226 Query: 336 VRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++GC R+ +++DL + T Sbjct: 227 ---ASNGCFRMINEDVMDLYDRVTLGTE 251 >gi|117621302|ref|YP_858233.1| general secretion pathway protein A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562709|gb|ABK39657.1| general secretion pathway protein A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 525 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 9/168 (5%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIP-----IISKETIAQTEKAIAFYQDILSRGGW 94 + + + D + + P +I ++ + ++ Y W Sbjct: 354 LQALQYPALVSLTDETGGTYYATLVNLGPDKANLLIGNQSWQVDRQWLSDYWGGSYTLLW 413 Query: 95 PELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +GN++ VQ L L + L FDA +++ ++ FQ GL+ Sbjct: 414 RMPKGGVTLIGNNAGPSQVQWLDNALSRA--LQQPDRKVRRFDAELKTKLQQFQRAQGLN 471 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 P G+ S+TL +NV + +L+ R K +N Sbjct: 472 PDGIAGSNTLLRLNVMAGEPMPKLEDPAQRASKPARLDPAEDDDAINT 519 >gi|294500843|ref|YP_003564543.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium QM B1551] gi|294350780|gb|ADE71109.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium QM B1551] Length = 344 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--P 153 LP L G+S +V++L+ L + + + AV+ FQ+ + L Sbjct: 268 PLPNGILKQGDSGEAVKQLQRALNAVNF--KVGSVDGIYGVQTKDAVRRFQLVY-LPYDV 324 Query: 154 SGMVDSST 161 G+ T Sbjct: 325 DGIYGPQT 332 >gi|254454175|ref|ZP_05067612.1| ErfK/YbiS/YcfS/YnhG family protein [Octadecabacter antarcticus 238] gi|198268581|gb|EDY92851.1| ErfK/YbiS/YcfS/YnhG family protein [Octadecabacter antarcticus 238] Length = 178 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 9/148 (6%) Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + R+DR + F YWV+ + + + + R D I + E Sbjct: 29 PRIVRIDRDYATGEIHVEPNNFKLYWVLGPGLAMEYSVGIGRAGLYESGDFMIQVKKEWP 88 Query: 279 KEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNN 334 ++ + F + G N + + + F +TY +H T P + Sbjct: 89 SWTPTPAMIERSPQSYAQFADGMEGGINNPLGARALYLFSGDRDTYLRIHGTNAPNTIGS 148 Query: 335 VVRFETSGCVRVRN--IIDLDVWLLKDT 360 ++GCVR+ N I DL + +T Sbjct: 149 ---AVSNGCVRLVNSHISDLYNRVPLNT 173 >gi|218847877|ref|YP_002454610.1| N-acetylmuramoyl-L-alanine amidase CwlA [Bacillus cereus G9842] gi|218546379|gb|ACK98771.1| N-acetylmuramoyl-L-alanine amidase CwlA [Bacillus cereus G9842] Length = 364 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGL 151 LP L G+S SV+ +++ L P+ G + +AV FQ + Sbjct: 285 TLPDGVLKKGSSGESVRAVQKALTSVYFYPDKSAPNYGCDGFYGDKTVNAVYRFQSVYCS 344 Query: 152 DPSGMVDSSTLEAMNVPVDL 171 + G+ T + ++ Sbjct: 345 NADGIYGPETKRKLIEQINK 364 >gi|126654267|ref|ZP_01726053.1| hypothetical protein BB14905_17570 [Bacillus sp. B14905] gi|126589278|gb|EAZ83437.1| hypothetical protein BB14905_17570 [Bacillus sp. B14905] Length = 504 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S SV+ E L + G + FD AV+ Q + L+ +G++ +T Sbjct: 409 MKAGMQSDSVKAAEEMLQVLGY--EPGEIDGLFDDNTAHAVEQLQAANNLEETGVLTGNT 466 Query: 162 LEAM 165 A+ Sbjct: 467 TYAL 470 >gi|331090845|ref|ZP_08339691.1| hypothetical protein HMPREF9477_00334 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399704|gb|EGG79366.1| hypothetical protein HMPREF9477_00334 [Lachnospiraceae bacterium 2_1_46FAA] Length = 540 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 58/218 (26%), Gaps = 62/218 (28%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 ++ G T + + R + + + + G Y V++ + +N Sbjct: 373 INQDGEYKKLTEDILAGNSVKREPEYKRKAVSHEG---NDFGNTYAEVDLTTQHMWFFQN 429 Query: 211 GKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 GK+ + S ++ G+ TP + ++++ ++ Sbjct: 430 GKLMMESPIVTGKPSTGHATPQGTYTVTY-------TQKGAVLRGKILP----------- 471 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 GK + VD+ HD Sbjct: 472 --------NGKREYETPVDFW-------------------------MPFNGGIGFHDATW 498 Query: 329 PILFNNVVRFE---TSGCVRV--RNIIDLDVWLLKDTP 361 F R+ + GCV + L +L TP Sbjct: 499 QSSFG-GNRYLTHGSHGCVNMPYDKAQQLFGYLKAGTP 535 >gi|254414414|ref|ZP_05028180.1| D-alanyl-D-alanine carboxypeptidase family [Microcoleus chthonoplastes PCC 7420] gi|196178644|gb|EDX73642.1| D-alanyl-D-alanine carboxypeptidase family [Microcoleus chthonoplastes PCC 7420] Length = 881 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 86 QDILSRGG--WPELPIRPLH-LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + I+ G W I L + V+++++ L D G+ F ++AV Sbjct: 282 RSIIGGFGEVWQGFEIIKLTSPYMHGIDVRKIQQALA---DAKIDVGVDGVFGPGTQAAV 338 Query: 143 KLFQMRHGLDPSGMVDSSTL 162 KLFQ L G+V +TL Sbjct: 339 KLFQKARNLITDGVVGPATL 358 >gi|77462770|ref|YP_352274.1| hypothetical protein RSP_2218 [Rhodobacter sphaeroides 2.4.1] gi|126461662|ref|YP_001042776.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] gi|77387188|gb|ABA78373.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] gi|126103326|gb|ABN76004.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] Length = 180 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 41/158 (25%), Gaps = 44/158 (27%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L E+G V R + + +RI R + P W ++ +D Sbjct: 61 LFWSEDGTVHRRYPAAMPDTRAFPRLGGTRIIRKVEGPTWRPTPAMRARD---------- 110 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 P + PG N + + ++ +H Sbjct: 111 -----------------------------PELPWSLPPGPGNPFGTHALHLEWQH-YRIH 140 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 T +P V GC+ + N + T Sbjct: 141 GTHDPSTIGGVTA---HGCIGLSNAH-IAELFAHTTVG 174 >gi|209551558|ref|YP_002283475.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537314|gb|ACI57249.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T +A + I +++ R + ++VN L + +R + Sbjct: 52 TKDAGYSLPAIPIDRVKPQFRRQVVSYQTTERPGTIIVNTRERFLYYILANGKAMRYGIG 111 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ + + P W P+ + + + + ++ D G Sbjct: 112 VGKQGFA-WAGTAYVAWKQEWPTWHPPKEMAVRR--PDVAK----------YVEDGMG-- 156 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVV 336 PG N + + + ++ + +H TPE Sbjct: 157 ---------------------PGLSNPLGARAMYLFNEDGKDTLFRLHGTPEWASIGT-- 193 Query: 337 RFETSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 194 -AASSGCIRLMNQDVIDL 210 >gi|33599771|ref|NP_887331.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33567368|emb|CAE31281.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 459 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 D+ R W G SVQ L++RL +G L + A A+ FQ Sbjct: 367 DLAWRAPWRP---EDFASGGPHPSVQALQQRLGAAGLLATRA--DGIYGAQTRQALASFQ 421 Query: 147 MRHGLDPSG 155 H L +G Sbjct: 422 RDHALPATG 430 >gi|163735625|ref|ZP_02143056.1| Twin-arginine translocation pathway signal [Roseobacter litoralis Och 149] gi|161391053|gb|EDQ15391.1| Twin-arginine translocation pathway signal [Roseobacter litoralis Och 149] Length = 209 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 19/177 (10%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L Q+ V NI + S + ++ L+ I+ +D + S + Sbjct: 46 LRAQEQEPSAVRRNISSFSADPWQDHFDNLQHGAILCDIDSRAVQYWSEDESVYKLYPSS 105 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S + L + K + P + PG Sbjct: 106 VPAS--------------EELTRRGYTKVIRKVEGPSWRPTPSMKERNPEWPDYWPPGPD 151 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 N + + + + +H T + R ++GC+ + N + Sbjct: 152 NPLGTHALYLSWQY-YRVHGTGDTRKIG---RQSSNGCIGLYN-EHIAELFALAEVG 203 >gi|86747446|ref|YP_483942.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86570474|gb|ABD05031.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 175 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 45/163 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++V L V +R V VG+ + + ++I+ NP W Sbjct: 37 FRGDYSPGTIVVKTHERKLYLVVEPGQAVRYPVGVGKPGK-SWQGVTKIDGKYRNPAWAP 95 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KI 305 P + + + P G Sbjct: 96 PADVKR---------------------------------------DNPAIPDVIAGGTPE 116 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N M + +H T P F + GC+R+ N Sbjct: 117 NPMGVAAMTLAGGE-YAIHGTNRPNSIG---GFVSYGCIRMLN 155 >gi|75677198|ref|YP_319619.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] gi|74422068|gb|ABA06267.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] Length = 187 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 45/167 (26%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + V++ L V G LR + VGR D RI+ Sbjct: 45 RQLVYFQSRYAPGTVVIRTGERRLYLVLPGGQALRYGIGVGR-DGFRWSGVHRISAKKEW 103 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 104 PSWTPPAQMLRRR---------------------------------------PDLPRFMR 124 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP +SGC R+ N Sbjct: 125 GGLENPLGARAMYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTN 167 >gi|328882102|emb|CCA55341.1| hypothetical protein SVEN_2054 [Streptomyces venezuelae ATCC 10712] Length = 333 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 4/72 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L LG+S V+ L+ RL ++ FD V+ AV +Q + G+ Sbjct: 260 AVTLSLGSSGPEVRELQRRLEAV--WAYHGRINGRFDEEVQEAVARYQSWRYVQDDPEGV 317 Query: 157 VDSSTLEAMNVP 168 +T + Sbjct: 318 YGPTTRRLLEEN 329 >gi|326332362|ref|ZP_08198641.1| LigA [Nocardioidaceae bacterium Broad-1] gi|325949851|gb|EGD41912.1| LigA [Nocardioidaceae bacterium Broad-1] Length = 388 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 5/92 (5%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R L G V++L + L G + AV +Q G++ Sbjct: 135 GTVPAWRDLAPGVEGKDVKQLEKNLWALGYRGFDVDEDYTY--ATADAVAEWQEDLGVEE 192 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 +G + T + + P +RI L +L Sbjct: 193 TGKI--RTGDVVVQPAAVRIGSLSASLGDQAG 222 >gi|150395799|ref|YP_001326266.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150027314|gb|ABR59431.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 227 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + RQ+ R + ++V+ L ++ +R V +GR Sbjct: 63 PAVPFRQIDPRFYRQEVSDPFGEAPGTIVVDTADRYLYLIQPRGRAMRYGVGLGREGFA- 121 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P +M+A +Y DN Sbjct: 122 WSGRGVIQWKQKWPKWTPP-----NEMVARQPVLAKYSADNGGM---------------- 160 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVR 345 PG N + + + F + + +H +PE +SGCVR Sbjct: 161 ------------PPGLDNPLGARALYIFQNGQDTLYRVHGSPEWQSIGK---AVSSGCVR 205 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + +P Sbjct: 206 LINQDVIDLYDRVRNKSP 223 >gi|163938674|ref|YP_001643558.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus weihenstephanensis KBAB4] gi|229010181|ref|ZP_04167391.1| hypothetical protein bmyco0001_6460 [Bacillus mycoides DSM 2048] gi|229131696|ref|ZP_04260573.1| hypothetical protein bcere0014_6490 [Bacillus cereus BDRD-ST196] gi|163860871|gb|ABY41930.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus weihenstephanensis KBAB4] gi|228651750|gb|EEL07710.1| hypothetical protein bcere0014_6490 [Bacillus cereus BDRD-ST196] gi|228751031|gb|EEM00847.1| hypothetical protein bmyco0001_6460 [Bacillus mycoides DSM 2048] Length = 253 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + + +H T + ++GC+R+ Sbjct: 67 TKYKNKEYHRKKIAGGAPNNPLGTRWLGLDKKE-YAIHGTNREWTIGSRE---SNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|47564689|ref|ZP_00235733.1| protein erfK/srfK precursor [Bacillus cereus G9241] gi|47558062|gb|EAL16386.1| protein erfK/srfK precursor [Bacillus cereus G9241] Length = 253 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 40/156 (25%), Gaps = 54/156 (34%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +LVN+ L ENG V GR TP + I Sbjct: 23 DHLILVNLTTNQLSFFENGNYTKTFPVTTGRDRTPTPEGNFCIITKF------------- 69 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ +Y + + N + + Sbjct: 70 --------KNKEY---HRKKIAGGA--------------------------PNNPLGTRW 92 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +N +H T + ++GC+R+ + Sbjct: 93 LGL-DKNEYAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|221638634|ref|YP_002524896.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides KD131] gi|332557655|ref|ZP_08411977.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides WS8N] gi|221159415|gb|ACM00395.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides KD131] gi|332275367|gb|EGJ20682.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides WS8N] Length = 180 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 41/158 (25%), Gaps = 44/158 (27%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L E+G V R + + +RI R + P W ++ +D Sbjct: 61 LFWSEDGTVHRRYPAAMPDTRAFPRLGGTRIIRKVEGPTWRPTPAMRARD---------- 110 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 P + PG N + + ++ +H Sbjct: 111 -----------------------------PELPWSLPPGPGNPFGTHALHLEWQH-YRIH 140 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 T +P V GC+ + N + T Sbjct: 141 GTHDPSTIGGVTA---HGCIGLSNAH-IAELFAHTTVG 174 >gi|188582769|ref|YP_001926214.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179346267|gb|ACB81679.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 199 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 46/182 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R K ++++ L V G +R V VGR + I Sbjct: 57 RETVAYAGKEKPGTIVISTSQRRLYYVLGGGEAIRYGVGVGRRG-FSWSGTKTITGKKEW 115 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++ + P+ Sbjct: 116 PAWRPPSQMLARR---------------------------------------PDLPRYMA 136 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 G+ N + + + S +H + EP +SGC+R+ N ++DL + Sbjct: 137 GGQDNPLGARAMYLGSS-LYRIHGSNEPETMGA---AVSSGCIRMTNKDVVDLYDRVRVG 192 Query: 360 TP 361 T Sbjct: 193 TK 194 >gi|229541523|ref|ZP_04430583.1| carboxyl-terminal protease [Bacillus coagulans 36D1] gi|229325943|gb|EEN91618.1| carboxyl-terminal protease [Bacillus coagulans 36D1] Length = 478 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L ++ ++ ++ L G FD E+AVK FQ GL +G ++ T Sbjct: 391 LKKDMNNTQIKTAQQMLKSLGF--SPGREDGYFDIQTENAVKAFQFDKGLPVTGSINQKT 448 Query: 162 LEAMNVP 168 + M Sbjct: 449 ADEMEKS 455 >gi|27376135|ref|NP_767664.1| hypothetical protein bll1024 [Bradyrhizobium japonicum USDA 110] gi|27349274|dbj|BAC46289.1| bll1024 [Bradyrhizobium japonicum USDA 110] Length = 197 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 53/204 (25%), Gaps = 48/204 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 V QL+ + ++++ L V+ G +R + VGR Q Sbjct: 38 VADDAYQLEPEWQKQVVYFRTTETPGTIIISTAERHLYLVQPGGRAIRYGIGVGRDGFQ- 96 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P +IQ+ Sbjct: 97 WQGLVNITNKKEWPDWTPPPEMIQRQ---------------------------------- 122 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 P G N + + + Y +H T P +SGC R+ Sbjct: 123 -----PYLPRFMAGGPGNPLGARAMYL--GTTVYRIHGTNRPDTIGTK---VSSGCFRLV 172 Query: 348 N--IIDLDVWLLKDTPTWSRYHIE 369 N + DL + T R E Sbjct: 173 NNDVADLYDRVPVGTKVVIRQKPE 196 >gi|260548891|ref|ZP_05823113.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. RUH2624] gi|260408059|gb|EEX01530.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. RUH2624] Length = 167 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GC+R+RN II+L + +D + Sbjct: 119 IYIHGTPDKEPMGVPM---SHGCIRMRNEEIIELFDLVSEDALVYLSEQ 164 >gi|260460966|ref|ZP_05809215.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259033000|gb|EEW34262.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 256 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 45/171 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V++ L V+ G +R V +G+ D + I P W P +IQ+ Sbjct: 122 IVVHLKERMLYLVQPGGDAIRYGVGIGK-DGFRWSGRANIQYGREWPTWTPPPEMIQRK- 179 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 E V W Q G N + + + Sbjct: 180 ---------------------------PELVKWQGG--------QPGGLTNPLGARALYI 204 Query: 316 YSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 Y +H +PE + +SGCVR+ ++IIDL + K P Sbjct: 205 YQDGKDTGYRIHGSPEWWSIGQAM---SSGCVRLINQDIIDLYSRVSKKNP 252 >gi|254476194|ref|ZP_05089580.1| Putative peptidoglycan binding domain protein [Ruegeria sp. R11] gi|214030437|gb|EEB71272.1| Putative peptidoglycan binding domain protein [Ruegeria sp. R11] Length = 424 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 2/94 (2%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + ++ +L G L + S DA A+ FQ L PSG VD ++ + Sbjct: 279 EDIAEVQTQLAALGYL--NAPASGTLDAATRRAISRFQADQNLVPSGEVDFDLIDRLGEK 336 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 R + G R LV P Sbjct: 337 TATRQETAPAGAKPAVAPAKTPSGTRRALVPKPQ 370 >gi|169632527|ref|YP_001706263.1| hypothetical protein ABSDF0653 [Acinetobacter baumannii SDF] gi|184159373|ref|YP_001847712.1| hypothetical protein ACICU_03053 [Acinetobacter baumannii ACICU] gi|239501781|ref|ZP_04661091.1| hypothetical protein AbauAB_05656 [Acinetobacter baumannii AB900] gi|260557219|ref|ZP_05829435.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter baumannii ATCC 19606] gi|332876213|ref|ZP_08443988.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6014059] gi|169151319|emb|CAP00030.1| conserved hypothetical protein [Acinetobacter baumannii] gi|183210967|gb|ACC58365.1| hypothetical protein ACICU_03053 [Acinetobacter baumannii ACICU] gi|193078252|gb|ABO13212.2| hypothetical protein A1S_2806 [Acinetobacter baumannii ATCC 17978] gi|260409325|gb|EEX02627.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter baumannii ATCC 19606] gi|322509285|gb|ADX04739.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323519313|gb|ADX93694.1| hypothetical protein ABTW07_3274 [Acinetobacter baumannii TCDC-AB0715] gi|332735485|gb|EGJ66537.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6014059] Length = 167 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GC+R+RN II+L + +D + Sbjct: 119 IYIHGTPDKEPMGVPM---SHGCIRMRNEEIIELFDLVSEDALVYLSEQ 164 >gi|169794854|ref|YP_001712647.1| hypothetical protein ABAYE0680 [Acinetobacter baumannii AYE] gi|213157819|ref|YP_002320617.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter baumannii AB0057] gi|215482401|ref|YP_002324583.1| hypothetical protein ABBFA_000659 [Acinetobacter baumannii AB307-0294] gi|301348125|ref|ZP_07228866.1| hypothetical protein AbauAB0_17806 [Acinetobacter baumannii AB056] gi|301513350|ref|ZP_07238587.1| hypothetical protein AbauAB05_17256 [Acinetobacter baumannii AB058] gi|301596943|ref|ZP_07241951.1| hypothetical protein AbauAB059_14032 [Acinetobacter baumannii AB059] gi|332852308|ref|ZP_08434113.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013150] gi|332870531|ref|ZP_08439295.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013113] gi|169147781|emb|CAM85644.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|213056979|gb|ACJ41881.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter baumannii AB0057] gi|213986475|gb|ACJ56774.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294] gi|332729438|gb|EGJ60778.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013150] gi|332732268|gb|EGJ63536.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013113] Length = 167 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GC+R+RN II+L + +D + Sbjct: 119 IYIHGTPDKEPMGVPM---SHGCIRMRNEEIIELFDLVSEDALVYLSEQ 164 >gi|126642830|ref|YP_001085814.1| hypothetical protein A1S_2806 [Acinetobacter baumannii ATCC 17978] Length = 138 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GC+R+RN II+L + +D + Sbjct: 90 IYIHGTPDKEPMGVPM---SHGCIRMRNEEIIELFDLVSEDALVYLSEQ 135 >gi|312116053|ref|YP_004013649.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311221182|gb|ADP72550.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 251 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 48/201 (23%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 Q + ++V+ + L V GK + VGR D T RI RI P W Sbjct: 79 IYFNQNEEVGSIIVDTQSRKLYFVLPGKRAYEYPISVGR-DGFTWSGTERITRIAEWPSW 137 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P+ + ++ P G Sbjct: 138 TPPQEMHKRQ---------------------------------------PGLPITVSGGL 158 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + + Y +H T +SGC R++N + V L Sbjct: 159 RNPQGARALYLGN--TVYRIHGTNNERTVGQAN---SSGCFRLKN--EHVVHLASIAKVG 211 Query: 364 SRYHIEEVVKTRKTTPVKLAT 384 ++ + + + L++ Sbjct: 212 TKVKVLQAYTGGVSQSAPLSS 232 >gi|94499507|ref|ZP_01306044.1| hypothetical protein RED65_00700 [Oceanobacter sp. RED65] gi|94428261|gb|EAT13234.1| hypothetical protein RED65_00700 [Oceanobacter sp. RED65] Length = 160 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 8/53 (15%) Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVW 355 N + + Y+H TP+ + GC+R+RN +I+L W Sbjct: 102 KNRLGNVDTM---ARYIYIHGTPDTEAMGQ---ALSHGCIRMRNDDVIELFDW 148 >gi|305673895|ref|YP_003865567.1| putative phage N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii str. W23] gi|305412139|gb|ADM37258.1| putative phage N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 207 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%) Query: 109 VSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 +V++++ L K G+ + AV+ FQ+ +GL G+ T Sbjct: 142 DAVEQIQTALAALHFYPDKKAKNFGIDSYYGPQTADAVRRFQLMYGLSADGIYGPKTKAK 201 Query: 165 MNV 167 + Sbjct: 202 IEA 204 >gi|302333033|gb|ADL23226.1| serine protease [Staphylococcus aureus subsp. aureus JKD6159] Length = 496 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G ++ FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGYKVDNET--TQFDQALENQVKAFQQTNKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|86748292|ref|YP_484788.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86571320|gb|ABD05877.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 224 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 296 FIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--II 350 G N + + + +R+ + +H T +P +SGC+R+ N +I Sbjct: 131 LPASVPGGVDNPLGARALYLYQGNRDTLFRIHGTNQPEYIGAS---ISSGCIRMTNEDVI 187 Query: 351 DLDVWLLKDT 360 DL + T Sbjct: 188 DLYTRVKNGT 197 >gi|304405010|ref|ZP_07386670.1| carboxyl-terminal protease [Paenibacillus curdlanolyticus YK9] gi|304345889|gb|EFM11723.1| carboxyl-terminal protease [Paenibacillus curdlanolyticus YK9] Length = 478 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + Y ++ + LP L G+ +V+ L++ L G FD Sbjct: 366 NVKVELPAYTELAA------LPTDSVLKKGDYGDAVKTLQQMLQALGY-SIKGATEGVFD 418 Query: 136 AYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNVPVDLRIRQ 175 ++AV+ Q + G V ST + + ++ + Sbjct: 419 GVTDAAVRQLQQVESIQPADGQVRESTTTRIMELLRDKLEK 459 >gi|296447750|ref|ZP_06889665.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296254727|gb|EFH01839.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 260 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 6/91 (6%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 + I K + P+ G N + + + +H Sbjct: 163 FTWTGVKPITRKAQWPDWTPPSEMLARRPDLPRHMAGGPANPLGARALYLGGS-LYRIHG 221 Query: 326 TPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 T EP +SGC+R+ ++IDL Sbjct: 222 TNEPYTIGQN---VSSGCIRMMNEDVIDLYD 249 >gi|229137557|ref|ZP_04266164.1| hypothetical protein bcere0013_6870 [Bacillus cereus BDRD-ST26] gi|228645917|gb|EEL02144.1| hypothetical protein bcere0013_6870 [Bacillus cereus BDRD-ST26] Length = 219 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 33 TKYKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|331084634|ref|ZP_08333722.1| hypothetical protein HMPREF0987_00025 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410728|gb|EGG90150.1| hypothetical protein HMPREF0987_00025 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 128 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++++E L +I+G + + ++VK FQ GL + Sbjct: 44 PGYVLENGSSGNKVRQMQEELNVIAGAYPAIPKITVDGIYGPATAASVKKFQSVFGLPAT 103 Query: 155 GMVDSSTL 162 G VD T Sbjct: 104 GTVDYRTW 111 >gi|229171536|ref|ZP_04299116.1| hypothetical protein bcere0006_6610 [Bacillus cereus MM3] gi|228611924|gb|EEK69166.1| hypothetical protein bcere0006_6610 [Bacillus cereus MM3] Length = 254 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 38/156 (24%), Gaps = 54/156 (34%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +LVN+ L ENG V GR TP I Sbjct: 23 DHLILVNLTTNQLSFFENGNYTKTFPVTTGRDRTPTPEGSFCIITKF------------- 69 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ +Y + + N + + Sbjct: 70 --------KNKEY---HRKKIAGGA--------------------------PNNPLGTRW 92 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + +H T + ++GC+R+ + Sbjct: 93 LGLDKKE-YAIHGTNREWTIGSRE---SNGCIRMHD 124 >gi|90420598|ref|ZP_01228505.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335326|gb|EAS49079.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 245 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 8/121 (6%) Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--Y 316 R + D NI K E+ P+ + DPG N + + + Sbjct: 128 GRAGFSWAGDANIRAKRSWPKWFPPAEMIDRKPDLEPYRDGMDPGLTNPLGARALYLYQN 187 Query: 317 SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVK 373 ++ + +H TPE +SGC+R+ ++IIDL + D + E + Sbjct: 188 GKDTLFRLHGTPEWWTIGT---AASSGCIRLMNQDIIDLYERVPMDARVVVKQGKERLAA 244 Query: 374 T 374 Sbjct: 245 R 245 >gi|329922728|ref|ZP_08278280.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] gi|328942070|gb|EGG38353.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] Length = 103 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 304 KINAMASTKIEFYSR------NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 N + + + +H L + ++GC+R+ N WL Sbjct: 36 PRNPLGDRWLGINVKVNGRTSYAYAIHGNNNANLIGK---YVSAGCIRMHNKD--VRWLY 90 Query: 358 KDTPTWSRYHIEE 370 + I++ Sbjct: 91 DKVKMNTPVLIQK 103 >gi|30023067|ref|NP_834698.1| protein erfK/srfK precursor [Bacillus cereus ATCC 14579] gi|229049719|ref|ZP_04194276.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH676] gi|229112475|ref|ZP_04242012.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock1-15] gi|229130287|ref|ZP_04259246.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BDRD-Cer4] gi|229147579|ref|ZP_04275924.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BDRD-ST24] gi|29898627|gb|AAP11899.1| Protein erfK/srfK precursor [Bacillus cereus ATCC 14579] gi|228635869|gb|EEK92354.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BDRD-ST24] gi|228653220|gb|EEL09099.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus BDRD-Cer4] gi|228670855|gb|EEL26162.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock1-15] gi|228722632|gb|EEL74020.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH676] Length = 153 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 35/160 (21%), Gaps = 59/160 (36%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++ ++GK TV G+ TP +I + N + I D Sbjct: 39 KMDYYQDGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD--------- 88 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY- 322 N + + Sbjct: 89 ----------------------------------------PRNPLGDRWLGLNMAGTYGT 108 Query: 323 ---MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 109 TYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFER 143 >gi|49473972|ref|YP_032014.1| hypothetical protein BQ03270 [Bartonella quintana str. Toulouse] gi|49239475|emb|CAF25827.1| hypothetical protein BQ03270 [Bartonella quintana str. Toulouse] Length = 258 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Query: 301 DPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 PG N + + + F + +T +H + E R +SGC+R+ ++IIDL Sbjct: 162 PPGPDNPLGARALYLFRNGKDTLFRIHGSNESWSIG---RAISSGCIRLLNQDIIDLYDR 218 Query: 356 LLKDT 360 + Sbjct: 219 VPNGA 223 >gi|115526343|ref|YP_783254.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisA53] gi|115520290|gb|ABJ08274.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 228 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 296 FIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +R+ + +H T +P +SGC+R+ N Sbjct: 132 LPASVPGGVDNPLGARALYLYQGNRDTLFRIHGTNQPEYIGAS---ISSGCIRMTN 184 >gi|254481176|ref|ZP_05094421.1| Putative peptidoglycan binding domain protein [marine gamma proteobacterium HTCC2148] gi|214038339|gb|EEB79001.1| Putative peptidoglycan binding domain protein [marine gamma proteobacterium HTCC2148] Length = 560 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+SS +V + + L D + F+ ++ V LFQ GL+ G++ T Sbjct: 474 LAEGDSSPAVGEVAQ-LFARLDGQAQALTANRFNEALKQRVMLFQGAQGLEADGVIGVQT 532 Query: 162 L 162 L Sbjct: 533 L 533 >gi|240140080|ref|YP_002964557.1| hypothetical protein MexAM1_META1p3546 [Methylobacterium extorquens AM1] gi|254562503|ref|YP_003069598.1| hypothetical protein METDI4121 [Methylobacterium extorquens DM4] gi|240010054|gb|ACS41280.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein precursor [Methylobacterium extorquens AM1] gi|254269781|emb|CAX25754.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein precursor [Methylobacterium extorquens DM4] Length = 199 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R K ++++ L V G +R V VGR + + Sbjct: 57 RDTVAYAGKEKPGTIVISTSQRRLYYVLGGGEAIRYGVGVGRQG-FSWSGTKTVTGKKEW 115 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++ + P+ Sbjct: 116 PAWRPPAQMLARR---------------------------------------PDLPRYMA 136 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G+ N + + + S +H + EP +SGC+R+ N Sbjct: 137 GGQDNPLGARAMYLGSS-LYRIHGSNEPETMGA---AVSSGCIRMTN 179 >gi|228923763|ref|ZP_04087041.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835892|gb|EEM81255.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 153 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 35/160 (21%), Gaps = 59/160 (36%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++ ++GK TV G+ TP +I + N + I D Sbjct: 39 KMDYYQDGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD--------- 88 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY- 322 N + + Sbjct: 89 ----------------------------------------PRNPLGDRWLGLNMAGTYGT 108 Query: 323 ---MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 109 TYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFER 143 >gi|228938016|ref|ZP_04100637.1| hypothetical protein bthur0008_6870 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970892|ref|ZP_04131529.1| hypothetical protein bthur0003_6770 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977496|ref|ZP_04137888.1| hypothetical protein bthur0002_7100 [Bacillus thuringiensis Bt407] gi|228782140|gb|EEM30326.1| hypothetical protein bthur0002_7100 [Bacillus thuringiensis Bt407] gi|228788701|gb|EEM36643.1| hypothetical protein bthur0003_6770 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821642|gb|EEM67646.1| hypothetical protein bthur0008_6870 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938520|gb|AEA14416.1| protein erfK/srfK precursor [Bacillus thuringiensis serovar chinensis CT-43] Length = 253 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 67 TKFKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|75675235|ref|YP_317656.1| N-acetylmuramoyl-L-alanine amidase [Nitrobacter winogradskyi Nb-255] gi|74420105|gb|ABA04304.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Nitrobacter winogradskyi Nb-255] Length = 283 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 8/96 (8%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P + L G+ V+ L++ L G + FD V FQ Sbjct: 191 GHWIRPAPIVAGEVLKTGSEGDDVRALQQSLARYGY---GIKATGKFDTATMEVVTAFQR 247 Query: 148 RHG-LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 G+ D STL ++ +D Q N +R Sbjct: 248 HFRPAKVDGIADQSTLTTLHALLDSLPAQKASNGIR 283 >gi|75763270|ref|ZP_00743021.1| Hypothetical exported protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895804|ref|YP_002444215.1| hypothetical protein BCG9842_B4524 [Bacillus cereus G9842] gi|228963852|ref|ZP_04124988.1| hypothetical protein bthur0004_7170 [Bacillus thuringiensis serovar sotto str. T04001] gi|74489238|gb|EAO52703.1| Hypothetical exported protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543417|gb|ACK95811.1| conserved domain protein [Bacillus cereus G9842] gi|228795831|gb|EEM43303.1| hypothetical protein bthur0004_7170 [Bacillus thuringiensis serovar sotto str. T04001] Length = 253 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 67 TKFKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|281412542|ref|YP_003346621.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga naphthophila RKU-10] gi|281373645|gb|ADA67207.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga naphthophila RKU-10] Length = 382 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 11/70 (15%) Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 KE+ + P N + + ++ + +H T +P Sbjct: 294 KEIDPALYWFGEYISPRTPL-------NGLGTRYLQLSNP-TYAIHGTSKPWEIGKR--- 342 Query: 339 ETSGCVRVRN 348 + GC+R+ N Sbjct: 343 ISHGCIRMFN 352 >gi|209972932|ref|YP_002300379.1| gp19.3 [Bacillus phage SPO1] gi|209871252|gb|ACI91008.1| gp19.3 [Bacillus phage SPO1] Length = 343 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G++S +V+ ++E+L +G F A ESA+K FQ G+ G+ Sbjct: 179 LSKGDNSSAVKTMQEKLNAAGF--SVGKADGIFGAKTESALKAFQKSVGISADGLYGP 234 Score = 41.9 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQ-MRHGLDPSGMVDSSTLEAMNVPVDL 171 + G+ + + A++ +Q + GL G+ +T +A+ + Sbjct: 290 AKNNGIDGYWGPKTQDAIRRYQSTKSGLKTDGIYGPATRKALEKDLKE 337 >gi|206600022|ref|YP_002242096.1| gp39 [Mycobacterium phage Konstantine] gi|206287110|gb|ACI12455.1| gp39 [Mycobacterium phage Konstantine] Length = 321 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIIS--GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G++ V ++++ + F V++AV FQ R + G V Sbjct: 181 LRIGSTGPEVLKMQKGMNAVFKNYKAMPLDEDGIFGPMVQAAVIEFQQRSLISVDGEVGP 240 Query: 160 STLEAMN 166 T + Sbjct: 241 QTKAKLA 247 >gi|323963704|gb|EGB59214.1| peptidase M23 [Escherichia coli M863] gi|327254961|gb|EGE66571.1| putative peptidoglycan binding domain protein [Escherichia coli STEC_7v] Length = 253 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 114 LRERLIISG---DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LR L ++G F AVK+FQ +GL+ G+V T + VP Sbjct: 6 LRFTLSVAGIVEMATAVVVEDGIFGKNTYDAVKIFQRYNGLNDDGIVGPQTWRKLGVP 63 >gi|261420536|ref|YP_003254218.1| carboxyl-terminal protease [Geobacillus sp. Y412MC61] gi|297531348|ref|YP_003672623.1| carboxyl-terminal protease [Geobacillus sp. C56-T3] gi|319768205|ref|YP_004133706.1| carboxyl-terminal protease [Geobacillus sp. Y412MC52] gi|261376993|gb|ACX79736.1| carboxyl-terminal protease [Geobacillus sp. Y412MC61] gi|297254600|gb|ADI28046.1| carboxyl-terminal protease [Geobacillus sp. C56-T3] gi|317113071|gb|ADU95563.1| carboxyl-terminal protease [Geobacillus sp. Y412MC52] Length = 482 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL + + ++ L G F E AV+ FQ + L +G +D Sbjct: 392 KPLRYDMNDEQIANAQKMLKGLGF--NPGRTDGYFSKETEQAVQAFQKANQLPVTGRIDE 449 Query: 160 STLEAMNVPVDLRIR 174 +T + + + +R Sbjct: 450 TTADVLQTKIMEAVR 464 >gi|225427816|ref|XP_002275758.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 391 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 9/92 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ +Q++++ L G + S+ S F+ +ES++K FQ + L+ +G +D+ Sbjct: 183 KKGDKREGIQKVKQYLQRYGYISSTHYSQMGSDDFNDALESSLKAFQTFYHLNSTGTLDA 242 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +T M+ P + L + L ++ Sbjct: 243 ATATLMSRP------RYAYPLHSVPWLPPEQP 268 >gi|213586771|ref|ZP_03368597.1| hypothetical protein SentesTyph_38025 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 257 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 6/101 (5%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIISKETI 75 YL + + + S + S++N + ++ M + S P + Sbjct: 161 YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQ--Y 218 Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLR 115 A A+ + WP+L L G S V LR Sbjct: 219 APMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDVPALR 257 >gi|90425734|ref|YP_534104.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90107748|gb|ABD89785.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 191 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 45/175 (25%), Gaps = 46/175 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + ++ L + G LR + VGR D RI Sbjct: 49 RTTVNFASNYAPGTIYIDTAERRLYLILQGGQALRYGIGVGR-DGFRWGGVHRITAKKEW 107 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 108 PSWTPPSQMLRRR---------------------------------------PDLPRHMA 128 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 G N + + + +H + EP +SGC R+ N + DL Sbjct: 129 GGIDNPLGARAMYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTNEDVQDLYD 179 >gi|323438436|gb|EGA96190.1| carboxy-terminal processing proteinase [Staphylococcus aureus O11] gi|323444074|gb|EGB01685.1| carboxy-terminal processing proteinase [Staphylococcus aureus O46] Length = 496 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G ++ FD +E+ +K FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGYKVDNET--TQFDQALENQIKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|206970115|ref|ZP_03231068.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218232518|ref|YP_002369837.1| hypothetical protein BCB4264_A5178 [Bacillus cereus B4264] gi|228942199|ref|ZP_04104739.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955295|ref|ZP_04117303.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961274|ref|ZP_04122893.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar pakistani str. T13001] gi|228975128|ref|ZP_04135687.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981767|ref|ZP_04142062.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis Bt407] gi|229072517|ref|ZP_04205719.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus F65185] gi|229082276|ref|ZP_04214739.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock4-2] gi|229181324|ref|ZP_04308654.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus 172560W] gi|229193312|ref|ZP_04320262.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus ATCC 10876] gi|296505469|ref|YP_003667169.1| protein ErfK/SrfK precursor [Bacillus thuringiensis BMB171] gi|206734692|gb|EDZ51861.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|218160475|gb|ACK60467.1| conserved hypothetical protein [Bacillus cereus B4264] gi|228590113|gb|EEK47982.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus ATCC 10876] gi|228602217|gb|EEK59708.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus 172560W] gi|228700708|gb|EEL53231.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus Rock4-2] gi|228710493|gb|EEL62466.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus F65185] gi|228777879|gb|EEM26151.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis Bt407] gi|228784649|gb|EEM32669.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798395|gb|EEM45389.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804428|gb|EEM51039.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817533|gb|EEM63618.1| ErfK/YbiS/YcfS/YnhG [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296326521|gb|ADH09449.1| protein erfK/srfK precursor [Bacillus thuringiensis BMB171] gi|326942851|gb|AEA18747.1| protein erfK/srfK precursor [Bacillus thuringiensis serovar chinensis CT-43] Length = 153 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 35/160 (21%), Gaps = 59/160 (36%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++ ++GK TV G+ TP +I + N + I D Sbjct: 39 KMDYYQDGKFIKSFTVATGKAATPTPKGTFQIVNKIKNRPYYT-GKIKGGD--------- 88 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY- 322 N + + Sbjct: 89 ----------------------------------------PRNPLGDRWLGLNMAGTYGT 108 Query: 323 ---MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 109 TYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFER 143 >gi|255558368|ref|XP_002520211.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223540703|gb|EEF42266.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] Length = 364 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ + +L+ G + + + FD +ESA+K +Q L+ +G +D T Sbjct: 54 RAGDKLEGLSKLKNYFHYFGYIPNTLSNFTDDFDDALESAIKTYQQNFNLNVTGELDEQT 113 Query: 162 LEAMNVPVDLRIRQLQ--VNLMRIKKLLEQK 190 L+ + P + + K Sbjct: 114 LDQLVRPRCGNADIINGSTTMNSGKWQTTTT 144 >gi|23099945|ref|NP_693411.1| carboxy-terminal processing protease [Oceanobacillus iheyensis HTE831] gi|22778176|dbj|BAC14446.1| carboxy-terminal processing protease [Oceanobacillus iheyensis HTE831] Length = 488 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 P L +S + ++ L G + FD AVK FQ + L+ +G VDS Sbjct: 399 EPFSLDETSEEIANMQVMLTGLGY--DTGRTDGYFDEQTAEAVKDFQADNDLEATGEVDS 456 Query: 160 ST 161 T Sbjct: 457 ET 458 >gi|300023503|ref|YP_003756114.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525324|gb|ADJ23793.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 255 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 40/162 (24%), Gaps = 44/162 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++++ L V + R + VG+ +I+R + P W Sbjct: 102 FPNSYAPGSIVIDTAGRRLYYVLSSTTAYRYPIAVGKQGFA-WSGVEKISRKVAWPDWYP 160 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + + P G N Sbjct: 161 PAEMRAR---------------------------------------KPGLPVHMQGGVRN 181 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + + +H T + +SGC+R+ N Sbjct: 182 PLGAMALYLG-STLYRIHGTNDVSSIGT---ATSSGCIRMTN 219 >gi|333027471|ref|ZP_08455535.1| hypothetical protein STTU_4975 [Streptomyces sp. Tu6071] gi|332747323|gb|EGJ77764.1| hypothetical protein STTU_4975 [Streptomyces sp. Tu6071] Length = 317 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V +L ERL G FD +E A+ +Q+ G G Sbjct: 242 VTQAVLRRGDSGPEVAKLEERLRAVGIYP--GRDDGRFDRGLEYALMTYQVTRGASDEHG 299 Query: 156 MVDSSTLEAMN 166 + + T + Sbjct: 300 VYGADTRTKLE 310 >gi|302772727|ref|XP_002969781.1| hypothetical protein SELMODRAFT_13930 [Selaginella moellendorffii] gi|302823297|ref|XP_002993302.1| hypothetical protein SELMODRAFT_3042 [Selaginella moellendorffii] gi|300138875|gb|EFJ05627.1| hypothetical protein SELMODRAFT_3042 [Selaginella moellendorffii] gi|300162292|gb|EFJ28905.1| hypothetical protein SELMODRAFT_13930 [Selaginella moellendorffii] Length = 301 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + +L+ L G + FD E+A+KL+Q GL+ +G +D T+ M P Sbjct: 22 LPQLKRYLQEFGYTSWEEFTPD-FDNQTEAAIKLYQSNFGLNATGTLDERTITQMMKP 78 >gi|225627605|ref|ZP_03785642.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|237815558|ref|ZP_04594555.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] gi|225617610|gb|EEH14655.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|237788856|gb|EEP63067.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A] Length = 270 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 70/208 (33%), Gaps = 18/208 (8%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV-GR 223 V + ++ + N+ ++ K A + N + ++ R Sbjct: 66 SPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAART----NNTAKANKYSIDPKFR 121 Query: 224 VDRQTPILHSRINRIMFNPY---WVIPRSIIQKDM-MALLRQDPQYLKDNNIHMIDEKGK 279 T + ++ +++ S + +A+ +Q ++ I E + Sbjct: 122 PQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKREWPR 181 Query: 280 EVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNN-TYMHDTPEPILFNNV 335 + E ++ + F D G N + S + +++ +H T +P + Sbjct: 182 WIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSS 241 Query: 336 VRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++GC R+ +++DL + T Sbjct: 242 ---ASNGCFRMINEDVMDLYDRVTLGTE 266 >gi|163760769|ref|ZP_02167849.1| LysM-repeat protein and domain [Hoeflea phototrophica DFL-43] gi|162282091|gb|EDQ32382.1| LysM-repeat protein and domain [Hoeflea phototrophica DFL-43] Length = 98 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRE-RLIISG-DLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPS 154 L G++ V L+ L ++G D + F E+AVK +Q + L Sbjct: 3 SSPTLSKGSAGEDVSALQHGLLQVAGADTPTDPGPIDGKFGQKTEAAVKAYQTQLKLKAD 62 Query: 155 GMVDSSTL 162 G+V T Sbjct: 63 GIVGDLTW 70 >gi|163732993|ref|ZP_02140437.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] gi|161393528|gb|EDQ17853.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] Length = 203 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 49/206 (23%) Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGK 212 G V+SS + +R+ + + + +LV+I + +L E G Sbjct: 32 GSVNSSGTTQGERDLTESVRRNISSFRTLDWQPYFSDLRKGAILVDIDSRALHYWAEGGD 91 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V + T ++I R + P W S+ L ++P Sbjct: 92 FYKLYPSSVPLSEELTRRGRTKIVRKVEGPSWRPTPSM--------LERNP--------- 134 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPIL 331 DW PG N M + + Y +H T + Sbjct: 135 --------------DW--------PEFIGPGPDNPMGTHALYLS--WTYYRIHGTHDTRK 170 Query: 332 FNNVVRFETSGCVRV--RNIIDLDVW 355 R ++GC+ + +I +L Sbjct: 171 IG---RQSSNGCIGLFNEHIAELFEL 193 >gi|1402944|emb|CAA66987.1| orfRM1 [Bacillus subtilis] Length = 466 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G++ +V+ ++ L G ++ +D S VK FQ + L+ +G++ Sbjct: 376 ADKTYKSGDTGTNVKVAQKMLKALGY---KVKVNSMYDQDFVSVVKQFQKKEKLNETGIL 432 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMR 182 T + + + ++ + + Sbjct: 433 TGDTTTKLMIELQKKLSDNDTQMEK 457 >gi|16079017|ref|NP_389840.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. 168] gi|221309859|ref|ZP_03591706.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. 168] gi|221314182|ref|ZP_03595987.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319105|ref|ZP_03600399.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. JH642] gi|221323378|ref|ZP_03604672.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. SMY] gi|81669151|sp|O34666|CTPA_BACSU RecName: Full=Carboxy-terminal processing protease CtpA; Short=C-terminal processing protease; Flags: Precursor gi|2415395|gb|AAB72063.1| proteinase [Bacillus subtilis] gi|2529476|gb|AAB81168.1| OrfRM1 [Bacillus subtilis subsp. subtilis str. 168] gi|2634351|emb|CAB13850.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. 168] Length = 466 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G++ +V+ ++ L G ++ +D S VK FQ + L+ +G++ Sbjct: 376 ADKTYKSGDTGTNVKVAQKMLKALGY---KVKVNSMYDQDFVSVVKQFQKKEKLNETGIL 432 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMR 182 T + + + ++ + + Sbjct: 433 TGDTTTKLMIELQKKLSDNDTQMEK 457 >gi|313113431|ref|ZP_07799020.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624158|gb|EFQ07524.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 230 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 6/112 (5%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR 115 AR P+ T ++ Y G P L G+ V L+ Sbjct: 112 AARGTGAWGYVEPLSQTPTWVHMDR---RYGTPACSGTTAGYP--TLRRGSRGCYVMILQ 166 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L G + F A E A+K FQ R L G+ S+ + ++ Sbjct: 167 DALSTLGY-QTGSRIDGIFGARTEEALKGFQRRTSLRVDGVCGCSSWKKIST 217 >gi|260433867|ref|ZP_05787838.1| ErfK/YbiS/YcfS/YnhG family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417695|gb|EEX10954.1| ErfK/YbiS/YcfS/YnhG family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 198 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 56/198 (28%), Gaps = 47/198 (23%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + V +R+ + + +G+ +L +I + ++ V Sbjct: 35 SEDAISVQPPVRRNISSFSQQNWQDHFDEIGVGCLLADITSRAVHYWGPDGTYKLYPSSV 94 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 + T ++ + R NP W S+ ++D Sbjct: 95 PMSEELTKRGYTEVVRKAENPSWTPTPSMRERD--------------------------- 127 Query: 282 FVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 P R + G N + + + +H T + R + Sbjct: 128 ------------PTLPQRIEGGDPGNPLGTRAMYLSWP-AYLVHGTHDTRKIG---RQSS 171 Query: 341 SGCVRVRN--IIDLDVWL 356 SGC+ + N + +L + Sbjct: 172 SGCIGLYNQHVEELYPLV 189 >gi|222099847|ref|YP_002534415.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga neapolitana DSM 4359] gi|221572237|gb|ACM23049.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga neapolitana DSM 4359] Length = 375 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 11/70 (15%) Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 KE+ + P N + + ++ + +H T +P Sbjct: 287 KEIDPALYWFGEYISPRTPL-------NGLGTRYLQLSNP-TYAIHGTSKPWEIGKR--- 335 Query: 339 ETSGCVRVRN 348 + GC+R+ N Sbjct: 336 ISHGCIRMFN 345 >gi|166366413|ref|YP_001658686.1| hypothetical protein MAE_36720 [Microcystis aeruginosa NIES-843] gi|166088786|dbj|BAG03494.1| hypothetical protein MAE_36720 [Microcystis aeruginosa NIES-843] Length = 417 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 9/110 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--GLDPSGMVDS 159 L +G+ + V +L+ +L G + F + AV+ FQ H + +G+VD Sbjct: 169 LQVGSQGLQVGQLQAKLNEIGF--NCGRVDKIFGPKTKQAVENFQRDHLGESEVTGIVDE 226 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 T + +R + ++ P + ++ Sbjct: 227 RTWNQIMDHPSVRPASVLIDPGHSPIHSGTDAKD-----GTPEYEMNLLQ 271 >gi|168051500|ref|XP_001778192.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670405|gb|EDQ56974.1| predicted protein [Physcomitrella patens subsp. patens] Length = 529 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R + G V+ L+E L G + + F E+AVK +Q G+ G++ Sbjct: 302 REMRKGAEGDEVKELQEALQELGFYSGEEDIEYSMFADGTETAVKTWQASIGVREDGVLS 361 Query: 159 SSTLEAMNVPVDLRIRQ 175 L + + Sbjct: 362 PELLAMLLSKTQTNAKS 378 >gi|328957708|ref|YP_004375094.1| N-acetylmuramoyl-L-alanine amidase [Carnobacterium sp. 17-4] gi|328674032|gb|AEB30078.1| N-acetylmuramoyl-L-alanine amidase [Carnobacterium sp. 17-4] Length = 367 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 22/74 (29%), Gaps = 4/74 (5%) Query: 91 RGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W L G S V ++ LI + AVK FQ+ Sbjct: 289 DGYWGPESASKMRILKTGFSGSDVYVVQAFLI-GNYHLKLGTPDKQYGPKTTEAVKQFQL 347 Query: 148 RHGLDPSGMVDSST 161 GL G+ T Sbjct: 348 NSGLLADGITGPKT 361 >gi|323137949|ref|ZP_08073023.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322396668|gb|EFX99195.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 189 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 13/93 (13%) Query: 277 KGKEVFVEEVDWN-----SPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPI 330 GK + DW+ + P G N M + I + +H T + Sbjct: 97 SGKYINP---DWSPPPCVKADHPELPDIIPGGAPGNPMGARAITLDRLH-IAIHGTSRKM 152 Query: 331 LFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + GC+R+ ++IDL + P Sbjct: 153 RRSIGT-AASYGCIRMLNEDVIDLFDRVRIGAP 184 >gi|190889695|ref|YP_001976237.1| hypothetical protein RHECIAT_CH0000056 [Rhizobium etli CIAT 652] gi|218514175|ref|ZP_03511015.1| hypothetical protein Retl8_10937 [Rhizobium etli 8C-3] gi|190694974|gb|ACE89059.1| hypothetical conserved protein [Rhizobium etli CIAT 652] gi|327192230|gb|EGE59196.1| hypothetical protein RHECNPAF_234005 [Rhizobium etli CNPAF512] Length = 227 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 45/198 (22%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T +A + I +++ R + ++VN L + +R + Sbjct: 52 TKDAGYSLPAIPIDRVKPQFRRQVVSYQTTERPGTIIVNTRERFLYYILANGKAMRYGIG 111 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ + + P W P+ + ++ + + ++ D G Sbjct: 112 VGKQGFA-WAGTAYVAWKQEWPTWHPPKEMAERR--PDVAK----------YVEDGMG-- 156 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVV 336 PG N + + + ++ + +H TPE Sbjct: 157 ---------------------PGLTNPLGARAMYLFNEDGKDTLFRLHGTPEWASIGT-- 193 Query: 337 RFETSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 194 -AASSGCIRLMNQDVIDL 210 >gi|255654572|ref|ZP_05399981.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-23m63] gi|296449345|ref|ZP_06891127.1| spore cortex-lytic enzyme SleC [Clostridium difficile NAP08] gi|296880721|ref|ZP_06904673.1| spore cortex-lytic enzyme SleC [Clostridium difficile NAP07] gi|296261815|gb|EFH08628.1| spore cortex-lytic enzyme SleC [Clostridium difficile NAP08] gi|296428294|gb|EFH14189.1| spore cortex-lytic enzyme SleC [Clostridium difficile NAP07] Length = 423 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGL--SVAFDAYVESAV 142 + + G P L +G+S V+ ++ +L IS + + E+AV Sbjct: 324 RAPIVSGVPVSFPGTTLQVGSSGQYVRTIQNQLNAISNSYPAVPKVIEDGIYGTDTENAV 383 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 ++FQ GL SG+VD T ++ Sbjct: 384 RIFQGIFGLPQSGVVDFKTWYEISR 408 >gi|157692648|ref|YP_001487110.1| peptidase [Bacillus pumilus SAFR-032] gi|157681406|gb|ABV62550.1| S41 family carboxy-terminal processing peptidase [Bacillus pumilus SAFR-032] Length = 461 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L +S V+ ++ + +D ++ VK FQ + L G++ Sbjct: 370 PKKTYQLNDSGDEVKAAQKMFQALDY---KAKANGEYDQAFQAIVKKFQTDNDLKADGIL 426 Query: 158 DSSTLEAMNVPVDLRIR 174 T + + +++ Sbjct: 427 TGDTTTVLMTKIQDKLK 443 >gi|119493547|ref|ZP_01624212.1| hypothetical protein L8106_25887 [Lyngbya sp. PCC 8106] gi|119452601|gb|EAW33783.1| hypothetical protein L8106_25887 [Lyngbya sp. PCC 8106] Length = 194 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSG 155 + + L LG + +V+ ++RL+ +G G + + +++A++ FQ + GL G Sbjct: 36 VELPVLSLGVAGEAVRFAQQRLMANGY---RIGFNGQYGPQMKAAIEHFQAYYGGLVVDG 92 Query: 156 MVDSSTLE 163 ++ +T Sbjct: 93 ILGENTWR 100 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + L+ G+ +V+ L+ RL G S + F AV++FQ R L G+ Sbjct: 127 VNMSELNQGHVGDAVECLQLRLYAQGF---SLFIDGDFGLRTREAVEVFQRRESLKIDGI 183 Query: 157 VDSSTLEAMN 166 V T + Sbjct: 184 VGVQTWRKLG 193 >gi|159898673|ref|YP_001544920.1| N-acetylmuramoyl-L-alanine amidase [Herpetosiphon aurantiacus ATCC 23779] gi|159891712|gb|ABX04792.1| N-acetylmuramoyl-L-alanine amidase family 2 [Herpetosiphon aurantiacus ATCC 23779] Length = 356 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 ++ W +L + L G++ +V+ L+ +L + + +F V + V+ FQ Sbjct: 280 GVVGAATWEKLIM-TLRSGDTGEAVKALQNQLTVQSY---PTTIDGSFGTGVNTLVRAFQ 335 Query: 147 MRHGLDPSGMVDSSTLE 163 L G+V ++ Sbjct: 336 TNRQLTVDGVVGLNSWN 352 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 15/79 (18%) Query: 94 WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 WP L P L LR R + AF E+AVK FQ + Sbjct: 226 WPILRRNTPATGLAKTMQY----LLRAR-------GATITADGAFGPGTETAVKSFQTAN 274 Query: 150 GLDPSGMVDSSTLEAMNVP 168 GL G+V ++T E + + Sbjct: 275 GLTSDGVVGAATWEKLIMT 293 >gi|302534605|ref|ZP_07286947.1| predicted protein [Streptomyces sp. C] gi|302443500|gb|EFL15316.1| predicted protein [Streptomyces sp. C] Length = 283 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 6/75 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-----GLDPSGMV 157 G + V L++ LI +G ++ + + AV F R+ GL + Sbjct: 210 KPGATHAQVAELQQLLIKAGYGPIKGAVTRFYGPETQRAVARFHDRNPAYRSGLH-DPRI 268 Query: 158 DSSTLEAMNVPVDLR 172 A+ R Sbjct: 269 GPKGFVALQKQAGRR 283 >gi|110677797|ref|YP_680804.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter denitrificans OCh 114] gi|109453913|gb|ABG30118.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter denitrificans OCh 114] Length = 203 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 47/197 (23%) Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGK 212 G V+S+ + +R+ + + + +LV+I + +L E G Sbjct: 32 GSVNSAGTTQGERDLTETVRRNISSFRTLDWQPYFSDLRRGAILVDIDSRALHYWAEGGD 91 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V + T ++I R + P W S+ L ++P Sbjct: 92 FYKLYPSSVPLSEELTRRGRTKIVRKVEGPSWRPTPSM--------LERNP--------- 134 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPIL 331 DW PG N M + + Y +H T + Sbjct: 135 --------------DW--------PEFIGPGPDNPMGTHALYLS--WTYYRIHGTHDTRK 170 Query: 332 FNNVVRFETSGCVRVRN 348 R ++GC+ + N Sbjct: 171 IG---RQSSNGCIGLFN 184 >gi|90418402|ref|ZP_01226314.1| putative efflux transporter, RND family, membrane fusion protein subunit [Aurantimonas manganoxydans SI85-9A1] gi|90338074|gb|EAS51725.1| putative efflux transporter, RND family, membrane fusion protein subunit [Aurantimonas manganoxydans SI85-9A1] Length = 517 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L++RL G + A +A++ +Q +GL+ +G V + A+ Sbjct: 455 VRALQQRLETLGY--SPGTVDGVLGASTRAAIRAYQRDNGLEVTGEVTPALAGAL 507 >gi|86355721|ref|YP_467613.1| hypothetical protein RHE_CH00053 [Rhizobium etli CFN 42] gi|86279823|gb|ABC88886.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 227 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 45/198 (22%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T +A + I +++ R + ++VN L + +R + Sbjct: 52 TKDAGYSLPAIPIDRVKPQFRRQVVSYQTTERPGTIIVNTRERFLYYILPNGKAMRYGIG 111 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ + + P W P K+M +Y+++ Sbjct: 112 VGKQGFA-WAGTAYVAWKQEWPTWHPP-----KEMAERRPDVAKYVEEG----------- 154 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVV 336 PG N + + + ++ + +H TPE Sbjct: 155 -------------------MGPGLSNPLGARAMYLFNDDGKDTLFRLHGTPEWASIGT-- 193 Query: 337 RFETSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 194 -AASSGCIRLMNQDVIDL 210 >gi|328880760|emb|CCA53999.1| hypothetical protein SVEN_0712 [Streptomyces venezuelae ATCC 10712] Length = 134 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 9/80 (11%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQ 146 + WP +P L G+ V+ L+ LI + +D + + F E+AV FQ Sbjct: 48 AYNDWP-VPAVDLARGSRGDCVRALQWALIRTNFVDSADVMTFIDGDFGPKTEAAVLRFQ 106 Query: 147 MRH----GLDPSGMVDSSTL 162 R+ G G+V T Sbjct: 107 SRYPRETGGP-DGIVGIKTW 125 >gi|255554154|ref|XP_002518117.1| conserved hypothetical protein [Ricinus communis] gi|223542713|gb|EEF44250.1| conserved hypothetical protein [Ricinus communis] Length = 386 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 9/155 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+ V+ ++E L+ G + + +F + E AVK +Q G G++ + Sbjct: 169 TLRKGSEGDEVREMQEALLNLGFYSGEEDMEFSSFSSGTERAVKTWQASLGAPEDGIMTA 228 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 L R+ Q N + + + + +A+ AV + + Sbjct: 229 ELL--------ERLYVGQQNKVTGSTISIDQKESSLTVSQKESANGAAVASITEISETQQ 280 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 + + + ++ W P ++ KD Sbjct: 281 KIVKDGVTEVKGSQQRVFLLGENRWEEPSRLVSKD 315 >gi|302518748|ref|ZP_07271090.1| predicted protein [Streptomyces sp. SPB78] gi|302427643|gb|EFK99458.1| predicted protein [Streptomyces sp. SPB78] Length = 317 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V +L ERL G FD +E A+ +Q+ G G Sbjct: 242 VTQAVLRRGDSGPEVAKLEERLRAVGIYP--GRDDGRFDRGLEYALMTYQVTRGASDEHG 299 Query: 156 MVDSSTLEAMN 166 + + T + Sbjct: 300 VYGADTRTKLE 310 >gi|167947216|ref|ZP_02534290.1| ErfK/YbiS/YcfS/YnhG family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 75 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 +H T +P + +R + GC+R+ D++ + L D+ ++ + ++ Sbjct: 8 RGYLLHGTNKP--YGVGMR-VSHGCIRLY-PEDIEEFFLADSSEYAGADHQSSLQGGLAG 63 Query: 379 PVKLATEVP 387 L P Sbjct: 64 WATLRRGAP 72 >gi|75910951|ref|YP_325247.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704676|gb|ABA24352.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 269 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 14/81 (17%) Query: 91 RGGWPELPIR------PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 GG P P L LG+ +V ++ + + + + A V+ Sbjct: 123 SGGRPTQPGPGVGGTVTLRLGSRGQAVSAVQRAIGVE--------PTGYYGAVTARRVRE 174 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ +GL G+V T A+ Sbjct: 175 FQANNGLRADGIVGPETRNAL 195 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ +V ++ L + + + V+ FQ +GL G+V Sbjct: 210 TLSFGSRGSAVSEVQRALGVE--------PTGYYGTVTVRRVREFQANNGLRVDGVVGPE 261 Query: 161 TLEAMNVP 168 T A+ Sbjct: 262 TRSALLRS 269 >gi|312116025|ref|YP_004013621.1| hypothetical protein Rvan_3337 [Rhodomicrobium vannielii ATCC 17100] gi|311221154|gb|ADP72522.1| protein of unknown function DUF847 [Rhodomicrobium vannielii ATCC 17100] Length = 345 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 LH G V L+ RL G P+ + F AV LFQ + L G Sbjct: 159 DETLHAGMRGREVSSLQARLRALGY--PAGAVDGIFGEQTHRAVMLFQHDNAL--DGEAG 214 >gi|304310927|ref|YP_003810525.1| hypothetical protein HDN1F_12890 [gamma proteobacterium HdN1] gi|301796660|emb|CBL44872.1| Conserved hypothetical protein [gamma proteobacterium HdN1] Length = 162 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 25/164 (15%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI----NRIMFNPYWVIPR 248 R + ++I SL E G + + R + +RI P Sbjct: 3 RRQIEISIADQSLALCEAGSIIKIYRISTARNGAGNQNGSGKTPLGRHRIRAAIGAQQPM 62 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + + L + ++ + + W + N + Sbjct: 63 NAVFVGRRPTGEVYSEALARQHPQ------RDWILTRILWLCGCEIGY---------NRL 107 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + R Y+H TP+ + GC+R+RN L Sbjct: 108 GNVD---SQRRYIYIHGTPDSEPMGVP---LSHGCIRMRNADIL 145 >gi|206973101|ref|ZP_03234023.1| peptidoglycan-binding domain 1 protein [Bacillus cereus AH1134] gi|206731985|gb|EDZ49185.1| peptidoglycan-binding domain 1 protein [Bacillus cereus AH1134] Length = 595 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGL 151 P L G+ +V +++ L I LD P +S FDA +AVK FQ + + Sbjct: 368 KSFPGYNLKEGDQKGAVLTVQKYLFHIRKKYLDIPEVIISGKFDANTVNAVKKFQKIYEI 427 Query: 152 DPSGMVDSSTLEAMN 166 SG+VD T +N Sbjct: 428 PESGIVDELTWNKLN 442 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 8/84 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV+ L+ L G D + + E +VK FQ G +G+V Sbjct: 458 LQNGSQGESVKTLQTLLKKFGYYD--GQIDGFYGLGTEKSVKEFQKIKGFTVTGIVRKEL 515 Query: 162 LEAMNV------PVDLRIRQLQVN 179 ++ + L N Sbjct: 516 WRVLDELQHTYGSPRTTLNSLANN 539 >gi|114797087|ref|YP_759395.1| putative localization factor protein PodJ [Hyphomonas neptunium ATCC 15444] gi|114737261|gb|ABI75386.1| putative localization factor protein PodJ [Hyphomonas neptunium ATCC 15444] Length = 1238 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 20/119 (16%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVS---------VQR 113 + S + ET+ + + W E P L G VQ Sbjct: 1129 VRSLSSRLPPETVREVMET---------ADLWSETPSIALANGRFGAQRWNTGNPLQVQA 1179 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 ++ L G L A +A++ +Q GL SG V ++ +N R Sbjct: 1180 VQTALSRLGYLSGEA--DGVLGAQTANAIRDYQRNEGLSVSGTVTPELIDRLNTGASNR 1236 >gi|168213487|ref|ZP_02639112.1| spore cortex-lytic enzyme SleC [Clostridium perfringens CPE str. F4969] gi|940393|dbj|BAA08081.1| spore cortex-lytic enzyme pre-pro-form [Clostridium perfringens] gi|14349151|dbj|BAB60714.1| sleC [Clostridium perfringens] gi|170715068|gb|EDT27250.1| spore cortex-lytic enzyme SleC [Clostridium perfringens CPE str. F4969] Length = 438 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 5/108 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + AVK FQ L + Sbjct: 329 PGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQT 388 Query: 155 GMVDSSTLEAMN--VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 G VD +T ++ +I +L+ ++ + M R + I Sbjct: 389 GEVDYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKI 436 >gi|18311542|ref|NP_563476.1| spore cortex-lytic enzyme SleC [Clostridium perfringens str. 13] gi|18146226|dbj|BAB82266.1| spore cortex-lytic enzyme [Clostridium perfringens str. 13] Length = 438 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 5/108 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + AVK FQ L + Sbjct: 329 PGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQT 388 Query: 155 GMVDSSTLEAMN--VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 G VD +T ++ +I +L+ ++ + M R + I Sbjct: 389 GEVDYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKI 436 >gi|323464476|gb|ADX76629.1| carboxy-terminal processing proteinase ctpA, putative [Staphylococcus pseudintermedius ED99] Length = 509 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y++I +P + H G V+ ++ L G + ++A + +A Sbjct: 410 ADYENI------SVIPTKTTYHQGQEDKHVKSIKIGLKALGY--DVGTIDEHYNAQLTTA 461 Query: 142 VKLFQMRHGLDPSGMVDSST 161 VK FQ ++ L +GM + T Sbjct: 462 VKQFQQKNDLTANGMFNKET 481 >gi|294851935|ref|ZP_06792608.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NVSL 07-0026] gi|294820524|gb|EFG37523.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NVSL 07-0026] Length = 238 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 74 PAIPIQKMDTRYLRQVVPDPTGEMPGAIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 133 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 164 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 165 SAKNGGM-----APGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 216 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 217 FLNQDIIDLYDRVPAKTP 234 >gi|289976573|gb|ADD21635.1| matrix metalloprotease 1 [Nicotiana benthamiana] Length = 364 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + ++++ G + + FD +ESA+K +Q L+ +G++D+ T+E Sbjct: 52 GQKVDGLAKIKKYFYNFGYISSLSNFTDDFDDALESALKTYQQNFNLNTTGVLDAPTIEH 111 Query: 165 MNVP 168 + P Sbjct: 112 LIRP 115 >gi|154245584|ref|YP_001416542.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] gi|154159669|gb|ABS66885.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] Length = 210 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 45/183 (24%), Gaps = 46/183 (25%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 Q+ R ++++ L V+ +R + VGR Q Sbjct: 51 PQDDYAQMDPAFRRQPVYFRTTEKPGTIVIHTNERFLYLVQGDNRAMRYGIGVGRDGFQ- 109 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + R P W P +IQ+ Sbjct: 110 WSGLKSVERKAEWPDWTPPAEMIQRQ---------------------------------- 135 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 P G N M + + Y +H T +P +SGC R+ Sbjct: 136 -----PYLPRFMAGGPGNPMGARALYISG--TVYRIHGTNQPQTIGY---AVSSGCFRLV 185 Query: 348 NII 350 N Sbjct: 186 NSD 188 >gi|163852744|ref|YP_001640787.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163664349|gb|ABY31716.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 199 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R K ++++ L V G +R V VGR + + Sbjct: 57 RDTVAYAGKEKPGTIVISTSQRRLYYVLGGGEAIRYGVGVGRQG-FSWSGTKTVTGKKEW 115 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++ + P+ Sbjct: 116 PAWRPPAQMLARR---------------------------------------PDLPRYMA 136 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G+ N + + + S +H + EP +SGC+R+ N Sbjct: 137 GGQDNPLGARAMYLGSS-LYRIHGSNEPETMGA---AVSSGCIRMTN 179 >gi|254511433|ref|ZP_05123500.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacteraceae bacterium KLH11] gi|221535144|gb|EEE38132.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacteraceae bacterium KLH11] Length = 194 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 52/209 (24%) Query: 157 VDSSTLEAMNVPVDLRIRQLQV-----NLMRIKKLLEQK-MGLRYVLVNIPAASLEAVEN 210 V + +++A D QL V + + +G+ +L +I + ++ Sbjct: 20 VRAQSVDAFPQSEDAISTQLPVRRNVSSFSQQNWQDHFDELGVGCLLADITSRAVHYWGP 79 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 V + T ++++ R NP W S+ ++D Sbjct: 80 DGTYKLYPSSVPMSEELTKRGYTKVVRKRENPSWTPTASMRERD---------------- 123 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEP 329 P+ R + G N + + + +H T + Sbjct: 124 -----------------------PSLPIRMEGGDPGNPLGTRAMYLDWP-AYLVHGTHDT 159 Query: 330 ILFNNVVRFETSGCVRVRN--IIDLDVWL 356 R +SGC+ + N + +L + Sbjct: 160 RKIG---RQSSSGCIGLYNQHVEELYPLV 185 >gi|254472009|ref|ZP_05085410.1| Putative peptidoglycan binding domain protein [Pseudovibrio sp. JE062] gi|211959211|gb|EEA94410.1| Putative peptidoglycan binding domain protein [Pseudovibrio sp. JE062] Length = 292 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 20/143 (13%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 + E + + + A + IP S E I + + + Sbjct: 167 GQVTEALLARLTMDFDAFTPSPNASAAESAEIPIPRASPEQIQALTQGGSNLTQVS---- 222 Query: 94 WPELPIRPLHLGNSS---VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G + +++L++ L G + SA+ FQ + Sbjct: 223 -----------GQTDVMTERIKKLQQTLADLGY--GPLTIDGIPGGQTSSAIAAFQRDNA 269 Query: 151 LDPSGMVDSSTLEAMNVPVDLRI 173 L G + + + RI Sbjct: 270 LKVDGQMSEALFSKLAAVSGTRI 292 Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V +++ L G S L F E AV+ +Q + + +G V + L + + D Sbjct: 125 VAEVQKELRRLGVYPGS--LDGQFGPATERAVRAYQRQRAMSETGQVTEALLARLTMDFD 182 Query: 171 L 171 Sbjct: 183 A 183 >gi|190895029|ref|YP_001985322.1| hypothetical protein RHECIAT_PC0000695 [Rhizobium etli CIAT 652] gi|190700690|gb|ACE94772.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 216 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 47/187 (25%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L + K +R V VGR + + I+ P W P + ++ Sbjct: 73 LYVIMENKTAIRYGVGVGREGFK-WFGRATIDAKSLWPRWTPPPEMRKRH---------- 121 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NT 321 P F N + + + Sbjct: 122 ----------------------------PELPEFVDGGSPKNPLGPRAMYLHRDGVDTGY 153 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 H T EP +SGC+R+ N +D L + P + + + + + + Sbjct: 154 RFHGTLEPWSIGKD---ASSGCIRIFNEDAID--LYQRCPIGTAVQVLPHIADQAESTTQ 208 Query: 382 LATEVPV 388 ++ PV Sbjct: 209 VSQTTPV 215 >gi|167745359|ref|ZP_02417486.1| hypothetical protein ANACAC_00050 [Anaerostipes caccae DSM 14662] gi|317473097|ref|ZP_07932396.1| peptidoglycan binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655080|gb|EDR99209.1| hypothetical protein ANACAC_00050 [Anaerostipes caccae DSM 14662] gi|316899435|gb|EFV21450.1| peptidoglycan binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 411 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ V++++E+L I+ D P+ + + AV++FQ GL + Sbjct: 326 PGYDLTIGSTGDKVRQMQEQLNRIAKDYPSIPTIPVDGTYGQQTADAVRVFQNVFGLGQT 385 Query: 155 GMVDSSTL 162 G+VD T Sbjct: 386 GVVDYPTW 393 >gi|218531585|ref|YP_002422401.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218523888|gb|ACK84473.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 199 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R K ++++ L V G +R V VGR + + Sbjct: 57 RDTVAYAGKEKPGTIVISTSQRRLYYVLGGGEAIRYGVGVGRQG-FSWSGTKTVTGKKEW 115 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++ + P+ Sbjct: 116 PAWRPPAQMLARR---------------------------------------PDLPRYMA 136 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G+ N + + + S +H + EP +SGC+R+ N Sbjct: 137 GGQDNPLGARAMYLGSS-LYRIHGSNEPETMGA---AVSSGCIRMTN 179 >gi|229153222|ref|ZP_04281401.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus m1550] gi|228630321|gb|EEK86971.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus m1550] Length = 153 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 35/160 (21%), Gaps = 59/160 (36%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++ ++GK TV G+ TP +I + N + I D Sbjct: 39 KMDYYQDGKFIKSFTVATGKATTPTPKGTFQIVNKIKNRPYYT-GKIKGGD--------- 88 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY- 322 N + + Sbjct: 89 ----------------------------------------PRNPLGDRWLGLNMAGTYGT 108 Query: 323 ---MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 109 TYAIHGTNNNQAIGKWT---TLGCIRMYNND--IHWLFER 143 >gi|268610247|ref|ZP_06143974.1| hypothetical protein RflaF_12199 [Ruminococcus flavefaciens FD-1] Length = 367 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL G+ V L+E L + + F A E AV FQ +HGL +G D+ Sbjct: 46 PLARGSKGEDVCWLQESLNQA--CGADLVVDDTFGAKTEEAVLNFQKQHGLPETGQADTH 103 Query: 161 TLE 163 T+E Sbjct: 104 TIE 106 >gi|83950745|ref|ZP_00959478.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius nubinhibens ISM] gi|83838644|gb|EAP77940.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius nubinhibens ISM] Length = 184 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 53/187 (28%), Gaps = 46/187 (24%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 M + ++R+ + + VLV+I + +L V Sbjct: 23 EMEQDISSKVRRNVSAFRSLDWQPYFSNLNNGAVLVDIDSRALHFWTESGEYFLFPSSVP 82 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + T + + R + P W S+ L ++P Sbjct: 83 MSEELTRRGRTSVVRKVEGPEWRPTPSM--------LERNP------------------- 115 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETS 341 DW S PG N + + + Y +H T + R ++ Sbjct: 116 ----DWPSYVG--------PGPDNPLGTHALYLS--WTYYRIHGTHDTRKIG---RRSSN 158 Query: 342 GCVRVRN 348 GC+ + N Sbjct: 159 GCIGLYN 165 >gi|266621402|ref|ZP_06114337.1| spore cortex-lytic enzyme SleC [Clostridium hathewayi DSM 13479] gi|288866936|gb|EFC99234.1| spore cortex-lytic enzyme SleC [Clostridium hathewayi DSM 13479] Length = 424 Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S VQ+++E+L I + P + +AV+ FQ GL + Sbjct: 339 PGYDLTIGSSGQKVQQVQEQLDAIATVYSAIPHITPDGIYGPATAAAVREFQSIFGLPVT 398 Query: 155 GMVDSSTLEAMN 166 G++D T ++ Sbjct: 399 GVIDFRTWYKIS 410 >gi|299134352|ref|ZP_07027545.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298591099|gb|EFI51301.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 190 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 22/138 (15%) Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQ--KDMMALLRQDPQYLKDNNIHM----IDEKG 278 +PI R++ P SI+ ++ L P I + G Sbjct: 41 GHSSPIPRQRVSY----QSNYAPGSIVVDTRERRLYLITAPGEAMRYGIGVGRDGFRWGG 96 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDP--------GKINAMASTKIEFYSRNNTYMHDTPEPI 330 + +W S PP+ + R+ P G N + + + +H + EP Sbjct: 97 VHRITAKKEWPSWTPPSQMLRRRPDLPRHMKGGPENPLGARAMYLG-STLYRIHGSNEPE 155 Query: 331 LFNNVVRFETSGCVRVRN 348 +SGC R+ N Sbjct: 156 TIGQ---AVSSGCFRMVN 170 >gi|229020273|ref|ZP_04177042.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH1273] gi|229026497|ref|ZP_04182852.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH1272] gi|228734805|gb|EEL85445.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH1272] gi|228741026|gb|EEL91255.1| ErfK/YbiS/YcfS/YnhG [Bacillus cereus AH1273] Length = 145 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 59/167 (35%) Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +V+ ++ +NGK +V G+V TP ++ + N + Sbjct: 24 IVDTKLNKMDFYQNGKFIKSFSVATGKVATPTPKGTFQVVNKIKNRPYY----------- 72 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 +I N + + Sbjct: 73 -----------KGHIK----------------------------GGDPRNPLGDRWLGLN 93 Query: 317 SRNNTY----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 94 MAGTYGTTYAIHGTNNNQAIGK---ATTLGCIRMYNND--IHWLFER 135 >gi|254520431|ref|ZP_05132487.1| spore cortex-lytic enzyme SleC [Clostridium sp. 7_2_43FAA] gi|226914180|gb|EEH99381.1| spore cortex-lytic enzyme SleC [Clostridium sp. 7_2_43FAA] Length = 479 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 8/119 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V+ ++E L I L P + A AV++FQ L + Sbjct: 361 PGYDLVIGSSGQEVRIIQEFLNRISQNYPLIPKVAQDGIYGANTAEAVRVFQGVFNLPKT 420 Query: 155 GMVDSSTLEAMN---VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 G+VD +T ++ V V + + + Y IP + +++ Sbjct: 421 GVVDYATWYKISDVYVGVTRIAELRGSARSVQRIFVPPRSFDNYYDPTIPKF--DYMDD 477 >gi|162449468|ref|YP_001611835.1| hypothetical protein sce1198 [Sorangium cellulosum 'So ce 56'] gi|161160050|emb|CAN91355.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 241 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 17/96 (17%) Query: 86 QDILSRGGWPELPIRPLHLGNSSV---------------SVQRLRERLIISGDLDPSKGL 130 Q ++ P++P L +G V ++ RL G Sbjct: 141 QGLVEAFVPPDMPRARLTVGEGDDVHVYNIAPRTLNPSRDVDGIQARLANLGYYS--GPR 198 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 DA +A+K FQ H L+ +G D +T A++ Sbjct: 199 HGELDAATIAALKRFQSDHDLEATGKPDEATASALS 234 >gi|78224668|ref|YP_386415.1| ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] gi|78195923|gb|ABB33690.1| ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] Length = 482 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 54/185 (29%), Gaps = 44/185 (23%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGL---RSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 R ++VN+ L + L V VG +R TP +R+ R P W + Sbjct: 164 DTPRRGIVVNVATMRLFQYKGDGASLAVSTYPVGVGTKERPTPTGPTRVYRKAARPTWHV 223 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + + + PG N Sbjct: 224 PASIAED-----------------------------------HRKKGDPLPPEVPPGPEN 248 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + +H T +P T+GC+R+ ++ L DTP + Sbjct: 249 PLGEYALYLSKP-GYLIHGTNKPASIG---LKATNGCMRLY-PENI-EVLYNDTPVNTPV 302 Query: 367 HIEEV 371 I Sbjct: 303 AIVNQ 307 >gi|295101499|emb|CBK99044.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii L2-6] Length = 230 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 3/84 (3%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 Y RG P L G+ V L++ L G + F + E A+K Sbjct: 137 RYGTPACRGTTAGYP--TLRRGSRGCYVMILQDALSTLGY-QTGNRIDGIFGSRTEEALK 193 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ R L G+ ++ + ++ Sbjct: 194 GFQRRTSLRADGVCGCNSWKKIST 217 >gi|262275011|ref|ZP_06052822.1| general secretion pathway protein A/general secretion pathway protein B [Grimontia hollisae CIP 101886] gi|262221574|gb|EEY72888.1| general secretion pathway protein A/general secretion pathway protein B [Grimontia hollisae CIP 101886] Length = 755 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 102 LHLGNSSVSVQRLRERLI-ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G V+ L +RL + GD + +S F V+ FQ GLD G+ + Sbjct: 483 IKFGQRGERVRWLDQRLNLVLGD---TTPVSDIFGQAQRVKVREFQRSKGLDADGIPGAM 539 Query: 161 TL 162 T Sbjct: 540 TF 541 >gi|148559501|ref|YP_001259057.1| hypothetical protein BOV_1095 [Brucella ovis ATCC 25840] gi|260546601|ref|ZP_05822340.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260566329|ref|ZP_05836799.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|260754878|ref|ZP_05867226.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260758095|ref|ZP_05870443.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260761919|ref|ZP_05874262.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883890|ref|ZP_05895504.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|261214130|ref|ZP_05928411.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|261219484|ref|ZP_05933765.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261222302|ref|ZP_05936583.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|261314141|ref|ZP_05953338.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261317770|ref|ZP_05956967.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261321979|ref|ZP_05961176.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|261325226|ref|ZP_05964423.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261752441|ref|ZP_05996150.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|261755101|ref|ZP_05998810.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|261758326|ref|ZP_06002035.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|265984195|ref|ZP_06096930.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|265988801|ref|ZP_06101358.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|265995052|ref|ZP_06107609.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|265998266|ref|ZP_06110823.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|265999446|ref|ZP_05466404.2| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 2 str. 63/9] gi|148370758|gb|ABQ60737.1| conserved hypothetical protein [Brucella ovis ATCC 25840] gi|260095651|gb|EEW79528.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260155847|gb|EEW90927.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|260668413|gb|EEX55353.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260672351|gb|EEX59172.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674986|gb|EEX61807.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260873418|gb|EEX80487.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|260915737|gb|EEX82598.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|260920886|gb|EEX87539.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|260924573|gb|EEX91141.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261294669|gb|EEX98165.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|261296993|gb|EEY00490.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261301206|gb|EEY04703.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261303167|gb|EEY06664.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261738310|gb|EEY26306.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. F5/99] gi|261742194|gb|EEY30120.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|261744854|gb|EEY32780.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|262552734|gb|EEZ08724.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|262766165|gb|EEZ11954.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|263094003|gb|EEZ17937.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis bv. 2 str. 63/9] gi|264660998|gb|EEZ31259.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|264662787|gb|EEZ33048.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|326538864|gb|ADZ87079.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M5-90] Length = 255 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 9/119 (7%) Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINA 307 + ++ +A+ +Q ++ I E + + E ++ + F D G N Sbjct: 136 TTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNP 195 Query: 308 MASTKIEF--YSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + S + +++ +H T +P + ++GC R+ +++DL + T Sbjct: 196 LGSRAMYLFQGNKDTYIRIHGTVQPWTIGSS---ASNGCFRMINEDVMDLYDRVTLGTE 251 >gi|326391572|ref|ZP_08213103.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] gi|325992402|gb|EGD50863.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] Length = 229 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ +V V ++ L +G L + + F ++AV FQ H L P G+V S T A Sbjct: 166 GSQNVYVATCQDALYYNGYLTLT-DIDGIFGDITKNAVIKFQKDHNLTPDGIVGSQTWSA 224 Query: 165 M 165 + Sbjct: 225 L 225 >gi|228899435|ref|ZP_04063692.1| hypothetical protein bthur0014_6570 [Bacillus thuringiensis IBL 4222] gi|228860192|gb|EEN04595.1| hypothetical protein bthur0014_6570 [Bacillus thuringiensis IBL 4222] Length = 219 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 33 TKFKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|254502110|ref|ZP_05114261.1| phage lysozyme, putative [Labrenzia alexandrii DFL-11] gi|222438181|gb|EEE44860.1| phage lysozyme, putative [Labrenzia alexandrii DFL-11] Length = 296 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAMN 166 + L+ L + G + F A ++AVK FQ + L G+ +T A+ Sbjct: 171 GSDIMELQRSLKMLGF--DPGPIDGFFGAQTKAAVKDFQKAYPPLAVDGIPGPATRSALA 228 Query: 167 VPVDLR 172 + LR Sbjct: 229 RSISLR 234 >gi|226844843|gb|ACO87302.1| SleC [Clostridium perfringens] Length = 438 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 5/108 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + AVK FQ L + Sbjct: 329 PGYTLKFGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFDLPQT 388 Query: 155 GMVDSSTLEAMN--VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 G VD +T ++ +I +L+ ++ + R + I Sbjct: 389 GEVDYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTMTDRRENVPKI 436 >gi|89070993|ref|ZP_01158216.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanicola granulosus HTCC2516] gi|89043456|gb|EAR49671.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanicola granulosus HTCC2516] Length = 187 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 7/70 (10%) Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRF 338 + ++ + + G N + + + + +H TP+ R Sbjct: 102 PDMIERDPESYKQYEDGMPGGPNNPLGARALYLFEPGRGDTFLRIHGTPDAQTIG---RR 158 Query: 339 ETSGCVRVRN 348 ++GCVR+ N Sbjct: 159 VSNGCVRLVN 168 >gi|119718549|ref|YP_925514.1| peptidoglycan binding domain-containing protein [Nocardioides sp. JS614] gi|119539210|gb|ABL83827.1| Peptidoglycan-binding domain 1 protein [Nocardioides sp. JS614] Length = 485 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG++ ++V+RL+ L +G + S ++ F A AV+ +Q + G + SG+ Sbjct: 415 TPVLKLGSTGLAVRRLQRTLNAAG-VSDSVRMNGMFKAETADAVRAYQQQVGTEVSGVAG 473 Query: 159 SSTLEAMNV 167 T A++ Sbjct: 474 YRTWRALSA 482 >gi|302879426|ref|YP_003847990.1| ErfK/YbiS/YcfS/YnhG family protein [Gallionella capsiferriformans ES-2] gi|302582215|gb|ADL56226.1| ErfK/YbiS/YcfS/YnhG family protein [Gallionella capsiferriformans ES-2] Length = 159 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 5/48 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRY 366 Y+H TP+ + GC+R+RN +L + TP Sbjct: 115 IYIHGTPDTEPMGE---ARSHGCIRMRNADLVELYDLVPAGTPVEIVE 159 >gi|291483804|dbj|BAI84879.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. natto BEST195] Length = 297 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%) Query: 104 LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 S V +++ L + G+ + AV FQ +GL G+ Sbjct: 227 PYTSGEHVFQVQRALAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGP 286 Query: 160 STLEAMNV 167 +T + Sbjct: 287 ATKAKIAA 294 >gi|291299239|ref|YP_003510517.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568459|gb|ADD41424.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 198 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 106 NSSVSVQRL-RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + + L + L G L S + F A K +Q H LD G V S T A Sbjct: 68 SRGTDLVLLWQSILAADGYLPGS-EIDGYFGDRTAEATKEWQSDHDLDSDGRVGSKTWAA 126 Query: 165 MN 166 + Sbjct: 127 AD 128 >gi|224146279|ref|XP_002325947.1| predicted protein [Populus trichocarpa] gi|222862822|gb|EEF00329.1| predicted protein [Populus trichocarpa] Length = 308 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G + + L++ L G S FD ++E A+K +Q L+ +G +DSS Sbjct: 46 IQKGQTVEGLIELKQYLKKFGYYPSDITLTSSDFDDHLELALKTYQEYFHLNVTGNLDSS 105 Query: 161 TLEAMNVP 168 T++ M +P Sbjct: 106 TIQQMMIP 113 >gi|114707693|ref|ZP_01440588.1| hypothetical protein FP2506_02455 [Fulvimarina pelagi HTCC2506] gi|114536937|gb|EAU40066.1| hypothetical protein FP2506_02455 [Fulvimarina pelagi HTCC2506] Length = 247 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 71/213 (33%), Gaps = 46/213 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQ--KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 + ++ +R + + + V+V+ P L V+ + +R + VGR Sbjct: 74 PAIPSEKIDPQYLRQEVSYPEGSQYEPGTVVVDTPNRFLYLVQPNGMAMRYGIGVGRAG- 132 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 + + +N P W P +I D L + ++ + Sbjct: 133 FSWSGDAYVNSKQHWPKWHPPGEMI--DRKPELEE----YRNGGME-------------- 172 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGC 343 PG N + + + ++ + +H TPE +SGC Sbjct: 173 ---------------PGLTNPLGARALYLFQGGKDTLFRIHGTPEWWTVGT---AASSGC 214 Query: 344 VRV--RNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 +R+ +++IDL + ++ + E + Sbjct: 215 IRMMNQDVIDLYERVPRNAKVVVKQGQERMAAR 247 >gi|119945970|ref|YP_943650.1| peptidoglycan binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864574|gb|ABM04051.1| Peptidoglycan-binding domain 1 protein [Psychromonas ingrahamii 37] Length = 221 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+R++E L + G + A+ +V FQ GL +G VD +T A Sbjct: 28 GMRGKEVKRVQEWLNLQG---VGVVIDSAYGPATTRSVVRFQDESGLSETGEVDDATFNA 84 Query: 165 MNVPVDLRIRQ 175 + P+ ++Q Sbjct: 85 LVKPMRDVLKQ 95 >gi|298291234|ref|YP_003693173.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296927745|gb|ADH88554.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 225 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 53/226 (23%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV F R+ G + + R + ++ L R+ Sbjct: 41 AVSPFASRYAALEDGGFRVPGVPVGEMKERNRRALVDDPTGQLPGTLVVDPKNRF----- 95 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 L V+ LR V VGR + + + P W ++I ++ Sbjct: 96 ----LYLVQENGKALRYGVGVGREGLE-FSGTAEVAHKRAWPRWTPTPNMIARE------ 144 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSR 318 P+ + W G+ N + + + + Sbjct: 145 --PEKYEK-------------------WAGGMAG--------GESNPLGARALYLFKDGK 175 Query: 319 NNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + Y +H T EP +SGC+R+ +++IDL + T Sbjct: 176 DTLYRIHGTNEPWSIGE---AVSSGCIRMMNQDVIDLYQRIPDGTK 218 >gi|17987131|ref|NP_539765.1| carnitine operon oxidoreductase CaiA [Brucella melitensis bv. 1 str. 16M] gi|17982795|gb|AAL52029.1| probable carnitine operon oxidoreductase caia [Brucella melitensis bv. 1 str. 16M] Length = 215 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 69/211 (32%), Gaps = 18/211 (8%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 A V + ++ + N+ ++ K A + N + ++ Sbjct: 8 FVASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAART----NNTAKANKYSIDP 63 Query: 222 -GRVDRQTPILHSRINRIMFNPYW----VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 R T + ++ V + ++ +A+ +Q ++ I E Sbjct: 64 KFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKRE 123 Query: 277 KGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILF 332 + + E ++ + F D G N + S + + N +H T +P Sbjct: 124 WPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTI 183 Query: 333 NNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + ++GC R+ +++DL + T Sbjct: 184 GSS---ASNGCFRMINEDVMDLYDRVTLGTE 211 >gi|84501438|ref|ZP_00999643.1| hypothetical protein OB2597_13773 [Oceanicola batsensis HTCC2597] gi|84390729|gb|EAQ03217.1| hypothetical protein OB2597_13773 [Oceanicola batsensis HTCC2597] Length = 548 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + RL G FDA A++ FQ GL+ +G V +T+ + Sbjct: 494 VLVERRLQQLGF--EPGAPDGRFDAETRRAIRRFQRSRGLEVTGFVTQATMVRLLSS 548 >gi|99080946|ref|YP_613100.1| ErfK/YbiS/YcfS/YnhG [Ruegeria sp. TM1040] gi|99037226|gb|ABF63838.1| ErfK/YbiS/YcfS/YnhG [Ruegeria sp. TM1040] Length = 205 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 51/206 (24%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQV-----NLMRIKKLLE-QKMGLRYVLVNIPAAS 204 L G++ + + +A Q+ V + + + + +G+ +L +I + + Sbjct: 24 LATPGLLRAQSTDAFPASEPAIREQIPVQRNVSSFQQQRWQDHFETLGVGCLLADIESRA 83 Query: 205 LEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L +G+ L V + T +S+I R NP W ++ ++D Sbjct: 84 LHYWGGDGETYLLFPSSVPMSEELTRRGYSKIVRKRENPSWTPTANMRERD--------- 134 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTY 322 P+ R + G N + + + Sbjct: 135 ------------------------------PSLPQRIEGGEPNNPLGTRALYLDWP-AYL 163 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRN 348 +H T + R +SGC+ + N Sbjct: 164 VHGTHDTRKIG---RQSSSGCIGLYN 186 >gi|85714219|ref|ZP_01045207.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] gi|85698666|gb|EAQ36535.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter sp. Nb-311A] Length = 116 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 P+ + G N + + + S +H + EP +SGC+R+RN Sbjct: 47 PDLPRHMEGGPQNPLGARAMYLGSS-LYRIHGSNEPWTIGTN---VSSGCIRMRN 97 >gi|90423688|ref|YP_532058.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris BisB18] gi|90105702|gb|ABD87739.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris BisB18] Length = 289 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 8/88 (9%) Query: 90 SRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + G W P + L LG V L+ L G + +D V F Sbjct: 193 AVGHWVPPAPIVRSEVLKLGADGDEVMALQRALADYGY---GLTPNGCYDPATADVVTAF 249 Query: 146 QMRHG-LDPSGMVDSSTLEAMNVPVDLR 172 Q G+ D+STL +++ ++ R Sbjct: 250 QRHFRPQRVDGIADASTLTTLHMLLESR 277 >gi|306841861|ref|ZP_07474542.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO2] gi|306288054|gb|EFM59454.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO2] Length = 255 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 70/208 (33%), Gaps = 18/208 (8%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV-GR 223 V + ++ + N+ ++ K A + N + ++ R Sbjct: 51 SPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAART----NNTAKANKYSIDPKFR 106 Query: 224 VDRQTPILHSRINRIMFNPY---WVIPRSIIQKDM-MALLRQDPQYLKDNNIHMIDEKGK 279 T + ++ +++ S + +A+ +Q ++ I E + Sbjct: 107 PQDVTFTGYKPGTIVIDPRKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKREWPR 166 Query: 280 EVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNN-TYMHDTPEPILFNNV 335 + E ++ + F D G N + S + +++ +H T +P + Sbjct: 167 WIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSS 226 Query: 336 VRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++GC R+ +++DL + T Sbjct: 227 ---ASNGCFRMINEDVMDLYDRVTLGTE 251 >gi|146295638|ref|YP_001179409.1| carboxyl-terminal protease [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409214|gb|ABP66218.1| carboxyl-terminal protease [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 472 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + V ++RL L G D +A+K FQ + L +G++ Sbjct: 380 ATKKYKKGDMDLEVLAAQQRLYYLRYLSSWTG---KMDDATVNAIKKFQKDNKLSLNGVL 436 Query: 158 DSSTLEAMN 166 D +T + +N Sbjct: 437 DITTQKKLN 445 >gi|126730071|ref|ZP_01745883.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sagittula stellata E-37] gi|126709451|gb|EBA08505.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sagittula stellata E-37] Length = 169 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 46/171 (26%), Gaps = 44/171 (25%) Query: 179 NLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 + + + +LV+I + +L E V + T + I Sbjct: 23 SFRTLNWQPYFSNLTKGAILVDISSRALHYWEENGQYHLYPCSVPLTEDLTRRGRTSIVL 82 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 NP W S+ ++P++ Sbjct: 83 KDPNPDWRPTPSMKV--------RNPEW-------------------------------P 103 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + + +H T + R ++GC+ + N Sbjct: 104 DYVGPGPDNPLGTRAMHLGWQY-YRIHGTHDTRKIG---RRSSNGCIGLYN 150 >gi|321315030|ref|YP_004207317.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|320021304|gb|ADV96290.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] Length = 297 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%) Query: 104 LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 S V +++ L + G+ + AV FQ +GL G+ Sbjct: 227 PYTSGEHVFQVQRALAALYFYPDKGAVNNGIDGIYGPKTADAVARFQSVNGLTADGIYGP 286 Query: 160 STLEAMNV 167 +T + Sbjct: 287 ATKAKIAA 294 >gi|291614448|ref|YP_003524605.1| ErfK/YbiS/YcfS/YnhG family protein [Sideroxydans lithotrophicus ES-1] gi|291584560|gb|ADE12218.1| ErfK/YbiS/YcfS/YnhG family protein [Sideroxydans lithotrophicus ES-1] Length = 159 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 49/173 (28%), Gaps = 28/173 (16%) Query: 198 VNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPILHS----RINRIMFNPYWVIPRSIIQ 252 ++IP +LE ++ GK R V G + I P + + Sbjct: 5 IHIPEQTLELFDDDGKPLRRYRVSTGANGVGEENGSFCTPRGKHVIRARIGAGQPENTVF 64 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 L G++ + + W S + G + M Sbjct: 65 VKRRPTGEIYTPELGRQQ------PGRDWILTRILWLSGCESGYN---RSGSCDTMRRY- 114 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTW 363 Y+H TP+ + GC+R+RN +L + T Sbjct: 115 --------IYIHGTPDGTALGKPG---SHGCIRMRNADMVELFELVKTGTEVE 156 >gi|153812437|ref|ZP_01965105.1| hypothetical protein RUMOBE_02836 [Ruminococcus obeum ATCC 29174] gi|149831599|gb|EDM86686.1| hypothetical protein RUMOBE_02836 [Ruminococcus obeum ATCC 29174] Length = 349 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L++G + V++L+E+L +I+G P G + +V+ FQ GL + Sbjct: 265 PGYDLNIGATGEKVRQLQEQLNVIAGAYPAIPKVGEDGIYGERTSESVRKFQNVFGLPET 324 Query: 155 GMVDSSTLEAMN 166 G+ D T + Sbjct: 325 GITDYPTWYKIQ 336 >gi|34496770|ref|NP_900985.1| hypothetical protein CV_1315 [Chromobacterium violaceum ATCC 12472] gi|34102625|gb|AAQ58990.1| probable phage-related protein [Chromobacterium violaceum ATCC 12472] Length = 264 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L+ G+ V+ L+ RL G + + + E AV Q R GL SG+ S Sbjct: 2 QALNKGSCGQEVRELQTRLNCQG---ARLLVDGWYGSATEQAVAKLQRRAGLVVSGVAGS 58 Query: 160 STLEAMNVPVDLR---IRQLQVNLMRIKKLLE 188 +TL A+ D R L ++ L Sbjct: 59 ATLAALRGQRDPRRLGETDLIAAAESLRLPLP 90 >gi|328880762|emb|CCA54001.1| hypothetical protein SVEN_0714 [Streptomyces venezuelae ATCC 10712] Length = 130 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLR-ERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMR 148 GW +P R G++ V V+ L+ + I G D + F + +K FQ + Sbjct: 49 ANGW-LIPARNFQYGSTGVCVRELQSDVASIMGIDPADWPFVDGVFGTKTDDYIKEFQRQ 107 Query: 149 HGLDPSGMVDSSTLEAM 165 H L G+V +T EA+ Sbjct: 108 HHLIVDGVVGPNTWEAL 124 >gi|262376717|ref|ZP_06069945.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter lwoffii SH145] gi|262308427|gb|EEY89562.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter lwoffii SH145] Length = 177 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYH 367 Y+H TPE + GC+R+RN +L + +D + Sbjct: 119 IYIHGTPETEKMGEP---LSHGCIRMRNPEVAELFDLISEDALVYISEQ 164 >gi|170742570|ref|YP_001771225.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168196844|gb|ACA18791.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 190 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 46/164 (28%), Gaps = 46/164 (28%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 K G V+V+ L + + ++ V VGR D + + P W Sbjct: 53 WNSPYKPGT--VVVSTSQRRLYYILPNQEAIQYGVGVGR-DGFSWSGTKTVTMKKEWPAW 109 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P ++++ P+ G Sbjct: 110 RPPEQMLRRR---------------------------------------PDLPRYMAGGM 130 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N + + + S +H + EP +SGC+R+ N Sbjct: 131 DNPLGARALYLGSS-LYRIHGSNEPETIGA---AVSSGCIRMTN 170 >gi|52082056|ref|YP_080847.1| peptidase S41A, C-terminal protease [Bacillus licheniformis ATCC 14580] gi|52787445|ref|YP_093274.1| YvjB [Bacillus licheniformis ATCC 14580] gi|319647922|ref|ZP_08002140.1| YvjB protein [Bacillus sp. BT1B_CT2] gi|52005267|gb|AAU25209.1| Peptidase S41A, C-terminal protease [Bacillus licheniformis ATCC 14580] gi|52349947|gb|AAU42581.1| YvjB [Bacillus licheniformis ATCC 14580] gi|317390263|gb|EFV71072.1| YvjB protein [Bacillus sp. BT1B_CT2] Length = 479 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 16/99 (16%) Query: 88 ILSRGGWPELP--------------IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 I +G P +P PL ++ ++R + L G + Sbjct: 362 IHKQGIQPTVPVTQPAYFSAGPLQLKEPLKPDMNNNEIKRAQFLLKGLGFVP--GREDGY 419 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 ++ + AV FQ + L +G++D T MN+ ++ + Sbjct: 420 YNESTKKAVMAFQAANKLKQTGIIDQKTANTMNLRIEEK 458 >gi|225433438|ref|XP_002285669.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 372 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L +G+ V+ ++E L G + + +F + E AVK +Q G +G++ Sbjct: 154 KTLRVGSEGEEVRAMQEALQNLGFYSGEEDVEFSSFSSGTERAVKTWQASLGAPENGIMT 213 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRI 183 + LE + + + L+ N+ Sbjct: 214 AELLERLFMEQHIEAAGLKRNIDPK 238 >gi|297741928|emb|CBI33363.3| unnamed protein product [Vitis vinifera] Length = 238 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L +G+ V+ ++E L G + + +F + E AVK +Q G +G++ Sbjct: 20 KTLRVGSEGEEVRAMQEALQNLGFYSGEEDVEFSSFSSGTERAVKTWQASLGAPENGIMT 79 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRI 183 + LE + + + L+ N+ Sbjct: 80 AELLERLFMEQHIEAAGLKRNIDPK 104 >gi|307105888|gb|EFN54135.1| hypothetical protein CHLNCDRAFT_58231 [Chlorella variabilis] Length = 651 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 4/119 (3%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI 99 + ++ AR S + + S Q + +A + ++ E Sbjct: 3 LAVPQRALTVRPRGARTARSHG--RSAVLVRSMLGPYQYKTRVARLRLKGAQVH--EFGD 58 Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G+ V +L+ L G GLS F A++ +Q GL +G+ D Sbjct: 59 RVLQQGSFGDDVMQLQAYLAEQGYFSSDDGLSGYFGDVTGQALQAWQRDQGLRVTGVFD 117 >gi|115373620|ref|ZP_01460915.1| interstitial collagenase (Matrixmetalloproteinase-1) (MMP-1) (Fibroblast collagenase) [Stigmatella aurantiaca DW4/3-1] gi|310824941|ref|YP_003957299.1| peptidase [Stigmatella aurantiaca DW4/3-1] gi|115369323|gb|EAU68263.1| interstitial collagenase (Matrixmetalloproteinase-1) (MMP-1) (Fibroblast collagenase) [Stigmatella aurantiaca DW4/3-1] gi|309398013|gb|ADO75472.1| Peptidase [Stigmatella aurantiaca DW4/3-1] Length = 477 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 16/82 (19%) Query: 103 HLGNSSVSVQRLRERLIISGDLD----------------PSKGLSVAFDAYVESAVKLFQ 146 G+ V+ L G FD +E+ ++ FQ Sbjct: 38 RKGSRGPQVEEAFRHLQAHGYFPNAELAREYPGFRPAVAREPARPDVFDDALEAGLQRFQ 97 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 GL +G +D++T M+ Sbjct: 98 EAQGLPVTGELDAATRALMHRS 119 >gi|296332614|ref|ZP_06875075.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296150532|gb|EFG91420.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 159 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%) Query: 109 VSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 +V++++ L K G+ + AV+ FQ+ +GL G+ T Sbjct: 94 DAVEQIQTALAALHFYPDKKAKNFGIDSYYGPQTADAVRRFQLMYGLSADGIYGPKTKAK 153 Query: 165 MNV 167 + Sbjct: 154 IEA 156 >gi|258653019|ref|YP_003202175.1| peptidoglycan-binding protein [Nakamurella multipartita DSM 44233] gi|258556244|gb|ACV79186.1| Peptidoglycan-binding domain 1 protein [Nakamurella multipartita DSM 44233] Length = 554 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Query: 86 QDILSRGGWPELPIRP-------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + ++ G ++P P L +G V+V+ L+ERL SG + F Sbjct: 140 ETVVDGPGATQVPSNPAAGTHAQLQVGAKGVAVKELQERLNNSGVAGAKLLVDGIFGPKT 199 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ +K FQ + +G+ D +T + Sbjct: 200 DAGLKTFQGTIPVAATGIADPATWTKLET 228 >gi|229154450|ref|ZP_04282567.1| hypothetical protein bcere0010_6470 [Bacillus cereus ATCC 4342] gi|228628848|gb|EEK85558.1| hypothetical protein bcere0010_6470 [Bacillus cereus ATCC 4342] Length = 219 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + +N +H T + ++GC+R+ Sbjct: 33 TKFKNKEYHRKKIAGGAPNNPLGTRWLGL-DKNEYAIHGTNREWTIGSRE---SNGCIRM 88 Query: 347 RN 348 + Sbjct: 89 HD 90 >gi|170747455|ref|YP_001753715.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170653977|gb|ACB23032.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 169 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 45/173 (26%) Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 Q R + V++++ L V +R V VGR +Q I+ Sbjct: 21 QAAQAREIVPFANGVAPGSVVISVSQRKLYLVNGDGTAIRYPVAVGRPGKQ-WFGIKPID 79 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 P W P + + + P Sbjct: 80 GKYVAPAWSPPAEVKR---------------------------------------DNPRL 100 Query: 297 IFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N M + + +H T P + + GC+R+ N Sbjct: 101 PNLIAGGSPHNPMGAAAMTLAGGE-YAIHGTNRPSSVGT---YASYGCIRMYN 149 >gi|169333708|ref|ZP_02860901.1| hypothetical protein ANASTE_00092 [Anaerofustis stercorihominis DSM 17244] gi|169259557|gb|EDS73523.1| hypothetical protein ANASTE_00092 [Anaerofustis stercorihominis DSM 17244] Length = 242 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 96 ELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + PL G+ V++ + +L G + F + SAVK FQ ++ L Sbjct: 172 PVSEYPLIRKGSKGSYVKKAQTQLNKKGGYK--LKVDGIFGSATLSAVKKFQKKNKLVVD 229 Query: 155 GMVDSSTLEAM 165 G+V + T + Sbjct: 230 GIVGAKTWSKL 240 >gi|116624466|ref|YP_826622.1| peptidoglycan binding domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116227628|gb|ABJ86337.1| Peptidoglycan-binding domain 1 protein [Candidatus Solibacter usitatus Ellin6076] Length = 262 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 15/84 (17%) Query: 89 LSRGGWPELPIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + P + G+ SV +++RL ++ D F A + AV+LFQ Sbjct: 3 AASQPAIAFPGHVVKAGSDDKASVLAIQQRLNLTQD--------GVFSAETQEAVQLFQA 54 Query: 148 R------HGLDPSGMVDSSTLEAM 165 R H L G V T A+ Sbjct: 55 RSLDFQDHPLTVDGQVGPMTWAAL 78 >gi|319650587|ref|ZP_08004727.1| carboxyl-terminal processing protease [Bacillus sp. 2_A_57_CT2] gi|317397768|gb|EFV78466.1| carboxyl-terminal processing protease [Bacillus sp. 2_A_57_CT2] Length = 474 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL + ++ V+ +E L G F+ +AVK FQ + L+ SG +D Sbjct: 385 KPLAIDMNNEMVKNAQEILAGLGYAP--GRTDGYFNDSTAAAVKAFQKQKELEASGRIDK 442 Query: 160 STLEAMNVPVDLRIRQLQVNLM 181 T A+ +R+ Q +L Sbjct: 443 KTAAALEQAAIEEMRKEQNDLQ 464 >gi|291004107|ref|ZP_06562080.1| putative muramoyl-pentapeptide carboxypeptidase [Saccharopolyspora erythraea NRRL 2338] Length = 245 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK-----GLSVAFDAYVESAVK 143 + W R L G+S V+ L+ R ++G S + F ++AV Sbjct: 32 AAAYDW----SRELREGHSGADVRELQIR--VAGWAADSAQKTHVAVDGQFGPGTKAAVV 85 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ +GL SG+VDS+T + +N Sbjct: 86 RFQKAYGLAGSGVVDSATQQKLNA 109 >gi|134102502|ref|YP_001108163.1| putative muramoyl-pentapeptide carboxypeptidase [Saccharopolyspora erythraea NRRL 2338] gi|133915125|emb|CAM05238.1| putative muramoyl-pentapeptide carboxypeptidase [Saccharopolyspora erythraea NRRL 2338] Length = 243 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK-----GLSVAFDAYVESAVK 143 + W R L G+S V+ L+ R ++G S + F ++AV Sbjct: 30 AAAYDW----SRELREGHSGADVRELQIR--VAGWAADSAQKTHVAVDGQFGPGTKAAVV 83 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ +GL SG+VDS+T + +N Sbjct: 84 RFQKAYGLAGSGVVDSATQQKLNA 107 >gi|111221344|ref|YP_712138.1| hypothetical protein FRAAL1904 [Frankia alni ACN14a] gi|111148876|emb|CAJ60554.1| hypothetical protein; putative Peptidoglycan-binding domain ErfK/YbiS/YcfS/YnhG [Frankia alni ACN14a] Length = 329 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 300 QDPGKINAMASTKI----------EFYSRNNT-YMHDTPEPILFNNVVRFETSGCVRVRN 348 + F + +H T P L + GC+R+RN Sbjct: 253 RPADPNGPWGPYAFGLSGFSDVITRFNGADGIIGLHGTNRPDLVGTD---ASHGCIRLRN 309 Query: 349 II--DLDVWLLKDTP 361 L L TP Sbjct: 310 ADIEKLAGILPVGTP 324 >gi|84495100|ref|ZP_00994219.1| hypothetical protein JNB_09879 [Janibacter sp. HTCC2649] gi|84384593|gb|EAQ00473.1| hypothetical protein JNB_09879 [Janibacter sp. HTCC2649] Length = 282 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + + WP L + + LG+ +V+ ++ + + +F ++AV+ +Q Sbjct: 207 VGQLDWPALIV-TVKLGDKGEAVKAVQT------LVPGGLTVDGSFGPSTDAAVRNYQTM 259 Query: 149 HGLDPSGMVDSSTL 162 G+V +T Sbjct: 260 FSPPSDGIVGPNTW 273 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G S +V ++ L G + +F ++AV FQ GL G+V Sbjct: 7 PWKTASQGAVSQAVSGIQYLLKAHG---HAVATDGSFGPGTKAAVIAFQKAKGLPADGVV 63 Query: 158 DSSTLEAMNV 167 + T + + + Sbjct: 64 GTVTWQKLVI 73 Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 13/133 (9%) Query: 81 AIAFYQDILSRGGWPELPIRPLHL----GNSSVSVQRLRE--RLIISGDLDPSKGLSVAF 134 A + + + G + + L + G++ +V+ +++ L GD + ++ Sbjct: 50 AFQKAKGLPADGVVGTVTWQKLVIATSSGSAGDAVRAVQQFGLLSSPGD--EPLVVDGSY 107 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-PVDLR----IRQLQVNLMRIKKLLEQ 189 + VK Q GL G ++ R ++Q + L Q Sbjct: 108 GPTTTARVKDLQRSWGLTMDGAAGQEAWSFLSTFAPGPRPWPLVKQGATQATNWRVLAAQ 167 Query: 190 KMGLRYVLVNIPA 202 + + Sbjct: 168 HLLRAHGATITAD 180 >gi|260427862|ref|ZP_05781841.1| ErfK/YbiS/YcfS/YnhG family protein [Citreicella sp. SE45] gi|260422354|gb|EEX15605.1| ErfK/YbiS/YcfS/YnhG family protein [Citreicella sp. SE45] Length = 184 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 47/186 (25%), Gaps = 47/186 (25%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP 229 R + + + +G ++ + + +L +G V D T Sbjct: 32 QRRNISSFAMQDWRDHF-ETLGKGAIVADTASRALHFWSGDGSDYRVYPTSVPLTDELTK 90 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 ++ I R P W S +++ DW Sbjct: 91 RGYTEIVRKKVGPSWTPTASQMERYP-------------------------------DWK 119 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 PG N + + + +H T + R + GC+ + N Sbjct: 120 PIG---------PGPDNPLGTHAMYLGWPAYI-IHGTHDTRKIG---RRSSDGCIGLYN- 165 Query: 350 IDLDVW 355 + Sbjct: 166 EKIAEL 171 >gi|118595120|ref|ZP_01552467.1| ErfK/YbiS/YcfS/YnhG [Methylophilales bacterium HTCC2181] gi|118440898|gb|EAV47525.1| ErfK/YbiS/YcfS/YnhG [Methylophilales bacterium HTCC2181] Length = 160 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 49/170 (28%), Gaps = 45/170 (26%) Query: 202 AASLEAVENGKVGLRSTVIVG-------RVDRQTPILHSRINRIM-FNPYWV--IPRSII 251 + L + G++ V + +TP+ + I ++ N I Sbjct: 11 SQKLSLFQEGELVSSYKVSTALKGVGQEKNTNKTPLGNHIIRAMIGRNLPIYAVIKARRY 70 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI---NAM 308 ++ DP VDW GK N + Sbjct: 71 TNEIWTKELDDPS-------------------ITVDW-----ILSRVIWLSGKDLGRNRL 106 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 + + Y+H T E L + GC+R+ ++I+L + Sbjct: 107 GNVDTM---QRYIYIHGTNEEHLLGTPS---SHGCIRMSNEDVIELFDLV 150 >gi|298290899|ref|YP_003692838.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296927410|gb|ADH88219.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 191 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 51/185 (27%), Gaps = 46/185 (24%) Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 ++ R K +++N L V+ LR + VGR D + R Sbjct: 46 SIRRTVVPYNGKYAPGTIIINTSERRLYLVQPNGSALRYGIGVGR-DGFRWSGVKTVTRK 104 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 P W P ++Q+ P+ Sbjct: 105 AEWPSWTPPAQMLQRR---------------------------------------PDLPR 125 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 G N + + + +H + EP +SGC R+ N + DL + Sbjct: 126 YMPGGIDNPLGARALYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTNDDVTDLYERV 181 Query: 357 LKDTP 361 T Sbjct: 182 RVGTK 186 >gi|111224313|ref|YP_715107.1| hypothetical protein FRAAL4924 [Frankia alni ACN14a] gi|111151845|emb|CAJ63565.1| hypothetical protein; Putative peptidoglycan binding domain [Frankia alni ACN14a] Length = 200 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VQ+++++L G + F VK +Q++HGL G+V T ++ + Sbjct: 146 DVQQIQQKLANLGY---PIQVDGQFGYQTNHMVKDYQLKHGLLVDGVVGPQTRASLGI 200 >gi|320354090|ref|YP_004195429.1| peptidoglycan-binding domain 1 protein [Desulfobulbus propionicus DSM 2032] gi|320122592|gb|ADW18138.1| Peptidoglycan-binding domain 1 protein [Desulfobulbus propionicus DSM 2032] Length = 313 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM- 165 V++++ L +G + + + E A+K +Q G++ +G + + T ++ Sbjct: 17 RGEVVRQIQVALRAAG--ADPEEIDGIYGGDTEKALKAYQQAKGMESNGKITTETWSSLM 74 Query: 166 -NVPVDLRIRQLQVN 179 P L R LQ+ Sbjct: 75 GEAPPSLFARCLQLT 89 >gi|148252294|ref|YP_001236879.1| ErfK/YbiS/YcfS/YnhG domain-containing protein [Bradyrhizobium sp. BTAi1] gi|146404467|gb|ABQ32973.1| putative exported protein of unknown function with ErfK/YbiS/YcfS/YnhG domain [Bradyrhizobium sp. BTAi1] Length = 197 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 53/185 (28%), Gaps = 19/185 (10%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + G + LV L R V+ R P ++ + Y V P Sbjct: 28 SEDPGDQPGLVADDGYEL------DPEWRKQVVYYR--TTEPPGTIIVSTSERHLYLVQP 79 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + + + R + + I +K + P G N Sbjct: 80 GGRAIRYGIGVGRDG---FQWQGLLSITKKAEWPDWTPPPEMIQRQPYLPRFMAGGPGNP 136 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWS 364 + + + Y +H T +P +SGC R+ ++ DL + T Sbjct: 137 LGARAMYL--GTTVYRIHGTNQPWTIGTK---ISSGCFRLVNTDVADLYDRVPVGTKVVV 191 Query: 365 RYHIE 369 + E Sbjct: 192 KQKPE 196 >gi|291547836|emb|CBL20944.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus sp. SR1/5] Length = 424 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G + VQ+++E+L I PS + + ++VK FQ GL S Sbjct: 340 PGYDLTIGVTGEKVQQIQEQLNAIAKAYPAIPSVTVDGIYGPATAASVKKFQNIFGLPAS 399 Query: 155 GMVDSSTLEAMN 166 G+VD T + Sbjct: 400 GVVDYPTWYKIQ 411 >gi|282911000|ref|ZP_06318802.1| peptidase [Staphylococcus aureus subsp. aureus WBG10049] gi|282324695|gb|EFB55005.1| peptidase [Staphylococcus aureus subsp. aureus WBG10049] Length = 496 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFIVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENLVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|163732909|ref|ZP_02140353.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] gi|161393444|gb|EDQ17769.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] Length = 227 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 42/160 (26%), Gaps = 27/160 (16%) Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 + P + + ++P I + L Sbjct: 43 WDARVTPANYNPATTNPWGLHPRF---LPVRVEANSGLVPGDIHVDAVARYLYHVQGDGT 99 Query: 268 DNNIHMIDEKGKEVFVE------EVDWNSPEPPNFIFRQDP------------GKINAMA 309 + +G + W P + R+DP G N + Sbjct: 100 AMRYGVAIARGNLYEPGVFTIRRKARWPKWTPTADMIRRDPELYTEFADGMPGGPGNPLG 159 Query: 310 STKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + + +R+ +H TP P + +SGCVR+ Sbjct: 160 ARALYLYEGNRDTYLRIHGTPSPRSIGSR---ASSGCVRM 196 >gi|110803522|ref|YP_699813.1| spore cortex-lytic enzyme SleC [Clostridium perfringens SM101] gi|110684023|gb|ABG87393.1| spore cortex-lytic enzyme SleC [Clostridium perfringens SM101] gi|226844841|gb|ACO87301.1| SleC [Clostridium perfringens] gi|226844845|gb|ACO87303.1| SleC [Clostridium perfringens] Length = 438 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 5/108 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + AVK FQ L + Sbjct: 329 PGYTLKFGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFDLPQT 388 Query: 155 GMVDSSTLEAMN--VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 G VD +T ++ +I +L+ ++ + M R + I Sbjct: 389 GEVDYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTIMDRRENVPKI 436 >gi|47564877|ref|ZP_00235921.1| putative peptidoglycan binding domain protein [Bacillus cereus G9241] gi|47558250|gb|EAL16574.1| putative peptidoglycan binding domain protein [Bacillus cereus G9241] Length = 741 Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 15/163 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 I L++ + D + + + N + + G + T Sbjct: 139 IFKAFLTMDAYRLTPGG-DAKVRQIQQDLNNKYYKTSGVQPTDG------HYQRGTNKAL 191 Query: 79 EKAIAFYQDILSRGGWPEL-PIRP-----LHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + I + + P L +G+S V + L +G S S Sbjct: 192 VYGLQTEMGIAAGSQTGSIGPATKNGLPILKVGSSGRFVTLFQYALYFNGH--DSGSFST 249 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 ++ VESAVK FQ L G+ + ST + V R+ Sbjct: 250 TYNTNVESAVKKFQGFTLLPQDGVANKSTWLSALVSTGDPDRK 292 >gi|218677968|ref|ZP_03525865.1| hypothetical protein RetlC8_03512 [Rhizobium etli CIAT 894] Length = 124 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%) Query: 298 FRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 F + N + + + H T EP +SGC+R+ N +D Sbjct: 35 FVEGGSPKNPLGPRAMYLHRDGVDTGYRFHGTLEPWSIGKD---ASSGCIRMFNEDAID- 90 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 L + P + + + + + +++ PV Sbjct: 91 -LYQRCPIGTAVQVLPHIADQAESATQVSQTTPV 123 >gi|158314338|ref|YP_001506846.1| peptidoglycan binding domain-containing protein [Frankia sp. EAN1pec] gi|158109743|gb|ABW11940.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EAN1pec] Length = 256 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 98 PIRPLHLGNSSVS--VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + LG V V +++RL G + F V FQ ++GL P G Sbjct: 188 SSGYMRLGVEGVRWDVALVQKRLADIGY---PITVDGRFGPQTNHMVVDFQKKNGLVPDG 244 Query: 156 MVDSST 161 +V T Sbjct: 245 VVGPLT 250 >gi|332706811|ref|ZP_08426872.1| N-acetylmuramoyl-L-alanine amidase [Lyngbya majuscula 3L] gi|332354695|gb|EGJ34174.1| N-acetylmuramoyl-L-alanine amidase [Lyngbya majuscula 3L] Length = 306 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 17/106 (16%) Query: 69 IISKETIAQTE--KAIA--FYQDILSRGGWPEL----PIRPLHLG-NSSVSVQRLRERLI 119 + + TIA + +AI I W + L +V+ L+ R Sbjct: 207 SLDQATIAAIKTFQAIVGINQTGIGDSTTWKTINQILEQPILRPNHAGGTTVKYLQRR-- 264 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F + SAV FQ + GL G+V + T + Sbjct: 265 ------VGTQADGIFGSGTASAVIRFQKQQGLTADGIVGAQTWSQL 304 >gi|325292222|ref|YP_004278086.1| hypothetical protein AGROH133_04588 [Agrobacterium sp. H13-3] gi|325060075|gb|ADY63766.1| hypothetical protein AGROH133_04588 [Agrobacterium sp. H13-3] Length = 302 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 97/322 (30%), Gaps = 70/322 (21%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQ 112 D D+ + P+ + +++ + PELP + G S Sbjct: 32 DTSRMNPDVFVQETAPVFNFNSVSSNRQ--------------PELPPQ---PGQLSTRPP 74 Query: 113 RL-RERLIISGDLDPSKGLSVAFDAYVESA-VKLFQ---MRHGLDPSG----MVDSSTLE 163 L R R P V+ V Q M +GL S ++ + Sbjct: 75 DLFRTRFHQE--YGPPVRGQGLSAPQVQGLNVPQAQGQAMAYGLPVSNPLHRVMYGPIRD 132 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + ++ +R + + ++V+ L V+ G +R V +GR Sbjct: 133 DGRSLPAIPYGRIDPRYLRQEVSYQTAEAPGTIVVDTKQHFLYLVQPGGKAIRYGVGLGR 192 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 D +I P W P ++++ Sbjct: 193 -DGYAWSGRGKIQWKAKWPRWTPPDEMVRRQ----------------------------P 223 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFET 340 E ++ PG N + + + ++ Y +H TP+ + Sbjct: 224 ELTSISAANGGMT-----PGLNNPLGARALYIFKDGKDTLYRVHGTPDWQSVGK---ATS 275 Query: 341 SGCVRV--RNIIDLDVWLLKDT 360 SGCVR+ +++IDL + K Sbjct: 276 SGCVRMLNQDVIDLYERVPKGA 297 >gi|297563587|ref|YP_003682561.1| ErfK/YbiS/YcfS/YnhG family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848035|gb|ADH70055.1| ErfK/YbiS/YcfS/YnhG family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 249 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 25/104 (24%), Gaps = 20/104 (19%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS-----------RNNTYMH 324 G+ Q P +H Sbjct: 153 GTGEGETPTPEGRYYFTE----LLQPPDPEGPYGVYAFGLSGFSETLETFAGGPGQLAVH 208 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 T + R + GCVRV N D+ W+ ++ P + I Sbjct: 209 GTNDEDALG---REISHGCVRVSN-EDI-TWMAENLPIGTPVEI 247 >gi|168044978|ref|XP_001774956.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673703|gb|EDQ60222.1| predicted protein [Physcomitrella patens subsp. patens] Length = 294 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGM 156 LG + L+ L+ G + + S FD+ + A++ +Q GL +G Sbjct: 11 KLGEVRAGMANLKMYLLQFGYISSADAPPAGSSFSEEFDSITQKAIQNYQRSFGLPVTGN 70 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNL 180 +D +TL M +P R + L Sbjct: 71 LDLATLTQMIIPRCGREDVINGTL 94 >gi|16078346|ref|NP_389164.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221309139|ref|ZP_03590986.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221313466|ref|ZP_03595271.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318388|ref|ZP_03599682.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322662|ref|ZP_03603956.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. SMY] gi|731171|sp|P39800|XLYA_BACSU RecName: Full=N-acetylmuramoyl-L-alanine amidase XlyA; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|496176|gb|AAA22645.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|535797|emb|CAA85403.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis] gi|1225965|emb|CAA94049.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|2633635|emb|CAB13138.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] Length = 297 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 104 LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 S V +++ L + G+ + AV FQ +GL G+ Sbjct: 227 PYTSGEHVFQVQRALAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGP 286 Query: 160 STLEAMNV 167 +T E + Sbjct: 287 ATKEKIAA 294 >gi|27382343|ref|NP_773872.1| hypothetical protein blr7232 [Bradyrhizobium japonicum USDA 110] gi|27355514|dbj|BAC52497.1| blr7232 [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 41/167 (24%), Gaps = 44/167 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R ++VN L V LR + VGR D RI Sbjct: 62 RTTVNYSGNYAPGTIVVNTSERRLYLVLQNGQALRYGIGVGR-DGFRWGGVHRITAKKEW 120 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++ + P+ Sbjct: 121 PDWTPPSQMLARR---------------------------------------PDLPRHMK 141 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + +H + EP +SGC R+ N Sbjct: 142 GGIENPLGARAMYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMTN 184 >gi|85859357|ref|YP_461559.1| putative peptidoglycan binding protein [Syntrophus aciditrophicus SB] gi|85722448|gb|ABC77391.1| putative peptidoglycan binding protein [Syntrophus aciditrophicus SB] Length = 300 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 1/66 (1%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + Q L+ L G DP + F AV FQ G+ G +T A+ Sbjct: 234 DKGDKTQWLQNALNQLG-ADPKLTVDGRFGPATRRAVMKFQTTAGIPADGKAGPATEAAI 292 Query: 166 NVPVDL 171 + Sbjct: 293 KEKLAK 298 >gi|319892421|ref|YP_004149296.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus pseudintermedius HKU10-03] gi|317162117|gb|ADV05660.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus pseudintermedius HKU10-03] Length = 509 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 9/80 (11%) Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y++I +P + H G V+ ++ L G + ++A + A Sbjct: 410 ADYENI------SVIPTKTTYHQGQEDKHVKSIKIGLKALGY--DVGTIDEHYNAQLTIA 461 Query: 142 VKLFQMRHGLDPSGMVDSST 161 VK FQ ++ L +GM + T Sbjct: 462 VKQFQQKNDLTANGMFNKET 481 >gi|227834354|ref|YP_002836061.1| putative hydrolase [Corynebacterium aurimucosum ATCC 700975] gi|262183086|ref|ZP_06042507.1| putative hydrolase [Corynebacterium aurimucosum ATCC 700975] gi|227455370|gb|ACP34123.1| putative hydrolase [Corynebacterium aurimucosum ATCC 700975] Length = 394 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLD------------PSKGLSVAFDAYVESAVKLFQM 147 R L +G+ SV V R L G + FD+ + +K FQ Sbjct: 3 RVLRVGDQSVRVAEARATLARLGLMTDYQGTLSDWKKQKYSEADKHFDSELAEVLKAFQQ 62 Query: 148 RHGLDPSGMVDSSTLEAMNV 167 G+ PSG +D TL + Sbjct: 63 SRGIVPSGDIDELTLRELRQ 82 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 18/118 (15%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH--------------LG--NSS 108 S+ +A+ KA + I+ G EL +R L G Sbjct: 43 SEADKHFDSELAEVLKAFQQSRGIVPSGDIDELTLRELRQASYTLGARVLAYEPGNVQVG 102 Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V +L+++L G + F A +A+ +Q+ GL G+ T+ A+N Sbjct: 103 DDVSQLQQQLQELGFYQER--IDGNFGARTYAALAEYQLNSGLRSDGICGPETINALN 158 >gi|308071058|ref|YP_003872663.1| Periplasmic protease [Paenibacillus polymyxa E681] gi|305860337|gb|ADM72125.1| Periplasmic protease [Paenibacillus polymyxa E681] Length = 488 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 8/96 (8%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +S V+ + L G FD ES+V FQ + L S Sbjct: 386 PLNKEKSLKYNMNSSDVKNAQIILQGLGY--RPGREDGYFDKVTESSVIAFQKQAKLTAS 443 Query: 155 GMVDSSTLEAMNVPVDLRIR------QLQVNLMRIK 184 G++D+ T AM + +IR QL+ + I+ Sbjct: 444 GIIDAKTAAAMEAKLIKKIRDPKNDNQLKQGIEEIR 479 >gi|150397906|ref|YP_001328373.1| lytic murein transglycosylase [Sinorhizobium medicae WSM419] gi|150029421|gb|ABR61538.1| lytic murein transglycosylase [Sinorhizobium medicae WSM419] Length = 405 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 9/93 (9%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + IA Y + R WP P L + L+ RL G D + F Sbjct: 322 VGLLADQIAGYAGMQQR--WPR-PDGSLDI----SEKFELQNRLKELGYYDGE--VDGNF 372 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + ++A++ FQ ++GL P G L A+ Sbjct: 373 GSGSKAAIEAFQAQNGLKPDGQPTQHLLRALRR 405 >gi|91974955|ref|YP_567614.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91681411|gb|ABE37713.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 175 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 45/163 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++V L V +R V VG+ ++ ++I+ NP W Sbjct: 37 FRGDYSPGTIVVKTNERRLYLVVEPGQAVRYPVGVGKAGKR-WEGVTKIDGKYRNPAWSP 95 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KI 305 P + + + P G Sbjct: 96 PADVKR---------------------------------------DNPAIPDVIPGGTPE 116 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N M + +H T P F + GC+R+ N Sbjct: 117 NPMGVAAMTLAGGE-YAIHGTNRPNSVG---GFVSYGCIRMLN 155 >gi|316931817|ref|YP_004106799.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315599531|gb|ADU42066.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 175 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 41/163 (25%), Gaps = 45/163 (27%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++V L V +R V VG+ +Q ++I+ NP W Sbjct: 37 FRGDYSPGTIVVRTAERRLYLVVEPGHAVRYPVGVGKAGKQ-WAGITKIDGKYRNPAWAP 95 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KI 305 P + + + P G Sbjct: 96 PADVKR---------------------------------------DVPAIPDVIPGGSPA 116 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N M + +H T P F + GC+R+ N Sbjct: 117 NPMGVAAMTLEGGE-YAIHGTNRPQSIG---GFVSYGCIRMLN 155 >gi|255767329|ref|YP_003097723.1| hypothetical protein BSU14071 [Bacillus subtilis subsp. subtilis str. 168] gi|269849598|sp|O34320|FADG_BACSU RecName: Full=Uncharacterized protein fadG gi|225184956|emb|CAX52614.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] Length = 576 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 27/177 (15%) Query: 18 LILPMGLSLVEKPIHASVLDEIIN----------ESYHSIVNDRFDNFLARVDMGIDSDI 67 + L MGLS + + V ++N + +N + + Sbjct: 113 MQLHMGLSKTDGVVTPKVFKALLNMDSYILLNGASEKVRSIQQWLNNKYYNRENF--YFM 170 Query: 68 P---IISKETIAQTEKAIAFYQDI---LSRGGWPELPIR---PLHLGNSSVS---VQRLR 115 P + S++T AI + + + ++ G + R L +G + + + Sbjct: 171 PCDGLYSRDTQKSLVYAIQYEEGLSDSIANGNFGPTTQRLIPVLRIGETDEKNSFIHLFQ 230 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LI +G + + V S VK FQ L SG D T ++ V Sbjct: 231 AALIFNGY---NVPFDGVYSESVRSKVKAFQSFAKLQQSGTADFQTWASLLVSTGDP 284 Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAM 165 V+ ++ L G GL+ F + A+ Q+ GL G+V +A+ Sbjct: 81 VKIIQGALYCKGY--GPGGLTGTFGQGTKEAIAEMQLHMGLSKTDGVVTPKVFKAL 134 >gi|221309276|ref|ZP_03591123.1| hypothetical protein Bsubs1_07816 [Bacillus subtilis subsp. subtilis str. 168] gi|221318525|ref|ZP_03599819.1| hypothetical protein BsubsJ_07686 [Bacillus subtilis subsp. subtilis str. JH642] Length = 786 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 27/177 (15%) Query: 18 LILPMGLSLVEKPIHASVLDEIIN----------ESYHSIVNDRFDNFLARVDMGIDSDI 67 + L MGLS + + V ++N + +N + + Sbjct: 128 MQLHMGLSKTDGVVTPKVFKALLNMDSYILLNGASEKVRSIQQWLNNKYYNRENF--YFM 185 Query: 68 P---IISKETIAQTEKAIAFYQDI---LSRGGWPELPIR---PLHLGNSSVS---VQRLR 115 P + S++T AI + + + ++ G + R L +G + + + Sbjct: 186 PCDGLYSRDTQKSLVYAIQYEEGLSDSIANGNFGPTTQRLIPVLRIGETDEKNSFIHLFQ 245 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LI +G + + V S VK FQ L SG D T ++ V Sbjct: 246 AALIFNGY---NVPFDGVYSESVRSKVKAFQSFAKLQQSGTADFQTWASLLVSTGDP 299 Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAM 165 V+ ++ L G GL+ F + A+ Q+ GL G+V +A+ Sbjct: 96 VKIIQGALYCKGY--GPGGLTGTFGQGTKEAIAEMQLHMGLSKTDGVVTPKVFKAL 149 >gi|119775164|ref|YP_927904.1| membrane-bound lytic transglycolase-like protein [Shewanella amazonensis SB2B] gi|119767664|gb|ABM00235.1| membrane-bound lytic transglycolase-related protein [Shewanella amazonensis SB2B] Length = 401 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G P PL + ++ ++++LI G + +A++ FQ R+ Sbjct: 319 NGAKPLKVAPPLQPRRTRDGLKAMQQKLIELGY--DIGAADGIIGSKTSAAIRDFQRRNK 376 Query: 151 LDPSGMVDSSTLEAMNVPVD 170 L P G D +TL A+ + V Sbjct: 377 LVPDGFADDATLNALGLDVA 396 >gi|2632228|emb|CAA10870.1| YkuG protein [Bacillus subtilis] Length = 760 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 27/177 (15%) Query: 18 LILPMGLSLVEKPIHASVLDEIIN----------ESYHSIVNDRFDNFLARVDMGIDSDI 67 + L MGLS + + V ++N + +N + + Sbjct: 113 MQLHMGLSKTDGVVTPKVFKALLNMDSYILLNGASEKVRSIQQWLNNKYYNRENF--YFM 170 Query: 68 P---IISKETIAQTEKAIAFYQDI---LSRGGWPELPIR---PLHLGNSSVS---VQRLR 115 P + S++T AI + + + ++ G + R L +G + + + Sbjct: 171 PCDGLYSRDTQKSLVYAIQYEEGLSDSIANGNFGPTTQRLIPVLRIGETDEKNSFIHLFQ 230 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LI +G + + V S VK FQ L SG D T ++ V Sbjct: 231 AALIFNGY---NVPFDGVYSESVRSKVKAFQSFAKLQQSGTADFQTWASLLVSTGDP 284 Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAM 165 V+ ++ L G GL+ F + A+ Q+ GL G+V +A+ Sbjct: 81 VKIIQGALYCKGY--GPGGLTGTFGQGTKEAIAEMQLHMGLSKTDGVVTPKVFKAL 134 >gi|320095837|ref|ZP_08027475.1| choline binding protein A [Actinomyces sp. oral taxon 178 str. F0338] gi|319977226|gb|EFW08931.1| choline binding protein A [Actinomyces sp. oral taxon 178 str. F0338] Length = 416 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G + + V ++ RL I + + DA +AVK FQ R GL +G+V Sbjct: 192 STNTLTWGMNGIKVMIVQRRLGIWHTMKLASV-----DASFVTAVKNFQWRAGLSQTGVV 246 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIK 184 D T AM I Q Q + + Sbjct: 247 DEQTWNAMGTGWPWTIDQYQAQPVPLT 273 >gi|104782728|ref|YP_609226.1| hypothetical protein PSEEN3719 [Pseudomonas entomophila L48] gi|95111715|emb|CAK16439.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 174 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 Y+H TP+ + GCVR+RN LD L P R I+E Sbjct: 118 IYLHGTPDTEPMGI---ALSHGCVRLRNADLLD--LFDRVPAGCRVRIDEA 163 >gi|154509521|ref|ZP_02045163.1| hypothetical protein ACTODO_02053 [Actinomyces odontolyticus ATCC 17982] gi|153799155|gb|EDN81575.1| hypothetical protein ACTODO_02053 [Actinomyces odontolyticus ATCC 17982] Length = 513 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G + V+ + RL + S L+ DA +AVK FQ R GL +G+V Sbjct: 289 ATNTLTWGMNGTKVRIAQVRLGLW----HSNKLASV-DAPFVAAVKNFQQRAGLPVTGVV 343 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIK 184 D +T +AM+ + Q Q + + Sbjct: 344 DKATWDAMDTGYPWTVDQYQATPLPLT 370 >gi|289665239|ref|ZP_06486820.1| hypothetical protein XcampvN_19755 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 212 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 114 LRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ +L G + F A + AV+ FQ HGL G+V T A+ Sbjct: 4 LQSQLAQLGVVGRDGKPLHADGDFGANTKYAVEQFQREHGLHVDGVVGRQTQAALGQ 60 >gi|227824066|ref|YP_002828039.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium fredii NGR234] gi|227343068|gb|ACP27286.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium fredii NGR234] Length = 224 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 47/187 (25%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L + K +R V VGR + + I+R P W P + ++ L Sbjct: 81 LYLIMENKTAIRYGVGVGREGFK-WYGRATIDRKSLWPRWTPPPEMRERH--PEL----- 132 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF---YSRNNT 321 E VD N + + Sbjct: 133 ------------------PESVD-------------GGSPKNPLGPRAMYLLRDGVDTGY 161 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 +H T EP +SGC+R+ N +D L + P + + + + + + Sbjct: 162 RLHGTLEPGSIGKD---ASSGCIRMFNEDAID--LYQRCPIGTAVQVLPHIADQAESAAE 216 Query: 382 LATEVPV 388 ++ PV Sbjct: 217 VSQATPV 223 >gi|188586802|ref|YP_001918347.1| carboxyl-terminal protease [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351489|gb|ACB85759.1| carboxyl-terminal protease [Natranaerobius thermophilus JW/NM-WN-LF] Length = 476 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 21/125 (16%) Query: 77 QTEKAIAFY-----QDILSRGGWPEL---PIRPLHL-----------GNSSVSVQRLRER 117 + +A Y +DI G P++ P + L L G+ V+ L+ Sbjct: 343 ALQYTMAKYQTPDGRDIHEEGLNPDVEIDPPKILELTRQPISTDLSMGDEGEEVETLQSI 402 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L FD + A++ FQ G+ +G ++ + + ++ + + Sbjct: 403 LKELDYFTEEVT--GEFDEHTRDALEKFQQARGISATGEMEDMVIREFHDMIEEYLEEDD 460 Query: 178 VNLMR 182 L R Sbjct: 461 EKLER 465 >gi|86751039|ref|YP_487535.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86574067|gb|ABD08624.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 193 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 45/161 (27%), Gaps = 46/161 (28%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ L V LR + VGR D RI P W P ++++ Sbjct: 65 IVISTSERRLYLVGADGTALRYGIGVGR-DGFRWSGTHRITAKKEWPSWTPPAQMLRRR- 122 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P+ G+ N + + + Sbjct: 123 --------------------------------------PDLPRHMAGGEDNPLGARAMYL 144 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 +H + EP +SGC R+ N + DL Sbjct: 145 G-STLYRIHGSNEPETIGQ---AVSSGCFRMTNEDVKDLYE 181 >gi|17229353|ref|NP_485901.1| hypothetical protein all1861 [Nostoc sp. PCC 7120] gi|17130951|dbj|BAB73560.1| all1861 [Nostoc sp. PCC 7120] Length = 269 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG+ +V ++ + + + + A V+ FQ +GL G+V Sbjct: 139 TLRLGSRGQAVSAVQRAIGVE--------PTGYYGAVTARRVREFQANNGLRADGIVGPQ 190 Query: 161 TLEAM 165 T A+ Sbjct: 191 TRNAL 195 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 12/92 (13%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 QT A+ ++ P L G+ +V ++ L + + + Sbjct: 190 QTRNALFR----GNQNQPPTGGPVTLGFGSRGSAVSEVQRALGVE--------PTGYYGT 237 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ FQ +GL G+V T A+ Sbjct: 238 VTVRRVREFQANNGLRVDGVVGPETRSALFRS 269 >gi|83943599|ref|ZP_00956058.1| hypothetical protein EE36_01820 [Sulfitobacter sp. EE-36] gi|83845831|gb|EAP83709.1| hypothetical protein EE36_01820 [Sulfitobacter sp. EE-36] Length = 222 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 51/192 (26%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 D +T V R ++ N G + V+ A L +++ +R Sbjct: 48 DPATTNPWGVAPRFLPRLVEAN-------PGLTPGDIH--VDAVARYLYHIQDNGTAMRY 98 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V + R D P I R P W +++I R+DP+ + + D Sbjct: 99 GVAIARGDLYEP-GTYSIKRKAKWPTWTPTQNMI--------RRDPELYEQH----ADG- 144 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNN 334 D G N + S + +R+ +H +P P Sbjct: 145 ----------------------MDAGPQNPLGSRALYLFVGNRDTYLRIHGSPNPQSIG- 181 Query: 335 VVRFETSGCVRV 346 R +SGCVR+ Sbjct: 182 -GRA-SSGCVRM 191 >gi|116072872|ref|ZP_01470137.1| hypothetical protein BL107_10197 [Synechococcus sp. BL107] gi|116064398|gb|EAU70159.1| hypothetical protein BL107_10197 [Synechococcus sp. BL107] Length = 166 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 51/179 (28%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R ++L +L+++ + + +G++ V +G TP I N Sbjct: 25 RAEELALNAPSPSRILLDLQRREISVMLDGRMHGSWPVAIGDPKTPTPQGEFSILTKEMN 84 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P +V +S +K++ Sbjct: 85 PIYVSEKSGQRKEL---------------------------------------------- 98 Query: 302 PGKINAMASTKIEFY-SRNNT-YMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 G + + + F+ + +H TP P + GCVR+ N + L + Sbjct: 99 SGPTSPIGDRYLVFHRNGRGEFGIHGTPWPHWV-KTRAAVSLGCVRMLNVHVRQLFDLV 156 >gi|307273110|ref|ZP_07554356.1| peptidase [Enterococcus faecalis TX0855] gi|306510095|gb|EFM79119.1| peptidase [Enterococcus faecalis TX0855] Length = 477 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 388 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLLVTGEID 445 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 446 NETATKIEATLGKLI 460 >gi|256965014|ref|ZP_05569185.1| carboxyl-terminal protease [Enterococcus faecalis HIP11704] gi|256955510|gb|EEU72142.1| carboxyl-terminal protease [Enterococcus faecalis HIP11704] Length = 480 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D Sbjct: 391 DKTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLLVTGEID 448 Query: 159 SSTLEAMNVPVDLRI 173 + T + + I Sbjct: 449 NETATKIEATLGKLI 463 >gi|302532770|ref|ZP_07285112.1| predicted protein [Streptomyces sp. C] gi|302441665|gb|EFL13481.1| predicted protein [Streptomyces sp. C] Length = 138 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V L+ L LD + GL + A E+AV+ Q R+GL G+ ST Sbjct: 62 GSSGDHVLALQHALQGCQGLD-TGGLDGIYGAKTEAAVRTLQSRNGLSVDGVYGPSTRNV 120 Query: 165 MN 166 ++ Sbjct: 121 IS 122 >gi|251799692|ref|YP_003014423.1| carboxyl-terminal protease [Paenibacillus sp. JDR-2] gi|247547318|gb|ACT04337.1| carboxyl-terminal protease [Paenibacillus sp. JDR-2] Length = 486 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L ++ + L G ++A E AVK FQ GL +G +D Sbjct: 395 TETLRKDMLGEQIRNAQVMLSGLGYATQR--EDGYYNASTEQAVKDFQNASGLPVTGEID 452 Query: 159 SSTLEAMNVPVDLRIR 174 + T ++ V I+ Sbjct: 453 TKTAASLEQAVVKWIK 468 >gi|114564147|ref|YP_751661.1| peptidoglycan binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335440|gb|ABI72822.1| Peptidoglycan-binding domain 1 protein [Shewanella frigidimarina NCIMB 400] Length = 557 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W I P +G SS VQ L L + L FD+ +E + FQ +HGL Sbjct: 468 WQPDSILPREIGQSSSLAQVQWLENSLALVN--KRRARLLTQFDSELEQQLMTFQRQHGL 525 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 P G+ + TL +N+ + + +L + +R Sbjct: 526 KPDGIAGNQTLVQLNLYLSQQGPRLSASEVR 556 >gi|319405258|emb|CBI78869.1| conserved exported hypothetical protein [Bartonella sp. AR 15-3] Length = 229 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 10/121 (8%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ--DPGKINAMASTKIE-FYS 317 ++ I + + Q PG N + + F + Sbjct: 110 KEGLAFTGVGIVQYKRRWPRWAPTKAMMEREPERYGHLGQGMPPGPENPLGARAFYLFKN 169 Query: 318 RNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +T +H + E R +SGC+R+ ++IIDL + + + E + Sbjct: 170 GKDTLFRIHGSHEAWSIG---RAISSGCIRLLNQDIIDLYNRVPDGSRVVVLQNSENTLN 226 Query: 374 T 374 Sbjct: 227 G 227 >gi|303239377|ref|ZP_07325905.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2] gi|302593163|gb|EFL62883.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2] Length = 235 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 4/81 (4%) Query: 88 ILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 I+ G + L G+ V ++++L G + ++ ++ A+ F Sbjct: 152 IIKNGSFGPFGTGFRELLPGDRGADVLAVQQKLKTLGYFHS--KETGIYEDDLKYALHKF 209 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q L+ + + AM Sbjct: 210 QKDKKLEVKNAITRADYHAMG 230 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 6/56 (10%) Query: 308 MASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + + +H T E + + GC+R+ N I +L + T Sbjct: 97 FGGRWLGLNVKWGRYGIHGTSEEYTIGS---AASHGCIRMFNKDIKELYNIVPLGT 149 >gi|240137872|ref|YP_002962344.1| hypothetical protein MexAM1_META1p1202 [Methylobacterium extorquens AM1] gi|240007841|gb|ACS39067.1| conserved hypothetical protein precursor, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 273 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 45/193 (23%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 V N+ ++ ++ ++V+ L V G +R V VG+ Sbjct: 44 FPVEAVDPRDLKARNVRQLVDFPSKEPPGT-LVVDPYKRFLYLVMEGGKAMRYVVGVGKA 102 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + + + R P W ++++D R Sbjct: 103 GFE-FTGEATVARKASWPRWTPTPDMLRRDPERNGR------------------------ 137 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETS 341 W + G N + + + ++ Y +H T EP +S Sbjct: 138 ---WAAG--------MPGGDRNPLGARALYLFKDGKDTLYRIHGTTEPWSIGE---AVSS 183 Query: 342 GCVRV--RNIIDL 352 GC+R+ +++IDL Sbjct: 184 GCIRMLNQDVIDL 196 >gi|126664955|ref|ZP_01735938.1| hypothetical protein MELB17_17844 [Marinobacter sp. ELB17] gi|126630325|gb|EBA00940.1| hypothetical protein MELB17_17844 [Marinobacter sp. ELB17] Length = 166 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 Y+H TP+ + GCVR+RN DL + P Sbjct: 123 IYIHGTPDTEPMGTP---LSHGCVRMRNA-DLVALFARLQPGMPV 163 >gi|319406824|emb|CBI80457.1| conserved exported hypothetical protein [Bartonella sp. 1-1C] Length = 229 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 10/121 (8%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ--DPGKINAMASTKIE-FYS 317 ++ I + + Q PG N + + F + Sbjct: 110 KEGLAFTGVGIIQYKRRWPSWAPTKAMMEREPERYGHLGQGMPPGPENPLGARAFYLFKN 169 Query: 318 RNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +T +H + E R +SGC+R+ ++IIDL + + E + Sbjct: 170 GKDTLFRIHGSHEAWSIG---RAISSGCIRLLNQDIIDLYNRVPDGSRVVVLQDRENTLN 226 Query: 374 T 374 Sbjct: 227 G 227 >gi|225166759|ref|YP_002650744.1| hypothetical protein pC2C203U28_p026 [Clostridium botulinum] gi|253771353|ref|YP_003034239.1| peptidoglycan-binding domain 1 protein [Clostridium botulinum D str. 1873] gi|225007423|dbj|BAH29519.1| conserved hypothetical protein [Clostridium botulinum] gi|253721330|gb|ACT33623.1| peptidoglycan-binding domain 1 protein [Clostridium botulinum D str. 1873] Length = 207 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + S+ ++ L I+ + F VK Q R GLD G+V T Sbjct: 3 LKKGMQNNSITYIQYGLRIT--CINPGNVDGIFGENTYIGVKKLQQRFGLDVDGIVGPGT 60 Query: 162 LEAMNVPVDL 171 E + + Sbjct: 61 WEKLKSQIKP 70 >gi|167464747|ref|ZP_02329836.1| Sporulation specific N-acetylmuramoyl-L-alanineamidase, spore cortex-lytic enzyme [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382328|ref|ZP_08056235.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153681|gb|EFX46056.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 266 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G V L+ R+ G + F +VK FQ GL G Sbjct: 32 TFSKNLVKYGTKGSDVYELQGRMKFLGFYK--GKVDGDFGYQTLQSVKCFQGEFGLQVDG 89 Query: 156 MVDSST 161 +V T Sbjct: 90 LVGPKT 95 >gi|163853780|ref|YP_001641823.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665385|gb|ABY32752.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] Length = 233 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 19/57 (33%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V ++ L+ G G +AV FQ GL G+ T A+ Sbjct: 4 VADIQRALLARGYDLGKAGADGDAGPRTIAAVTAFQRSAGLVADGIAGPKTQAALQK 60 >gi|260061978|ref|YP_003195058.1| hypothetical protein RB2501_10312 [Robiginitalea biformata HTCC2501] gi|88783540|gb|EAR14711.1| hypothetical protein RB2501_10312 [Robiginitalea biformata HTCC2501] Length = 175 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y+ + G + L G++ V RL++ L G F E +K Sbjct: 88 YRRLRILGPIG-FSRKTLKKGSTGQDVVRLQDALKQLGF--NCGTSDGIFGPKTEQCLKD 144 Query: 145 FQMRH-GLDPSGMVDSSTLEAMNVPVDLRIR 174 FQ + L +G D T + M + R+ Sbjct: 145 FQATNESLGITGQFDRKTRDYMVEILSARLN 175 >gi|254696980|ref|ZP_05158808.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254707720|ref|ZP_05169548.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] Length = 225 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 61 PAIPIQKMDTRYLRQVVPDPTGEMPGTIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 119 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 120 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 151 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 152 SAKNGGM-----APGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 203 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 204 FLNQDIIDLYDRVPAKTP 221 >gi|229056520|ref|ZP_04195927.1| hypothetical protein bcere0026_6430 [Bacillus cereus AH603] gi|228720733|gb|EEL72290.1| hypothetical protein bcere0026_6430 [Bacillus cereus AH603] Length = 253 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 289 NSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + ++ G N + + + + +H T + ++GC+R+ Sbjct: 67 TKYKNKEYHRKKIAGGAPNNPLGTRWLGLDKKE-YAIHGTNREGTIGSRE---SNGCIRM 122 Query: 347 RN 348 + Sbjct: 123 HD 124 >gi|188579403|ref|YP_001922848.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179342901|gb|ACB78313.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 282 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 44/184 (23%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 R L+ +R K ++V+ L V G +R V VG+ + + Sbjct: 61 RDLKARNVRQVVDYPTKEPPGTLVVDPYRRFLYLVMEGGKAMRYGVGVGKAGFE-FTGEA 119 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + R P W +I++D R Sbjct: 120 TVARKASWPRWTPTPDMIRRDPARNGRWAGG----------------------------- 150 Query: 294 PNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RN 348 G N + + + ++ Y +H T EP +SGC+R+ ++ Sbjct: 151 ------MPGGGRNPLGARALYLFKDGKDTLYRIHGTTEPWSIGE---AVSSGCIRMLNQD 201 Query: 349 IIDL 352 +IDL Sbjct: 202 VIDL 205 >gi|298241485|ref|ZP_06965292.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Ktedonobacter racemifer DSM 44963] gi|297554539|gb|EFH88403.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Ktedonobacter racemifer DSM 44963] Length = 381 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 15/101 (14%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S P + +E A+ + + W + L G +V+ L+ L G Sbjct: 222 SKFPQLRREVAAKLGQGMP-------ERTWVD-----LRWGVRGDTVRALQYVLRAQG-- 267 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S +D V FQ G+ P G + T EA+ Sbjct: 268 -SDIMISGTYDDPTYKLVTAFQSAKGIAPDGYTRNDTWEAL 307 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 11/104 (10%) Query: 76 AQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNSSVS--VQRLRERLIISGDLDPSK 128 + A + I G W L + L N S V ++ L +G Sbjct: 281 YKLVTAFQSAKGIAPDGYTRNDTWEALV-GAIRLDNQSQGDYVNAVQVILKRNGY---DV 336 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 ++ +D AVK Q H P+G VD + A+ V R Sbjct: 337 TVNGQYDHATMKAVKQVQSLHLFPPTGKVDLNAWCAIIGGVLSR 380 >gi|239832024|ref|ZP_04680353.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] gi|239824291|gb|EEQ95859.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] Length = 282 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 9/112 (8%) Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINA 307 S ++ +A+ +Q ++ I+ E + + E ++ + F D G N Sbjct: 163 STARRYGIAVGKQGLEFKGTGTINAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNP 222 Query: 308 MASTKIEF--YSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 + S + +++ +H T +P + ++GC R+ +++DL Sbjct: 223 LGSRALYLFQGNKDTYIRIHGTVQPWTIGSS---ASNGCFRMINEDVMDLYE 271 >gi|189220475|ref|YP_001941115.1| erfK/srfK family protein [Methylacidiphilum infernorum V4] gi|189187333|gb|ACD84518.1| Uncharacterized erfK/srfK family protein [Methylacidiphilum infernorum V4] Length = 303 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 18/72 (25%) Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIEEVVKTR 375 ++H T + L + GC+R++N +++L + + TP + + Sbjct: 102 NRGIFIHGTNQEGLVGQP---VSYGCIRMKNRDVLELYDLVSEYTPVYIQKE-------- 150 Query: 376 KTTPVKLATEVP 387 L +P Sbjct: 151 -----PLKKPIP 157 >gi|148257802|ref|YP_001242387.1| hypothetical protein BBta_6577 [Bradyrhizobium sp. BTAi1] gi|146409975|gb|ABQ38481.1| hypothetical protein BBta_6577 [Bradyrhizobium sp. BTAi1] Length = 404 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S+ + L+ +L G F A+ FQ GL SG +D++T EA+ Sbjct: 213 SADEITDLQRKLRRLGYASVGNP-DGKFGTKTVGALAQFQAHEGLPVSGRLDAATREALK 271 Query: 167 V 167 Sbjct: 272 T 272 >gi|126664625|ref|ZP_01735609.1| Membrane-bound lytic murein transglycosylase B [Marinobacter sp. ELB17] gi|126630951|gb|EBA01565.1| Membrane-bound lytic murein transglycosylase B [Marinobacter sp. ELB17] Length = 418 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%) Query: 87 DILSRGG---WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 I GG P + L S ++ +L+++L G + +A++ Sbjct: 337 RIAGAGGLQNPPPVDAPAL----SRDNIMQLQQQLEQRGY--SAGSPDGIMGPATRAAIR 390 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVD 170 +Q+ +GL G L + V Sbjct: 391 QYQIANGLVADGYPGPQVLHVLQVTPA 417 >gi|159046036|ref|YP_001534830.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|157913796|gb|ABV95229.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] Length = 200 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 48/195 (24%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR-YVLVNIPAASLEAV-ENGKVGLRSTVIV 221 + V +R+ + + VLV+I + +L E+ V Sbjct: 38 ELEQDVTQTVRRNVSSFRALDWRPYFSNTRNGAVLVDISSRALHFWSEDQTEYKLYPTSV 97 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 + T + I + + P W ++ +++P++ Sbjct: 98 PLTEDLTRTGRTSITKKVEGPSWRPTPAMR--------QRNPEW---------------- 133 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFET 340 PG N M + + Y +H T + R + Sbjct: 134 ---------------PEFIPPGPDNPMGTHAMHLT--WTYYRIHGTHDTRKIG---RRSS 173 Query: 341 SGCVRVRNIIDLDVW 355 +GC+ + N D+ Sbjct: 174 NGCIGLFN-EDIAEL 187 >gi|148655791|ref|YP_001275996.1| peptidoglycan binding domain-containing protein [Roseiflexus sp. RS-1] gi|148567901|gb|ABQ90046.1| Peptidoglycan-binding domain 1 protein [Roseiflexus sp. RS-1] Length = 974 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V ++ L G P + F A FQ GL P G++ T A Sbjct: 574 GSQGQDVADAQQLLNQHG-AAPPLVVDGIFGPKTRQATIEFQKSRGLAPDGIIGPLTWGA 632 Query: 165 MNVPV 169 + Sbjct: 633 LESGA 637 >gi|314933610|ref|ZP_07840975.1| carboxyl- protease [Staphylococcus caprae C87] gi|313653760|gb|EFS17517.1| carboxyl- protease [Staphylococcus caprae C87] Length = 492 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + HLG+ + +V+ ++ L G S FD+ +ES +K FQ + L+ +G D Sbjct: 406 KTYHLGDENKNVKTMKIGLTALGY--KVNNESNQFDSELESTIKSFQKDNHLEVTGKFDK 463 Query: 160 ST 161 T Sbjct: 464 KT 465 >gi|260427569|ref|ZP_05781548.1| ErfK/YbiS/YcfS/YnhG family protein [Citreicella sp. SE45] gi|260422061|gb|EEX15312.1| ErfK/YbiS/YcfS/YnhG family protein [Citreicella sp. SE45] Length = 244 Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 20/114 (17%) Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP------------GKINAMASTK 312 YL G+ + DW P + ++DP G N + + Sbjct: 103 YLIAVGAQGYGFAGEATIPFQRDWPYWTPTANMIKRDPETYGPVRNGLPGGLENPLGARA 162 Query: 313 IEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + R+ Y +H TP P + +SGC+R+ ++ I L + T Sbjct: 163 LYLYKNGRDTLYRIHGTPSPWTVGH---ATSSGCIRMFNQDSIHLAAEVPNGTK 213 >gi|254462358|ref|ZP_05075774.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacterales bacterium HTCC2083] gi|206678947|gb|EDZ43434.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 148 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 302 PGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + F + +TY +H T +P ++GC+R+ N Sbjct: 83 GGPRNPLGARALYLFQNGRDTYFRIHGTTQPSSIGQS---VSNGCIRMIN 129 >gi|240142794|ref|YP_002967307.1| hypothetical protein MexAM1_META2p1214 [Methylobacterium extorquens AM1] gi|240012741|gb|ACS43966.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 248 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%) Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFE 339 + + + + G N + + R+ Y +H T EP Sbjct: 141 PDMIARDPERNGPWRNGMAGGPGNPLGPRALYLFDGGRDTLYRIHGTTEPGTIGTN---V 197 Query: 340 TSGCVRV--RNIIDLDVWLLKDT 360 +SGC+R+ ++IIDL + DT Sbjct: 198 SSGCIRMFNQDIIDLYGRVPADT 220 >gi|254460802|ref|ZP_05074218.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacterales bacterium HTCC2083] gi|206677391|gb|EDZ41878.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacteraceae bacterium HTCC2083] Length = 195 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 47/188 (25%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIV 221 + + +R+ + + + VLV+I + +L E+G V Sbjct: 33 ELEKDISQAVRRNISSFRTLDWRPYFSNLNNGAVLVDISSRALHFWSEDGNTYKLYPSSV 92 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 T +++ R + P W S+ +++P++ Sbjct: 93 PLTPDLTKKGRTKVVRKVEGPTWRPTPSMK--------KRNPEW---------------- 128 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFET 340 +PG N + + + Y +H T + R + Sbjct: 129 ---------------PDVVEPGPDNPLGTHALYLS--WTYYRIHGTHDTRKIG---RRSS 168 Query: 341 SGCVRVRN 348 +GC+ + N Sbjct: 169 NGCIGLYN 176 >gi|108759124|ref|YP_629455.1| hypothetical protein MXAN_1196 [Myxococcus xanthus DK 1622] gi|108463004|gb|ABF88189.1| hypothetical protein MXAN_1196 [Myxococcus xanthus DK 1622] Length = 205 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L ++ LR RL+ G L + AV FQ +GL P+G Sbjct: 137 TLSLGTLQPVSTEEG---LRARLVNLGFLADEASEED----ALSEAVARFQAEYGLMPNG 189 Query: 156 MVDSSTLEAMN 166 VD T + Sbjct: 190 TVDERTRHKLR 200 >gi|209546477|ref|YP_002278395.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537721|gb|ACI57655.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 190 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 6/66 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 G +N + + I Y +H T E F +SGC R+ Sbjct: 113 KARAAGLPDLVPAGPLNPLGARGIYLYKGGADTLYRIHGTNEQSTVG---GFASSGCFRM 169 Query: 347 RNIIDL 352 N + Sbjct: 170 SNADVI 175 >gi|114775654|ref|ZP_01451222.1| hypothetical protein SPV1_04978 [Mariprofundus ferrooxydans PV-1] gi|114553765|gb|EAU56146.1| hypothetical protein SPV1_04978 [Mariprofundus ferrooxydans PV-1] Length = 533 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 15/121 (12%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-----PSGMVDSSTLE 163 ++ +R RL + G L+ G + + SA+ FQ L G V T Sbjct: 70 SRLRTIRNRLFLLGYLERDSGRAAL-GPQLMSAITAFQQDARLSVASFVVDGWVGEQTWA 128 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A+ + + L + G + A L G +VI R Sbjct: 129 ALQE-----LVSFEQPLDMERWFA----GDVACPALVRAVGLRLFALGLARDHLSVISER 179 Query: 224 V 224 Sbjct: 180 A 180 >gi|302532771|ref|ZP_07285113.1| predicted protein [Streptomyces sp. C] gi|302441666|gb|EFL13482.1| predicted protein [Streptomyces sp. C] Length = 231 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V L+ L + LD + + + A E+AV+ Q +GL+ G+ +T Sbjct: 155 GSSGEHVSELQRALAVCHGLD-TGTIDGVYGAKTEAAVRTLQSWNGLNADGIYGPNTRNV 213 Query: 165 MN 166 ++ Sbjct: 214 VS 215 >gi|302532773|ref|ZP_07285115.1| predicted protein [Streptomyces sp. C] gi|302441668|gb|EFL13484.1| predicted protein [Streptomyces sp. C] Length = 141 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%) Query: 89 LSRGG-WPELPIRP-------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 +SRGG W +P + G+S +V L+ L I + G + A E+ Sbjct: 43 VSRGGYWTAVPATSGGSTSCVMGRGSSGPAVGELQLALAIC-YGMDTGGSDSIYGAKTEA 101 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMN 166 AV+ Q G G+ +T + Sbjct: 102 AVRSLQSATGQTADGIYGPNTRNVVE 127 >gi|297804516|ref|XP_002870142.1| hypothetical protein ARALYDRAFT_493212 [Arabidopsis lyrata subsp. lyrata] gi|297315978|gb|EFH46401.1| hypothetical protein ARALYDRAFT_493212 [Arabidopsis lyrata subsp. lyrata] Length = 362 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V L+ L G + D S+ S FD +ESA+ L+Q GL +G +D+ST Sbjct: 61 QIGSHVNGVSELKRYLHRFGYVNDGSESFSDVFDGPLESAISLYQENLGLPITGRLDTST 120 Query: 162 LEAMNVP 168 + M++P Sbjct: 121 VSLMSLP 127 >gi|306845179|ref|ZP_07477755.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO1] gi|306274338|gb|EFM56145.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. BO1] Length = 238 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 74 PAIPIQKMDTRYLRQVVPDPTGEMPGTIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 133 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 164 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 165 SAKNGGM-----APGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 216 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 217 FLNQDIIDLYDRVPAKTP 234 >gi|307329028|ref|ZP_07608196.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306885390|gb|EFN16408.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 387 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 9/146 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + V L+ L +G + AF + V +FQ+R GL +G VD T A Sbjct: 211 GQADACVHELQSLLARAG---GELDIDGAFGPATQMRVVVFQLRSGLTANGSVDERTKRA 267 Query: 165 MNVPVDLRIR--QLQVNLMRIKKLLEQKMGLRYVLVNIPAAS--LEAVENGKVGLRSTVI 220 + + + RI+++ + + + + L + N V Sbjct: 268 LYENEGKPLDTWTPERVTRRIREVFTEDPERAVGIADCASYLDPLYTLPNSNATRNWGVF 327 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVI 246 + +R + +P W I Sbjct: 328 QLYDGTLRKLGGTREQAL--DPDWNI 351 >gi|256159287|ref|ZP_05457082.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|256254597|ref|ZP_05460133.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|261221771|ref|ZP_05936052.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|265997735|ref|ZP_06110292.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] gi|260920355|gb|EEX87008.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti B1/94] gi|262552203|gb|EEZ08193.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M490/95/1] Length = 238 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 74 PAIPIQKMDTRYLRQVVPDPTGEMPGTIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 133 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 164 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 165 SAKNGGM-----APGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 216 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 217 FLNQDIIDLYDRVPAKTP 234 >gi|242088519|ref|XP_002440092.1| hypothetical protein SORBIDRAFT_09g025870 [Sorghum bicolor] gi|241945377|gb|EES18522.1| hypothetical protein SORBIDRAFT_09g025870 [Sorghum bicolor] Length = 380 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ + L+ L G + + FD ++E+AV+ +Q L +G +DS Sbjct: 57 RRGSRVAGLADLKRYLARFGYMQAPRPAHEHDDVFDDHMEAAVRRYQSSLSLPVTGRLDS 116 Query: 160 STL 162 STL Sbjct: 117 STL 119 >gi|254476390|ref|ZP_05089776.1| ErfK/YbiS/YcfS/YnhG [Ruegeria sp. R11] gi|214030633|gb|EEB71468.1| ErfK/YbiS/YcfS/YnhG [Ruegeria sp. R11] Length = 195 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 48/183 (26%) Query: 179 NLMRIKKLLEQK-MGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRIN 236 + + +G+ +L +I + +L +G+ V + T +S I Sbjct: 47 SFQQQDWRDHFDELGVGCILADISSRALHYWGGDGETYRLFPSSVPMSEELTRRGYSEIV 106 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 R NP W S+ ++D P+ Sbjct: 107 RKRENPSWTPTASMRERD---------------------------------------PSL 127 Query: 297 IFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLD 353 R + G N + + + +H T + R +SGC+ + N + +L Sbjct: 128 PTRIEGGVPGNPLGTRAMYLTWP-AYLVHGTHDTRKIG---RQSSSGCIGLYNEHVEELY 183 Query: 354 VWL 356 + Sbjct: 184 DLV 186 >gi|23501453|ref|NP_697580.1| hypothetical protein BR0564 [Brucella suis 1330] gi|62289532|ref|YP_221325.1| hypothetical protein BruAb1_0586 [Brucella abortus bv. 1 str. 9-941] gi|82699461|ref|YP_414035.1| hypothetical protein BAB1_0589 [Brucella melitensis biovar Abortus 2308] gi|161618538|ref|YP_001592425.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|163842841|ref|YP_001627245.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis ATCC 23445] gi|189023789|ref|YP_001934557.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus S19] gi|225852094|ref|YP_002732327.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] gi|254688850|ref|ZP_05152104.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|254693332|ref|ZP_05155160.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|254701360|ref|ZP_05163188.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|254703905|ref|ZP_05165733.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|254709699|ref|ZP_05171510.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|254718716|ref|ZP_05180527.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|254729882|ref|ZP_05188460.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|256031190|ref|ZP_05444804.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|256044274|ref|ZP_05447178.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060697|ref|ZP_05450861.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|256113107|ref|ZP_05453984.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|256257098|ref|ZP_05462634.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|256264396|ref|ZP_05466928.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 2 str. 63/9] gi|256369005|ref|YP_003106511.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|260168325|ref|ZP_05755136.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. F5/99] gi|260545712|ref|ZP_05821453.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260563627|ref|ZP_05834113.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|260566847|ref|ZP_05837317.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|260754333|ref|ZP_05866681.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260757552|ref|ZP_05869900.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260761377|ref|ZP_05873720.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883358|ref|ZP_05894972.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|261213579|ref|ZP_05927860.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|261315214|ref|ZP_05954411.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261317229|ref|ZP_05956426.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261324687|ref|ZP_05963884.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261751897|ref|ZP_05995606.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|261754555|ref|ZP_05998264.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|261757785|ref|ZP_06001494.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. F5/99] gi|265983691|ref|ZP_06096426.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|265988268|ref|ZP_06100825.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|265990684|ref|ZP_06103241.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994516|ref|ZP_06107073.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|297247945|ref|ZP_06931663.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 5 str. B3196] gi|306838693|ref|ZP_07471528.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NF 2653] gi|23347356|gb|AAN29495.1| conserved hypothetical protein [Brucella suis 1330] gi|62195664|gb|AAX73964.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82615562|emb|CAJ10545.1| ErfK/YbiS/YcfS/YnhG:Twin-arginine translocation pathway signal [Brucella melitensis biovar Abortus 2308] gi|161335349|gb|ABX61654.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|163673564|gb|ABY37675.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis ATCC 23445] gi|189019361|gb|ACD72083.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus S19] gi|225640459|gb|ACO00373.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] gi|255999163|gb|ACU47562.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella microti CCM 4915] gi|260097119|gb|EEW80994.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus NCTC 8038] gi|260153643|gb|EEW88735.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. 16M] gi|260156365|gb|EEW91445.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 4 str. 40] gi|260667870|gb|EEX54810.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260671809|gb|EEX58630.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674441|gb|EEX61262.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 6 str. 870] gi|260872886|gb|EEX79955.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 9 str. C68] gi|260915186|gb|EEX82047.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 3 str. Tulya] gi|261296452|gb|EEX99948.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis B2/94] gi|261300667|gb|EEY04164.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella neotomae 5K33] gi|261304240|gb|EEY07737.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M163/99/10] gi|261737769|gb|EEY25765.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. F5/99] gi|261741650|gb|EEY29576.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 5 str. 513] gi|261744308|gb|EEY32234.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella suis bv. 3 str. 686] gi|262765629|gb|EEZ11418.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 3 str. Ether] gi|263001468|gb|EEZ14043.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 1 str. Rev.1] gi|263094691|gb|EEZ18470.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis bv. 2 str. 63/9] gi|264660465|gb|EEZ30726.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella pinnipedialis M292/94/1] gi|264662283|gb|EEZ32544.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|297175114|gb|EFH34461.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 5 str. B3196] gi|306406180|gb|EFM62424.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NF 2653] gi|326408588|gb|ADZ65653.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M28] gi|326538308|gb|ADZ86523.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis M5-90] Length = 238 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 74 PAIPIQKMDTRYLRQVVPDPTGEMPGTIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 133 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 164 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 165 SAKNGGM-----APGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 216 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 217 FLNQDIIDLYDRVPAKTP 234 >gi|154247143|ref|YP_001418101.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] gi|154161228|gb|ABS68444.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] Length = 197 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 14/153 (9%) Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI--PRSIIQKDMMALLRQDP 263 + K+ + V G V +PI ++ I S + + + Sbjct: 29 DIFNFNKLFSGANVNDGYVGTSSPIGRQMVSIDPKYAPGTIVIRTSERRLYYVTSRGEAL 88 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP--------GKINAMASTKIEF 315 +Y G + + +W PP + R+ P G N + + + Sbjct: 89 RYGVGVGREGFQWSGVKTVSAKKEWPGWTPPAQMLRRRPDLPRYMPGGIENPLGARAMYL 148 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 S +H + EP +SGC R+ N Sbjct: 149 GSS-LYRIHGSNEPETIGQ---AVSSGCFRMTN 177 >gi|330721409|gb|EGG99471.1| Conserved domain protein [gamma proteobacterium IMCC2047] Length = 168 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 8/54 (14%) Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 N + R Y+H TP+ L ++ GC+R+RN +L + Sbjct: 111 KNRLGDVD---SMRRFIYIHGTPDTELMGI---AKSHGCIRMRNAELVELFDHV 158 >gi|312871420|ref|ZP_07731515.1| peptidase, S41 family [Lactobacillus iners LEAF 3008A-a] gi|312872352|ref|ZP_07732422.1| peptidase, S41 family [Lactobacillus iners LEAF 2062A-h1] gi|311092175|gb|EFQ50549.1| peptidase, S41 family [Lactobacillus iners LEAF 2062A-h1] gi|311093073|gb|EFQ51422.1| peptidase, S41 family [Lactobacillus iners LEAF 3008A-a] Length = 460 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L + +D ++VK+F+ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYLSNNLT--GVYDNATLNSVKMFEKDNNLKVTGIVNKDI 433 Query: 162 LEAMNVPV 169 A+ V Sbjct: 434 RYALYVAA 441 >gi|225452582|ref|XP_002275556.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 315 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKG------LSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+ + +L++ L G L S FD VESA+K +Q + L+ +G +D Sbjct: 52 GDKVEGIHKLKKYLGQFGYLSYSHSKYHTHANDDDFDDLVESAIKTYQTNYHLNATGSLD 111 Query: 159 SSTLEAMNVP 168 S T+ M P Sbjct: 112 SETVSQMVKP 121 >gi|23502014|ref|NP_698141.1| hypothetical protein BR1136 [Brucella suis 1330] gi|82699976|ref|YP_414550.1| hypothetical protein BAB1_1159 [Brucella melitensis biovar Abortus 2308] gi|256369562|ref|YP_003107072.1| hypothetical protein BMI_I1148 [Brucella microti CCM 4915] gi|297248449|ref|ZP_06932167.1| carnitine operon oxidoreductase CaiA [Brucella abortus bv. 5 str. B3196] gi|23347966|gb|AAN30056.1| conserved hypothetical protein [Brucella suis 1330] gi|82616077|emb|CAJ11115.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis biovar Abortus 2308] gi|255999724|gb|ACU48123.1| hypothetical protein BMI_I1148 [Brucella microti CCM 4915] gi|297175618|gb|EFH34965.1| carnitine operon oxidoreductase CaiA [Brucella abortus bv. 5 str. B3196] Length = 237 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINA 307 + ++ +A+ +Q ++ I E + + E ++ + F D G N Sbjct: 118 TTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNP 177 Query: 308 MASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + S + + N +H T +P + ++GC R+ +++DL + T Sbjct: 178 LGSRAMYLFQGNKDTYIRIHGTVQPWTIGSS---ASNGCFRMINEDVMDLYDRVTLGTE 233 >gi|47564866|ref|ZP_00235910.1| putative peptidoglycan binding domain protein [Bacillus cereus G9241] gi|47558239|gb|EAL16563.1| putative peptidoglycan binding domain protein [Bacillus cereus G9241] Length = 592 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 16/141 (11%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPI---ISKETIAQTEKAIAFYQDIL---SRGGWPELPI 99 + +N S +P S+ AI + Q + + G + Sbjct: 151 RSIQQWLNNKYINRADF--SYMPCDGHYSRSVQEALMFAIQYEQGLQDGTANGIFGPTTQ 208 Query: 100 RP-----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L G++ V + LI +G + A V + +K FQ L + Sbjct: 209 EKIKSIILKEGSTGPFVYLFQAALIFNGY---DVPFDGKYSAAVTTQLKQFQNFSLLKAT 265 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G+ D T ++ V RQ Sbjct: 266 GISDFQTWASLLVSTGDTERQ 286 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 43/153 (28%), Gaps = 26/153 (16%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSSTLEAMNV-- 167 V+ ++ L G G++ + ++A+ Q G G+V +A+ Sbjct: 81 VKIIQAALYCKGY--GPGGITGTYGPGTQAAITSMQKNLGSTSADGVVTPKLFKALLTMD 138 Query: 168 ------PVDLRIRQLQ-------VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 +IR +Q +N + G V E G Sbjct: 139 AYVLVNNGSEKIRSIQQWLNNKYINRADFSYMPCD--GHYSRSVQEALMFAIQYEQGLQD 196 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + I G P +I I+ P Sbjct: 197 GTANGIFG------PTTQEKIKSIILKEGSTGP 223 >gi|328954812|ref|YP_004372145.1| Peptidoglycan-binding domain 1 protein [Coriobacterium glomerans PW2] gi|328455136|gb|AEB06330.1| Peptidoglycan-binding domain 1 protein [Coriobacterium glomerans PW2] Length = 301 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 12/84 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W +L LG+ V+ L+ L G F + E+A++ Sbjct: 65 WSKLVDASYRLGDRTLYLRLPNFHGADVRELQTALNTLGF--SCGSADSHFGPHTEAALQ 122 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ GL GM T ++ Sbjct: 123 QFQENVGLFADGMAFQDTFSYIDR 146 Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 P+ G +V+ ++ RL++ G +D ++ F + AV+ F+ L VD Sbjct: 2 EPITAGMQGPAVEDVQTRLVLLGHAIDATELDDQRFGSSTARAVRSFRQSKALPDGEQVD 61 Query: 159 SSTLEAM 165 + + Sbjct: 62 MACWSKL 68 >gi|218678250|ref|ZP_03526147.1| hypothetical protein RetlC8_04992 [Rhizobium etli CIAT 894] Length = 205 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 64/198 (32%), Gaps = 45/198 (22%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T +A + I +++ R + ++VN L + +R + Sbjct: 30 TKDAGYSLPAIPIDRVKPQFRRQVVSYQTTERPGTIIVNTRERFLYYILANGKAMRYGIG 89 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ + + P W P+ + ++ + + ++ D G Sbjct: 90 VGKQGFA-WAGTAYVAWKQEWPTWHPPKEMAERR--PDVAK----------YVEDGMG-- 134 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFNNVV 336 PG N + + + ++ + +H TPE Sbjct: 135 ---------------------PGLTNPLGARAMYLFNEDGKDTLFRLHGTPEWASIGT-- 171 Query: 337 RFETSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 172 -AASSGCIRLMNQDVIDL 188 >gi|62290049|ref|YP_221842.1| hypothetical protein BruAb1_1142 [Brucella abortus bv. 1 str. 9-941] gi|161619088|ref|YP_001592975.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|189024289|ref|YP_001935057.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus S19] gi|225852635|ref|YP_002732868.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] gi|254693845|ref|ZP_05155673.1| hypothetical protein Babob3T_04142 [Brucella abortus bv. 3 str. Tulya] gi|254697494|ref|ZP_05159322.1| hypothetical protein Babob28_07261 [Brucella abortus bv. 2 str. 86/8/59] gi|254719198|ref|ZP_05181009.1| hypothetical protein Bru83_06595 [Brucella sp. 83/13] gi|254730391|ref|ZP_05188969.1| hypothetical protein Babob42_04167 [Brucella abortus bv. 4 str. 292] gi|256113698|ref|ZP_05454502.1| hypothetical protein Bmelb3E_13053 [Brucella melitensis bv. 3 str. Ether] gi|256159865|ref|ZP_05457594.1| hypothetical protein BcetM4_12819 [Brucella ceti M490/95/1] gi|256257607|ref|ZP_05463143.1| hypothetical protein Babob9C_09724 [Brucella abortus bv. 9 str. C68] gi|306838191|ref|ZP_07471047.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NF 2653] gi|62196181|gb|AAX74481.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|161335899|gb|ABX62204.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella canis ATCC 23365] gi|189019861|gb|ACD72583.1| ErfK/YbiS/YcfS/YnhG [Brucella abortus S19] gi|225641000|gb|ACO00914.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella melitensis ATCC 23457] gi|306406781|gb|EFM63004.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. NF 2653] gi|326409154|gb|ADZ66219.1| ErfK/YbiS/YcfS/YnhG [Brucella melitensis M28] Length = 230 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINA 307 + ++ +A+ +Q ++ I E + + E ++ + F D G N Sbjct: 111 TTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNP 170 Query: 308 MASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + S + + N +H T +P + ++GC R+ +++DL + T Sbjct: 171 LGSRAMYLFQGNKDTYIRIHGTVQPWTIGSS---ASNGCFRMINEDVMDLYDRVTLGTE 226 >gi|172057401|ref|YP_001813861.1| peptidoglycan binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171989922|gb|ACB60844.1| Peptidoglycan-binding domain 1 protein [Exiguobacterium sibiricum 255-15] Length = 220 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 38/128 (29%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP--------------IRPLHLGNSSV 109 ++ P + + A+ YQ + G W P +PL LG Sbjct: 96 RAEFPAPPDPRLKRIVAAMKRYQ-MQWGGDWGSFPDYPHFQLYDAVNGQTKPL-LGPRYP 153 Query: 110 S--------------VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ +++RL + L+ FD + +K FQ +H L G Sbjct: 154 GQPLYAGAERMDRTLIRLIQKRLRL--------PLTGRFDQKLTQRIKQFQRQHRLAVDG 205 Query: 156 MVDSSTLE 163 ++ T Sbjct: 206 IIGPVTWR 213 >gi|238926502|ref|ZP_04658262.1| 3D domain protein [Selenomonas flueggei ATCC 43531] gi|238885696|gb|EEQ49334.1| 3D domain protein [Selenomonas flueggei ATCC 43531] Length = 269 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 4/104 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +V+ ++E LI SG L + A++ Q H L G+ +T Sbjct: 92 KEGMRGGAVRHVQELLIQSGYLAGAA--DGIAGPLTREAIERCQADHQLVVDGICGEATY 149 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 ++ D + ++ + + G R V V+ A S Sbjct: 150 HVLSGGAD--YDPAALGIVDERAPQVSRGGGRSVYVSATAYSAY 191 >gi|291523484|emb|CBK81777.1| Putative peptidoglycan binding domain [Coprococcus catus GD/7] Length = 422 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD-LDPSKGL--SVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S VQ+++E+L D + + AV+ FQ L + Sbjct: 338 PGYDLTIGSSGQKVQQMQEQLNRISDNYPAIPKIAADGIYGNQTAEAVRTFQKIFNLPQT 397 Query: 155 GMVDSSTLEAMNV 167 G+ D +T ++ Sbjct: 398 GVTDYATWYKISQ 410 >gi|307153693|ref|YP_003889077.1| peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7822] gi|306983921|gb|ADN15802.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7822] Length = 479 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP-----SKGLSVAFDAYVESAVKLFQMRHGLDP-SG 155 L G++ +V+++++ LI P + + A VK FQ L G Sbjct: 109 LRNGSTGEAVKKIQQALIDLKYPMPISTQKTGEPDGIYGAETSKTVKQFQTDQALKDKDG 168 Query: 156 MVDSSTLEAMNV 167 +V T+E ++ Sbjct: 169 IVGKDTIEKLDQ 180 >gi|227819315|ref|YP_002823286.1| hypothetical protein NGR_b10800 [Sinorhizobium fredii NGR234] gi|227338314|gb|ACP22533.1| hypothetical protein NGR_b10800 [Sinorhizobium fredii NGR234] Length = 203 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 6/66 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 P G N M + I Y + +H T E F +SGC R+ Sbjct: 126 KTRVPGLPELVPAGPFNPMGARGIYLYRGSADTLYRIHGTNEQSTVGE---FASSGCFRM 182 Query: 347 RNIIDL 352 N + Sbjct: 183 SNADVI 188 >gi|254712879|ref|ZP_05174690.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|254716767|ref|ZP_05178578.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261218563|ref|ZP_05932844.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261320588|ref|ZP_05959785.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] gi|260923652|gb|EEX90220.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M13/05/1] gi|261293278|gb|EEX96774.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella ceti M644/93/1] Length = 238 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 74 PAIPIQKMDTRYLRQVVPDPTGEMPGTIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 133 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 164 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 165 SAKNGG-----IAPGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 216 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 217 FLNQDIIDLYDRVPAKTP 234 >gi|240142632|ref|YP_002967145.1| hypothetical protein MexAM1_META2p1012 [Methylobacterium extorquens AM1] gi|240012579|gb|ACS43804.1| Conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 283 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 45/193 (23%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 V N+ ++ ++ ++V+ L V G +R V VG+ Sbjct: 54 FPVEAVDPRDLKARNVRQLVDYPSKEPPGT-LVVDPYKRFLYLVMEGGKAMRYAVGVGKA 112 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + + + R P W ++++D R Sbjct: 113 GFE-FTGKATVARKASWPRWTPTPDMLRRDPERNGRWAGG-------------------- 151 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETS 341 G+ N + + + ++ Y +H T EP +S Sbjct: 152 ---------------MPGGERNPLGARALYLFKDGKDTLYRIHGTTEPWSIGE---AVSS 193 Query: 342 GCVRV--RNIIDL 352 GC+R+ +++IDL Sbjct: 194 GCIRMLNQDVIDL 206 >gi|254476208|ref|ZP_05089594.1| twin-arginine translocation pathway signal [Ruegeria sp. R11] gi|214030451|gb|EEB71286.1| twin-arginine translocation pathway signal [Ruegeria sp. R11] Length = 209 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 46/182 (25%) Query: 183 IKKLLEQK-MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 K + +LV+I + +L E+G V D T ++I R + Sbjct: 66 KKWQPYFDNLRKGAILVDIDSRALHYWSEDGNDYRLFPSSVPLSDDLTRRGRTQIIRKVD 125 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W ++ L+++P++ Sbjct: 126 GPGWAPTPNM--------LKRNPEW-------------------------------PAYI 146 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N + + + + +H T + R ++GC+ + N + Sbjct: 147 PPGPDNPLGTHALYLSWKY-YRIHGTHDTRKIG---RKSSNGCIGLYN-EHIAELFALTK 201 Query: 361 PT 362 Sbjct: 202 VG 203 >gi|226499088|ref|NP_001151749.1| metalloendoproteinase 1 [Zea mays] gi|195649493|gb|ACG44214.1| metalloendoproteinase 1 precursor [Zea mays] Length = 365 Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + L++ L G L P S AFD +E+A+ +Q GL+ +G +D ST Sbjct: 52 GEERQGLAGLKDYLSHFGYLPPPPPSSPFSDAFDQNLEAAIATYQRNFGLNATGALDPST 111 Query: 162 LEAMNVP 168 + M P Sbjct: 112 VSQMVAP 118 >gi|311067778|ref|YP_003972701.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus atrophaeus 1942] gi|310868295|gb|ADP31770.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus atrophaeus 1942] Length = 297 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 7/79 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 LP L S V +++ L + G+ + +AV FQ Sbjct: 216 PLPDGILQLTTPYTSGEKVYQVQNALAALYFYPDKGAVNNGIDGIYGPKTANAVSRFQSV 275 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +GL G+ +T + Sbjct: 276 NGLTVDGIYGPATKAKIAA 294 >gi|147807819|emb|CAN73128.1| hypothetical protein VITISV_030256 [Vitis vinifera] Length = 305 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKG------LSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+ + +L++ L G L S FD VESA+K +Q + L+ +G +D Sbjct: 52 GDKVEGIHKLKKYLGQFGYLSYSHSKYHTHANDDDFDDLVESAIKTYQTNYHLNATGSLD 111 Query: 159 SSTLEAMNVP 168 S T+ M P Sbjct: 112 SETVSQMVKP 121 >gi|86361200|ref|YP_473087.1| hypothetical protein RHE_PF00470 [Rhizobium etli CFN 42] gi|86285302|gb|ABC94360.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 224 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 40/153 (26%), Gaps = 47/153 (30%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L + K +R V VGR + + I+ P W P + ++ Sbjct: 81 LYLIMENKTAIRYGVGVGREGFK-WFGRATIDAKSLWPRWTPPPEMRKRH---------- 129 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NT 321 P F N + + + Sbjct: 130 ----------------------------PELPEFVSGGSPKNPLGPRAMYLHRDGVDTGY 161 Query: 322 YMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 H T EP +SGC+R+ + IDL Sbjct: 162 RFHGTLEPWSIGKD---ASSGCIRMFNEDAIDL 191 >gi|171915584|ref|ZP_02931054.1| hypothetical protein VspiD_30475 [Verrucomicrobium spinosum DSM 4136] Length = 129 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 Y+H T + L + GCVR+RN +++L + TP + Sbjct: 85 VYIHGTNQEELIGQRG---SHGCVRMRNLDVVELYDLVEPGTPVY 126 >gi|115524111|ref|YP_781022.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris BisA53] gi|115518058|gb|ABJ06042.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris BisA53] Length = 294 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P + + LG+ +V L+ L G S ++A V FQ Sbjct: 195 GHWVPAAPIVRGDVMKLGSDGDAVLALQRALAEYGY---GLTPSGHYNAATAEVVTAFQR 251 Query: 148 RHG-LDPSGMVDSSTLE 163 G+ D+STL Sbjct: 252 HFRPQKVDGIADTSTLA 268 >gi|319403817|emb|CBI77401.1| conserved exported hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 229 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 10/107 (9%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ--DPGKINAMASTKIE-FYS 317 ++ I + + Q PG N + + F + Sbjct: 110 KEGLAFTGVGIVQYKRRWPRWAPTKAMMEREPERYGHLGQGMPPGPENPLGARAFYLFKN 169 Query: 318 RNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +T +H + E R +SGC+R+ ++IIDL + + Sbjct: 170 GKDTLFRIHGSHEAWSIG---RAISSGCIRLLNQDIIDLYNRVPDGS 213 >gi|170738497|ref|YP_001767152.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168192771|gb|ACA14718.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 295 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 8/75 (10%) Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFE 339 + + + + G+ N + + + ++ Y +H T EP Sbjct: 135 PDMIRRDPTRNGRWAGGMPGGERNPLGARALYLFKDGKDTLYRIHGTTEPWSIGE---AV 191 Query: 340 TSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 192 SSGCIRMLNQDVIDL 206 >gi|218130611|ref|ZP_03459415.1| hypothetical protein BACEGG_02200 [Bacteroides eggerthii DSM 20697] gi|217986955|gb|EEC53286.1| hypothetical protein BACEGG_02200 [Bacteroides eggerthii DSM 20697] Length = 298 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS----VAFDAYVESAVKLFQMRHGL 151 + R L G V L L + ++ S +DA + SAVK FQ GL Sbjct: 130 SIGDRTLKTGIHGSDVTSLTGYLATALYINRSWIKEKEGYSLYDATIASAVKHFQKDAGL 189 Query: 152 DPSGMVDSSTLEAMN 166 +G+ D +T+ + Sbjct: 190 PQTGIADQTTINKLK 204 Score = 45.0 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 106 NSSVSVQRLRERLIISGDLDPS------KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + V L L +G F + +AV+ FQ + L +G D Sbjct: 228 DKGTDVTELVNLLTKAGFAPDPKKIVMTNDGRTEFTKDIATAVRFFQAYNNLSVTGRADE 287 Query: 160 STLEAMNVPVD 170 +T++A+ Sbjct: 288 ATIKALKTKAQ 298 >gi|126736137|ref|ZP_01751880.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. CCS2] gi|126714303|gb|EBA11171.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. CCS2] Length = 222 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%) Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G N + S +R+ +H T EP R +SGCVR+ Sbjct: 146 PGGPQNPLGSRAFYLFEGNRDTYLRIHGTNEPWTIG--GRA-SSGCVRM 191 >gi|222147064|ref|YP_002548021.1| hypothetical protein Avi_0061 [Agrobacterium vitis S4] gi|221734054|gb|ACM35017.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 232 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 64/213 (30%), Gaps = 46/213 (21%) Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 T +A + I+++ R + ++VN L V Sbjct: 51 DDSYGPVT-DAGYALPGIPIQKVNPKFRRQIIAFDTTERPGTIIVNTKERFLYYVLPNGK 109 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 +R + VG+ D + I P W P K+M + +Y+++ Sbjct: 110 AIRYGIGVGK-DGFAWQGQAYIAWKQEWPTWHPP-----KEMAVRKPEVAKYVENG---- 159 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEP 329 P N + + + ++ +H +PE Sbjct: 160 --------------------------MGPSISNPLGARAMYLFNDKGQDTLFRIHGSPEW 193 Query: 330 ILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +SGC+R+ +++IDL +L Sbjct: 194 ASIGT---AASSGCIRMINQDVIDLYSRVLPGK 223 >gi|163745335|ref|ZP_02152695.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] gi|161382153|gb|EDQ06562.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] Length = 221 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 42/170 (24%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + + + + + V V+ A + +E G +R V + R + P I R + Sbjct: 60 FLPQRVVANDSLRVGDVHVDAVARYVYHIEEGGTAMRYGVAIARGNLYEP-GTYTIKRKV 118 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P+W +++I++D + V Sbjct: 119 EWPHWTPTQNMIKRDP----------------ELYAGLQDGVN----------------- 145 Query: 300 QDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 PG N + S + +R+ +H TPE R +SGCVR+ Sbjct: 146 --PGPENPLGSRALYLFQGNRDTYLRIHGTPEARSIG--GRA-SSGCVRM 190 >gi|159184139|ref|NP_353087.2| hypothetical protein Atu0048 [Agrobacterium tumefaciens str. C58] gi|159139476|gb|AAK85872.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 237 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 64/205 (31%), Gaps = 46/205 (22%) Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 + + T +A + I ++ R + ++VN L + +G Sbjct: 57 NDVYGPVT-DAGYALPAIPINRVNEKYRRQIVEFQTSERPGTIIVNTRDRYLYYIMSGNR 115 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 +R + VG+ + + P W P K+M + +Y++ Sbjct: 116 AVRYGIGVGKAGFA-WAGEAYVAWKQEWPMWHPP-----KEMADRKPEVAKYVEAG---- 165 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEP 329 PG N + + + ++ +H +PE Sbjct: 166 --------------------------MGPGLSNPLGARAMYLFNEKGQDTLFRIHGSPEW 199 Query: 330 ILFNNVVRFETSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 200 ASIGT---AASSGCIRMINQDVIDL 221 >gi|291570491|dbj|BAI92763.1| glycoside hydrolase, family 25 [Arthrospira platensis NIES-39] Length = 455 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVD 158 + G V+ ++ +L G + F A E AV FQ G+ +G+ Sbjct: 195 ESIRKGERGPKVELMQTKLKKRGF--EPGVIDGIFGAGTERAVISFQDNKGIKEKNGVAG 252 Query: 159 SSTLEAMNVPVD 170 T A+ V+ Sbjct: 253 LKTWTALMGQVE 264 >gi|78184349|ref|YP_376784.1| hypothetical protein Syncc9902_0772 [Synechococcus sp. CC9902] gi|78168643|gb|ABB25740.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 163 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 52/159 (32%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + V++ L E+GKV + + +G + T + I P Sbjct: 34 ADMSIEVSLKHRYLTLFEDGKVIGKYPIAIGAPESPTIAGNFDIKSKDAAP--------- 84 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 + +KGK + PG N + Sbjct: 85 ---------------------VYHKKGKVI-------------------APGPDNPVGVR 104 Query: 312 KIEF--YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + + R+ +H T P N + GC+R+ N Sbjct: 105 YMPYVRFGRDEYAIHGTAWPSWVNLRA-AVSLGCIRMLN 142 >gi|325836775|ref|ZP_08166242.1| peptidase, S41 family [Turicibacter sp. HGF1] gi|325491153|gb|EGC93442.1| peptidase, S41 family [Turicibacter sp. HGF1] Length = 475 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L S+ + L G +D SAV+ FQ + + +G++D Sbjct: 384 GKSLEYDMVDSSIANAQNILTALGY--QVGRHDGYYDKSTVSAVENFQADNEILVTGIID 441 Query: 159 SSTLEAMNVPVDLRIR 174 + T + + + ++R Sbjct: 442 NKTASELTLALRNKVR 457 >gi|293375596|ref|ZP_06621870.1| peptidase, S41 family [Turicibacter sanguinis PC909] gi|292645813|gb|EFF63849.1| peptidase, S41 family [Turicibacter sanguinis PC909] Length = 475 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L S+ + L G +D SAV+ FQ + + +G++D Sbjct: 384 GKSLEYDMVDSSIANAQNILTALGY--QVGRHDGYYDKSTVSAVENFQADNEILVTGIID 441 Query: 159 SSTLEAMNVPVDLRIR 174 + T + + + ++R Sbjct: 442 NKTASELTLALRNKVR 457 >gi|86139671|ref|ZP_01058238.1| hypothetical protein MED193_02170 [Roseobacter sp. MED193] gi|85823562|gb|EAQ43770.1| hypothetical protein MED193_02170 [Roseobacter sp. MED193] Length = 220 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 57/169 (33%), Gaps = 45/169 (26%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R+ G + V+ A L +E +R V + R + P I R + Sbjct: 63 QRVVAKPGLVPGDIH--VDAVARYLYHIEESGTAMRYGVAIARGNLYEP-GVYTIKRKVR 119 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P+W +++I++ E W Sbjct: 120 WPHWTPTQNMIER----------------------------DPENARWADG--------M 143 Query: 301 DPGKINAMASTKIEFYSRN-NTY--MHDTPEPILFNNVVRFETSGCVRV 346 +PG NA+ S I Y + +TY +H TP P R +SGCVR+ Sbjct: 144 EPGPENALGSRAIYLYVGDRDTYLRIHGTPYPRSIG--GRA-SSGCVRM 189 >gi|147812598|emb|CAN66084.1| hypothetical protein VITISV_024635 [Vitis vinifera] Length = 353 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ + L++ G L ++ FD +ESAV +Q + GL +G DS T Sbjct: 55 RRGSRISGMAELKKYFNRFGYLGFQDGNVTDVFDTRLESAVAAYQAKLGLQVTGRFDSET 114 Query: 162 LEAMNVP 168 L M P Sbjct: 115 LSQMMSP 121 >gi|92116826|ref|YP_576555.1| negative regulator of AmpC, AmpD [Nitrobacter hamburgensis X14] gi|91799720|gb|ABE62095.1| negative regulator of AmpC, AmpD [Nitrobacter hamburgensis X14] Length = 289 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 8/77 (10%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P + L G+ V+ L++ L G S FD V FQ Sbjct: 191 GHWVRPSPIVRGDVLKTGSEGDDVRALQQSLARYGY---GIKASGTFDTPTMEVVTAFQR 247 Query: 148 RHGLD-PSGMVDSSTLE 163 + G+ D STL Sbjct: 248 HFRPERVDGVADQSTLN 264 >gi|296446913|ref|ZP_06888849.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296255588|gb|EFH02679.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 202 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 46/150 (30%) Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L N +R V VGR T H+ I R P W P +++++ Sbjct: 77 NRYLYLSMNDGHAIRYGVGVGRPG-FTWRGHTHIGRKESWPNWTPPSAMLRRR------- 128 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN- 320 P+ G N + + + YS Sbjct: 129 --------------------------------PDLPRHMSGGANNPLGARAMYLYSGKRD 156 Query: 321 --TYMHDTPEPILFNNVVRFETSGCVRVRN 348 +H + EP +SGC+R+ N Sbjct: 157 TMFRIHGSNEPWTIGQG---VSSGCIRMMN 183 >gi|160916038|ref|ZP_02078246.1| hypothetical protein EUBDOL_02066 [Eubacterium dolichum DSM 3991] gi|158432514|gb|EDP10803.1| hypothetical protein EUBDOL_02066 [Eubacterium dolichum DSM 3991] Length = 169 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 14/115 (12%) Query: 101 PLHLGNSSVSVQRLRERL---IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL +G++ + V +++ L G + F A +AV+ FQ L +G + Sbjct: 7 PLTIGSTGIGVNKMQAYLNMFQERGLITTKVNQDGDFGAITANAVREFQAYSRLPINGKI 66 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 D +T A + L ++ + + R + + LE + + Sbjct: 67 DDATWSA-----------IVNKLRELRIITNIPVASRSFFLAKGSQGLEVFKMQE 110 >gi|298694714|gb|ADI97936.1| carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus ED133] Length = 496 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G ++ FD +E+ +K FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSDLGYKVDNET--TQFDQALENQIKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|224053424|ref|XP_002297812.1| predicted protein [Populus trichocarpa] gi|222845070|gb|EEE82617.1| predicted protein [Populus trichocarpa] Length = 395 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ V+ +++ L G + + +F + E AV+ +Q G G++ Sbjct: 177 KTLRKGSEGEQVKEMQDALQKLGFYSGEEDMEYSSFSSGTERAVRTWQASLGASEDGIMT 236 Query: 159 SSTLEAM 165 + L+ + Sbjct: 237 TELLKRL 243 >gi|217977409|ref|YP_002361556.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217502785|gb|ACK50194.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 196 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 48/187 (25%), Gaps = 49/187 (26%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L R Q +++ L V +R V +G+ + + I Sbjct: 49 LAREIVAFPQPYPAGMIVIKQSERKLYLVTGDGRAIRYPVAIGKSGKA-WQGEATIQGKF 107 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W P + + + PNF Sbjct: 108 MRPSWSAPADVRR---------------------------------------DHPNFPAV 128 Query: 300 QDPG-KINAMASTKIEFYSRNNTYMHDTPE--PILFNNVVRFETSGCVRV--RNIIDLDV 354 G N M + + +H T + GC+R+ +++DL Sbjct: 129 IPGGSPRNPMGAAALTLSLSE-VAIHGTTASMRKSIGA---AASYGCIRMLNEDVVDLFG 184 Query: 355 WLLKDTP 361 + TP Sbjct: 185 RVSVGTP 191 >gi|315282856|ref|ZP_07871174.1| carboxypeptidase family protein [Listeria marthii FSL S4-120] gi|313613500|gb|EFR87326.1| carboxypeptidase family protein [Listeria marthii FSL S4-120] Length = 357 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + +D +G++ Sbjct: 269 STKVYQNGDFGDDVRTIETMLKALDY--NVGKVDGLYDIDTKYAVQRFQAANKIDVTGIM 326 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + ++++ L + K L++ Sbjct: 327 TGVTTDKLVELTQKHLKEIDPQLQKAKALVK 357 >gi|225452586|ref|XP_002275671.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 303 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVA-------FDAYVESAVKLFQMRHGLDPSGMV 157 G+ + ++++ L G L + + FD +ESA+K FQ + L P+G++ Sbjct: 45 GDKVEGIHKVKKYLQHFGYLGSTHSQTETQVDSEDHFDDALESAIKAFQTYYHLKPTGIL 104 Query: 158 DSSTLEAMNVP 168 D+ T M+ Sbjct: 105 DAPTATQMSRT 115 >gi|226530405|ref|NP_001147545.1| peptidoglycan binding domain containing protein [Zea mays] gi|195612094|gb|ACG27877.1| peptidoglycan binding domain containing protein [Zea mays] Length = 342 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ ++E L G + + +F + E AVK +Q G +G++ Sbjct: 137 RTLRTGAEGEDVRAMQEALQKLGFYSGEEDMEYSSFSSGTERAVKTWQATVGASENGVMT 196 Query: 159 SSTLEAM 165 S LE + Sbjct: 197 SELLEWL 203 >gi|83952910|ref|ZP_00961639.1| hypothetical protein ISM_17625 [Roseovarius nubinhibens ISM] gi|83835701|gb|EAP75001.1| hypothetical protein ISM_17625 [Roseovarius nubinhibens ISM] Length = 200 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 42/152 (27%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 V+ A L +E G +R V + R + P I R + P+W +S+I Sbjct: 57 VDAVARYLYHIEEGGTAMRYGVAIARGNLYEP-GVYIIKRKVRWPHWQPTQSMIN----- 110 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 +DP+ D + D +PG NA+ S + Y Sbjct: 111 ---RDPELYAD----IADG-----------------------MEPGPENALGSRALYLYV 140 Query: 318 RNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 + +H TP P R +SGCVR+ Sbjct: 141 GDRDTLLRIHGTPSPRSIG--GRA-SSGCVRM 169 >gi|307945526|ref|ZP_07660862.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] gi|307771399|gb|EFO30624.1| ErfK/YbiS/YcfS/YnhG family protein [Roseibium sp. TrichSKD4] Length = 221 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 52/221 (23%) Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY-------VLVNIPAAS 204 + +D L + + V+L I + +++ ++V+ P Sbjct: 34 PNAKRIDPEYLTMYRAMPEEKFPIPAVDLKDIDPVYFRQLVDYTAPEPVGTIIVDTPNRF 93 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L G +R V +GR + +RI P W P +I++ Sbjct: 94 LYLTMEGGKAMRYGVGIGRAGFE-WGGAARIAYKREWPTWTPPAEMIER----------- 141 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY 322 PE F PG N + + + R+ Y Sbjct: 142 -------------------------QPELEEFRNGMAPGIENPLGARALYIFEGGRDTLY 176 Query: 323 -MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 +H T E +SGCVR+ ++IIDL + +T Sbjct: 177 RVHGTAETWSIGK---AVSSGCVRLLNQDIIDLYNRVPNNT 214 >gi|269956385|ref|YP_003326174.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269305066|gb|ACZ30616.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 359 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 E+P R L G V +++ L +G L FD +AV+ +Q G++ Sbjct: 112 GEVPAFRDLFQGAKGADVAQVQRFLAGAGFLTGEADGD--FDPATATAVRAWQKSLGVER 169 Query: 154 SGMVDSSTLEAMNVPVD 170 G+V ++ + + Sbjct: 170 DGVVRAADIVFASALPA 186 >gi|126738468|ref|ZP_01754173.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. SK209-2-6] gi|126720267|gb|EBA16973.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. SK209-2-6] Length = 206 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 45/168 (26%) Query: 183 IKKLLEQK-MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + +LV+I + +L E+GK V D T ++I R + Sbjct: 63 KRWEPYFDNLRRGAILVDIDSRALHYWSEDGKDYRLFPSSVPLSDDLTRRGRTKIIRKVE 122 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W ++ +++P++ Sbjct: 123 GPGWAPTPNMR--------KRNPEW-------------------------------PAYI 143 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + + +H T + R ++GC+ + N Sbjct: 144 PPGPDNPLGTHALYLSWKF-YRIHGTHDTRKIG---RKSSNGCIGLYN 187 >gi|315303769|ref|ZP_07874271.1| carboxy- processing protease [Listeria ivanovii FSL F6-596] gi|313627857|gb|EFR96488.1| carboxy- processing protease [Listeria ivanovii FSL F6-596] Length = 509 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 421 SSKVYQEGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTKYAVERFQTANQLDVTGIM 478 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 479 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 509 >gi|220924065|ref|YP_002499367.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219948672|gb|ACL59064.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 190 Score = 50.0 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 46/164 (28%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 K G V+++ L + + ++ V VGR + + P W Sbjct: 53 WNSPYKPGT--VVISTSQRRLYYILPNQEAIQYGVGVGRQG-FSWSGTKTVTMKKEWPAW 109 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P ++++ P+ G Sbjct: 110 RPPGQMLKRR---------------------------------------PDLPRYMAGGM 130 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N + + + S +H + EP +SGC+R+ N Sbjct: 131 DNPLGARALYLGSS-LYRIHGSNEPETIGA---AVSSGCIRMTN 170 >gi|296087731|emb|CBI34987.3| unnamed protein product [Vitis vinifera] Length = 296 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVA-------FDAYVESAVKLFQMRHGLDPSGMV 157 G+ + ++++ L G L + + FD +ESA+K FQ + L P+G++ Sbjct: 38 GDKVEGIHKVKKYLQHFGYLGSTHSQTETQVDSEDHFDDALESAIKAFQTYYHLKPTGIL 97 Query: 158 DSSTLEAMNVP 168 D+ T M+ Sbjct: 98 DAPTATQMSRT 108 >gi|256395924|ref|YP_003117488.1| peptidoglycan-binding protein [Catenulispora acidiphila DSM 44928] gi|256362150|gb|ACU75647.1| Peptidoglycan-binding domain 1 protein [Catenulispora acidiphila DSM 44928] Length = 349 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--G 155 L G++ +V L+ L G ++ +D AV Q + G Sbjct: 275 SAGTLQAGDTGPNVSILQTLLDRLG-TPTWVPVTGVYDTRTTDAVAYVQNMLNITADPRG 333 Query: 156 MVDSSTLEAMNV 167 + T A+N Sbjct: 334 VCGPDTASAINT 345 >gi|296131671|ref|YP_003638918.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola sp. JR] gi|296030249|gb|ADG81017.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola potens JR] Length = 126 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 11/112 (9%), Positives = 25/112 (22%), Gaps = 7/112 (6%) Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 + N + + + YL+ N Sbjct: 1 MRKNTLYNDEPLYSNILIRVDVTNRLLYLERGNRTTQIYPVAVGKPSTPTPPGTYSIIEK 60 Query: 298 FRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN 348 G + + + + +H T ++GC+R+ N Sbjct: 61 TVNPGGI---LGTRWMGLDIPDGPYGIHGTWNRDSIGK---AVSNGCIRMYN 106 >gi|258624358|ref|ZP_05719307.1| VgrG protein [Vibrio mimicus VM603] gi|258583509|gb|EEW08309.1| VgrG protein [Vibrio mimicus VM603] Length = 1040 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 27/180 (15%) Query: 28 EKPIHASVLDEIINESYHSIVN----DRFDNFLARVDMGIDSDIPIISKETIAQ-----T 78 KP+ SV +I SD P ++ + Sbjct: 648 AKPVAESVQPDIAASMQSGAARVIDIAAIPTATPSSSDDTASDEPAAEEKAPERILKSDL 707 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 K + + SR GN+S V+ L++ LI G G F Sbjct: 708 LKPSDELEKLASRQ------ASAYRQGNNSEEVRLLQQALIKLGFDLGKAGADGDFGGKT 761 Query: 139 ESAVKLFQMRHG-----------LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 ++A++ FQ + G+V + TL A++ + + + M +K L Sbjct: 762 KTAIEQFQKSYQPSHQTHPSYSIGPVDGIVGNGTLLALDEALMDGWV-YENDEMDLKWLT 820 >gi|182677054|ref|YP_001831200.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182632937|gb|ACB93711.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 177 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 49/179 (27%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R +++ L + +R + +G+ + + + Sbjct: 31 AREIVKFSPDYPAGMIVIKQSERKLYLITGDGTAIRYPIAIGKTGKA-WKGEAFVAGKFV 89 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W P ++ + PNF Sbjct: 90 QPAWSPP------------------------EVVR---------------HDHPNFPDVI 110 Query: 301 DPG-KINAMASTKIEFYSRNNTYMHDTPE--PILFNNVVRFETSGCVRV--RNIIDLDV 354 G N M + I + + +H T + + GC+R+ +++DL Sbjct: 111 PGGAPNNPMGAAAITL-NLSEVAIHGTTDTMRKSVGT---AASYGCIRMYNEDVLDLFE 165 >gi|318060982|ref|ZP_07979703.1| hypothetical protein SSA3_23760 [Streptomyces sp. SA3_actG] Length = 266 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V +L ERL G FD +E A+ +Q+ G G Sbjct: 191 VTQAVLRRGDSGPEVAKLEERLRAVGIYP--GRDDGRFDRGLEYALMTYQVTRGASDEHG 248 Query: 156 MVDSSTLEAMN 166 + + T + Sbjct: 249 VYGADTRTKLE 259 >gi|284034110|ref|YP_003384041.1| peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] gi|283813403|gb|ADB35242.1| Peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] Length = 342 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 5/121 (4%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 LP R L G+ V +L + L G + Y AV+ +Q GL Sbjct: 98 GALPAYRRLTSGSEGPDVLQLEQNLQALGY--DGFTADDEYTLYTAEAVEQWQEDRGLAE 155 Query: 154 SG--MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 +G + A V V+ Q + + +L + V V + AA L + G Sbjct: 156 TGSVELGQVLFAAGAVRVESVQAQEGAQIGPGQPVLSYSGTKKAVTVKLEAADLRLAKKG 215 Query: 212 K 212 Sbjct: 216 A 216 >gi|265766267|ref|ZP_06094308.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253935|gb|EEZ25400.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 264 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + LG L L +G S S F ++ AV FQ ++ LD G+V Sbjct: 2 KTIKLGYEGEEALLLCRELKRNGY---SVKESRTFTQEMKEAVIDFQQKNKLDADGIVGY 58 Query: 160 STLEAMNVPVDLRIRQLQ 177 T E + +L Sbjct: 59 RTWEVLFFTGHPITERLT 76 >gi|53714241|ref|YP_100233.1| putative phage-related protein [Bacteroides fragilis YCH46] gi|60682298|ref|YP_212442.1| putative phage-related protein [Bacteroides fragilis NCTC 9343] gi|52217106|dbj|BAD49699.1| putative phage-related protein [Bacteroides fragilis YCH46] gi|60493732|emb|CAH08521.1| putative phage-related protein [Bacteroides fragilis NCTC 9343] gi|301163771|emb|CBW23326.1| putative phage-related protein [Bacteroides fragilis 638R] Length = 264 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + LG L L +G S S F ++ AV FQ ++ LD G+V Sbjct: 2 KTIKLGYEGEEALLLCRELKRNGY---SVKESRTFTQEMKEAVIDFQQKNKLDADGIVGY 58 Query: 160 STLEAMNVPVDLRIRQLQ 177 T E + +L Sbjct: 59 RTWEVLFFTGHPITERLT 76 >gi|160915933|ref|ZP_02078141.1| hypothetical protein EUBDOL_01956 [Eubacterium dolichum DSM 3991] gi|158432409|gb|EDP10698.1| hypothetical protein EUBDOL_01956 [Eubacterium dolichum DSM 3991] Length = 232 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%) Query: 90 SRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 R G P L +G+ V V L++ L G + L AF +A+ FQ Sbjct: 141 KRQGPPACRAGYPTLRIGSRGVYVLVLQDALNALGY--NTYTLDGAFGNNTRNALISFQR 198 Query: 148 RHGLDPSGMVDSSTLEAM 165 + L G+ +T + Sbjct: 199 NNNLRADGIAGCNTWTRL 216 >gi|86136794|ref|ZP_01055372.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. MED193] gi|85826118|gb|EAQ46315.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. MED193] Length = 206 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 45/171 (26%) Query: 180 LMRIKKLLEQK-MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINR 237 + + +LV+I + +L E+G V D T + I R Sbjct: 60 FRAKRWQPYFDHLRKGAILVDIDSRALHYWSEDGNNYRLFPSSVPLSDDLTRRGRTSITR 119 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 + P W ++ +++P++ Sbjct: 120 KVDGPGWAPTPNMR--------KRNPEW-------------------------------P 140 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + + +H T + R ++GC+ + N Sbjct: 141 AYIPPGPDNPLGTHALYLGWKY-YRIHGTHDTRKIG---RKSSNGCIGLYN 187 >gi|85707007|ref|ZP_01038096.1| hypothetical protein ROS217_03090 [Roseovarius sp. 217] gi|85668448|gb|EAQ23320.1| hypothetical protein ROS217_03090 [Roseovarius sp. 217] Length = 150 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 42/152 (27%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 V+ A L +E G +R V + R P I R + P+W +++I Sbjct: 7 VDAVARYLYHIEEGGTAMRYGVAIARGKLYEP-GVYTIKRKVRWPHWQPTQNMIN----- 60 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 +DP+ D + D +PG NA+ S + Y Sbjct: 61 ---RDPELYAD----IADG-----------------------MEPGPENALGSRALYLYV 90 Query: 318 RN-NTY--MHDTPEPILFNNVVRFETSGCVRV 346 + +TY +H TP+P R +SGCVR+ Sbjct: 91 GDRDTYLRIHGTPQPRSIG--GRA-SSGCVRM 119 >gi|182679961|ref|YP_001834107.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635844|gb|ACB96618.1| ErfK/YbiS/YcfS/YnhG family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 240 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 46/170 (27%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + G ++++ + L ++ + +R + VGR +R+ R P W+ Sbjct: 99 PNPTEEGPGTIVIDTKSRQLYYIQPDGMAIRYGIGVGREGFA-WKGTARVGRKAEWPRWI 157 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P+ ++++ P+ + G Sbjct: 158 PPKEMLKRR---------------------------------------PDLPTSMEGGVE 178 Query: 306 NAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 N + + + R+ + +H T EP +SGC+R+ N + Sbjct: 179 NPLGARALYLYQGERDTLFRIHGTNEPDTIGK---AVSSGCIRMMNADVI 225 >gi|295706441|ref|YP_003599516.1| spore cortex-lytic enzyme [Bacillus megaterium DSM 319] gi|294804100|gb|ADF41166.1| spore cortex-lytic enzyme [Bacillus megaterium DSM 319] Length = 310 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSST 161 G V L+ RL G + + F A++ FQ G+ G+ T Sbjct: 41 GAVGDDVIELQSRLQYLGYY--NGKIDGVFGWSTYWALRNFQYEFGIKKIDGLAGWQT 96 >gi|295703232|ref|YP_003596307.1| putative peptidoglycan binding domain-containing protein [Bacillus megaterium DSM 319] gi|294800891|gb|ADF37957.1| putative peptidoglycan binding domain protein [Bacillus megaterium DSM 319] Length = 139 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 8/80 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ +++ L + F E AVK FQ++ G G+V Sbjct: 68 ALGKGSAGEEVKTVQKSLGL--------NPDGYFGLETEQAVKEFQVKQGYTADGVVGPQ 119 Query: 161 TLEAMNVPVDLRIRQLQVNL 180 T +A+ + +L Sbjct: 120 TWDALVNTSKDTVGSTSNSL 139 >gi|254562718|ref|YP_003069813.1| hypothetical protein METDI4352 [Methylobacterium extorquens DM4] gi|254269996|emb|CAX25982.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 232 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 19/57 (33%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V ++ L+ G G +AV FQ GL G+ T A+ Sbjct: 3 VAEIQRALLARGYDLGKSGADGDAGPLTIAAVTAFQRSAGLVADGIAGPKTQAALQK 59 >gi|225427814|ref|XP_002275675.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 289 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ +Q++++ L G L S+ S FD +ES++K FQ + L+ +G +D+ Sbjct: 51 KKGDKREGIQKVKQYLQRYGYLSSTHYSQMGSDDFDDALESSLKAFQTFYHLNSTGTLDA 110 Query: 160 STLEAMNVP 168 T M+ P Sbjct: 111 PTATLMSRP 119 >gi|294501094|ref|YP_003564794.1| spore cortex-lytic enzyme [Bacillus megaterium QM B1551] gi|68444965|dbj|BAE02885.1| spore cortex-lytic enzyme precursor [Bacillus megaterium] gi|294351031|gb|ADE71360.1| spore cortex-lytic enzyme [Bacillus megaterium QM B1551] Length = 310 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 3/58 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSST 161 G V L+ RL G + + F A++ FQ G+ G+ T Sbjct: 41 GAVGDDVIELQSRLQYLGYY--NGKIDGVFGWSTYWALRNFQYEFGIKKIDGLAGWQT 96 >gi|225575004|ref|ZP_03783614.1| hypothetical protein RUMHYD_03083 [Blautia hydrogenotrophica DSM 10507] gi|225037779|gb|EEG48025.1| hypothetical protein RUMHYD_03083 [Blautia hydrogenotrophica DSM 10507] Length = 416 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHG 150 WP L +G + V++++E+L I P+ ++ +D ++AV+ FQ G Sbjct: 331 WPR---YDLDIGANGAKVRQIQEQLNAIAKSYPALPTVTVNGDYDEQTKNAVRQFQGVFG 387 Query: 151 LDPSGMVDSSTLEAMN 166 L +G+VD ST + Sbjct: 388 LPETGIVDYSTWYKIQ 403 >gi|83955785|ref|ZP_00964327.1| hypothetical protein NAS141_01831 [Sulfitobacter sp. NAS-14.1] gi|149204468|ref|ZP_01881434.1| Twin-arginine translocation pathway signal [Roseovarius sp. TM1035] gi|83839790|gb|EAP78967.1| hypothetical protein NAS141_01831 [Sulfitobacter sp. NAS-14.1] gi|149141967|gb|EDM30016.1| Twin-arginine translocation pathway signal [Roseovarius sp. TM1035] Length = 221 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 47/196 (23%) Query: 159 SSTLEAMNVPVDLRIRQ-----LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 + +A P L + + + + + + V+ A L +E G Sbjct: 34 KAAWDAQITPPGYNPATSNPWGLHPRFLPQRVITKDGLVAGDIHVDAVARYLYHIEEGGT 93 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 +R V + R P I R + P+W +++I +DP+ D + Sbjct: 94 AMRYGVAIARGKLYEP-GVYTIKRKVRWPHWQPTQNMI--------DRDPELYAD----I 140 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN-NTY--MHDTPEPI 330 D +PG NA+ S + Y + +TY +H TP+P Sbjct: 141 ADG-----------------------MEPGPENALGSRALYLYVGDRDTYLRIHGTPQPR 177 Query: 331 LFNNVVRFETSGCVRV 346 R +SGCVR+ Sbjct: 178 SIG--GRA-SSGCVRM 190 >gi|294677126|ref|YP_003577741.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter capsulatus SB 1003] gi|294475946|gb|ADE85334.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter capsulatus SB 1003] Length = 195 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 32/140 (22%), Gaps = 44/140 (31%) Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 G V + T ++ I R NP W S+I Sbjct: 82 EGADYRIYPTSVPKSPELTRTGYTEIVRKRENPSWTPTASMIAA---------------- 125 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 PG N + + + +H T + Sbjct: 126 ------------DPSLRPM------------PPGPDNPLGTRAMYLDWPAYI-IHGTHDT 160 Query: 330 ILFNNVVRFETSGCVRVRNI 349 R +SGC+ + N Sbjct: 161 RKIG---RKSSSGCIGLFNA 177 >gi|218510721|ref|ZP_03508599.1| hypothetical protein RetlB5_26833 [Rhizobium etli Brasil 5] Length = 215 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 44/161 (27%), Gaps = 19/161 (11%) Query: 206 EAVENGKVGLRSTVIVGRVDRQT---------PILHSRINRIMFNPYWVIPRSIIQKDMM 256 AV+NG + PI ++ Y ++ + + Sbjct: 22 TAVDNGVTYRSTNFAKIDKKWHRQVVKYFSSEPIGTVVVDTRHHFLYVIMENKTAIRYGV 81 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 + R+ ++ I + + P F N + + + Sbjct: 82 GVGREGFKWFGRATIDAKSLWPRWTPPP--EMRKRHPELPEFVDGGSPKNPLGPRAMYLH 139 Query: 317 SRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 H T EP +SGC+R+ + IDL Sbjct: 140 RDGVDTGYRFHGTLEPWSIGKD---ASSGCIRMFNEDAIDL 177 >gi|332707297|ref|ZP_08427350.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] gi|332354031|gb|EGJ33518.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] Length = 422 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V ++ +L D + E AV LFQ GL G+VDS T Sbjct: 61 LLKGSRGKEVALVQAKLKHLDFYD--GLEDGVYGEDTEKAVALFQESVGLRKLGVVDSVT 118 Query: 162 LEAMNVPVDLR 172 + + + Sbjct: 119 RKELEQAYAAK 129 >gi|329894374|ref|ZP_08270244.1| general secretion pathway protein A [gamma proteobacterium IMCC3088] gi|328923170|gb|EGG30493.1| general secretion pathway protein A [gamma proteobacterium IMCC3088] Length = 121 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+ + V + +R D F + V FQ GL GMV TL Sbjct: 41 LGSIGLDVVDIAQRFGRY-DRTNQVLADEVFTQALHERVIQFQAEQGLTTDGMVGRETLV 99 Query: 164 AMNVPVDLR 172 A+ ++ R Sbjct: 100 ALAAQMNER 108 >gi|316933177|ref|YP_004108159.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris DX-1] gi|315600891|gb|ADU43426.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris DX-1] Length = 288 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 86 QDILSRG--GWPE----LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + + + G W E +P L G V+ +++ L G +S ++D Sbjct: 187 RSLAASGVGLWVEPARIVPGPALKQGTEGEEVRLMQQALADYGY---RVPVSGSYDHATA 243 Query: 140 SAVKLFQMRHG-LDPSGMVDSSTLE 163 V FQ G+ D+STL Sbjct: 244 DVVTAFQRHFRPEKVDGIADASTLA 268 >gi|218459358|ref|ZP_03499449.1| hypothetical protein RetlK5_07652 [Rhizobium etli Kim 5] Length = 184 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 40/153 (26%), Gaps = 47/153 (30%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L + K +R V VGR + + I+ P W P + ++ Sbjct: 67 LYVIMENKTAIRYGVGVGREGFK-WFGRATIDAKSLWPRWTPPPEMRKRH---------- 115 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NT 321 P F N + + + Sbjct: 116 ----------------------------PELPEFVAGGSPKNPLGPRAMYLHRDGVDTGY 147 Query: 322 YMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 H T EP +SGC+R+ + IDL Sbjct: 148 RFHGTLEPWSIGKD---ASSGCIRMFNEDAIDL 177 >gi|271961885|ref|YP_003336081.1| hypothetical protein Sros_0306 [Streptosporangium roseum DSM 43021] gi|270505060|gb|ACZ83338.1| hypothetical protein Sros_0306 [Streptosporangium roseum DSM 43021] Length = 401 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 48/154 (31%), Gaps = 14/154 (9%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 LP R L G V++L L G + + AV +Q GLD Sbjct: 153 GSLPAYRTLAQGVEGPDVRQLERNLKALGY--GGFTVDEEYTYATAEAVMRWQEDRGLDE 210 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL----LEQKMGLRYVLVNIPAASLEAVE 209 +G V+ + + P +R+ LQ + L R V V + AA Sbjct: 211 TGTVELGHV--VFAPHAVRVESLQAGKGDLTAPGGKVLSYTGTTRAVTVELDAADQRLAR 268 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 G V V D T + +P Sbjct: 269 KGA-----KVTVTLPDDTTVKGRVDEVTTVIDPG 297 >gi|218528353|ref|YP_002419169.1| peptidoglycan-binding protein [Methylobacterium chloromethanicum CM4] gi|218520656|gb|ACK81241.1| Peptidoglycan-binding domain 1 protein [Methylobacterium chloromethanicum CM4] Length = 232 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 19/57 (33%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V ++ L+ G G +AV FQ GL G+ T A+ Sbjct: 3 VAEIQRALLARGYDLGPSGADGDAGPRTIAAVTAFQYSAGLVADGIAGPRTQAALQK 59 >gi|302760259|ref|XP_002963552.1| hypothetical protein SELMODRAFT_404832 [Selaginella moellendorffii] gi|300168820|gb|EFJ35423.1| hypothetical protein SELMODRAFT_404832 [Selaginella moellendorffii] Length = 433 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V+ L+E L G + +F + + AVK +Q G G+V Sbjct: 230 ARSLKYGAEGDDVKLLQEALAKLGFYCGDDDMEYASFSSGTDRAVKSWQSSIGAAEDGIV 289 Query: 158 DSSTLEAM 165 + L + Sbjct: 290 TAQVLSQL 297 >gi|302799535|ref|XP_002981526.1| hypothetical protein SELMODRAFT_421058 [Selaginella moellendorffii] gi|300150692|gb|EFJ17341.1| hypothetical protein SELMODRAFT_421058 [Selaginella moellendorffii] Length = 433 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V+ L+E L G + +F + + AVK +Q G G+V Sbjct: 230 ARSLKYGAEGDDVKLLQEALAKLGFYCGDDDMEYASFSSGTDRAVKSWQSSIGAAEDGIV 289 Query: 158 DSSTLEAM 165 + L + Sbjct: 290 TAQVLSQL 297 >gi|225427820|ref|XP_002275830.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 287 Score = 49.6 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ +Q++++ L G L S+ S FD +ES++K FQ + L+ +G +D+ Sbjct: 51 KKGDKREGIQKVKQYLQRYGYLSSTHYSQMGSDDFDDALESSLKAFQTFYHLNSTGTLDA 110 Query: 160 STLEAMNVP 168 T M+ P Sbjct: 111 PTATLMSKP 119 >gi|327485350|gb|AEA79756.1| VgrG-3 protein [Vibrio cholerae LMA3894-4] Length = 839 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 12/100 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G+V TL A++ + + + M +K L Sbjct: 782 YSIGPVDGIVGKGTLLALDEALMDGWV-YENDEMDLKWLT 820 >gi|154685699|ref|YP_001420860.1| XlyA [Bacillus amyloliquefaciens FZB42] gi|154351550|gb|ABS73629.1| XlyA [Bacillus amyloliquefaciens FZB42] Length = 292 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 4/69 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V +++ L + G+ + AV FQ +GL G+ Sbjct: 222 EPYTSGEKVYQVQNALAALYFYPEKGAVNNGIDGIYGPKTADAVARFQSVNGLTSDGVYG 281 Query: 159 SSTLEAMNV 167 + + + Sbjct: 282 PAVKAKILM 290 >gi|39936601|ref|NP_948877.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39650457|emb|CAE28980.1| Putative peptidoglycan binding domain 1:N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodopseudomonas palustris CGA009] Length = 261 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 86 QDILSRG--GWPE----LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + + + G W E +P L G V+ L++ L G ++ ++D Sbjct: 160 RSLAASGVGLWVEPARIVPGPALKQGTEGDEVRLLQQALADYGY---RVPVNGSYDHATT 216 Query: 140 SAVKLFQMRHG-LDPSGMVDSSTLE 163 V FQ G+ D+STL Sbjct: 217 DVVTAFQRHFRPEKVDGIADASTLA 241 >gi|89070991|ref|ZP_01158214.1| probable carnitine operon oxidoreductase [Oceanicola granulosus HTCC2516] gi|89043454|gb|EAR49669.1| probable carnitine operon oxidoreductase [Oceanicola granulosus HTCC2516] Length = 83 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSG 342 ++ + + G N + + + R+ Y +H TP+P ++G Sbjct: 2 IEREPEKYERYAGGVPGGPDNPLGARALYLYRNGRDTLYRIHGTPQPWTVGLSS---SNG 58 Query: 343 CVRVRN 348 C+R+ N Sbjct: 59 CIRMYN 64 >gi|83954982|ref|ZP_00963660.1| hypothetical protein NAS141_00885 [Sulfitobacter sp. NAS-14.1] gi|83840708|gb|EAP79880.1| hypothetical protein NAS141_00885 [Sulfitobacter sp. NAS-14.1] Length = 222 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 51/192 (26%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 D +T V + ++ N G + V+ A L +++ +R Sbjct: 48 DPATTNPWGVAPRFLPQLVEAN-------PGLTPGDIH--VDAVARYLYHIQDNGTAMRY 98 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V + R + P I R P W +++I R+DP+ + + D Sbjct: 99 GVAIARGNLYEP-GTYSIKRKAKWPTWTPTQNMI--------RRDPELYEQH----ADG- 144 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNN 334 D G N + S + +R+ +H +P P Sbjct: 145 ----------------------MDAGPQNPLGSRALYLFVGNRDTYLRIHGSPNPQSIG- 181 Query: 335 VVRFETSGCVRV 346 R +SGCVR+ Sbjct: 182 -GRA-SSGCVRM 191 >gi|302876661|ref|YP_003845294.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307687336|ref|ZP_07629782.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302579518|gb|ADL53530.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 444 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 8/117 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPS 154 P PL +G S V+ ++ L IS + +D AVK FQ L S Sbjct: 328 PGYPLGVGESGEYVKTVQTYLNFISEYYPVIDKIDVNGHYDIKTAIAVKKFQELFSLSGS 387 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIK-----KLLEQKMGLRYVLVNIPAASLE 206 G+VD +T ++ + ++ R++ + + Y + I LE Sbjct: 388 GIVDFATWYSIAKLYVSLATTAENDVNRLRAFREGIFIPPTIDEEYGYIPIIKYPLE 444 >gi|319407603|emb|CBI81253.1| putative membrane-bound lytic murein transglycosylase [Bartonella sp. 1-1C] Length = 418 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ RL GD D + + A+K FQ+RHGL+ +G + TL + Sbjct: 364 IELQSRLAKLGDYDGE--IDGKIGTATKKAIKAFQLRHGLEENGYPNYETLSHIRK 417 >gi|119486197|ref|ZP_01620257.1| carboxypeptidase [Lyngbya sp. PCC 8106] gi|119456688|gb|EAW37817.1| carboxypeptidase [Lyngbya sp. PCC 8106] Length = 536 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 V++L+E L G + F ++AV+ FQ GL G+V Sbjct: 206 MQGERVRQLQEDLANVG---IAITADGIFGKQTDAAVRKFQAEQGLQVDGIVG 255 >gi|254501042|ref|ZP_05113193.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222437113|gb|EEE43792.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 249 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S +++++ L G + +A+K F++ GL +G + TLE + Sbjct: 182 DSDPRLKKIQYALSELGY--GPLTVDGLMGTNTAAALKRFELDRGLPITGEANPQTLERL 239 Query: 166 NVPVDLR 172 + R Sbjct: 240 EMVSGQR 246 >gi|15966561|ref|NP_386914.1| putative membrane-bound lytic murein transglycosylase protein [Sinorhizobium meliloti 1021] gi|307300402|ref|ZP_07580182.1| lytic murein transglycosylase [Sinorhizobium meliloti BL225C] gi|307318267|ref|ZP_07597702.1| lytic murein transglycosylase [Sinorhizobium meliloti AK83] gi|15075832|emb|CAC47387.1| Membrane-bound lytic murein transglycosylase precursor [Sinorhizobium meliloti 1021] gi|306895949|gb|EFN26700.1| lytic murein transglycosylase [Sinorhizobium meliloti AK83] gi|306904568|gb|EFN35152.1| lytic murein transglycosylase [Sinorhizobium meliloti BL225C] Length = 405 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 9/93 (9%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + IA Y + R WP P L + L+ RL G D + F Sbjct: 322 VGLLADQIAGYAGMQQR--WPR-PDGSLDI----SEKFELQNRLKELGYYDGE--VDGNF 372 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + ++A++ FQ ++GL P G L A+ Sbjct: 373 GSGSKAAIQAFQNQNGLAPDGEPTQHLLRALRR 405 >gi|229527893|ref|ZP_04417284.1| VgrG protein [Vibrio cholerae 12129(1)] gi|229334255|gb|EEN99740.1| VgrG protein [Vibrio cholerae 12129(1)] Length = 1037 Score = 49.6 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 20/160 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 G+V TL A++ + + + M +K L E Sbjct: 782 YSIGPVDGIVGKGTLLALDEALMDGWV-YENDEMDLKWLTVP--------KGQLTFDAEG 832 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + S + R + I +S + P Sbjct: 833 NDVDSSTFFSRKVHVPNMRGSVIGNSGVTIGRGLDLGNPP 872 >gi|330468307|ref|YP_004406050.1| peptidoglycan-binding domain 1 protein [Verrucosispora maris AB-18-032] gi|328811278|gb|AEB45450.1| peptidoglycan-binding domain 1 protein [Verrucosispora maris AB-18-032] Length = 336 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+L R L G++ V+ L+ ++G L + F E+ V+ FQ L Sbjct: 184 PKLGDRVLRRGSTGSDVRELQT---LAGRLGGDLAVDGDFGPRTETWVRDFQKAQRLTVD 240 Query: 155 GMVDSS 160 G+V + Sbjct: 241 GVVGAQ 246 Score = 45.0 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R + G++ V ++ G+ + +FDA ES V+ +Q G+ G+V Sbjct: 268 SRTVRRGSTGEDVAFVQR---FVGE-RRCGPATGSFDAKTESGVRWYQGMRGITVDGVVG 323 Query: 159 SSTLEAMNV 167 T M V Sbjct: 324 PLTWRQMGV 332 >gi|145593093|ref|YP_001157390.1| peptidoglycan binding domain-containing protein [Salinispora tropica CNB-440] gi|145302430|gb|ABP53012.1| Peptidoglycan-binding domain 1 protein [Salinispora tropica CNB-440] Length = 334 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 30/146 (20%) Query: 36 LDEIINESYHSIVND--RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 + + + + A + + + I+ ET+ Q K +GG Sbjct: 127 RGQAVTSDSSHLWHIHISVHRKYADDMTAMRAILSILKGETVEQWRKG---------QGG 177 Query: 94 WPELPIRP--------LH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 P P P L V +++ F SAV Sbjct: 178 TPSPPPLPDQAAGSRMLRLTVPYARGTDVAAVQD--------AVGATRDGVFGPKTRSAV 229 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 +Q GL P G+V T + Sbjct: 230 IKYQRARGLTPDGIVGPKTWATLLGS 255 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ ++ + F S V+ +Q GL P G+V T + Sbjct: 274 MRGTDVEAVQRFIGA-----RCGAADGIFGTKTASGVRWYQRMRGLTPDGIVGPKTWAPI 328 Query: 166 NVPV 169 + Sbjct: 329 VRTI 332 >gi|78185249|ref|YP_377684.1| hypothetical protein Syncc9902_1682 [Synechococcus sp. CC9902] gi|78169543|gb|ABB26640.1| conserved hypothetical protein [Synechococcus sp. CC9902] Length = 163 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 51/158 (32%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + V +G++ V +G TP I +P +V +S +K++ Sbjct: 43 REISVVLDGRMRGSWPVAIGDPKTPTPQGEFSILTKKIDPIYVSKKSGQRKEL------- 95 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY-SRNNT 321 G + + + F+ + Sbjct: 96 ---------------------------------------SGPTSPIGDRYLAFHRNGRGE 116 Query: 322 -YMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 +H TP P + GCVR+ N + L + Sbjct: 117 FGIHGTPWPHWV-KTRAAVSLGCVRMLNVHVRQLFDLV 153 >gi|17228635|ref|NP_485183.1| hypothetical protein all1140 [Nostoc sp. PCC 7120] gi|17130486|dbj|BAB73097.1| all1140 [Nostoc sp. PCC 7120] Length = 313 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L+ R + + A E+A+K FQ ++GL G++ + + + Sbjct: 262 GPVVRYLQFR--------VGVEVDGIYGAQTEAAIKRFQRQNGLLADGIIGPMSWQRL 311 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P P N S+ RL++ RL I+G + S + + + A++ FQ GL+ Sbjct: 174 PVPSVPDEEQNIDTSILRLQKSLNRLKITGRSNKSLVENSQLNTETKFAIERFQGIVGLE 233 Query: 153 PSGMVDSSTLEAMNVPVDLRI 173 +G+V+ +T A+N+ + RI Sbjct: 234 KTGIVNEATWNAINLILAKRI 254 >gi|114707493|ref|ZP_01440389.1| N-acetylmuramoyl-L-alanine amidase [Fulvimarina pelagi HTCC2506] gi|114537052|gb|EAU40180.1| N-acetylmuramoyl-L-alanine amidase [Fulvimarina pelagi HTCC2506] Length = 258 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 30/92 (32%), Gaps = 5/92 (5%) Query: 80 KAIAFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAF 134 A A Y+ +L R + L G V R L I D AF Sbjct: 128 DATAEYKGLLGRAAPVLDAMADEILERGERGPDVAAWRRDLDIWRDRIAHPWGMPDGDAF 187 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 D VE A FQ G+ G V T E M Sbjct: 188 DHTVELATLHFQKTRGIVADGKVGPQTREEME 219 >gi|254689361|ref|ZP_05152615.1| hypothetical protein Babob68_04147 [Brucella abortus bv. 6 str. 870] gi|254701878|ref|ZP_05163706.1| hypothetical protein Bsuib55_13627 [Brucella suis bv. 5 str. 513] gi|254704424|ref|ZP_05166252.1| hypothetical protein Bsuib36_10950 [Brucella suis bv. 3 str. 686] gi|254706680|ref|ZP_05168508.1| hypothetical protein BpinM_06754 [Brucella pinnipedialis M163/99/10] gi|254710212|ref|ZP_05172023.1| hypothetical protein BpinB_08057 [Brucella pinnipedialis B2/94] gi|254714209|ref|ZP_05176020.1| hypothetical protein BcetM6_12826 [Brucella ceti M644/93/1] gi|254717645|ref|ZP_05179456.1| hypothetical protein BcetM_14825 [Brucella ceti M13/05/1] gi|256031706|ref|ZP_05445320.1| hypothetical protein BpinM2_13829 [Brucella pinnipedialis M292/94/1] gi|256061219|ref|ZP_05451370.1| hypothetical protein Bneo5_12758 [Brucella neotomae 5K33] gi|256255107|ref|ZP_05460643.1| hypothetical protein BcetB_12606 [Brucella ceti B1/94] gi|260168838|ref|ZP_05755649.1| hypothetical protein BruF5_10826 [Brucella sp. F5/99] Length = 215 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINA 307 + ++ +A+ +Q ++ I E + + E ++ + F D G N Sbjct: 96 TTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNP 155 Query: 308 MASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + S + + N +H T +P + ++GC R+ +++DL + T Sbjct: 156 LGSRAMYLFQGNKDTYIRIHGTVQPWTIGSS---ASNGCFRMINEDVMDLYDRVTLGTE 211 >gi|152977393|ref|YP_001376910.1| carboxyl-terminal protease [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026145|gb|ABS23915.1| carboxyl-terminal protease [Bacillus cytotoxicus NVH 391-98] Length = 478 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ ++ L G + F ESAVK FQ + L+ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQQMLKSLGYVP--GREDGYFSKETESAVKAFQNANQLEATGKLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQNKIIEKIRS 462 >gi|297562125|ref|YP_003681099.1| peptidoglycan-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846573|gb|ADH68593.1| Peptidoglycan-binding domain 1 protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 193 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G++ V ++ L + + E AV+ Q G+ G+ + Sbjct: 124 FRRGDTGPVVTMIQRELNAK--FNAHLATDGVYGPATERAVRAAQEHFGIGVDGVFGPVS 181 Query: 162 LEAM 165 A+ Sbjct: 182 FHAV 185 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WPE LG+SS+ V + L+ SG+++P L++ FD + + +Q GL Sbjct: 50 WPE-----YTLGDSSIDVYA-AKMLLSSGEINP-GELNLEFDQDLHDTLVTYQEAFGLHN 102 Query: 154 SGMVDSSTLEAMN 166 G ++ T E Sbjct: 103 DGDLNPDTWEHFQ 115 >gi|327440155|dbj|BAK16520.1| periplasmic protease [Solibacillus silvestris StLB046] Length = 500 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + + S++ L + G + FD E+A+K +Q + L+ +G++ Sbjct: 403 PSQQYEKEANHASIKTAERILEVLGY--EPGKVDTQFDGATEAALKAYQQDNDLEVTGIL 460 Query: 158 DSSTLEAMNVPVDLRIR----QLQVNLMRIKKLLEQKMGL 193 T A+ + +++ Q+ + E+ Sbjct: 461 TGDTTYALMDAISEKLKTEDPQILKAKELLDIKPEETTNE 500 >gi|312114454|ref|YP_004012050.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodomicrobium vannielii ATCC 17100] gi|311219583|gb|ADP70951.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodomicrobium vannielii ATCC 17100] Length = 263 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 8/82 (9%) Query: 87 DILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + G W P + L G+ +V+ L+++L G ++ A+D V Sbjct: 168 ALGGIGHWVEPAPIVEGDALDTGSCGAAVRELQKKLAAYGY---GIDVTGAYDDATRIVV 224 Query: 143 KLFQMRHGLD-PSGMVDSSTLE 163 + FQ G D STL+ Sbjct: 225 RAFQRHFRPALVDGRADPSTLK 246 >gi|212640371|ref|YP_002316891.1| periplasmic protease [Anoxybacillus flavithermus WK1] gi|212561851|gb|ACJ34906.1| Periplasmic protease [Anoxybacillus flavithermus WK1] Length = 491 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +PL ++ V+ ++ L G F E AV+ FQ +GL +G +D Sbjct: 401 DKPLAYDMNNEQVKSAQQMLKGLGF--DPGREDGYFSKQTEQAVQAFQKANGLQATGKID 458 Query: 159 SSTLEAMNVPVDLRIR 174 T + V +R Sbjct: 459 KQTANMLQTKVMEAVR 474 >gi|209886236|ref|YP_002290093.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] gi|209874432|gb|ACI94228.1| ErfK/YbiS/YcfS/YnhG [Oligotropha carboxidovorans OM5] Length = 190 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIID 351 P+ G N + + + +H + EP +SGC R+ ++ID Sbjct: 120 PDLPRHMPGGPDNPLGARALYLG-STLYRIHGSNEPETIGQ---AVSSGCFRMVNEDVID 175 Query: 352 L 352 L Sbjct: 176 L 176 >gi|189218117|ref|YP_001938759.1| hypothetical protein Minf_0100 [Methylacidiphilum infernorum V4] gi|189184975|gb|ACD82160.1| Uncharacterized protein, ErfK family [Methylacidiphilum infernorum V4] Length = 298 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 53/198 (26%), Gaps = 39/198 (19%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 P R+ + L I ++ + + + + L + G++ + + G D Sbjct: 133 KKPGTERVYTVSRILPAIWWNIDPSQKVTKLEIVLSEQKLYVYQGGRLAAIAPICSGTKD 192 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 TP+ + I K+++ + ++ + + Sbjct: 193 HPTPLGRFAV---------------INKEILHRSNKYGCFVDSKGKIIYANATVGMTPPA 237 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 P F R + +H P + GCVR Sbjct: 238 GLHYEPADMPFFLRLT----------------DDGVGLHGGYLPGY------AASHGCVR 275 Query: 346 VRN--IIDLDVWLLKDTP 361 + DL + TP Sbjct: 276 LPKSFAQDLYPLVSLGTP 293 >gi|2632002|emb|CAA05561.1| N-Acetylmuramoyl-L-alanine amidase [Bacillus subtilis] Length = 103 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 104 LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 S V +++ L + G+ + AV FQ +GL G+ Sbjct: 33 PYTSGEHVFQVQRALAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGP 92 Query: 160 STLEAMNV 167 +T E + Sbjct: 93 ATKEKIAA 100 >gi|21553383|gb|AAM62476.1| proteinase like protein [Arabidopsis thaliana] Length = 364 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V L+ L G + D S+ S FD +ESA+ L+Q GL +G +D+ST Sbjct: 62 QIGSHVSGVSELKRYLHRFGYVKDGSEIFSDVFDGPLESAISLYQENLGLPITGRLDTST 121 Query: 162 LEAMNVP 168 + M++P Sbjct: 122 VTLMSLP 128 >gi|15235820|ref|NP_193397.1| matrix metalloproteinase, putative [Arabidopsis thaliana] gi|2245019|emb|CAB10439.1| proteinase like protein [Arabidopsis thaliana] gi|7268414|emb|CAB78706.1| proteinase like protein [Arabidopsis thaliana] gi|332658379|gb|AEE83779.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana] Length = 364 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V L+ L G + D S+ S FD +ESA+ L+Q GL +G +D+ST Sbjct: 62 QIGSHVSGVSELKRYLHRFGYVNDGSEIFSDVFDGPLESAISLYQENLGLPITGRLDTST 121 Query: 162 LEAMNVP 168 + M++P Sbjct: 122 VTLMSLP 128 >gi|28393482|gb|AAO42162.1| putative proteinase [Arabidopsis thaliana] Length = 364 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V L+ L G + D S+ S FD +ESA+ L+Q GL +G +D+ST Sbjct: 62 QIGSHVSGVSELKRYLHRFGYVNDGSEIFSDVFDGPLESAISLYQENLGLPITGRLDTST 121 Query: 162 LEAMNVP 168 + M++P Sbjct: 122 VTLMSLP 128 >gi|170750859|ref|YP_001757119.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170657381|gb|ACB26436.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 187 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 48/188 (25%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + ++K G ++V+ L V G +R V VGR + + Sbjct: 46 ETVAWTGKEKPGT--IVVSTRQRRLYYVLGGGAAVRYGVGVGRQG-FSWSGTKTVTMKKE 102 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W P+ ++ + P+ Sbjct: 103 WPDWRPPQQMLARR---------------------------------------PDLPRYM 123 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLK 358 G+ N + + + S +H + EP +SGC+R+ N ++DL + Sbjct: 124 AGGQDNPLGARALYLGSS-LYRIHGSNEPETMGA---AVSSGCIRMTNKDVVDLYDRVRV 179 Query: 359 DTPTWSRY 366 T R Sbjct: 180 GTKVVVRD 187 >gi|318079927|ref|ZP_07987259.1| hypothetical protein SSA3_25371 [Streptomyces sp. SA3_actF] Length = 93 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V +L ERL G FD +E A+ +Q+ G G Sbjct: 18 VTQAVLRRGDSGPEVAKLEERLRAVGIYP--GRDDGRFDRGLEYALMTYQVTRGASDEHG 75 Query: 156 MVDSSTLEAMN 166 + + T + Sbjct: 76 VYGADTRTKLE 86 >gi|74317235|ref|YP_314975.1| hypothetical protein Tbd_1217 [Thiobacillus denitrificans ATCC 25259] gi|74056730|gb|AAZ97170.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 164 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 Y+H T E + GCVR++N +L + T Sbjct: 116 SHDRYIYIHGTNEEHRIGTP---ASHGCVRMKNADVAELFELVEVGTE 160 >gi|327189772|gb|EGE56916.1| hypothetical protein RHECNPAF_550040 [Rhizobium etli CNPAF512] Length = 190 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G +N + + I Y + Y +H T E F +SGC R+ Sbjct: 113 KARAAGLPDLVPAGPLNPLGARGIYLYKGGTDTLYRIHGTNEQSTVG---GFASSGCFRM 169 Query: 347 RNIIDL 352 N + Sbjct: 170 SNADVI 175 >gi|153954450|ref|YP_001395215.1| hydrolase [Clostridium kluyveri DSM 555] gi|219855040|ref|YP_002472162.1| hypothetical protein CKR_1697 [Clostridium kluyveri NBRC 12016] gi|146347331|gb|EDK33867.1| Predicted hydrolase [Clostridium kluyveri DSM 555] gi|219568764|dbj|BAH06748.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 279 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V L+++L + G L + +D AV Q G++ T Sbjct: 213 IAKGHKSHIVLWLQQKLEMWGYLKKGSYTDMIYDEPTFQAVTELQKNWERPTDGVLKIET 272 Query: 162 LE 163 Sbjct: 273 WN 274 >gi|332560304|ref|ZP_08414626.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides WS8N] gi|332278016|gb|EGJ23331.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides WS8N] Length = 260 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 44/189 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + L + +R + ++V+ A L V+ G+ LR + VGR R Sbjct: 56 PAVPPQYLSADKVRREVDYFTDRPPGTIVVDPYARYLYLVQPGQRALRYAIAVGREGR-G 114 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W+ +S+I + E+ Sbjct: 115 FSGEAVIPIKREWPRWIPTKSMIAE----------------------------DPEQYGP 146 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 D G N + + + + ++ Y +H T + ++GC+R Sbjct: 147 WKDG-------MDGGLSNPLGARALYLHRDGKDTYYRIHGTNDVSSIGK---ATSAGCIR 196 Query: 346 V--RNIIDL 352 + ++I+DL Sbjct: 197 LWNQDILDL 205 >gi|86158504|ref|YP_465289.1| peptidoglycan-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775015|gb|ABC81852.1| peptidoglycan-binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 135 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 9/88 (10%) Query: 86 QDILSRGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + + RG P +P P L G LR+R G L D +A+ Sbjct: 41 RGVPPRGERPRVPASPEALLAPGAVGEIQDALRDR----GYL--GAHRRGELDRATSAAL 94 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 + FQ GL +G D TL ++V Sbjct: 95 RRFQEAQGLAATGAPDRETLRRLHVDPA 122 >gi|86360586|ref|YP_472474.1| hypothetical protein RHE_PE00312 [Rhizobium etli CFN 42] gi|86284688|gb|ABC93747.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 187 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 6/64 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G +N + + I Y + Y +H T E F +SGC R+ Sbjct: 110 KARAVGLPDLVPAGPLNPLGARGIYLYKGGTDTLYRIHGTNEQSTVG---GFASSGCFRM 166 Query: 347 RNII 350 N Sbjct: 167 SNAD 170 >gi|75910593|ref|YP_324889.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704318|gb|ABA23994.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 313 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L+ R + + A E+A+K FQ ++GL G++ + + + Sbjct: 262 GPVVRYLQFR--------VGVEVDGIYGAQTEAAIKRFQRQNGLLADGIIGPMSWQKL 311 Score = 43.9 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P P N S+ RL++ RL I+ + S + +A + A++ FQ GL+ Sbjct: 174 PVPSVPDEEQNIDTSILRLQKSLNRLKITDRSNKSLVENGQLNAETKFAIERFQGIVGLE 233 Query: 153 PSGMVDSSTLEAMNVPVDLRI 173 +G+V+ +T A+N+ + RI Sbjct: 234 KTGIVNEATWNAINLILAKRI 254 >gi|304405442|ref|ZP_07387101.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] gi|304345481|gb|EFM11316.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] Length = 293 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 7/75 (9%) Query: 101 PLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM- 156 L G VQ+L+ +L G F AV F+ + L +G Sbjct: 15 SLDPGTFKPEVQQLQSQLNALGYKGSTQKPLVADGKFGPNTLYAVNAFKAANKLGNTGAS 74 Query: 157 ---VDSSTLEAMNVP 168 V T +A+ P Sbjct: 75 QGKVGPQTWKALFSP 89 >gi|254459887|ref|ZP_05073303.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacterales bacterium HTCC2083] gi|206676476|gb|EDZ40963.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacteraceae bacterium HTCC2083] Length = 190 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 46/168 (27%) Query: 202 AASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 + +L +G V D T ++ I R P W P +++ Sbjct: 67 SRALNYWNADGSDYRVYPTSVPMTDELTKRGYTEIVRKKVGPTWT-PTKAMRE------- 118 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP + G N + S + Sbjct: 119 RDPA-------------------------------LPDFMEAGAGNPLGSHAMYLSWP-A 146 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 +H T + R +SGC+ + N + L TP ++ + Sbjct: 147 YLIHGTHDTRKIG---RRSSSGCIGLYN-EKIAE-LFAITPIGTQVRV 189 >gi|315640706|ref|ZP_07895808.1| S41A carboxy-terminal processing protease [Enterococcus italicus DSM 15952] gi|315483461|gb|EFU73955.1| S41A carboxy-terminal processing protease [Enterococcus italicus DSM 15952] Length = 475 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + LG S +V+ L L G K + ++AVK Q + L + Sbjct: 384 PLPTDIEMALGLESSNVKSLNTYLAGLGY----KTSGDKYTEETQAAVKDIQKKKQLTVT 439 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G+VD T EA++ +++ Sbjct: 440 GIVDKKTAEAISQAAADQLKT 460 >gi|227823392|ref|YP_002827365.1| putative peptidoglycan-binding protein [Sinorhizobium fredii NGR234] gi|227342394|gb|ACP26612.1| putative peptidoglycan-binding protein [Sinorhizobium fredii NGR234] Length = 405 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP P L + L+ RL G D + F + ++A++ FQ ++GL P Sbjct: 339 WPR-PDGSLDI----SEKFELQNRLKELGYYDGE--VDGNFGSGSKAAIQAFQTQNGLTP 391 Query: 154 SGMVDSSTLEAMNV 167 G + L A+ Sbjct: 392 DGEPTQNLLRALRK 405 >gi|170746489|ref|YP_001752749.1| lytic murein transglycosylase [Methylobacterium radiotolerans JCM 2831] gi|170653011|gb|ACB22066.1| lytic murein transglycosylase [Methylobacterium radiotolerans JCM 2831] Length = 396 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ L+ L +G D + AV+ +Q+ GL G + L+ + Sbjct: 333 GPGLRALQTGLAAAGFYD--GPTDGRAGPKLREAVRRYQISAGLPADGYATPALLDRVTG 390 Query: 168 PVDLR 172 R Sbjct: 391 KAAPR 395 >gi|17987652|ref|NP_540286.1| hypothetical protein BMEI1369 [Brucella melitensis bv. 1 str. 16M] gi|17983365|gb|AAL52550.1| protein ybis precursor [Brucella melitensis bv. 1 str. 16M] Length = 211 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V + LR V +GR Sbjct: 47 PAIPIQKMDTRYLRQVVPDPTGEMPGTIVIDTANRFCYLVLDNGQALRYGVGIGREGFA- 105 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 106 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 137 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 138 SAKNGGM-----APGLKNPLGARALYIFKDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 189 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + TP Sbjct: 190 FLNQDIIDLYDRVPAKTP 207 >gi|256395739|ref|YP_003117303.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361965|gb|ACU75462.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 239 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L+ L +G G+ F E AV Q LD G V T Sbjct: 176 LQVDMWGAEVAELQCLLQRAGF--SPGGIDGNFGPLTELAVIKAQKADQLDVDGQVGPKT 233 Query: 162 LEAMNV 167 A+ Sbjct: 234 WAALRA 239 >gi|319778023|ref|YP_004134453.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171742|gb|ADV15279.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 720 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 6/99 (6%) Query: 108 SVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V L+ L D + F + SAVK FQ +G+ G V T A+ Sbjct: 73 DRRVALLQSVLT---DKSVYASAIDGVFGSQTASAVKSFQSTYGMPVDGTVGMQTGSALG 129 Query: 167 VPV--DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 +P + R L K E LV I Sbjct: 130 LPFWQANKARSLAPPFRDDAKYPEATEFNFRSLVGIGNF 168 >gi|292669250|ref|ZP_06602676.1| LysM domain protein [Selenomonas noxia ATCC 43541] gi|292649091|gb|EFF67063.1| LysM domain protein [Selenomonas noxia ATCC 43541] Length = 233 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +V+ ++E LI +G LD G +A++ Q H L G+ +T Sbjct: 56 KEGMRGGAVRHVQELLIQAGYLD--GGADGIAGPLTRAAIERCQADHMLVVDGICGEATY 113 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 ++ + L + R ++ YV +A Sbjct: 114 RVLSGGAEYDPVALGITDDRGSQVSRGSGRSIYVSATAYSAY 155 >gi|284042197|ref|YP_003392537.1| peptidoglycan-binding protein [Conexibacter woesei DSM 14684] gi|283946418|gb|ADB49162.1| Peptidoglycan-binding domain 1 protein [Conexibacter woesei DSM 14684] Length = 532 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 25/134 (18%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY---------QDILSRGGWPELPIR- 100 +++ + + + + + Y D S W + Sbjct: 341 QYNTVYETPIYPLGQAYDGTAATDLRRFRQLSEAYGARGVSWWVWDYASTSDWGAIGAGL 400 Query: 101 ------------PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 L + + V ++ L +G S + F + SAV+ +Q Sbjct: 401 TPIAAPESAGYPTLRVRSKGDLVVWAQQHLSGAG---QSVTVDGDFGSGTASAVRAYQAS 457 Query: 149 HGLDPSGMVDSSTL 162 GL +G++D+ T Sbjct: 458 KGLPETGVLDADTW 471 >gi|94709138|sp|Q4L6D0|CTPAL_STAHJ RecName: Full=Probable CtpA-like serine protease Length = 496 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS 127 I K T+ A YQ I +P + +G+++ V+ ++ L G Sbjct: 384 IHGKGIQPDTKIASPQYQSI------SVIPTDKSYSVGDNTKYVKSIKIGLDALGY--NV 435 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 S FD +ESA+K FQ H L +G D T Sbjct: 436 NNDSKQFDTQLESAIKKFQSEHELSVNGKFDKKT 469 >gi|70726487|ref|YP_253401.1| carboxy-terminal processing proteinase ctpA [Staphylococcus haemolyticus JCSC1435] gi|68447211|dbj|BAE04795.1| probable carboxy-terminal processing proteinase ctpA [Staphylococcus haemolyticus JCSC1435] Length = 490 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS 127 I K T+ A YQ I +P + +G+++ V+ ++ L G Sbjct: 378 IHGKGIQPDTKIASPQYQSI------SVIPTDKSYSVGDNTKYVKSIKIGLDALGY--NV 429 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 S FD +ESA+K FQ H L +G D T Sbjct: 430 NNDSKQFDTQLESAIKKFQSEHELSVNGKFDKKT 463 >gi|303241183|ref|ZP_07327691.1| Peptidoglycan-binding lysin domain protein [Acetivibrio cellulolyticus CD2] gi|302591310|gb|EFL61050.1| Peptidoglycan-binding lysin domain protein [Acetivibrio cellulolyticus CD2] Length = 791 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 17/163 (10%) Query: 109 VSVQRLRERL---IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP----SGMVDSST 161 V L++RL I+ DL + F +AV ++ +HGL G V +T Sbjct: 186 EEVLLLQKRLNELKITDDLGRALEEDGKFGENTLAAVNKYKKQHGLWNFGEYEGKVGQTT 245 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 E + + + + +N L +K + N L+ ++ V V Sbjct: 246 WEHLFKNMKVPYKGNGINSKNEAILKPEKPNSQ--DKNAENTLLKYIDQYTNFTIDGVTV 303 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 TP P I ++ + +P Sbjct: 304 KIPYYITPKGTE------LYGGKATPEKI--REFLRKNASNPS 338 >gi|282881413|ref|ZP_06290089.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281304711|gb|EFA96795.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 289 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS----VAFDAYVESAVKLFQMRHGL 151 + R L G V L L ++ S +DA + SAVK FQ GL Sbjct: 121 SIGDRTLKTGIHGSDVTSLTGYLATGLYINRSWIKEKEGYALYDATIASAVKHFQKDAGL 180 Query: 152 DPSGMVDSSTLEAMN 166 +G+ D +T+ + Sbjct: 181 PQTGVADQTTINKLK 195 Score = 44.6 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + V L L +G K + F + +AV+ FQ + L +G D Sbjct: 219 DKGTDVTELVNLLTKAGFAPDPKKIVMTSDGRTEFTKDIATAVRFFQAYNNLSVTGRADE 278 Query: 160 STLEAMNVPVD 170 +T++A+ Sbjct: 279 ATIKALIAKAQ 289 >gi|220916978|ref|YP_002492282.1| Peptidoglycan-binding domain 1 protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954832|gb|ACL65216.1| Peptidoglycan-binding domain 1 protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 136 Score = 49.6 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 9/83 (10%) Query: 91 RGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 RG P +P P L G LR+R G L D +A++ FQ Sbjct: 47 RGERPRVPSSPEALLAPGAVGEIQDALRDR----GYL--GAHRRGELDRATSAALRRFQE 100 Query: 148 RHGLDPSGMVDSSTLEAMNVPVD 170 GL +G D TL ++V Sbjct: 101 AQGLAATGAPDRETLRRLHVDPA 123 >gi|304392458|ref|ZP_07374399.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] gi|303295562|gb|EFL89921.1| ErfK/YbiS/YcfS/YnhG family protein [Ahrensia sp. R2A130] Length = 398 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 42/189 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + Q+ R + V+V+ A L V+ G +R + VGR + Sbjct: 233 AAIPVDQIDKRYYRQEVKYRSSHKPGTVVVDPHAKFLYVVQRGNTAMRYGIGVGRQGFE- 291 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P +I++ L + + Sbjct: 292 WSGEAHIGFKRVWPKWTPPVEMIERQ--PELAK--YCADCGGME---------------- 331 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + + ++ Y +H TP+ +SGC+R Sbjct: 332 -------------GGPANPLGARALYLVADGKDTLYRLHGTPKWNSIGT---AASSGCIR 375 Query: 346 V--RNIIDL 352 + +++IDL Sbjct: 376 LMNQDVIDL 384 >gi|326202028|ref|ZP_08191898.1| Peptidoglycan-binding domain 1 protein [Clostridium papyrosolvens DSM 2782] gi|325987823|gb|EGD48649.1| Peptidoglycan-binding domain 1 protein [Clostridium papyrosolvens DSM 2782] Length = 330 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL-----DPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P +G+ V+ ++ L+ +G G+ F ++AV +Q+ +GL Sbjct: 90 PNGCYGIGSRGEKVEDIQTALVNNGYSVGNSGPNYDGIDKTFGVDTKAAVVRYQIDNGLS 149 Query: 153 PSGMVDSSTLEAMNVPVD 170 G+V +T +++ V ++ Sbjct: 150 YDGIVGKNTAKSLGVNLE 167 >gi|262281175|ref|ZP_06058957.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257406|gb|EEY76142.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 167 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GCVR+RN II+L + +D + Sbjct: 119 IYIHGTPDTQPMGVPM---SHGCVRMRNEEIIELFDLVAEDALVYLSEE 164 >gi|196234288|ref|ZP_03133118.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] gi|196221642|gb|EDY16182.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] Length = 200 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S V ++RL G + + F A A+ FQ + L SG +D++T+ A+ Sbjct: 141 DSGSLVMSAQDRLNRLGY--SAGPVDGVFGAQTRDALADFQNDNNLPVSGALDTATVRAL 198 Query: 166 N 166 Sbjct: 199 G 199 >gi|114776543|ref|ZP_01451588.1| hypothetical protein SPV1_02447 [Mariprofundus ferrooxydans PV-1] gi|114553373|gb|EAU55771.1| hypothetical protein SPV1_02447 [Mariprofundus ferrooxydans PV-1] Length = 118 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + L+E L G P + F + A+K Q +HGL PSG VD + + Sbjct: 1 MRGKRIALLQEILYRKGY--PMQDQKGVFGVHTRDAIKDIQKQHGLKPSGQVDDELFQLI 58 Query: 166 NV 167 Sbjct: 59 QQ 60 >gi|330883919|gb|EGH18068.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 103 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 190 KMGLRYVLV-NIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G R +V N+ + G+ V + VGR +PI +++ NP W P Sbjct: 19 PPGPREGIVLNLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPP 78 Query: 248 RSIIQKDM 255 SI + + Sbjct: 79 ASIKAEHV 86 >gi|308233678|ref|ZP_07664415.1| Peptidoglycan-binding domain 1 protein [Atopobium vaginae DSM 15829] Length = 306 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 89 LSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + + W EL +G+ V++L+ L I G + + Sbjct: 60 VDKQMWSELVDASYTMGDRTLYLRLPNFHGNDVKQLQTCLNILGF--SCGEADGYYGVHT 117 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 E+AVK FQ G GM T +A+ Sbjct: 118 EAAVKEFQESQGSLGDGMAFQDTFDAIER 146 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 P+ G++ +V+ ++ RL +D S+ F A AV F++ H L S VD Sbjct: 3 PIREGSTGAAVEDIQSRLTRLDYAIDSSEIKQQHFGASTARAVGKFRLDHNLSLSSDVDK 62 Query: 160 STLEAM 165 + Sbjct: 63 QMWSEL 68 >gi|328943610|ref|ZP_08241075.1| penicillin-resistant DD-carboxypeptidase [Atopobium vaginae DSM 15829] gi|327491579|gb|EGF23353.1| penicillin-resistant DD-carboxypeptidase [Atopobium vaginae DSM 15829] Length = 312 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 89 LSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + + W EL +G+ V++L+ L I G + + Sbjct: 66 VDKQMWSELVDASYTMGDRTLYLRLPNFHGNDVKQLQTCLNILGF--SCGEADGYYGVHT 123 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 E+AVK FQ G GM T +A+ Sbjct: 124 EAAVKEFQESQGSLGDGMAFQDTFDAIER 152 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 P+ G++ +V+ ++ RL +D S+ F A AV F++ H L S VD Sbjct: 9 PIREGSTGAAVEDIQSRLTRLDYAIDSSEIKQQHFGASTARAVGKFRLDHNLSLSSDVDK 68 Query: 160 STLEAM 165 + Sbjct: 69 QMWSEL 74 >gi|84498128|ref|ZP_00996925.1| hypothetical protein JNB_18613 [Janibacter sp. HTCC2649] gi|84381628|gb|EAP97511.1| hypothetical protein JNB_18613 [Janibacter sp. HTCC2649] Length = 611 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ +V L++ L I+ +F E+ VK +Q G+ P+G+V Sbjct: 393 AKSVIQRGSKGPAVIALQKALRIT--------ADGSFGPGTETKVKAYQTSKGISPTGVV 444 Query: 158 DSSTLEAM 165 S+T A+ Sbjct: 445 ASATWAAL 452 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 22/156 (14%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 Y +L G S + I L + + +F +R + + + Sbjct: 231 YPLLKRGDSHKDLLIAQGALGLSKDGQFGPGTEAAVASFQSRNGVAVTKQLD-------N 283 Query: 77 QTEKAIAFYQDILSRGGWPELPI-------RPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 T + + I SR G P + G+ +V L++ L ++ Sbjct: 284 ATWTKLVQLKLIPSRTGGTTAPSPLSAYVNTVIQRGSKGPAVIALQKALGLT-------- 335 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +F E+ VK +Q G+ P+G+V SST +A+ Sbjct: 336 ADGSFGPGTETKVKAYQSSKGISPTGVVASSTWKAL 371 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ L+ L + AF AVK Q R GL SG+V+ T Sbjct: 481 LSAGSKGTAVKVLQAGL-------GGLAVDGAFGQATVGAVKALQTRWGLPASGVVNLKT 533 Query: 162 LEAMNVPVDLRI 173 + + V I Sbjct: 534 WNRLELTVHPLI 545 >gi|255588477|ref|XP_002534615.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223524902|gb|EEF27766.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] Length = 325 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + L++ L G L + + FD ESA+ +Q GL +G +D+ T+ Sbjct: 28 GSEVTGMSELKKYLNRFGYLPGNVNFTDIFDLEFESAILAYQNNLGLPVTGKLDADTIST 87 Query: 165 MNVP 168 + P Sbjct: 88 IMSP 91 >gi|313637289|gb|EFS02789.1| carboxy- processing protease [Listeria seeligeri FSL S4-171] Length = 468 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 380 SSKVYQEGDFGDDVKTIETLLKALDY--NVGKVDGLYDVDTKYAVERFQAANKLDVTGIM 437 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 438 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 468 >gi|313632728|gb|EFR99698.1| carboxy- processing protease [Listeria seeligeri FSL N1-067] Length = 512 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 424 SSKVYQEGDFGDDVKTIETLLKALDY--NVGKVDGLYDVDTKYAVERFQAANKLDVTGIM 481 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 482 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 512 >gi|289435194|ref|YP_003465066.1| carboxypeptidase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171438|emb|CBH27982.1| carboxypeptidase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 497 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 409 SSKVYQEGDFGDDVKTIETLLKALDY--NVGKVDGLYDVDTKYAVERFQAANKLDVTGIM 466 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 467 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 497 >gi|126724612|ref|ZP_01740455.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacterales bacterium HTCC2150] gi|126705776|gb|EBA04866.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacterales bacterium HTCC2150] Length = 201 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 42/149 (28%), Gaps = 45/149 (30%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E+ + V D T + I R + P W S+ +++P++ Sbjct: 86 EDESIYKLYPTSVPLTDELTRRGRTSIIRKVVGPSWAPTPSMR--------KRNPEW--- 134 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 PG N + + + + +H T + Sbjct: 135 ----------------------------PEFIGPGPDNPLGTHAMYLSWKY-YRIHGTQD 165 Query: 329 PILFNNVVRFETSGCVRV--RNIIDLDVW 355 R ++GC+ + +I +L Sbjct: 166 TRKIG---RKSSNGCIGLFNEHIEELFAL 191 >gi|108757350|ref|YP_633830.1| ErfK/YbiS/YcfS/YnhG family protein [Myxococcus xanthus DK 1622] gi|108461230|gb|ABF86415.1| ErfK/YbiS/YcfS/YnhG family protein [Myxococcus xanthus DK 1622] Length = 330 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 78/259 (30%), Gaps = 65/259 (25%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-----LDP 153 + L G+ ++ ++ L+ G G + A++ FQ+ + P Sbjct: 94 AQILGPGSQGEGLRAVQATLLDMGFALH-GGADGHHGPHTTRALRNFQVHASRTFPAVLP 152 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +G +D+STL A++ L G R +P+A + +V Sbjct: 153 TGALDASTLRALDA-------------------LAPAPGTRGQTRGLPSA---FFDGQQV 190 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V+V + +T + +R + D+ I + Sbjct: 191 ----RVVVALREHRTFLFDTRGQLV---------------DIFPNATGAAASPTRTGIKV 231 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY----MHDTPEP 329 + ++D + E + ++ + + +H T P Sbjct: 232 V--------RTKLDQLATEAAGARLW---NDRHVFGVRMLDLSWADGRHSGEELHGTNAP 280 Query: 330 ILFNNVVRFETSGCVRVRN 348 L + GC+R N Sbjct: 281 ALLGTD---VSHGCIRHSN 296 >gi|332711167|ref|ZP_08431100.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349981|gb|EGJ29588.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 126 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---------L 151 L G + +V+ L++ L +D + F + E AV+ FQ + L Sbjct: 32 VLKKGTAGEAVRFLQQLLNC--YMDYYLVIDGQFGSQTEQAVRDFQSDYNYQGKSNPDYL 89 Query: 152 DPSGMVDSSTLEAMN 166 G+V T A+ Sbjct: 90 IVDGIVGKETYRAIG 104 >gi|284047500|ref|YP_003397839.1| NLP/P60 protein [Acidaminococcus fermentans DSM 20731] gi|283951721|gb|ADB46524.1| NLP/P60 protein [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 10/124 (8%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G+ V+ ++ +L G P G + +E V+ FQ H L +G VD Sbjct: 28 TAPLKVGDKGWKVKTVQIKLNAIGMKTPQTG---KYTRELEGQVRNFQKEHRLPATGKVD 84 Query: 159 SSTLEAMNVPVDL-------RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 +T + R + R K + G + Sbjct: 85 DTTYFRIQEAAFEKEGIHGIRGEDVVRTASRYKGVPYSFGGTTPRAFDCSGYVQYVFRQH 144 Query: 212 KVGL 215 + L Sbjct: 145 RAQL 148 >gi|323706377|ref|ZP_08117941.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534271|gb|EGB24058.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 418 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V L+ L G + + F + V FQ L G+V +T A Sbjct: 42 GTYGTDVSELQSILNSIGF--STGAIDGVFGNNTLNGVLAFQKAENLVADGIVGPNTYNA 99 Query: 165 MN 166 + Sbjct: 100 IQ 101 >gi|221638283|ref|YP_002524545.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides KD131] gi|221159064|gb|ACM00044.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides KD131] Length = 262 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 44/189 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + L + +R + ++V+ A L V+ G+ LR + VGR R Sbjct: 58 PAVPPQYLSADKVRREVDYFTDRPPGTIVVDPYARYLYLVQPGQRALRYAIAVGREGR-G 116 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W+ +S+I + E+ Sbjct: 117 FSGEAVIPIKREWPRWIPTKSMIAE----------------------------DPEQYGP 148 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 D G N + + + + ++ Y +H T + ++GC+R Sbjct: 149 WKDG-------MDGGLSNPLGARALYLHRDGKDTYYRIHGTNDVSSIGK---ATSAGCIR 198 Query: 346 V--RNIIDL 352 + ++I+DL Sbjct: 199 LWNQDILDL 207 >gi|126734437|ref|ZP_01750184.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. CCS2] gi|126717303|gb|EBA14167.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. CCS2] Length = 193 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 55/194 (28%), Gaps = 46/194 (23%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIV 221 + + +++ + + + VLV+I + +L E+ V V Sbjct: 31 EVEADISASVQRNVASFRSLDWQPYFSNLNKGAVLVDIQSRALHFWSEDQAVYKLFPTSV 90 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 + T + I R + P W S+ ++P++ Sbjct: 91 PLSEELTRKGRTAITRKVEGPSWAPTPSMKI--------RNPEW---------------- 126 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 PG N + + + + +H T + R ++ Sbjct: 127 ---------------PDFIGPGPDNPLGTHALHLSWQY-YRIHGTHDTRKIG---RRSSN 167 Query: 342 GCVRVRNIIDLDVW 355 GC+ + N + Sbjct: 168 GCIGLYN-EQIAEL 180 >gi|77465087|ref|YP_354590.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides 2.4.1] gi|126464539|ref|YP_001045652.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] gi|332560684|ref|ZP_08415002.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides WS8N] gi|77389505|gb|ABA80689.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides 2.4.1] gi|126106350|gb|ABN78880.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] gi|332274482|gb|EGJ19798.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides WS8N] Length = 183 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 44/168 (26%), Gaps = 46/168 (27%) Query: 189 QKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +G ++ + + +L +G+ V + T ++ I R P W Sbjct: 48 DSLGKGAIVADTTSRALHFWSGDGRDYRIYPTSVPISEELTKRGYTEIVRKKVGPSWTPT 107 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 S +++ DW PG N Sbjct: 108 PSQMERYP-------------------------------DWKPVG---------PGPENP 127 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + + + +H T + R + GC+ + N + Sbjct: 128 LGTHAMYLGWPAYI-IHGTHDTRKIG---RPSSDGCIGLYN-EKIAEL 170 >gi|261366638|ref|ZP_05979521.1| penicillin-resistant DD-carboxypeptidase [Subdoligranulum variabile DSM 15176] gi|282571457|gb|EFB76992.1| penicillin-resistant DD-carboxypeptidase [Subdoligranulum variabile DSM 15176] Length = 229 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G+P + G+ + V L++ L G PS L F + ESA+K Q L Sbjct: 148 GYPTV-----RRGSRNTYVLILQDALNALGY--PSGSLDGVFGSATESALKAIQKDFSLT 200 Query: 153 PSGMVDSSTLEAMN 166 G+ ++ + + Sbjct: 201 ADGVCGCNSWKKIA 214 >gi|160944034|ref|ZP_02091264.1| hypothetical protein FAEPRAM212_01535 [Faecalibacterium prausnitzii M21/2] gi|158444710|gb|EDP21714.1| hypothetical protein FAEPRAM212_01535 [Faecalibacterium prausnitzii M21/2] Length = 227 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 9/76 (11%) Query: 93 GWPE--LPIRPLHLGNSS--VS---VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 GW L L G + + L+ L + F +AVK+F Sbjct: 146 GWGADLLGSTLLKEGGPHTFPACVWISTLQAHLQSLAY--DTGTADGIFGPKTTAAVKMF 203 Query: 146 QMRHGLDPSGMVDSST 161 Q GLD G V T Sbjct: 204 QKYMGLDADGKVGPKT 219 >gi|222147894|ref|YP_002548851.1| hypothetical protein Avi_1186 [Agrobacterium vitis S4] gi|221734882|gb|ACM35845.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 254 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 52/182 (28%), Gaps = 40/182 (21%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + + ++ +R + ++V+ A L VE +R V +G+ Sbjct: 91 AIPLDRVDKRFLRQEVDYPTTERPGTIVVDTKAHYLYLVEANGRAMRYGVGLGKQGFA-W 149 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + P W S + +RQ + Sbjct: 150 QGRGVLQFKKTWPRWT--PSDDMVERQPDMRQ--FAAAQGGLE----------------- 188 Query: 290 SPEPPNFIFRQDPGKINAMASTKIE-FYSRNN--TYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + + + F + + +H TP+ +SGCVR+ Sbjct: 189 ------------PGLRNPLGARALYIFQNGRDTLYRIHGTPDWQSVGK---AVSSGCVRM 233 Query: 347 RN 348 N Sbjct: 234 FN 235 >gi|325001255|ref|ZP_08122367.1| hypothetical protein PseP1_20947 [Pseudonocardia sp. P1] Length = 332 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 10/106 (9%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 +P + E + ++ + ++ WP L G+S V+ + L +G L Sbjct: 182 LPRLRNEVAGLLGRRLSRTE--ATKATWPL-----LREGDSGPLVEAAQLLLRDAGTL-- 232 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSSTLEAMNVPVDL 171 +D AV FQ+ H + +G++ + + V Sbjct: 233 RGDPDGRYDDRTLGAVTEFQVLHRAEDANGLLGGESWPELARTVRA 278 >gi|299768887|ref|YP_003730913.1| hypothetical protein AOLE_03195 [Acinetobacter sp. DR1] gi|298698975|gb|ADI89540.1| hypothetical protein AOLE_03195 [Acinetobacter sp. DR1] Length = 167 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GCVR+RN II+L + +D + Sbjct: 119 IYIHGTPDTQPMGVPM---SHGCVRMRNEEIIELFDLVAEDALVYLSEQ 164 >gi|153009383|ref|YP_001370598.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151561271|gb|ABS14769.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 230 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 9/112 (8%) Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINA 307 + ++ +A+ +Q ++ I+ E + + E ++ + F D G N Sbjct: 111 TTARRYGIAVGKQGLEFKGTGTINAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNP 170 Query: 308 MASTKIEF--YSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 + S + +++ +H T +P + ++GC R+ +++DL Sbjct: 171 LGSRALYLFQGNKDTYIRIHGTVQPWTIGSS---ASNGCFRMINEDVMDLYE 219 >gi|256395379|ref|YP_003116943.1| NLP/P60 protein [Catenulispora acidiphila DSM 44928] gi|256361605|gb|ACU75102.1| NLP/P60 protein [Catenulispora acidiphila DSM 44928] Length = 285 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V L++ L G + F +AVK +Q H L G+V T + Sbjct: 53 GQKSGCVTELQQLLNKHG---AHLAVDGDFGPATRAAVKSYQSSHKLSVDGIVGPKTKAS 109 Query: 165 MN 166 ++ Sbjct: 110 LD 111 >gi|302875048|ref|YP_003843681.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307690333|ref|ZP_07632779.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302577905|gb|ADL51917.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 449 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 5/113 (4%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLS 131 T+ + + ++ G P L +G+S V+ ++ R+ ++ P ++ Sbjct: 312 YYGTDINLVRAEKVV--GIPQSFPGYALRIGSSGQPVRTVQTFLNRIAVNFPAIPKLAVT 369 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 +DA ++VK FQ L SG+VD +T A++ + ++ ++ Sbjct: 370 GVYDAKTATSVKKFQEVFKLSQSGIVDYATWFAISRLYVAVTKIAELREEDLR 422 >gi|126461297|ref|YP_001042411.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] gi|126102961|gb|ABN75639.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] Length = 260 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 44/189 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + L + +R + ++V+ A L V+ G+ LR + VGR R Sbjct: 56 PAVPPQYLSADKVRREVDYFTDQPPGTIVVDPYARYLYLVQPGQRALRYAIAVGREGR-G 114 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W+ +S+I + E+ Sbjct: 115 FSGEAVIPIKREWPRWIPTKSMIAE----------------------------DPEQYGP 146 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 D G N + + + + ++ Y +H T + ++GC+R Sbjct: 147 WKDG-------MDGGLSNPLGARALYLHRDGKDTYYRIHGTNDVSSIGK---ATSAGCIR 196 Query: 346 V--RNIIDL 352 + ++I+DL Sbjct: 197 LWNQDILDL 205 >gi|291525690|emb|CBK91277.1| Putative peptidoglycan-binding domain-containing protein [Eubacterium rectale DSM 17629] Length = 420 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + +G+S +V +++++L I PS + ++AV+ FQ GL S Sbjct: 336 PGYNIGIGSSGQNVYQIQKQLARIAKAYPAIPSIVPDGIYGPKTKAAVEKFQAVFGLPVS 395 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 396 GVVDYNTWYEIS 407 >gi|197122202|ref|YP_002134153.1| peptidoglycan-binding protein [Anaeromyxobacter sp. K] gi|196172051|gb|ACG73024.1| Peptidoglycan-binding domain 1 protein [Anaeromyxobacter sp. K] Length = 136 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 9/83 (10%) Query: 91 RGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 RG P +P P L G LR+R G L D +A++ FQ Sbjct: 47 RGERPRVPSSPEALLAPGAVGEIQDALRDR----GYL--GAHRRGELDRATSAALRRFQE 100 Query: 148 RHGLDPSGMVDSSTLEAMNVPVD 170 GL +G D TL ++V Sbjct: 101 AQGLAATGAPDRETLRRLHVDPA 123 >gi|194014667|ref|ZP_03053284.1| N-acetylmuramoyl-L-alanine amidase XlyA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] gi|194013693|gb|EDW23258.1| N-acetylmuramoyl-L-alanine amidase XlyA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] Length = 299 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 9/90 (10%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKG 129 Q + + Y++ ELP L V+ +++ L +KG Sbjct: 200 QIGQVLKIYRNDAKSLY--ELPNGVLKVTSPLTKGEHVRLVQQALAAVYFYPDKAAANKG 257 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + +AV FQ+ +GL G+ Sbjct: 258 IDGVYGEKTANAVARFQLVNGLTSDGVYGP 287 >gi|297539081|ref|YP_003674850.1| ErfK/YbiS/YcfS/YnhG family protein [Methylotenera sp. 301] gi|297258428|gb|ADI30273.1| ErfK/YbiS/YcfS/YnhG family protein [Methylotenera sp. 301] Length = 159 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 8/54 (14%) Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 N + + + Y+H TP+ + GCVR+ N +L W+ Sbjct: 102 KNRLGNVDTM---QRYIYIHGTPDSTELGK---IGSHGCVRMHNAEVIELFDWI 149 >gi|224824537|ref|ZP_03697644.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] gi|224603030|gb|EEG09206.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] Length = 163 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 9/68 (13%) Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKD 359 PG N + R Y+H TP+ + R + GCVR+RN +L L Sbjct: 100 PG-RNRLGPVDTM---RRYIYLHGTPDQVELG---RPGSHGCVRMRNSDIIELFELLPCG 152 Query: 360 TPTWSRYH 367 T H Sbjct: 153 TEVEIVEH 160 >gi|53804647|ref|YP_113750.1| N-acetylmuramoyl-L-alanine amidase domain/peptidoglycan binding domain-containing protein [Methylococcus capsulatus str. Bath] gi|53758408|gb|AAU92699.1| N-acetylmuramoyl-L-alanine amidase domain/peptidoglycan binding domain protein [Methylococcus capsulatus str. Bath] Length = 617 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLS---VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + +V +++ L G + LS F + +AV+ FQ GL SG VD +TL Sbjct: 291 TGDAVGAIQDLLSGHGHIGLPCLLSAAYGRFGSKTAAAVQDFQTGQGLSASGEVDVATLR 350 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLL 187 A+ + R QV L + L Sbjct: 351 ALVRTPAAKPRISQVYLELVLGLP 374 >gi|296448110|ref|ZP_06890011.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296254375|gb|EFH01501.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 249 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 294 PNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 P+ D G N + + + +++ + +H T EP + +SGC+R+ N Sbjct: 176 PDLPPHMDGGLENPLGARALYLFQGNKDTLFRIHGTNEPQSIGH---AVSSGCIRMLNAD 232 Query: 351 DL 352 + Sbjct: 233 VI 234 >gi|257057487|ref|YP_003135319.1| negative regulator of beta-lactamase expression [Saccharomonospora viridis DSM 43017] gi|256587359|gb|ACU98492.1| negative regulator of beta-lactamase expression [Saccharomonospora viridis DSM 43017] Length = 311 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 3/52 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 L G+ S V + RL G FD AV F +GL Sbjct: 237 LRPGDRSEDVLLAQRRLRAHGY---DVPAHGVFDQATREAVAAFAASNGLAQ 285 >gi|291528185|emb|CBK93771.1| Putative peptidoglycan-binding domain-containing protein [Eubacterium rectale M104/1] Length = 420 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + +G+S +V +++++L I PS + ++AV+ FQ GL S Sbjct: 336 PGYNIGIGSSGQNVYQIQKQLARIAKAYPAIPSIVPDGIYGPKTKAAVEKFQAVFGLPVS 395 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 396 GVVDYNTWYEIS 407 >gi|239997099|ref|ZP_04717623.1| hypothetical protein AmacA2_21857 [Alteromonas macleodii ATCC 27126] Length = 39 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 V VY +A++ + I FR D Y D+ + + Sbjct: 1 VLIVYFTAFADEAGTIVFRRDAYNRDSYIIEKL 33 >gi|221369085|ref|YP_002520181.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides KD131] gi|221162137|gb|ACM03108.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides KD131] Length = 183 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 44/168 (26%), Gaps = 46/168 (27%) Query: 189 QKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +G ++ + + +L +G+ V + T ++ I R P W Sbjct: 48 DSLGKGAIVADTTSRALHFWSGDGRDYRIYPTSVPISEELTKRGYTEIVRKKVGPSWTPT 107 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 S +++ DW PG N Sbjct: 108 PSQMERYP-------------------------------DWKPIG---------PGPENP 127 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + + + +H T + R + GC+ + N + Sbjct: 128 LGTHAMYLGWPAYI-IHGTHDTRKIG---RPSSDGCIGLYN-EKIAEL 170 >gi|320104360|ref|YP_004179951.1| hypothetical protein Isop_2836 [Isosphaera pallida ATCC 43644] gi|319751642|gb|ADV63402.1| protein of unknown function DUF1028 [Isosphaera pallida ATCC 43644] Length = 391 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 48/175 (27%), Gaps = 41/175 (23%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP 98 ++ + + + +V E I + + Y I G+ Sbjct: 216 LVADPRRTHPDGSHLTVNLQVAE---------HPEPIDELRR---QYDTITHNLGYRTFA 263 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPS-----------KGLSVAFDAYVESAVKLFQM 147 + V +L+ L GD P +D AV F+ Sbjct: 264 LI------QGPDVVQLKRALHELGDYRPDEQEADFNRGLRSSEGGVYDRETAQAVDRFRA 317 Query: 148 RHGLD--------PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 R GL G+VD + A+ I QL+ K ++ R Sbjct: 318 RVGLPHPGLGLGYAPGVVDREMIRAL----QDAITQLRRAQRAQKSDSPEQPPPR 368 >gi|298527700|ref|ZP_07015104.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511352|gb|EFI35254.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] Length = 507 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 3/79 (3%) Query: 94 W-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W PE+ ++ + S +Q+++ERL G + A+ FQ + L+ Sbjct: 431 WRPEVIVQEFYPDLRSQEIQKIQERLSDLGYY--RNITDGYLGSATWHALMDFQAAYDLE 488 Query: 153 PSGMVDSSTLEAMNVPVDL 171 SG T+ + D Sbjct: 489 TSGTPTPETIFWLFSGADP 507 >gi|209523573|ref|ZP_03272127.1| glycoside hydrolase family 25 [Arthrospira maxima CS-328] gi|209495978|gb|EDZ96279.1| glycoside hydrolase family 25 [Arthrospira maxima CS-328] Length = 448 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVD 158 + G V+ ++ L G + F A E AV FQ G+ +G+ Sbjct: 189 ESIRRGERGPKVELMQTMLKKRGF--EPGVIDGIFGAGTERAVISFQDNKGIKEKNGVAG 246 Query: 159 SSTLEAMNVPVD 170 T A+ V+ Sbjct: 247 LKTWTALMGQVE 258 >gi|170751155|ref|YP_001757415.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170657677|gb|ACB26732.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 267 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 51/200 (25%), Gaps = 49/200 (24%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLM-------RIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 S L R ++ R + + V+V+ L V Sbjct: 58 PSFLAMYAAKPAERFPLPATDISAVDPRYFRQEVAYPRSEPPGTVVVDPGNKFLYLVREN 117 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 LR V VG+ + I R P W +I+++ Sbjct: 118 GRALRYGVGVGKAG-LAWNGTAEIKRKAEWPRWTPTADMIRREP---------------- 160 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPE 328 + PG N + + + + +H T E Sbjct: 161 -------------------ERNGPWRNGMAPGLTNPLGPRALYLFDGDRDTLYRIHGTTE 201 Query: 329 PILFNNVVRFETSGCVRVRN 348 P +SGC+R+ N Sbjct: 202 PQTIGTN---VSSGCIRMFN 218 >gi|170740929|ref|YP_001769584.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168195203|gb|ACA17150.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 219 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 47/179 (26%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R ++V+I L V++G +R V VG++ + Sbjct: 65 YRRQVVAYAGPEKPGTIVVDIDERLLYLVQDGGEAIRYGVGVGKLG-----FSWKGT--- 116 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 +I +K + P+ Sbjct: 117 --------ATIGRKGVWP------------------------DWGPTRTMVGLNPDLPRS 144 Query: 300 QDPGKINAMASTKIEFY-SRNNTY--MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + G N + + + Y + +H T EP + +SGCVR+ N D+ Sbjct: 145 RKGGLDNPLGARALYLYQGGRDILFRIHGTNEPWSIGEQM---SSGCVRMLN-EDIVDL 199 >gi|66808293|ref|XP_637869.1| hypothetical protein DDB_G0286137 [Dictyostelium discoideum AX4] gi|60466300|gb|EAL64361.1| hypothetical protein DDB_G0286137 [Dictyostelium discoideum AX4] Length = 1009 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + +V L L G LD + + ESA++ FQ + + +G+ D S Sbjct: 430 LKSSTTGDAVSLLNYSLYSIGYLDEYNHSTREIYTSITESAIRKFQEDNNIPMTGVADFS 489 Query: 161 TLE 163 T+ Sbjct: 490 TIR 492 >gi|77462420|ref|YP_351924.1| hypothetical protein RSP_1873 [Rhodobacter sphaeroides 2.4.1] gi|77386838|gb|ABA78023.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 293 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 44/189 (23%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + L + +R + ++V+ A L V+ G+ LR + VGR R Sbjct: 89 PAVPPQYLSADKVRREVDYFTDQPPGTIVVDPYARYLYLVQPGQRALRYAIAVGREGR-G 147 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W+ +S+I + E+ Sbjct: 148 FSGEAVIPIKREWPRWIPTKSMIAE----------------------------DPEQYGP 179 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 D G N + + + + ++ Y +H T + ++GC+R Sbjct: 180 WKDG-------MDGGLSNPLGARALYLHRDGKDTYYRIHGTNDVSSIGK---ATSAGCIR 229 Query: 346 V--RNIIDL 352 + ++I+DL Sbjct: 230 LWNQDILDL 238 >gi|28210382|ref|NP_781326.1| hypothetical protein CTC00656 [Clostridium tetani E88] gi|28202819|gb|AAO35263.1| conserved protein (peptidoglycan binding) [Clostridium tetani E88] Length = 232 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 12/84 (14%) Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN-TYMHDTPEPILFNN 334 GK + + + + + +H T +P+ NN Sbjct: 68 AGGKPETPSPYGTWKITSKSANW------GSGFGTRWMGLNVPWGQYGIHGTNKPLSINN 121 Query: 335 VVRFETSGCVRVRN--IIDLDVWL 356 + GC+R+ N + +L ++ Sbjct: 122 PD---SKGCIRMFNKDVEELYKYV 142 Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V ++ L G L + ++S + F+ + L S +D Sbjct: 163 RTLKPGDKGADVLEVQRVLKYRGYYA--GKLDGIYGEGMKSIILKFKTDNNLSFSHYIDG 220 Query: 160 STLEAMNVPV 169 + + Sbjct: 221 EMYNKLGMQP 230 >gi|119385308|ref|YP_916364.1| ErfK/YbiS/YcfS/YnhG family protein [Paracoccus denitrificans PD1222] gi|119375075|gb|ABL70668.1| ErfK/YbiS/YcfS/YnhG family protein [Paracoccus denitrificans PD1222] Length = 217 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 49/204 (24%) Query: 150 GLDPSGMVDSSTLEAMNVPVDL----RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 G G +T +A V D R + + + +LV++ + +L Sbjct: 39 GQPLQGTAGGATPDAGMVQYDSGQDSRRNISSFRMQDWQPYF-GTLANGAILVDLTSRAL 97 Query: 206 EAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 E+ V V T + I + + P W + +++P+ Sbjct: 98 HFWSEDQSVYRLFPTSVPVSADLTRTGRTEIIKKVVGPSWAPTPEMK--------KRNPE 149 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + PG N + + + + +H Sbjct: 150 W-------------------------------PDFVPPGPDNPLGTHALWLSWQY-YRIH 177 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T + R ++GC+ + N Sbjct: 178 GTHDTRKIG---RKSSNGCIGLYN 198 >gi|255263797|ref|ZP_05343139.1| ErfK/YbiS/YcfS/YnhG family protein [Thalassiobium sp. R2A62] gi|255106132|gb|EET48806.1| ErfK/YbiS/YcfS/YnhG family protein [Thalassiobium sp. R2A62] Length = 189 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 16/109 (14%) Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ-----DPGKINAMASTKIEFYS 317 P + + KE + + ++Q G N + + + + Sbjct: 78 PGLYESGEFTV--GAKKEWPSWTPTPDMIKRNPAAYKQHENGMPGGPNNPLGARALYLFQ 135 Query: 318 RNN----TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 +H T P ++GC R+ N DL + T Sbjct: 136 PGRGDTFLRIHGTNAPRTIGT---AVSNGCARLTNAHIGDLYERVPLGT 181 >gi|154245021|ref|YP_001415979.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] gi|154159106|gb|ABS66322.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] Length = 225 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 8/66 (12%) Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G+ N + + + ++ Y +H T EP +SGC+R+ +++IDL Sbjct: 157 AGGETNPLGARALYLFKDGKDTLYRIHGTNEPWTIGE---AVSSGCIRMMNQDVIDLYRR 213 Query: 356 LLKDTP 361 + T Sbjct: 214 VPNGTK 219 >gi|291005214|ref|ZP_06563187.1| hypothetical protein SeryN2_11892 [Saccharopolyspora erythraea NRRL 2338] Length = 131 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 6/82 (7%) Query: 87 DILSRGGWPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I+ W LP L G++ V L+ L + F ++ V Sbjct: 31 GIVGPLSWQALPSGSAMPVLQEGSTGGVVWDLQRTLNTL--IVAGLVQDGIFGPLTKAKV 88 Query: 143 KLFQMRHGLDPSGMVDSSTLEA 164 FQ + P G+V T A Sbjct: 89 VQFQQISSIAPDGIVGDRTWRA 110 >gi|238923688|ref|YP_002937204.1| hypothetical protein EUBREC_1310 [Eubacterium rectale ATCC 33656] gi|238875363|gb|ACR75070.1| Hypothetical protein EUBREC_1310 [Eubacterium rectale ATCC 33656] Length = 128 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + +G+S +V +++++L I PS + ++AV+ FQ GL S Sbjct: 44 PGYNIGIGSSGQNVYQIQKQLARIAKAYPAIPSIVPDGIYGPKTKAAVEKFQAVFGLPVS 103 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 104 GVVDYNTWYEIS 115 >gi|154252852|ref|YP_001413676.1| N-acetylmuramoyl-L-alanine amidase [Parvibaculum lavamentivorans DS-1] gi|154156802|gb|ABS64019.1| N-acetylmuramoyl-L-alanine amidase family 2 [Parvibaculum lavamentivorans DS-1] Length = 247 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 20/133 (15%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP------- 98 + A + + I S PI ++ +A ++ A A D W L Sbjct: 105 PYPEAQMKAVEA-LSLEILSRHPIQARRVLAHSDIAPARKADPGEWFDWARLARAGVGVW 163 Query: 99 --------IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 L G+ +V L+ L G + +D ++ V FQ Sbjct: 164 VEPEPVGEGPVLREGDRGDTVAELQYLLADYGY---GLEVLGRYDEATKAVVTAFQRHFR 220 Query: 151 -LDPSGMVDSSTL 162 G+ D ST+ Sbjct: 221 PQKVDGVADVSTV 233 >gi|83942058|ref|ZP_00954520.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. EE-36] gi|83847878|gb|EAP85753.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. EE-36] Length = 201 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/209 (11%), Positives = 57/209 (27%), Gaps = 48/209 (22%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGKVG 214 V+S + +R+ + + +LV+I + ++ E+ + Sbjct: 32 VNSEATTETERDLTETVRRNTSSFRTLDWQPYFSDTKNGAILVDIDSRAVHYWSEDQSIY 91 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 V + T + + + + P W S+ L ++P++ Sbjct: 92 KLYPSSVPLTEELTRRGRTSVIQKVVGPTWRPTPSM--------LERNPEW--------- 134 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFN 333 PG N + + + Y +H T + Sbjct: 135 ----------------------PAVIGPGPDNPLGTHALYLS--WTYYRIHGTHDTRKIG 170 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 R ++GC+ + N + Sbjct: 171 ---RRSSNGCIGLYN-EHIAELFAMANVG 195 >gi|297159984|gb|ADI09696.1| Peptidoglycan-binding domain 1 protein [Streptomyces bingchenggensis BCW-1] Length = 379 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 15/151 (9%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + Y+++ + P RPL + V++ L + G ++ + A Sbjct: 112 LPMYRELAAGRD----PDRPLR----GLDVKQFESNLAMLGY--SGFTVNDTYSQLTADA 161 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK +Q G +G V + + ++ P+ + ++V +L R V V+ P Sbjct: 162 VKRWQRDLGRPRTGKVGTGDIAYVSGPIRIARTSVRVGAQATGNVLSYTSTARSVTVDAP 221 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 A E G V V D T Sbjct: 222 AGETGWAERGN-----RVTVELPDGHTVKGR 247 >gi|86148794|ref|ZP_01067062.1| putative general secretion pathway protein A [Vibrio sp. MED222] gi|85833413|gb|EAQ51603.1| putative general secretion pathway protein A [Vibrio sp. MED222] Length = 562 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + L G +V L ++S L S FD ++ ++ FQ G+ Sbjct: 474 WKQPLRETLKEGYQGEAVALLDL--LLSEVLGEDVSGSDVFDYELKMKIEAFQTWQGMSV 531 Query: 154 SGMVDSSTLEAMNVPVDLRIRQL 176 G+ TL + R+ QL Sbjct: 532 DGIAGKRTLARL-----QRLAQL 549 >gi|300727563|ref|ZP_07060953.1| putative peptidoglycan binding domain protein [Prevotella bryantii B14] gi|299775152|gb|EFI71754.1| putative peptidoglycan binding domain protein [Prevotella bryantii B14] Length = 274 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 16/81 (19%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS----------VAFDAYVESAVKLF 145 + R L G V L +G L ++ +DA + SAVK F Sbjct: 132 SIGDRTLKTGIHGSDVTAL------TGYLATGLYINHSWIKEKEGYSLYDATIASAVKHF 185 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q GL +G+ D +T++ + Sbjct: 186 QKDAGLAQTGIADQTTIDKLK 206 >gi|228943445|ref|ZP_04105889.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976300|ref|ZP_04136771.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783404|gb|EEM31512.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816225|gb|EEM62406.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 595 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGL 151 P + G+ SV+ +++ L + +S FD+ +AVK+FQ + Sbjct: 372 KSFPGYNIKEGDQKGSVRTIQKYLFQIRKKYSNLPEIIISGTFDSNTVNAVKIFQRNFQI 431 Query: 152 DPSGMVDSSTLEAMN 166 +G+VD T +N Sbjct: 432 PDNGIVDELTWNKLN 446 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV+ ++ L G + F E +VK FQ +G+V Sbjct: 462 LQNGSQGESVKMIQSLLKRFGFYTGE--IDGFFGLGTEKSVKEFQKIKSFTVTGVVRKEL 519 Query: 162 LE 163 Sbjct: 520 WR 521 >gi|41057064|ref|NP_957546.1| hypothetical protein pCD6_p4 [Clostridium difficile] gi|38196035|gb|AAR13708.1| unknown [Clostridium difficile] Length = 186 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 5/122 (4%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHL 104 ND + + S+I + S + + T Y + + + Sbjct: 64 EPQPNDEIFITPSELKTY--SNIDMYSARSSSFTVTYHYSYYKVTGDKNYTVNTSTIVKY 121 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GNS V ++ L G + + F S VK FQ +GL G+V S+T + Sbjct: 122 GNSGNPVHLVQLLLKKVGY---ALEVDSQFGNTTLSKVKSFQGSYGLTVDGIVGSATWKK 178 Query: 165 MN 166 Sbjct: 179 FA 180 >gi|172056176|ref|YP_001812636.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Exiguobacterium sibiricum 255-15] gi|171988697|gb|ACB59619.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Exiguobacterium sibiricum 255-15] Length = 210 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ FDA V+ +Q R GL G+V +T M Sbjct: 172 ATVTKRFDAETAEKVRAYQKRQGLTVDGVVGPATWNRM 209 >gi|296454225|ref|YP_003661368.1| hypothetical protein BLJ_1081 [Bifidobacterium longum subsp. longum JDM301] gi|296183656|gb|ADH00538.1| hypothetical protein BLJ_1081 [Bifidobacterium longum subsp. longum JDM301] Length = 372 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 68/235 (28%), Gaps = 20/235 (8%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET-----IAQTEK 80 L + + VL+ +D D A + + +P+ K+ + + + Sbjct: 61 LRTQEVTKGVLNAETRLGASLQYDDASDFAAASGTI---TQLPVAGKQINTGEQVYEMDG 117 Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 A R W + + V +L + L G + F+ Sbjct: 118 APVPL-FHGDRPFWRTIGDGV----SDGPDVTQLEQNLQELGFY--GGEVGPHFNWLTRE 170 Query: 141 AVKLFQMRHGLDPS---GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR-YV 196 A++ +Q GL G D +T+ +RI + L + + G+ + Sbjct: 171 AIRQWQRSLGLTGDAVTGTFDPNTVALAAAAP-IRITAVNAKLGQSQVSPASYTGVTLHA 229 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + A + G V+ + + N P + I Sbjct: 230 QATLTATQAAMFKAGDKAQVVLPDNTTVETTLASVDQGGQKTGDNGQATQPSARI 284 >gi|302346982|ref|YP_003815280.1| putative lipoprotein [Prevotella melaninogenica ATCC 25845] gi|302151113|gb|ADK97374.1| putative lipoprotein [Prevotella melaninogenica ATCC 25845] Length = 514 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 55/173 (31%), Gaps = 17/173 (9%) Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNS 290 + + + + +I + ++ Y +I++ D G + ++ WN Sbjct: 261 TVRYWIKDYVTNVEGAITKTYDSFKYEKNDYYDMTADINVTDYDGSKYYMWDAQKNYWNG 320 Query: 291 PEPPNFIFRQD--PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 E + Q K N + ++Y H T F +S C + N Sbjct: 321 HEWNSANPWQPVLANKSNP------NYPVSGSSYFHRT---GGFGREDAMNSS-CKNLPN 370 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 +L ++ P W + + + L + + I++++ Sbjct: 371 ANELGWYVKNGDPRWDDDKLWTAMGHLYKGGIWLRNK--AYINLITSFNSDQG 421 >gi|242073696|ref|XP_002446784.1| hypothetical protein SORBIDRAFT_06g022520 [Sorghum bicolor] gi|241937967|gb|EES11112.1| hypothetical protein SORBIDRAFT_06g022520 [Sorghum bicolor] Length = 367 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ ++E L+ G + + +F + E AVK +Q G +G++ Sbjct: 162 RTLRAGAEGEDVRAMQEALLKLGFYSGEEDMEYSSFSSGTERAVKTWQSTVGTSENGVMT 221 Query: 159 SSTLEAM 165 S LE + Sbjct: 222 SELLEWL 228 >gi|218437745|ref|YP_002376074.1| peptidoglycan-binding protein [Cyanothece sp. PCC 7424] gi|218170473|gb|ACK69206.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7424] Length = 531 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 8/87 (9%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R L G+ V+ ++ L + F+ ++AVK FQ + GL Sbjct: 283 PMTLTRILRWGDKGDDVKAVQCALNRFN--CNAGAEDGEFEDQTQAAVKAFQFKAGLLVD 340 Query: 155 GMVDSSTLEAMN------VPVDLRIRQ 175 G V T E + VP D + Sbjct: 341 GEVGPLTAEKLGFKVTVIVPPDQPLHL 367 >gi|23098711|ref|NP_692177.1| hypothetical protein OB1256 [Oceanobacillus iheyensis HTE831] gi|22776938|dbj|BAC13212.1| hypothetical protein [Oceanobacillus iheyensis HTE831] Length = 245 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + + V+ ++ +L G + F + E V FQ +H L G+V Sbjct: 59 TLKEDSVGLEVELVQVKLNHFGF---ETDVDGIFGSKTEKQVMNFQKKHDLIIDGIVGEE 115 Query: 161 TLEAM 165 T A+ Sbjct: 116 TWIAL 120 >gi|332800388|ref|YP_004461887.1| peptidoglycan-binding domain 1 protein [Tepidanaerobacter sp. Re1] gi|332698123|gb|AEE92580.1| Peptidoglycan-binding domain 1 protein [Tepidanaerobacter sp. Re1] Length = 413 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 9/104 (8%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P++ V+ L++ L G + + F AV+ FQ + +G+V Sbjct: 12 PLKKQKPLLKGSDVRHLQQVLKRLG--VFNARIDGVFGYETMQAVREFQRAFHIKQNGIV 69 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 D E + ++ + + + + Y V IP Sbjct: 70 DDDEFEILK-------ELMRCGINKWRTIQRDYRHSGYSPVPIP 106 >gi|15644434|ref|NP_229486.1| hypothetical protein TM1686 [Thermotoga maritima MSB8] gi|4982262|gb|AAD36753.1|AE001809_5 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 395 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 11/70 (15%) Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 KE+ + P N + + ++ +H T +P Sbjct: 307 KEIDPALYWFGEYISPRTPL-------NGLGTRYLQLSDP-TYAIHGTSKPWEIGKR--- 355 Query: 339 ETSGCVRVRN 348 + GC+R+ N Sbjct: 356 ISHGCIRMFN 365 >gi|134299346|ref|YP_001112842.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] gi|134052046|gb|ABO50017.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] Length = 255 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 28/156 (17%) Query: 230 ILHSRINRIMFNP---YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFV 283 ++S + + N +K ++ + + YL D + GKE Sbjct: 100 KMNSYLLNLQPNTKLLVSYPNPYDKKKMIIISKKNNLLYLYDQGYLVKIYPVATGKEKLF 159 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEF----------------YSRNNTYMHDTP 327 + N + + +H T Sbjct: 160 TPEGSFKI-ANKLPIKNADDPENLYGPRWMGLAVPDEKDKRANNDKRAPVGHKYGIHGTN 218 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 EP + GC+R+ N I++L + +T Sbjct: 219 EPNSIGT---HASGGCIRLNNHDILELYDMVPINTK 251 >gi|331269415|ref|YP_004395907.1| N-acetylmuramoyl-L-alanine amidase-like protein [Clostridium botulinum BKT015925] gi|329125965|gb|AEB75910.1| N-acetylmuramoyl-L-alanine amidase-like protein [Clostridium botulinum BKT015925] Length = 272 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI F +++K FQ L G+V +T Sbjct: 210 KQGARGNITKIIQKILINKNY---KIQADGIFGEATVNSIKHFQGNKNLVQDGVVGKNTW 266 Query: 163 EAM 165 +A+ Sbjct: 267 KAL 269 >gi|84503194|ref|ZP_01001279.1| hypothetical protein OB2597_16567 [Oceanicola batsensis HTCC2597] gi|84686760|ref|ZP_01014647.1| hypothetical protein 1099457000266_RB2654_22323 [Maritimibacter alkaliphilus HTCC2654] gi|114762609|ref|ZP_01442053.1| hypothetical protein 1100011001314_R2601_07153 [Pelagibaca bermudensis HTCC2601] gi|159046149|ref|YP_001541821.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|159046484|ref|YP_001542154.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|84388435|gb|EAQ01384.1| hypothetical protein OB2597_16567 [Oceanicola batsensis HTCC2597] gi|84665191|gb|EAQ11670.1| hypothetical protein RB2654_22323 [Rhodobacterales bacterium HTCC2654] gi|114544864|gb|EAU47869.1| hypothetical protein R2601_07153 [Roseovarius sp. HTCC2601] gi|157913908|gb|ABV95340.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|157914243|gb|ABV95673.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] Length = 221 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 42/170 (24%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + + L + + + V+ A L +E G +R V + R P I R + Sbjct: 60 FLPQRVLAKDGLVPGDIHVDAVARYLYHIEEGGTAMRYGVAIARGKLYEP-GTYTIKRKV 118 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P+W +++I +DP+ D + D Sbjct: 119 RWPHWQPTQNMI--------DRDPELYAD----IADG----------------------- 143 Query: 300 QDPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV 346 +PG NA+ S + F +TY +H TP P R +SGCVR+ Sbjct: 144 MEPGPENALGSRALYLFVGDRDTYLRIHGTPYPRSIG--GRA-SSGCVRM 190 >gi|328553819|gb|AEB24311.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens TA208] gi|328911326|gb|AEB62922.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens LL3] Length = 292 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 4/67 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V +++ L + G+ + +AV FQ +GL G+ Sbjct: 222 EPYTSGEKVYQVQNALAALYFYPEKGAANNGIDGIYGPKTANAVARFQSVNGLPSDGIYG 281 Query: 159 SSTLEAM 165 + + Sbjct: 282 PAVKAKI 288 >gi|134103030|ref|YP_001108691.1| hypothetical protein SACE_6599 [Saccharopolyspora erythraea NRRL 2338] gi|133915653|emb|CAM05766.1| hypothetical protein SACE_6599 [Saccharopolyspora erythraea NRRL 2338] Length = 135 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 6/82 (7%) Query: 87 DILSRGGWPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I+ W LP L G++ V L+ L + F ++ V Sbjct: 35 GIVGPLSWQALPSGSAMPVLQEGSTGGVVWDLQRTLNTL--IVAGLVQDGIFGPLTKAKV 92 Query: 143 KLFQMRHGLDPSGMVDSSTLEA 164 FQ + P G+V T A Sbjct: 93 VQFQQISSIAPDGIVGDRTWRA 114 >gi|262371780|ref|ZP_06065059.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter junii SH205] gi|262311805|gb|EEY92890.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter junii SH205] Length = 167 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TPE + + GC+R++N I++L + + Sbjct: 118 IYIHGTPESQPMGIPM---SHGCIRMQNDEILELFELVPEQA 156 >gi|303290915|ref|XP_003064744.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453770|gb|EEH51078.1| predicted protein [Micromonas pusilla CCMP1545] Length = 130 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 7/92 (7%) Query: 84 FYQDILSRGG-WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESA 141 Y I G WP L L + + V +L+ L G + + F + E+A Sbjct: 3 NYPQIAGEGKRWP-----VLRLDDGGLEVHKLQVLLDDLGYYSGEEDMQYWYFGSTTENA 57 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 + FQ GL +G+ +T A+ DL++ Sbjct: 58 LGTFQASTGLPDTGLTCVNTWRALVGEEDLKL 89 >gi|148270116|ref|YP_001244576.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga petrophila RKU-1] gi|147735660|gb|ABQ47000.1| ErfK/YbiS/YcfS/YnhG family protein [Thermotoga petrophila RKU-1] Length = 382 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 11/70 (15%) Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 KE+ + P N + + ++ +H T +P Sbjct: 294 KEIDPALYWFGEYISPRTPL-------NGLGTRYLQLSDP-TYAIHGTSKPWEIGKR--- 342 Query: 339 ETSGCVRVRN 348 + GC+R+ N Sbjct: 343 ISHGCIRMFN 352 >gi|254437710|ref|ZP_05051204.1| ErfK/YbiS/YcfS/YnhG superfamily [Octadecabacter antarcticus 307] gi|198253156|gb|EDY77470.1| ErfK/YbiS/YcfS/YnhG superfamily [Octadecabacter antarcticus 307] Length = 180 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/200 (11%), Positives = 50/200 (25%), Gaps = 46/200 (23%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + V + + +G +L +I + +L + V Sbjct: 19 LVVNAQEAPDRNSSSFAAQDWQDHFSTLGNGAILADITSRALHYWGSDGSYRLYPSSVPM 78 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKD-MMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + T +S I R P W +S+ ++D + + + + Sbjct: 79 SEELTRRGYSEIVRKRVGPTWTPTQSMRERDPTLPQMMESGE------------------ 120 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 N + + + +H T + R +SG Sbjct: 121 ---------------------PGNPLGTHAMYLDWP-AYLIHGTHDTRKIG---RQSSSG 155 Query: 343 CVRVRNIIDLDVWLLKDTPT 362 C+ + N + Sbjct: 156 CIGLYN-DHIAELFAVVQTG 174 >gi|56965746|ref|YP_177480.1| hypothetical protein ABC3988 [Bacillus clausii KSM-K16] gi|56911992|dbj|BAD66519.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 432 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 111 VQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 ++ ++++LI P+ G+ + V+ FQ R GL G+ TL + + Sbjct: 17 IKMVQKQLIRENPSALPNYGVDGHYGPETTDWVQRFQERKGLQVDGVAGPETLRRLRADI 76 Query: 170 DLRIRQ 175 R Sbjct: 77 VQRPDS 82 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+R++ +L D S + +F +SAV+ FQ G+ T+ Sbjct: 151 GDTGSLVRRIQHQLNEQDRADISIEVDGSFGPATKSAVEAFQEATEQRVDGIAGPVTMNL 210 Query: 165 MNVPVDLRIR 174 ++ I Sbjct: 211 LDFQAYQPIE 220 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +S V+ L+E L + + V+ FQ + L G+ +TL Sbjct: 79 RPDSSGNGVEILQEDL--LFFYIQQSTVDGNYGPGTTQGVRDFQFLNNLVVDGIAGPNTL 136 Query: 163 EAMN 166 + M+ Sbjct: 137 KKMD 140 >gi|118588451|ref|ZP_01545860.1| hypothetical protein SIAM614_24257 [Stappia aggregata IAM 12614] gi|118439157|gb|EAV45789.1| hypothetical protein SIAM614_24257 [Stappia aggregata IAM 12614] Length = 214 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 9/130 (6%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P ++ YWV + + + + R+ Q+ I + V + Sbjct: 70 PPGTVVVDTNNHFLYWVWENNTALRYGVGVGREGFQWFGRARIDRKALWPRWVPPP--EM 127 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVR 345 +P + N + + Y +H T EP R +SGC+R Sbjct: 128 LKRQPDLPRLVEGGATNNPLGPRAMYLYRDGTDLGYRLHGTLEPWSIG---RDVSSGCIR 184 Query: 346 VRNIIDLDVW 355 + D+ Sbjct: 185 MF-PEDIVDL 193 >gi|84516878|ref|ZP_01004236.1| hypothetical protein SKA53_06862 [Loktanella vestfoldensis SKA53] gi|84509346|gb|EAQ05805.1| hypothetical protein SKA53_06862 [Loktanella vestfoldensis SKA53] Length = 247 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 D G N + S + +R+ +H TP P R +SGCVR+ Sbjct: 171 DGGPDNPLGSRALYLFDGNRDTYLRIHGTPSPRSIG--GRA-SSGCVRM 216 >gi|83953107|ref|ZP_00961829.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. NAS-14.1] gi|83842075|gb|EAP81243.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. NAS-14.1] Length = 201 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 47/195 (24%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGKVG 214 V+S + +R+ + + +LV+I + ++ E+ + Sbjct: 32 VNSEATTETERDLTEAVRRNTSSFRTLDWQPYFSDTKNGAILVDIDSRAVHYWSEDQSIY 91 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 V + T + + + + P W S+ L ++P++ Sbjct: 92 KLYPSSVPLTEELTRRGRTSVIQKVVGPTWRPTPSM--------LERNPEW--------- 134 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFN 333 PG N + + + Y +H T + Sbjct: 135 ----------------------PAVIGPGPDNPLGTHALYLS--WTYYRIHGTHDTRKIG 170 Query: 334 NVVRFETSGCVRVRN 348 R ++GC+ + N Sbjct: 171 ---RRSSNGCIGLYN 182 >gi|300868169|ref|ZP_07112801.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] gi|300333793|emb|CBN57981.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] Length = 701 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 6/102 (5%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMV---DS 159 GN S+SV+ L+E+L ++ +D AV FQ + GL +G V Sbjct: 159 PGNRSLSVKELQEQLKTLDYYK--GLITGNYDRPTAKAVSQFQKAYPGLPDNGTVNLTTK 216 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 L+ L+ KL + R + Sbjct: 217 QLLDLATHSPQEDSVDEVQKLVLSDKLSSTPINGRAKTKGVA 258 >gi|315637697|ref|ZP_07892901.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Arcobacter butzleri JV22] gi|315478010|gb|EFU68739.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Arcobacter butzleri JV22] Length = 245 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 45/168 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 N+ + + + + V + D + P+ +I I NP W Sbjct: 99 SSKNLMKVNAKYDKKIENLKTYKVSTAKKDIKKPLGVGQITSITLNPVWYPTA------- 151 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI-NAMASTKIE 314 + + + G N M S KI Sbjct: 152 ----------------------------DTIQSFKKRGIDLPKVVKAGDKLNYMGSAKIN 183 Query: 315 FYSR----NNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + +H T + +E+SGC+R++N +++L L Sbjct: 184 LTHKVDGKETFRIHGTINEKTIGS---YESSGCIRMKNSEVVELVGLL 228 >gi|218459841|ref|ZP_03499932.1| hypothetical protein RetlK5_10219 [Rhizobium etli Kim 5] Length = 144 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 6/64 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV 346 G +N + + I Y +H T E F +SGC R+ Sbjct: 67 KARSAGLPDLVPAGPLNPLGARGIYLYKDRTDTLYRIHGTNEQSTVG---GFASSGCFRM 123 Query: 347 RNII 350 N Sbjct: 124 SNAD 127 >gi|108763212|ref|YP_631448.1| hypothetical protein MXAN_3249 [Myxococcus xanthus DK 1622] gi|108467092|gb|ABF92277.1| hypothetical protein MXAN_3249 [Myxococcus xanthus DK 1622] Length = 197 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S +++ +ERL G + S A +SAV+ FQ RHGL +G + Sbjct: 133 PGFESDALRAAQERLHNLGYAIEGERGSP--GASTKSAVRAFQRRHGLPETGQL 184 >gi|325262937|ref|ZP_08129673.1| spore cortex-lytic enzyme SleC [Clostridium sp. D5] gi|324032031|gb|EGB93310.1| spore cortex-lytic enzyme SleC [Clostridium sp. D5] Length = 420 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPS 154 P L +G S V++++E++ +I+G + + ++V+ FQ GL + Sbjct: 336 PGYILDIGASGDKVRQIQEQINVIAGAYPAIPKIAADGIYGPATAASVEKFQSVFGLPQT 395 Query: 155 GMVDSSTLEAMN 166 G VD T ++ Sbjct: 396 GTVDYKTWYKIS 407 >gi|317130271|ref|YP_004096553.1| carboxyl-terminal protease [Bacillus cellulosilyticus DSM 2522] gi|315475219|gb|ADU31822.1| carboxyl-terminal protease [Bacillus cellulosilyticus DSM 2522] Length = 489 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L L ++ + + L G F +E AV+ FQ G++ + Sbjct: 395 PINTDEDLQLDMNNSHIATAQVILKGLGYDPQRS--DGYFSKEMEEAVRQFQADMGIEVT 452 Query: 155 GMVDSSTLEAMNV 167 G++DS T + + Sbjct: 453 GVIDSETADQLQQ 465 >gi|298346070|ref|YP_003718757.1| hypothetical protein HMPREF0573_10944 [Mobiluncus curtisii ATCC 43063] gi|298236131|gb|ADI67263.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] Length = 559 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 14/106 (13%) Query: 98 PIRPLHL--GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P + G + V+ +R RL + S+ FD +AV FQ R GL SG Sbjct: 337 PPGTVVPQSGWNGTKVREVRARLGV----GVPLNASMTFDRATRNAVVRFQRRSGLPASG 392 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 +VD +T +R+ N+ + R ++ Sbjct: 393 VVDYATW--------VRLTGRPWNMDNFQMQPPPLKANREQRIDAM 430 >gi|92118846|ref|YP_578575.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gi|91801740|gb|ABE64115.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 187 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 46/175 (26%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + ++++ L V LR + VGR D RI Sbjct: 45 RQLVHFQSRYAPGTIVISTGERRLYLVLPDGQALRYGIGVGR-DGFRWGGVHRITAKKEW 103 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P ++++ P+ Sbjct: 104 PSWTPPAQMLRRR---------------------------------------PDLPRHMK 124 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 G N + + + +H + EP + +SGC R+ N + DL Sbjct: 125 GGIDNPLGARALYLG-STLYRIHGSNEPETIGH---AVSSGCFRMTNEDVKDLYD 175 >gi|332670253|ref|YP_004453261.1| peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] gi|332339291|gb|AEE45874.1| Peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] Length = 373 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 108 SVSVQR----LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V L+E L +G + + + +AV+ Q HGL +G VD +T Sbjct: 221 HDVVAARTSTLQESLSATGHY--TGTIDGIYGPATVAAVESLQSAHGLPVTGTVDRATDA 278 Query: 164 AMN 166 A+ Sbjct: 279 ALR 281 >gi|188583349|ref|YP_001926794.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179346847|gb|ACB82259.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 282 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%) Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 G N + + + ++ Y +H T EP +SGC+R+ +++IDL Sbjct: 152 PGGDRNPLGARALYLFKDGKDTLYRIHGTTEPSSIGE---AVSSGCIRMLNQDVIDL 205 >gi|153810701|ref|ZP_01963369.1| hypothetical protein RUMOBE_01085 [Ruminococcus obeum ATCC 29174] gi|149833097|gb|EDM88179.1| hypothetical protein RUMOBE_01085 [Ruminococcus obeum ATCC 29174] Length = 501 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ V+ L+ L +G + A+K +Q + GL G +T Sbjct: 435 GSKGNDVKLLQRLLKSNGFKGKDGKNLTIDGECGTNTVYAIKTYQTKKGLSVDGCAGPAT 494 Query: 162 LEAM 165 +++ Sbjct: 495 WKSI 498 >gi|328880761|emb|CCA54000.1| hypothetical protein SVEN_0713 [Streptomyces venezuelae ATCC 10712] Length = 137 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR 115 A + S + +A ++A + W ++P L G+S V V+ L+ Sbjct: 21 TALLGGLASSPAQAYWPQDLATCKQAYGSEVYLA----W-DIPTVVLAKGSSGVCVRGLQ 75 Query: 116 ERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLD--PSGMVDSSTLEAMNVPV 169 + L+ +G + D + +F +AV FQ R G+ G+V T + V Sbjct: 76 DALLEAGAVRAEDQPGFVDGSFGPKTYNAVVAFQRRAGVTGGADGVVGRYTWHHLIATV 134 >gi|307942391|ref|ZP_07657742.1| N-acetylmuramoyl-L-alanine amidase [Roseibium sp. TrichSKD4] gi|307774677|gb|EFO33887.1| N-acetylmuramoyl-L-alanine amidase [Roseibium sp. TrichSKD4] Length = 258 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G++ V R RE L D + FD +E FQ G+ Sbjct: 149 PDGLLRRGDAGPDVHRWREDLGAYRDKIGHPYPVPATGPFDHTLELVTMWFQKERGIQVD 208 Query: 155 GMVDSSTLEAMN 166 G+V LE M Sbjct: 209 GIVGPQVLEEMK 220 >gi|242035087|ref|XP_002464938.1| hypothetical protein SORBIDRAFT_01g029150 [Sorghum bicolor] gi|241918792|gb|EER91936.1| hypothetical protein SORBIDRAFT_01g029150 [Sorghum bicolor] Length = 371 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSK-------GLSVAFDAYVESAVKLFQMRHGLDPSG 155 G+ + L+ L G + + AFDA++E+AV+ +Q + L +G Sbjct: 57 RRGSHVAGLAELKRYLARFGYMPMPGAAAAAEREPTDAFDAHMEAAVRRYQSKLSLPVTG 116 Query: 156 MVDSSTLEAMNVP 168 +D++TL+ + P Sbjct: 117 QLDATTLDRIMAP 129 >gi|158422635|ref|YP_001523927.1| hypothetical protein AZC_1011 [Azorhizobium caulinodans ORS 571] gi|158329524|dbj|BAF87009.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 220 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 44/186 (23%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L+R K + ++V++P L VE +R V VG+ + + I R Sbjct: 67 LLRQVVDYPSKYPVGTIVVDVPNRYLYLVEKDGKAIRYGVGVGKQG-YSYRGWATIKRKE 125 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P+W ++I K + Sbjct: 126 KWPHWTPTPNMIAK-----------------------------------QPERYKPYAAG 150 Query: 300 QDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 G+ N + + Y + +H T EP +SGC+R+ ++IIDL Sbjct: 151 LPGGETNPLGPRALYLYDGDRDTMFRLHGTIEPDTIGTE---VSSGCIRLLNQDIIDLYE 207 Query: 355 WLLKDT 360 + T Sbjct: 208 RVPLGT 213 >gi|297158971|gb|ADI08683.1| hypothetical protein SBI_05563 [Streptomyces bingchenggensis BCW-1] Length = 395 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V++L + L G + + A AV+ +Q GL +G V Sbjct: 151 AYRALKQGAEGADVRQLEKNLSALGY--TGFTVDDEYTAGTADAVREWQEDLGLAETGAV 208 Query: 158 DSSTLEAMNVPVDLRIRQLQ 177 + P +R+ + Sbjct: 209 --ELGSVVFAPDAVRVDSVA 226 >gi|296131512|ref|YP_003638762.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] gi|296023327|gb|ADG76563.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] Length = 157 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 85 YQDIL--SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVE 139 Y+ ++ + G +P L G+S VQ L++ S +P+ F E Sbjct: 55 YRLLIPRATNGVVNVPC-WLKRGDSGAGVQALQKA-YNSCYKALYEPAIAEDGVFGPTTE 112 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ Q R G++ G+ T ++ P Sbjct: 113 DRVRQMQRREGIEVDGIAGEVTRNSIKWP 141 >gi|153955451|ref|YP_001396216.1| glycosyl hydrolase [Clostridium kluyveri DSM 555] gi|219855864|ref|YP_002472986.1| hypothetical protein CKR_2521 [Clostridium kluyveri NBRC 12016] gi|146348309|gb|EDK34845.1| Predicted glycosyl hydrolase [Clostridium kluyveri DSM 555] gi|219569588|dbj|BAH07572.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 306 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ S V ++++L G L + + +D AV Q G G++ T + Sbjct: 243 GHRSHLVLWIQQKLEQYGYLKENSYTQMLYDETTFQAVTELQKNWGRSTDGVLKLQTWD 301 >gi|86751464|ref|YP_487960.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86574492|gb|ABD09049.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 217 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 D G N + + ++ Y +H T EP +SGC+R+ +++IDL Sbjct: 151 DGGATNPLGPRALYLFKDGKDTLYRIHGTTEPETIGQ---AVSSGCIRMLNQDVIDLYAR 207 Query: 356 LLKDTP 361 + K Sbjct: 208 VPKGAK 213 >gi|90419330|ref|ZP_01227240.1| putative ErfK/YbiS/YcfS/YnhG [Aurantimonas manganoxydans SI85-9A1] gi|90336267|gb|EAS50008.1| putative ErfK/YbiS/YcfS/YnhG [Aurantimonas manganoxydans SI85-9A1] Length = 239 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 8/65 (12%) Query: 293 PPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--R 347 G N + + + R+ Y +H T + +SGC+R+ + Sbjct: 148 GGELRNGMKGGIDNPLGARALYLFKDGRDTLYRIHGTNQEWSIGK---AVSSGCIRMLNQ 204 Query: 348 NIIDL 352 ++IDL Sbjct: 205 DVIDL 209 >gi|330465557|ref|YP_004403300.1| peptidoglycan-binding domain 1 protein [Verrucosispora maris AB-18-032] gi|328808528|gb|AEB42700.1| peptidoglycan-binding domain 1 protein [Verrucosispora maris AB-18-032] Length = 359 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 ++P R L G V++L L G + + AV+ +Q G+ Sbjct: 114 GKVPAYRTLQPGVEGPDVEQLERNLKALGY--TGFTVDDEYTWATADAVRAWQDDLGVPE 171 Query: 154 SGMV 157 +G V Sbjct: 172 TGRV 175 >gi|326390405|ref|ZP_08211963.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] gi|325993523|gb|EGD51957.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] Length = 417 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ L +G + + F + V FQ L P G+V T A Sbjct: 42 GTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDGIVGPKTYAA 99 Query: 165 MNV 167 + Sbjct: 100 LET 102 >gi|149924298|ref|ZP_01912669.1| hypothetical protein PPSIR1_17095 [Plesiocystis pacifica SIR-1] gi|149814834|gb|EDM74401.1| hypothetical protein PPSIR1_17095 [Plesiocystis pacifica SIR-1] Length = 209 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Query: 101 PLHLG--NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG + + ++ RL G + +A++ FQ + GL+ +G D Sbjct: 139 KLKLGHLDPHDTPSGVQHRLRALGYYFGALDADH--GDRTAAALRRFQTKQGLEVTGEAD 196 Query: 159 SSTLEAMN 166 +T+ A+ Sbjct: 197 DATMSALR 204 >gi|308173260|ref|YP_003919965.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] gi|307606124|emb|CBI42495.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] Length = 292 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 4/67 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V +++ L + G+ + +AV FQ +GL G+ Sbjct: 222 EPYTSGEKVYQVQNALAALYFYPEKGAANNGIDGIYGPKTANAVARFQSVYGLPSDGIYG 281 Query: 159 SSTLEAM 165 + + Sbjct: 282 PAVKAKI 288 >gi|308799155|ref|XP_003074358.1| putative Helicase SKI2W (ISS) [Ostreococcus tauri] gi|116000529|emb|CAL50209.1| putative Helicase SKI2W (ISS) [Ostreococcus tauri] Length = 1701 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 56/189 (29%), Gaps = 24/189 (12%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF-DAYVESAVKLFQMRHGLD 152 WP + + + + +L+ +G + A + A+ FQ ++GL Sbjct: 43 WPMVKQNE----DDIYLMVLIHGKLVDAGFWVGEDDSDDMYFGATTKEALLYFQAQNGLT 98 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE--QKMGLRYVLVNIPAASLEAVEN 210 +G+VD T A+ + + + + A +++ E Sbjct: 99 ETGLVDDETWRAL------------LGEEQYRWGPPPGAIAFDETEFQAVAATTVKTEEK 146 Query: 211 GKVGLR-----STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 + + D P ++ +LR+D Sbjct: 147 NEEKMANPDHFMAEEDYAPDEYDPFADDDEYTHEPQGPSFEMSKGKRQHKWPILREDDGG 206 Query: 266 LKDNNIHMI 274 ++ + + ++ Sbjct: 207 MEVHKMQVL 215 Score = 41.2 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 7/91 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLD 152 WP L + + V +++ L G + F + +A+ FQ L Sbjct: 197 WPI-----LREDDGGMEVHKMQVLLAEQGYDSGEDDMEYWYFGSTTSNALMTFQAVKRLP 251 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 SG+ D T A+ V+ L R+ Sbjct: 252 ESGITDIKTWCALLG-VEELEDSPAETLARV 281 >gi|262164753|ref|ZP_06032491.1| VgrG protein [Vibrio mimicus VM223] gi|262027133|gb|EEY45800.1| VgrG protein [Vibrio mimicus VM223] Length = 991 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 26/191 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK------KLLEQKMGLRYVLVNIP 201 G+V TL A++ + + + + L + Y N Sbjct: 782 YSIGAVDGIVGKGTLLALDEALMDGWQVVPATQINWADSKFGILLGSVESKNDYSAYNKT 841 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L++ + + V V + + + +++ + KD + L Sbjct: 842 KGGLKSFYRTNLDKMTIVEVLKKQESRDMFAAGRFQLIPDT---------LKDAINKLSI 892 Query: 262 DPQYLKDNNIH 272 D + D NI Sbjct: 893 DTSLVFDKNIQ 903 >gi|228912015|ref|ZP_04075738.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis IBL 200] gi|228847619|gb|EEM92550.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis IBL 200] Length = 432 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLF 145 ++ G P + L +G++ V L++ + I + + +F + +VK F Sbjct: 336 IAEGNLESFPGQNLQIGSTGKYVNALQQYINKISQNYPEIGEITVDGSFGPATQKSVKKF 395 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q L +G+VDS T ++ Sbjct: 396 QSIFKLPQTGIVDSGTWYKIS 416 >gi|157737954|ref|YP_001490638.1| ErfK/YbiS/YcfS/YnhG family protein [Arcobacter butzleri RM4018] gi|157699808|gb|ABV67968.1| hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Arcobacter butzleri RM4018] Length = 245 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 49/168 (29%), Gaps = 45/168 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 N+ + + + + V + D + P+ +I I NP W Sbjct: 99 SSKNLMKVNAKYDKKIENLKTYKVSTAKKDIKKPLGVGQITSITLNPVWYP--------- 149 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI-NAMASTKIE 314 V ++ + G N M S KI Sbjct: 150 ------------------------TVD--TIESFKKRGIDLPKIVKAGDKLNYMGSAKIN 183 Query: 315 FYSR----NNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + +H T + +E+SGC+R++N +++L L Sbjct: 184 LTHKVDGKETFRIHGTINEKTIGS---YESSGCIRMKNSEVVELVGLL 228 >gi|269796632|ref|YP_003316087.1| peptidoglycan binding protein [Sanguibacter keddieii DSM 10542] gi|269098817|gb|ACZ23253.1| putative peptidoglycan binding protein [Sanguibacter keddieii DSM 10542] Length = 384 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G S V+ LR+ L +G + + G ++ + A+ +Q +G G+ Sbjct: 134 PGTSGADVEGLRDYLAAAG-SETTLGRGASYSPSLRRAITAYQRANGFPADGVFQP 188 >gi|294675751|ref|YP_003576366.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain-containing protein [Rhodobacter capsulatus SB 1003] gi|294474571|gb|ADE83959.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacter capsulatus SB 1003] Length = 203 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/197 (12%), Positives = 57/197 (28%), Gaps = 54/197 (27%) Query: 170 DLRIRQLQVNLMR-------IKKLLEQKMGLRYV-LVNIPAASLEAV-ENGKVGLRSTVI 220 + R N+ R + + LV+ + +L E+ + Sbjct: 40 EQREETANTNMRRNISSFRELDWKPYFSNTKNGIILVDTISRALHFWSEDESIYKLYPTS 99 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 V + T + I R + NP W S+ +++P++ Sbjct: 100 VPVSEELTRRGRTEIIRKVKNPTWSPTPSMK--------QRNPEW--------------- 136 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 + G N + + + + +H T + R + Sbjct: 137 ----------------PDFVEAGPDNPLGTRAMYLSWQY-YRIHGTHDTRKIG---RKSS 176 Query: 341 SGCVRV--RNIIDLDVW 355 +GC+ + +++ +L Sbjct: 177 NGCIGLFNQHVEELFEL 193 >gi|153212843|ref|ZP_01948460.1| VgrG protein [Vibrio cholerae 1587] gi|124116221|gb|EAY35041.1| VgrG protein [Vibrio cholerae 1587] Length = 1039 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 20/160 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F ++A++ FQ + Sbjct: 724 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQPSHQTHPS 783 Query: 151 ---LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 G+V + TL A++ + + + M +K L E Sbjct: 784 YSIGPVDGIVGNGTLLALDEALMDGWV-YENDEMDLKWLTVP--------KGQLTFDAEG 834 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + S + R + I +S + P Sbjct: 835 NDVDSSTFFSRKVHVPNMRGSVIGNSGVTIGRGLDLGNPP 874 >gi|91978705|ref|YP_571364.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91685161|gb|ABE41463.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 224 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 44/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +LQ +R + V+V+ L V G LR V VG+ + Sbjct: 62 PGVDPSELQPAYVRQLVAYKTNEPPGTVVVDPRQRFLYLVMEGGEALRYGVGVGKAGLE- 120 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + R P W + +I ++ + W Sbjct: 121 FTGTANVGRKAAWPNWTPTQGMIAREPQRYGK---------------------------W 153 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G N + + ++ Y +H T EP +SGC+R Sbjct: 154 AKGMSG--------GANNPLGPRALYLFKDGKDTLYRIHGTTEPETIGT---AVSSGCIR 202 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++IIDL + K + Sbjct: 203 MLNQDIIDLYSRVPKGSK 220 >gi|260576136|ref|ZP_05844129.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sp. SW2] gi|259021616|gb|EEW24919.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sp. SW2] Length = 198 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 47/187 (25%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVG 222 M +R ++ ++ + +LV+I + +L E+ + V Sbjct: 38 EMEPSSTVRANISSFRMLDWREHFDNTRKG-AILVDITSRALHFWSEDQTIYKLYPTSVP 96 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 D T + I + P W ++ + ++P++ Sbjct: 97 LTDDLTRRGRTEIVEKVVGPSWRPTPAMRE--------RNPEW----------------- 131 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETS 341 PG N + + + Y +H T + R ++ Sbjct: 132 --------------PEFIGPGPDNPLGTHAMYLS--WTYYRIHGTHDTRKIG---RRSSN 172 Query: 342 GCVRVRN 348 GC+ + N Sbjct: 173 GCIGLYN 179 >gi|125583634|gb|EAZ24565.1| hypothetical protein OsJ_08327 [Oryza sativa Japonica Group] Length = 372 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + RL++ L G L P S AFD +E+A+ +Q GL+ +G +D+ T Sbjct: 56 GEEREGLGRLKDYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDT 115 Query: 162 LEAMNVP 168 ++ M P Sbjct: 116 VDQMVAP 122 >gi|125541078|gb|EAY87473.1| hypothetical protein OsI_08881 [Oryza sativa Indica Group] Length = 372 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + RL++ L G L P S AFD +E+A+ +Q GL+ +G +D+ T Sbjct: 56 GEEREGLGRLKDYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDT 115 Query: 162 LEAMNVP 168 ++ M P Sbjct: 116 VDQMVAP 122 >gi|192361798|ref|YP_001981559.1| general secretion pathway protein a [Cellvibrio japonicus Ueda107] gi|190687963|gb|ACE85641.1| general secretion pathway protein a [Cellvibrio japonicus Ueda107] Length = 587 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ V + E+ D P+ + +++ V+LFQ H + P G+ Sbjct: 490 PGVLQLGDQGPLVTWVAEQFARL-DKQPAPLTRQYYTDKLKTRVELFQASHKMVPDGIFG 548 Query: 159 SSTLEAMN 166 TL +N Sbjct: 549 VQTLRRLN 556 >gi|262190080|ref|ZP_06048374.1| VgrG protein [Vibrio cholerae CT 5369-93] gi|262034045|gb|EEY52491.1| VgrG protein [Vibrio cholerae CT 5369-93] Length = 432 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 133 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQSHPS 192 Query: 151 ---LDPSGMVDSSTLEAMN 166 G+V TL A++ Sbjct: 193 YSIGPVDGIVGKGTLLALD 211 >gi|254284375|ref|ZP_04959343.1| general secretion pathway protein A [gamma proteobacterium NOR51-B] gi|219680578|gb|EED36927.1| general secretion pathway protein A [gamma proteobacterium NOR51-B] Length = 559 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 P+ LG+ S V L R D + F+ +E+ V+LFQ GL G+V Sbjct: 470 SGPVGLGDESP-VVTLVARDFAELDDQATPLAETRFNQRLEARVRLFQRSEGLAADGVVG 528 Query: 159 SSTL 162 ++T+ Sbjct: 529 AATM 532 >gi|149181804|ref|ZP_01860294.1| carboxyl-terminal processing protease [Bacillus sp. SG-1] gi|148850443|gb|EDL64603.1| carboxyl-terminal processing protease [Bacillus sp. SG-1] Length = 480 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P +PL ++ V+ ++ L G + F+ E+AV+ FQ +H L + Sbjct: 384 PLETEKPLAREMNNEQVKNAQQMLEGLGY--NPGRIDGYFNQATEAAVRSFQQKHELAAT 441 Query: 155 GMVDSST 161 G +D+ T Sbjct: 442 GKIDTDT 448 >gi|115448591|ref|NP_001048075.1| Os02g0740700 [Oryza sativa Japonica Group] gi|46390313|dbj|BAD15762.1| putative zinc metalloproteinase [Oryza sativa Japonica Group] gi|113537606|dbj|BAF09989.1| Os02g0740700 [Oryza sativa Japonica Group] Length = 372 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + RL++ L G L P S AFD +E+A+ +Q GL+ +G +D+ T Sbjct: 56 GEEREGLGRLKDYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDTDT 115 Query: 162 LEAMNVP 168 ++ M P Sbjct: 116 VDQMVAP 122 >gi|319782836|ref|YP_004142312.1| N-acetylmuramoyl-L-alanine amidase family 2 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168724|gb|ADV12262.1| N-acetylmuramoyl-L-alanine amidase family 2 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 252 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMV 157 L G++ ++ L+ L + G +S FD E+ V+ FQ G+ Sbjct: 179 GATLTTGDTGGDIEALQSMLALYGY---GVEISGVFDRQTEAVVEAFQRHFRPRKVDGVA 235 Query: 158 DSSTLEAMNV 167 D STL + Sbjct: 236 DGSTLRTLQR 245 >gi|313608100|gb|EFR84168.1| carboxypeptidase family protein [Listeria monocytogenes FSL F2-208] Length = 382 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 294 STKVYQNGDFGDDVRTIETMLKALDY--NVGKVDGLYDIDTKYAVERFQAANKLDVTGIM 351 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 352 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 382 >gi|284802297|ref|YP_003414162.1| hypothetical protein LM5578_2053 [Listeria monocytogenes 08-5578] gi|284995439|ref|YP_003417207.1| hypothetical protein LM5923_2004 [Listeria monocytogenes 08-5923] gi|284057859|gb|ADB68800.1| hypothetical protein LM5578_2053 [Listeria monocytogenes 08-5578] gi|284060906|gb|ADB71845.1| hypothetical protein LM5923_2004 [Listeria monocytogenes 08-5923] Length = 496 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 408 STKVYQNGDFGDDVRTIETMLKALDY--NVGKVDGLYDIDTKYAVERFQAANKLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|269957944|ref|YP_003327733.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269306625|gb|ACZ32175.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 363 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 I + G P R L G V +L+ L+ +G L F A AV+ +Q Sbjct: 110 IAAVGTVPAF--RDLSQGMKGEDVAQLQRFLVDAGYLKGRADGD--FGAATTVAVRAWQR 165 Query: 148 RHGLDPSGMV 157 ++ G+V Sbjct: 166 ILDVERDGVV 175 >gi|290893019|ref|ZP_06556008.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290557379|gb|EFD90904.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 496 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 408 STKVYQNGDFGDDVRTIETMLKALDY--NVGKVDGLYDIDTKYAVERFQAANKLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|217963996|ref|YP_002349674.1| periplasmic protease [Listeria monocytogenes HCC23] gi|217333266|gb|ACK39060.1| periplasmic protease [Listeria monocytogenes HCC23] gi|307571434|emb|CAR84613.1| carboxypeptidase, ctpA-family [Listeria monocytogenes L99] Length = 496 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 408 STKVYQNGDFGDDVRTIETMLKALDY--NVGKVDGLYDIDTKYAVERFQAANKLDVTGIM 465 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 T + + +++ L + K L++ Sbjct: 466 TGVTTDKLVELTQKHLKETDPQLQKAKALVK 496 >gi|213583711|ref|ZP_03365537.1| hypothetical protein SentesTyph_21815 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 35 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 12/31 (38%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + AVK FQ GL G++ Sbjct: 5 TDNIYTPELVEAVKRFQQWQGLTDDGVIGPR 35 >gi|239828311|ref|YP_002950935.1| carboxyl-terminal protease [Geobacillus sp. WCH70] gi|239808604|gb|ACS25669.1| carboxyl-terminal protease [Geobacillus sp. WCH70] Length = 480 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V+ ++ L G F ESAVK FQ + L +G +D Sbjct: 391 KELSFDMNNEQVKSAQQMLKGLGF--DPGRTDGYFSKETESAVKAFQKANKLPQTGKIDK 448 Query: 160 STLEAMNVPVDLRIR 174 +T E + V IR Sbjct: 449 NTAEVLQAKVMDAIR 463 >gi|153830422|ref|ZP_01983089.1| VgrG protein [Vibrio cholerae 623-39] gi|148874096|gb|EDL72231.1| VgrG protein [Vibrio cholerae 623-39] Length = 1037 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 31/214 (14%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQ-----TEKAIAFYQDILSRGGWPELPIRPLHL 104 + +D P+ ++T + K + + R Sbjct: 674 ASLPTIMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQ------ASAYRQ 727 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-----------LDP 153 GN S V+ L+E LI G G F ++A++ FQ + Sbjct: 728 GNHSDEVKLLQEALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQPSHQTHPSYSIGPV 787 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G+V + TL A++ + + + M +K L E + Sbjct: 788 DGIVGNGTLLALDEALMDGWV-YENDEMDLKWLTVP--------KGQLTFDAEGNDVDSS 838 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 S + R + I +S + P Sbjct: 839 TFFSRKVHVPNMRGSVIGNSGVTIGRGLDLGNPP 872 >gi|147790365|emb|CAN59960.1| hypothetical protein VITISV_011608 [Vitis vinifera] Length = 319 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 7/106 (6%) Query: 105 GNSSVSVQRLRERLIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+ + +L++ L G L + + FD +E A+K +Q + L SG +D Sbjct: 44 GHKVKDIHKLKKYLQQFGYLSYSHSEHQTHADNDDFDDLLEFAIKTYQTNYYLKASGNLD 103 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 S T+ M P + R++ + S Sbjct: 104 SETVSVMVKPRCGVADIINGT-SRMRSGSRSYPHGYGSFHTVAHYS 148 >gi|315604691|ref|ZP_07879754.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313703|gb|EFU61757.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 353 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 12/157 (7%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP--IISKETIAQTEKA 81 I L + D +D A + P + + + T Sbjct: 30 FDGATATITRGDLSGETAVQGNLHYADSYDLKSAFTGVITALPTPGTTLEQGSHVYTVAG 89 Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + Y + W + G S V++L L G + FD + Sbjct: 90 NSAYLLHGATPAWRDFSE-----GMSDGADVKQLETALSELGYF--QATPNEHFDWNTIA 142 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 A+K +Q GL G + T+ + P D+R+ L+ Sbjct: 143 AIKRWQKALGLTQDGTLPLGTV--LFAPEDVRVGALK 177 >gi|256751507|ref|ZP_05492384.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749591|gb|EEU62618.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] Length = 422 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ L +G + + F + V FQ L P G+V T A Sbjct: 47 GTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDGIVGPKTYAA 104 Query: 165 MNV 167 + Sbjct: 105 LET 107 >gi|227498873|ref|ZP_03929013.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904325|gb|EEH90243.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 219 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL +G+ V+ ++ +L G L+ + +E V++FQ H L +G VD Sbjct: 17 PLKVGDKGWKVKTVQTKLNTLGL---KTPLTGKYSRDLEKQVRIFQKTHKLPVTGKVDDK 73 Query: 161 TL 162 T Sbjct: 74 TY 75 >gi|167036901|ref|YP_001664479.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115320|ref|YP_004185479.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855735|gb|ABY94143.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928411|gb|ADV79096.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 422 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ L +G + + F + V FQ L P G+V T A Sbjct: 47 GTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDGIVGPKTYAA 104 Query: 165 MNV 167 + Sbjct: 105 LET 107 >gi|315654655|ref|ZP_07907561.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315491119|gb|EFU80738.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 658 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 98 PIRPLHL--GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P + G + V+ +R RL + S+ FD +AV FQ R GL SG Sbjct: 436 PPGTVVPQSGWNGTKVREVRARLGV----GVPLNASMTFDRATRNAVVRFQRRSGLPASG 491 Query: 156 MVDSSTLEAMNVPV 169 +VD +T + Sbjct: 492 VVDYATWVRLTGRP 505 >gi|140223|sp|P05448|YAT5_RHOBL RecName: Full=Putative L,D-transpeptidase in ATP synthase subunits region ORF 5; Flags: Precursor gi|45975|emb|CAA77311.1| URF 5 [Rhodobacter blasticus] Length = 189 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 21/182 (11%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 L Q V N+ + A + L G+ ++ W Sbjct: 28 LSQDAAPATVRNNVSGFQMHAWRDHFDSL------GKPMLVADTFSRALHY------WNA 75 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + + L I K + P++ PG N Sbjct: 76 EGGDHR--IFPTSVPISDDLTKRGYTEIVRKKEGPSWTPTPSQMARYPDWKPI-GPGPDN 132 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + + +H T + R + GC+ + N ++ L + P +R Sbjct: 133 PLGTHAMYLSWPAYI-IHGTHDTRKIG---RRSSDGCIGLYN--EMIAELFQLCPVGTRV 186 Query: 367 HI 368 + Sbjct: 187 RV 188 >gi|91776201|ref|YP_545957.1| ErfK/YbiS/YcfS/YnhG [Methylobacillus flagellatus KT] gi|91710188|gb|ABE50116.1| ErfK/YbiS/YcfS/YnhG [Methylobacillus flagellatus KT] Length = 160 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%) Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 N + + + Y+H TPE + GC+R+RN +L + +T Sbjct: 103 NRLGNVD---SMQRYIYIHGTPECEPMGE---AHSHGCIRMRNADVRELFDLVPVNT 153 >gi|315657433|ref|ZP_07910315.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491905|gb|EFU81514.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 658 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 14/106 (13%) Query: 98 PIRPLHL--GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P + G + V+ +R RL + S+ FD +AV FQ R GL SG Sbjct: 436 PPGTVVPQSGWNGTKVREVRARLGV----GVPLNASMTFDRATRNAVVRFQRRSGLPASG 491 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 +VD +T +R+ N+ + R ++ Sbjct: 492 VVDYATW--------VRLTGRPWNMDNFQMQPPPLKANREQRIDAM 529 >gi|294677991|ref|YP_003578606.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter capsulatus SB 1003] gi|294476811|gb|ADE86199.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter capsulatus SB 1003] Length = 207 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 19/92 (20%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDP-------------GKINAMASTKIEFY-SRN--NT 321 G+ +V+W S +P + ++ P G N + + + Y + + Sbjct: 105 GQATVARKVEWPSWKPTPEMVKRSPSHYARYAETGMPGGPGNPLGARAMYLYQNGHDTGI 164 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 +H T EP + ++GC+R+ N + Sbjct: 165 RIHGTIEPSSIGH---AVSNGCLRMVNDHVMA 193 >gi|192292423|ref|YP_001993028.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris TIE-1] gi|192286172|gb|ACF02553.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris TIE-1] Length = 288 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 86 QDILSRG--GWPE----LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + + + G W E +P L G V+ +++ L G ++ ++D Sbjct: 187 RSLAASGVGLWVEPARIVPGPALKQGTEGDEVRLMQQALADYGY---RVPVNGSYDHATT 243 Query: 140 SAVKLFQMRHG-LDPSGMVDSSTLE 163 V FQ G+ D+STL Sbjct: 244 DVVTAFQRHFRPEKVDGIADASTLA 268 >gi|325291502|ref|YP_004277366.1| hypothetical protein AGROH133_02862 [Agrobacterium sp. H13-3] gi|325059355|gb|ADY63046.1| hypothetical protein AGROH133_02862 [Agrobacterium sp. H13-3] Length = 257 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 46/205 (22%) Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 + + T +A + I ++ R + ++VN L + G Sbjct: 77 NDVYGPVT-DAGYALPAIPINRVNEKFRRQIVEFQNNERPGTIIVNTRERFLYYILPGNR 135 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 +R + VG+ + + P W P K+M + +Y++ Sbjct: 136 AVRYGIGVGKAGFA-WAGEAYVAWKQEWPMWHPP-----KEMADRKPEVAKYVEAG---- 185 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEP 329 PG N + + + ++ +H +PE Sbjct: 186 --------------------------MGPGLSNPLGARAMYLFNEKGQDTLFRIHGSPEW 219 Query: 330 ILFNNVVRFETSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 220 ASIGT---AASSGCIRMINQDVIDL 241 >gi|289579043|ref|YP_003477670.1| peptidoglycan-binding protein [Thermoanaerobacter italicus Ab9] gi|289528756|gb|ADD03108.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter italicus Ab9] Length = 420 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ L +G + + F + V FQ L P G+V T Sbjct: 45 GTYGTDVKELQAMLNKTGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDGIVGPKTYAV 102 Query: 165 MNV 167 + Sbjct: 103 LET 105 >gi|229514626|ref|ZP_04404087.1| VgrG protein [Vibrio cholerae TMA 21] gi|229348606|gb|EEO13564.1| VgrG protein [Vibrio cholerae TMA 21] Length = 1025 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 12/100 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G+V TL A++ + + + M +K L Sbjct: 782 YSIGAVDGIVGKGTLLALDEALMDGWV-YENDEMDLKWLT 820 >gi|256824798|ref|YP_003148758.1| peptidoglycan binding protein [Kytococcus sedentarius DSM 20547] gi|256688191|gb|ACV05993.1| putative peptidoglycan binding protein [Kytococcus sedentarius DSM 20547] Length = 335 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 5/112 (4%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 ++P R + G V++L++ L+ G + A++ +Q G+D Sbjct: 87 GKVPAFRKIGAGTEGADVKQLQQLLMQGGHFA--GTVDGTAGKDTVQAIRAWQRSQGIDA 144 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 +G+V + + VP L ++R L L P+ + Sbjct: 145 TGVVGPG--DVIYVPSLPARVTLDTEVVRTGATLSGGEEALQGLPAAPSFEM 194 >gi|87304054|ref|ZP_01086646.1| hypothetical protein WH5701_16835 [Synechococcus sp. WH 5701] gi|87281509|gb|EAQ73550.1| hypothetical protein WH5701_16835 [Synechococcus sp. WH 5701] Length = 163 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 52/159 (32%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + V++ L ENGKV + + +G + T I R +P Sbjct: 34 ADMSIEVSLKNRYLTLFENGKVIGKYPIAIGAPESPTIPGQFDIQRKDASP--------- 84 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 + +KGK + PG N + Sbjct: 85 ---------------------IYHKKGKVI-------------------APGPDNPVGVR 104 Query: 312 KIEFY--SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + R+ +H T P N + GC+R+ N Sbjct: 105 YMPYVRIGRDEYAIHGTAWPSWVNLRA-AVSLGCIRMLN 142 >gi|304390171|ref|ZP_07372125.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326653|gb|EFL93897.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 635 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 98 PIRPLHL--GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P + G + V+ +R RL + S+ FD +AV FQ R GL SG Sbjct: 413 PPGTVVPQSGWNGTKVREVRARLGV----GVPLNASMTFDRATRNAVVRFQRRSGLPASG 468 Query: 156 MVDSSTLEAMNVPV 169 +VD +T + Sbjct: 469 VVDYATWVRLTGRP 482 >gi|237793906|ref|YP_002861458.1| hypothetical protein CLJ_B0656 [Clostridium botulinum Ba4 str. 657] gi|229260455|gb|ACQ51488.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 694 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 11/146 (7%) Query: 34 SVLDEII----NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 S +DE + + + + I + + S++T KA+ + I Sbjct: 129 STMDEFVLASTGDPNVRKIQQNLNRDYYETIGLIPCNG-VYSRDTNRALIKALQVEEGIT 187 Query: 90 SRGGWPELPIR--PLHLGNSSVS--VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G W P G++S V L+ L ++G G F + +A+K F Sbjct: 188 PDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNG--IDPNGFDGLFGNGLSNAIKEF 245 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDL 171 Q L G ++ V Sbjct: 246 QSFCALPADGYAGKQVWASLLVSTGD 271 >gi|15616161|ref|NP_244466.1| carboxy-terminal processing protease [Bacillus halodurans C-125] gi|10176223|dbj|BAB07318.1| carboxy-terminal processing protease [Bacillus halodurans C-125] Length = 479 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 PL L + ++ + L G F+ E AV+ FQ L+ +G++D Sbjct: 387 EPLELDMLNDQIEHAQMMLKGLGF--EPGRTDGYFEEQTEKAVRAFQDSQELETTGVLDE 444 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIK 184 T A+ + +R Q N +++ Sbjct: 445 ETAIALQQSIVDLVRD-QENDQQLR 468 >gi|158422481|ref|YP_001523773.1| putative chitinase [Azorhizobium caulinodans ORS 571] gi|158329370|dbj|BAF86855.1| putative chitinase [Azorhizobium caulinodans ORS 571] Length = 301 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 94 WPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W ++ L + + L+E L G S + +A++ FQ R+GL Sbjct: 219 WSQIGTGALWRAAGADDATADLQESLNALGY---SLTVDGRQGPATTAAIRDFQSRNGLK 275 Query: 153 PSGMVDSST 161 G+ T Sbjct: 276 ADGIAGPVT 284 >gi|320529545|ref|ZP_08030629.1| 3D domain protein [Selenomonas artemidis F0399] gi|320138166|gb|EFW30064.1| 3D domain protein [Selenomonas artemidis F0399] Length = 234 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +VQ ++E LI +G L+ G A +A++ Q H L G+ +T Sbjct: 56 KEGMRGGAVQHVQELLIKAGYLE-EGGADGVAGAKTRAAIERCQTDHMLVVDGICGEATY 114 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 + + + + + + + + R + V+ A S Sbjct: 115 --LVLSGGVPYDPVALGIRDERSEQVSRGSGRSLFVSATAYSAH 156 >gi|313896950|ref|ZP_07830497.1| 3D domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974397|gb|EFR39865.1| 3D domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 234 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +VQ ++E LI +G L+ G A +A++ Q H L G+ +T Sbjct: 56 KEGMRGGAVQHVQELLIKAGYLE-EGGADGVAGAKTRAAIERCQTDHMLVVDGICGEATY 114 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 + + + + + + + + R + V+ A S Sbjct: 115 --LVLSGGVPYDPVALGIRDERSEQVSRGSGRSLFVSATAYSAH 156 >gi|291303383|ref|YP_003514661.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290572603|gb|ADD45568.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 381 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ V++L + L G + F A +AV+ +Q GL +G V Sbjct: 144 MKVGDEGSDVKQLEKNLAKLGY--DGFTVDKEFTADTATAVREWQDDLGLKETGTVT 198 >gi|254463995|ref|ZP_05077406.1| ErfK/YbiS/YcfS/YnhG [Rhodobacterales bacterium Y4I] gi|206684903|gb|EDZ45385.1| ErfK/YbiS/YcfS/YnhG [Rhodobacterales bacterium Y4I] Length = 200 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 7/94 (7%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMH 324 L I K + P R + G N + + + +H Sbjct: 102 LTRRGYSQIVRKAENPSWTPTQSMRERDPTLPARIEGGVPGNPLGTRAMYLDWP-AYLVH 160 Query: 325 DTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 T + R +SGC+ + N + +L + Sbjct: 161 GTHDTRKIG---RQSSSGCIGLYNQHVEELYEMV 191 >gi|126668023|ref|ZP_01738987.1| putative transglycosylase protein [Marinobacter sp. ELB17] gi|126627533|gb|EAZ98166.1| putative transglycosylase protein [Marinobacter sp. ELB17] Length = 480 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L+ +L I G + SA+K Q HGL +G + TL ++ P Sbjct: 340 AELKALQRQLAIYGY--KPGTIDGIMGQNTRSAIKRLQREHGLPETGWLSRETLLSLVEP 397 >gi|150390170|ref|YP_001320219.1| peptidoglycan binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950032|gb|ABR48560.1| Peptidoglycan-binding domain 1 protein [Alkaliphilus metalliredigens QYMF] Length = 148 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ +L G + ++A+K FQ + L G+V T +A+ + Sbjct: 97 IQSKLNSLGY--DCGVVDGIMGLKTKAAIKAFQKDNDLTVDGIVGPQTRKALEI 148 >gi|296446889|ref|ZP_06888825.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296255564|gb|EFH02655.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 187 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 277 KGKEVFVEEVDWNSPEPPNFI---FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 GK V + V + + F + N M + RN +H T + + Sbjct: 95 DGKYVNPDWVPPTVVKRDHPELPDFIRGGSPHNPMGVRALTL-DRNQVAIHGTTHKMRAS 153 Query: 334 NVVRFETSGCVRV--RNIIDLDV 354 + GC+R+ +++DL Sbjct: 154 VGT-AASYGCIRMLNEDVVDLYE 175 >gi|239979525|ref|ZP_04702049.1| hypothetical protein SalbJ_08818 [Streptomyces albus J1074] gi|291451393|ref|ZP_06590783.1| predicted protein [Streptomyces albus J1074] gi|291354342|gb|EFE81244.1| predicted protein [Streptomyces albus J1074] Length = 301 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 14/80 (17%) Query: 100 RPLHLGNSSVSVQRLRER------------LIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 L+ G+S L++ L G G+ A+ E AVK Q Sbjct: 224 GRLYAGHSDTQDALLQQISTTWEVVEAQCLLEHRGY--RIGGIDGAYGPATERAVKRLQD 281 Query: 148 RHGLDPSGMVDSSTLEAMNV 167 R GL G++ T EA+ Sbjct: 282 REGLVVDGIMGPHTWEALRR 301 >gi|254487693|ref|ZP_05100898.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. GAI101] gi|214044562|gb|EEB85200.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter sp. GAI101] Length = 216 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 47/188 (25%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR-YVLVNIPAASLEAV-ENGKVGLRSTVIV 221 + V +R+ + + VLV+I + ++ E+ + V Sbjct: 54 EVERDVTESVRRNISSFRTLDWQPYFDNTRNGAVLVDIDSRAVHFWSEDQSIYKLYPSSV 113 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 D T + + + + P W S+ L+++P++ Sbjct: 114 PLTDELTRRGRTSVIQKVVGPTWRPTPSM--------LKRNPEW---------------- 149 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFET 340 + G N + + + Y +H T + R + Sbjct: 150 ---------------PAVIEAGPDNPLGTHALYLS--WTYYRIHGTHDTRKIG---RRSS 189 Query: 341 SGCVRVRN 348 +GC+ + N Sbjct: 190 NGCIGLYN 197 >gi|323139838|ref|ZP_08074870.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322394918|gb|EFX97487.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 273 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 291 PEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 P+ D N + + + ++ + +H T EP +SGC+R+ Sbjct: 197 LRRPDLPTHMDGSLENPLGARALYLFKGGKDTLFRIHGTNEPDTIGK---AVSSGCIRMM 253 Query: 348 NIIDL 352 N + Sbjct: 254 NADAI 258 >gi|284028528|ref|YP_003378459.1| peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] gi|283807821|gb|ADB29660.1| Peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] Length = 359 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 5/120 (4%) Query: 95 PELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P + L G S V +L + L+ G L + F + +AV +Q G Sbjct: 115 GTVPLYKTLEQGVSGPDVLQLEQYLVSGGWLKVKA--NTTFGSATTAAVLDWQDATGQPE 172 Query: 154 SGMVDSSTLEAMNVP--VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 +G V L VP V ++ Q+ L L V+V + A V+ G Sbjct: 173 TGQVKPGQLVVRPVPIRVAVQEAQIGDQLGGGTPLYTFSTTQPKVVVGLDVAKQHLVKKG 232 >gi|303286976|ref|XP_003062777.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455413|gb|EEH52716.1| predicted protein [Micromonas pusilla CCMP1545] Length = 370 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G +S V L+ L G G + F +AVK +Q +G+ PSG + EA Sbjct: 96 GETSERVAELQRYLAGEGHYKYRDGATGYFGPITVNAVKNWQRFYGVKPSGGWGVESREA 155 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 + RI +L + + G R ++ P Sbjct: 156 YLR--ERRILELGAREGKAARGRIGGPGGREDVIAEPDF 192 >gi|148979384|ref|ZP_01815490.1| putative general secretion pathway protein A [Vibrionales bacterium SWAT-3] gi|145961820|gb|EDK27113.1| putative general secretion pathway protein A [Vibrionales bacterium SWAT-3] Length = 546 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + L G +V L ++S L S FD ++ V+ FQ G+ Sbjct: 458 WKQPLRETLKEGYQGEAVALLDL--LLSEVLGEVVSGSDVFDYELKMKVEAFQTWQGMSV 515 Query: 154 SGMVDSSTLEAMNVPVDLRIRQL 176 G+ TL + R+ QL Sbjct: 516 DGIAGQRTLARL-----QRLAQL 533 >gi|42524982|ref|NP_970362.1| hypothetical protein Bd3639 [Bdellovibrio bacteriovorus HD100] gi|39577193|emb|CAE81016.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 215 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 G N + + + +H TP+ R + GC+R+ Sbjct: 146 PGGDYNGLGNMPYAVFISGGFALHGTPQGNWSKLGTRA-SHGCIRMH 191 >gi|85714964|ref|ZP_01045949.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Nitrobacter sp. Nb-311A] gi|85698161|gb|EAQ36033.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Nitrobacter sp. Nb-311A] Length = 285 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 12/102 (11%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P + L G+ +VQ L++ L G + FD V FQ Sbjct: 191 GHWVRPAPIVAGDVLKTGSEGDNVQALQQSLARYGY---GIKATGKFDTATTEVVTAFQR 247 Query: 148 RHG-LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 G+ D STL + + L + Sbjct: 248 HFRPEKVDGLADQSTL----TTLQALLESLPAQTAEASGITR 285 >gi|114320621|ref|YP_742304.1| lytic murein transglycosylase [Alkalilimnicola ehrlichii MLHE-1] gi|114227015|gb|ABI56814.1| lytic murein transglycosylase [Alkalilimnicola ehrlichii MLHE-1] Length = 400 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 3/81 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I G P P +V+RL+E L G + + AV+ FQ Sbjct: 319 RIAGTGDLKTRPAEPPEA-MRIEAVKRLQETLNALGY--EAGPVDGQPGRQTRKAVRAFQ 375 Query: 147 MRHGLDPSGMVDSSTLEAMNV 167 GL G L+A Sbjct: 376 QDAGLPADGHPSPRVLQAAEA 396 >gi|295839236|ref|ZP_06826169.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295827362|gb|EFG65354.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 238 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V L+ERL + G G S FD + A+ +Q+ G G Sbjct: 162 VAAPVLRRGDSGPEVGELKERLRLVGIYPGGDGDS--FDRTLAYALTTYQITRGARDEHG 219 Query: 156 MVDSSTLEAMN 166 + S T + Sbjct: 220 VYGSDTRTKLE 230 >gi|190572347|ref|YP_001970192.1| putative peptidoglycan-binding motif protein [Stenotrophomonas maltophilia K279a] gi|190010269|emb|CAQ43877.1| putative peptidoglycan-binding motif protein [Stenotrophomonas maltophilia K279a] Length = 593 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 19/176 (10%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + + + + ++V + + + + D +++ + ++A Sbjct: 300 GSQTLKEGSSGRDVLKLESNLVTLGYASAGGQQTLNPDRRFDATTRKAVEDFQRA-HNLD 358 Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG--DLDPSKGLSVAF-DAYVESAVK 143 + + G L + L+ L G D S + A+ Sbjct: 359 PVDGKAGPATLAAI-----DRDAR--ELQGNLAALGLTDAKGQAIGSDGYLGGGSRHAIN 411 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRI--------RQLQVNLMRIKKLLEQKM 191 FQ +HGL +G+ D+ T +A+ V R +Q R Sbjct: 412 AFQQQHGLPATGIADAETRQALANEVQQRAQAQGSTPEQQAAAEPARETVYPMSDP 467 >gi|187735022|ref|YP_001877134.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] gi|187425074|gb|ACD04353.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] Length = 209 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 47/202 (23%) Query: 149 HG--LDPSGMVDSSTLEAMNVPVDLRI-RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 HG L G +S+ EA R R + + RI+ + +++++ Sbjct: 29 HGKPLMKDGRY-ASSYEAFVADPQYRFTRDIWYHDERIR---QAGTRNSKIVIHLKDQRG 84 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 + +GK + V G+ +TP I +++D Y Sbjct: 85 VLLVDGKPAMNFPVCTGKSAHKTPRGKFSI-----------------------IQKDADY 121 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 + + D G V + + P G + + + +H Sbjct: 122 RSRSYGSVFDASGLCVNSDATSSSRVPPGGKFI----GAKMPL---WMRIHG--GIGLH- 171 Query: 326 TPEPILFNNVVRFE-TSGCVRV 346 V R + GC+RV Sbjct: 172 ------VGTVFRDANSHGCIRV 187 >gi|119489741|ref|ZP_01622499.1| putative hydrolase [Lyngbya sp. PCC 8106] gi|119454315|gb|EAW35465.1| putative hydrolase [Lyngbya sp. PCC 8106] Length = 435 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G + VQ L+ L G + F ++A+ FQ GL G+ + T Sbjct: 193 VGTTGSKVQDLQSLLKNRGF--DPGSIDGIFGNGTKTAILKFQKSKGLAEDGIANLKTWT 250 Query: 164 AM 165 A+ Sbjct: 251 AL 252 >gi|114769813|ref|ZP_01447423.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [alpha proteobacterium HTCC2255] gi|114549518|gb|EAU52400.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [alpha proteobacterium HTCC2255] gi|119713558|gb|ABL97610.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [uncultured marine bacterium EB0_39F01] Length = 212 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 41/150 (27%), Gaps = 47/150 (31%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E + V V D T + + I P W S+ L+ +P Sbjct: 97 EKQDIYKLYPVAVPSSDDLTRLGRTSITGKRVGPDWRPTPSM--------LKSNP----- 143 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTP 327 DW S PG N + S + Y +H T Sbjct: 144 ------------------DWPSYIG--------PGPGNPLGSHALYLS--WTYYRIHGTH 175 Query: 328 EPILFNNVVRFETSGCVRVRNII--DLDVW 355 + R ++GC+ + N +L Sbjct: 176 DNRKIG---RRSSNGCIGLYNAQIAELFDL 202 >gi|167647642|ref|YP_001685305.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Caulobacter sp. K31] gi|167350072|gb|ABZ72807.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Caulobacter sp. K31] Length = 243 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 9/84 (10%) Query: 89 LSRGGW---PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G W P P PL G V L+ L G + S +D + + V F Sbjct: 158 AGHGLWVEPPPSPGAPLGQGEEGTGVFALQAGLTRLGY---NCPPSGNYDEWTATVVAAF 214 Query: 146 QMRHGLDP--SGMVDSSTLEAMNV 167 Q RH L G+ D T + Sbjct: 215 Q-RHWLQTRFDGVADGETRARLVA 237 >gi|85705611|ref|ZP_01036709.1| hypothetical protein ROS217_02275 [Roseovarius sp. 217] gi|85670036|gb|EAQ24899.1| hypothetical protein ROS217_02275 [Roseovarius sp. 217] Length = 225 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 42/152 (27%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 V+ A L +E +R V + R P I R + P+W +++I Sbjct: 78 VDAVARYLYHIEESGTAMRYGVAIARGKLYEP-GTYTIKRKVRWPHWQPTQNMI------ 130 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 +DP+ + D +PG NA+ S + Y Sbjct: 131 --DRDPEIYA----EVADG-----------------------MEPGPKNALGSRALYLYV 161 Query: 318 RN-NTY--MHDTPEPILFNNVVRFETSGCVRV 346 + +TY +H TP P R +SGCVR+ Sbjct: 162 GDRDTYLRIHGTPHPKSIG--GRA-SSGCVRM 190 >gi|255552736|ref|XP_002517411.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223543422|gb|EEF44953.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] Length = 311 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G++ + L++ L G L S FD +E A+K +Q + L+ +G +DS T Sbjct: 50 GDNLKGIHDLKKYLENFGYLSYKNQSHSNDDDFDDLLEYALKTYQFNYHLNVTGFLDSET 109 Query: 162 LEAMNVP 168 + M +P Sbjct: 110 VTKMMMP 116 >gi|315505824|ref|YP_004084711.1| peptidoglycan-binding domain 1 protein [Micromonospora sp. L5] gi|315412443|gb|ADU10560.1| Peptidoglycan-binding domain 1 protein [Micromonospora sp. L5] Length = 377 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 13/105 (12%) Query: 69 IISKETIAQTEKAIAF------YQDILSRGGWPELPIRPLHLGNSSVSVQRLRER--LII 120 + T+A + A L+ W L L S V + + L Sbjct: 266 VFDAATVAAVQDWQARNGIPVDVDATLTAPTWETLAP---ELDQKSSGVPVVAAQFMLAS 322 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G + +D +AVK Q HGL P+G + ++T A+ Sbjct: 323 KGY--AEVTPTGEYDHATRTAVKDLQRLHGLPPNGKISTTTWCAL 365 Score = 40.0 bits (92), Expect = 0.78, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--PSGMVDSSTLE 163 V+ + L G + ++ FDA +AV+ +Q R+G+ + + T E Sbjct: 244 GPVVRVAQYLLTFRGY---TVPVTGVFDAATVAAVQDWQARNGIPVDVDATLTAPTWE 298 >gi|262173037|ref|ZP_06040714.1| VgrG protein [Vibrio mimicus MB-451] gi|261890395|gb|EEY36382.1| VgrG protein [Vibrio mimicus MB-451] Length = 991 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 26/191 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN+S V+ L++ LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNNSEEVRLLQKALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMNVPVDLRIRQL---QVNLMRIK---KLLEQKMGLRYVLVNIP 201 G+V TL A++ + + + Q+N K L + Y N Sbjct: 782 YSIGPVDGIVGKGTLLALDEALMDGWQVVPAPQINWADSKFGILLGSVESKNDYSAYNKT 841 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L++ + + V V + + + +++ + KD + L Sbjct: 842 KGGLKSFYRTNLDKMTIVEVLKKQESRDMFAAGRFQLIPDT---------LKDAINKLSI 892 Query: 262 DPQYLKDNNIH 272 D + D NI Sbjct: 893 DTSLVFDKNIQ 903 >gi|148378742|ref|YP_001253283.1| phage related N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 3502] gi|153932011|ref|YP_001383128.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|153934498|ref|YP_001386678.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] gi|148288226|emb|CAL82295.1| putative phage related N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 3502] gi|152928055|gb|ABS33555.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|152930412|gb|ABS35911.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] Length = 234 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 98 PIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L +V+ ++ +L G G+ F AVK FQ L G Sbjct: 162 PGYLLKYNPNRFDGNVKVIQSKLQNIGYSVGKFGVDGYFGDGTLLAVKCFQRDCNLMIDG 221 Query: 156 MVDSSTLEAM 165 +V +T + Sbjct: 222 IVGENTWNRI 231 >gi|262379111|ref|ZP_06072267.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262298568|gb|EEY86481.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 169 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TP+ + + GC+R+RN II+L + + Sbjct: 119 IYIHGTPDTEPMGIPM---SHGCIRMRNEEIIELFDLVPEQA 157 >gi|168181513|ref|ZP_02616177.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|182675396|gb|EDT87357.1| conserved hypothetical protein [Clostridium botulinum Bf] Length = 694 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 6/107 (5%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVS--VQRLRERLIISGDL 124 + S++T KA+ + I G W P G++S V L+ L ++G Sbjct: 167 VYSRDTNRALIKALQVEEGITPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNG-- 224 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 G F + +A+K FQ L G ++ V Sbjct: 225 IDPNGFDGLFGNGLSNAIKEFQSFCALPADGYAGKQVWASLLVSTGD 271 >gi|90418710|ref|ZP_01226621.1| conserved hypothetical protein with putative peptidoglycan-binding domain [Aurantimonas manganoxydans SI85-9A1] gi|90336790|gb|EAS50495.1| conserved hypothetical protein with putative peptidoglycan-binding domain [Aurantimonas manganoxydans SI85-9A1] Length = 1306 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ ++ LI G +A+K FQ GL G +D + + A+ Sbjct: 1247 AIRNIQAILIKLGY--EPGAPDGVVGQQTTAAIKAFQKEAGLTADGSIDETLIRAL 1300 >gi|259418604|ref|ZP_05742521.1| ErfK/YbiS/YcfS/YnhG [Silicibacter sp. TrichCH4B] gi|259344826|gb|EEW56680.1| ErfK/YbiS/YcfS/YnhG [Silicibacter sp. TrichCH4B] Length = 205 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 61/194 (31%), Gaps = 51/194 (26%) Query: 163 EAMNVPVDLRIRQLQV-----NLMRIKKLLE-QKMGLRYVLVNIPAASLEAVE-NGKVGL 215 +A V+ Q+ V + + + + +G+ +L +I + +L +G+ + Sbjct: 36 DAFPTTVEAIHDQVPVKRNVSSFQQQRWQDHFETLGVGCLLADIESRALHYWGGDGETYI 95 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 V + T +S+I R NP W ++ ++D Sbjct: 96 LFPSSVPMSEELTRRGYSKIVRKRENPSWTPTANMRERD--------------------- 134 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 P R + G N + + + +H T + Sbjct: 135 ------------------PTLPRRIEGGVPNNPLGTRALYLDWP-AYLVHGTHDTRKIG- 174 Query: 335 VVRFETSGCVRVRN 348 R +SGC+ + N Sbjct: 175 --RQSSSGCIGLYN 186 >gi|239905327|ref|YP_002952066.1| hypothetical protein DMR_06890 [Desulfovibrio magneticus RS-1] gi|239795191|dbj|BAH74180.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 380 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 10/99 (10%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V ++ RL G D ++K +Q GL G + L ++ Sbjct: 89 VADIQTRLAALGWYPGPA--DGKLDRMTRWSIKAYQAAEGLPQLGTATETLLAELSASPK 146 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 L + + +V P EA E Sbjct: 147 HAPADLA--------FPQFPKAEVHDIVLTPERLAEARE 177 >gi|308172494|ref|YP_003919199.1| hypothetical protein BAMF_0603 [Bacillus amyloliquefaciens DSM 7] gi|307605358|emb|CBI41729.1| Uncharacterized protein fadG [Bacillus amyloliquefaciens DSM 7] gi|328910596|gb|AEB62192.1| Uncharacterized protein fadG [Bacillus amyloliquefaciens LL3] Length = 761 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGW--PELPIR--PLHLGNSSVS-VQRLRERLIISGDL 124 S++T A+ + I G P + + +G++ + V+ L+ L + Sbjct: 173 YSRQTNEALIYALQVEEGIAEPTGTFGPATKSKCPTISMGSTKANFVKLLQYALYCNN-- 230 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 FD + +A+ FQ L G+ T ++ V Sbjct: 231 RNPGRFDGIFDENMRTALIDFQRFSALPADGVAGMQTWASLLVSKGD 277 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAM 165 + L+ L G G + + ++A+K FQ GL + G+ +A+ Sbjct: 81 QIMILQGALYCKGY--NPTGFTGTYGDGTKAAIKKFQTDAGLSNQDGIATPIIFKAL 135 >gi|256378112|ref|YP_003101772.1| peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] gi|255922415|gb|ACU37926.1| Peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] Length = 358 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 11/207 (5%) Query: 103 HLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G V + + L G + P F V A+K +Q + GL +G V+ Sbjct: 124 EPGVKGSDVAVVMDNLAALGYTVGIRPDDDSKAEFTPRVVEALKKWQRKVGLPDTGKVEP 183 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + + PV + Q ++L + + V++ + E G V + V Sbjct: 184 GQVLVLAGPVRVSSVTAQPGAAASEELFQVTPTGKVVVL-----QVSPTEAGAVSQGAKV 238 Query: 220 IVGRVDRQTPILH-SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 ++ R D + S + + I+ + +D L + + Sbjct: 239 LLTRPDGRDVPGTISSVGTAVSGEQGQGAGPRIEVVVTPDRDEDVADLDSAPVQVKITTE 298 Query: 279 KEVFVEEVDWNSPEP--PNFIFRQDPG 303 + V V + Q PG Sbjct: 299 RREGVLSVPLEALVALREGGYAVQSPG 325 >gi|254460698|ref|ZP_05074114.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacterales bacterium HTCC2083] gi|206677287|gb|EDZ41774.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacteraceae bacterium HTCC2083] Length = 221 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 44/169 (26%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R+ K+G + V+ A L ++ +R V + R + P I R Sbjct: 63 QRVDARSNLKVGDIH--VDAVARYLYHIDGQGTAMRYGVAIARGNLYEP-GTFSIRRKAK 119 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W ++I ++DP + + M Sbjct: 120 WPTWTPTAAMI--------KRDPHLYEQHAEGM--------------------------- 144 Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + G N + S + +R++ +H +P P R +SGCVR+ Sbjct: 145 NAGPSNPLGSRALYLYRGNRDSYLRIHGSPNPGSIG--GRA-SSGCVRM 190 >gi|295110292|emb|CBL24245.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus obeum A2-162] Length = 422 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPS 154 P L++G + V +++E+L + D P+ + ++V+ FQ GL + Sbjct: 338 PGYDLNIGATGEKVLQMQEQLNVIADAYPAIPKVNADGIYGEQTSASVRKFQNVFGLPET 397 Query: 155 GMVDSSTLEAMN 166 G+ D T + Sbjct: 398 GITDYPTWYKIQ 409 >gi|302867773|ref|YP_003836410.1| N-acetylmuramoyl-L-alanine amidase family 2 protein [Micromonospora aurantiaca ATCC 27029] gi|302570632|gb|ADL46834.1| N-acetylmuramoyl-L-alanine amidase family 2 [Micromonospora aurantiaca ATCC 27029] Length = 377 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 13/105 (12%) Query: 69 IISKETIAQTEKAIAF------YQDILSRGGWPELPIRPLHLGNSSVSVQRLRER--LII 120 + T+A + A L+ W L L S V + + L Sbjct: 266 VFDAATVAAVQDWQARNGIPVDVDATLTAPTWETLAP---ELDQKSSGVPVVAAQFMLAS 322 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G + +D +AVK Q HGL P+G + ++T A+ Sbjct: 323 KGY--AEVTPTGEYDHATRTAVKDLQRLHGLPPNGKISTTTWCAL 365 Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--PSGMVDSSTLE 163 V+ + L G + ++ FDA +AV+ +Q R+G+ + + T E Sbjct: 244 GPVVRVAQYLLTFRGY---TVPVTGVFDAATVAAVQDWQARNGIPVDVDATLTAPTWE 298 >gi|163867939|ref|YP_001609143.1| hypothetical protein Btr_0723 [Bartonella tribocorum CIP 105476] gi|161017590|emb|CAK01148.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 246 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 64/220 (29%), Gaps = 53/220 (24%) Query: 145 FQMRHGLDPS-----GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 FQ + P G V T + + + + R + + ++++ Sbjct: 30 FQQARYIPPEIQALYGPVTDETYQL----PAVDLATIDPKYWRQEVIYYTSYPPGTLVID 85 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L + LR + VG+ + R P W +++ ++ Sbjct: 86 TQECFLYLIGENGKALRYGIGVGKEG-LAFEGEGVVQRKRRWPNWAPTAAMMTREP---- 140 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSR 318 + PG N + + + F + Sbjct: 141 -------------------------------ERYGHLGKGMPPGPDNPLGARALYLFKNG 169 Query: 319 NNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 +T +H + E R +SGC+R+ ++IIDL Sbjct: 170 KDTLFRIHGSHESWSIG---RAISSGCIRLLNQDIIDLYD 206 >gi|148653252|ref|YP_001280345.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] gi|148572336|gb|ABQ94395.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] Length = 178 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPTWSRYHIEE 370 Y+H TP+ + + GCVR+RN + WL I + Sbjct: 133 IYIHGTPDTEPMGVPM---SHGCVRMRNEDVI--WLFDQVQEGMPVDIIAK 178 >gi|225427844|ref|XP_002276155.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 295 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ + +Q +++ L G L S+ S FD +ES++K FQ + L P+G +D+ Sbjct: 50 KKGDKTEGIQMVKKYLEHYGYLSSTHYSQMDSDDFDDTLESSLKAFQTFYHLKPTGSLDA 109 Query: 160 STLEAMNVP 168 T M+ P Sbjct: 110 PTATLMSKP 118 >gi|157691940|ref|YP_001486402.1| N-acetylmuramoyl-L-alanine amidase [Bacillus pumilus SAFR-032] gi|157680698|gb|ABV61842.1| N-acetylmuramoyl-L-alanine amidase [Bacillus pumilus SAFR-032] Length = 299 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 7/70 (10%) Query: 97 LPIRPLH---LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRH 149 LP + V+ +++ L +KG+ + +AV FQ+ + Sbjct: 218 LPDGVIKVTSPLTKGEHVRLVQQALAAVYFYPDKAAANKGIDGVYGEKTANAVARFQLVN 277 Query: 150 GLDPSGMVDS 159 GL G+ Sbjct: 278 GLPSDGVYGP 287 >gi|147776035|emb|CAN65266.1| hypothetical protein VITISV_040133 [Vitis vinifera] Length = 295 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ + +Q +++ L G L S+ S FD +ES++K FQ + L P+G +D+ Sbjct: 50 KKGDKTEGIQMVKKYLEHYGYLSSTHYSQMDSDDFDDTLESSLKAFQTFYHLKPTGSLDA 109 Query: 160 STLEAMNVP 168 T M+ P Sbjct: 110 PTATLMSKP 118 >gi|255527321|ref|ZP_05394199.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296184916|ref|ZP_06853327.1| ErfK/YbiS/YcfS/YnhG [Clostridium carboxidivorans P7] gi|255508968|gb|EET85330.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296050698|gb|EFG90121.1| ErfK/YbiS/YcfS/YnhG [Clostridium carboxidivorans P7] Length = 233 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%) Query: 308 MASTKIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRVRN 348 + F +H T P + GC+R++N Sbjct: 95 FGGYWMGFNVPWGKYGIHGTLFPGSIGWNS---SHGCIRMKN 133 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G + V +L+ L G + + ++ Y +S V FQ + L S + Sbjct: 164 RTLKPGMTGSDVYQLQFMLRTKGYY--NSKPNGIYNDYFKSVVHKFQKDNSLPISDTI 219 >gi|242062568|ref|XP_002452573.1| hypothetical protein SORBIDRAFT_04g028370 [Sorghum bicolor] gi|241932404|gb|EES05549.1| hypothetical protein SORBIDRAFT_04g028370 [Sorghum bicolor] Length = 368 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + L++ L G L P S AFD +ESA+ +Q GL+ +G +D+ST Sbjct: 54 GEERQGLAGLKDYLSHFGYLPPPPPSSPFSDAFDQDLESAIATYQRNFGLNATGALDAST 113 Query: 162 LEAMNVP 168 + M P Sbjct: 114 VSQMVSP 120 >gi|49474987|ref|YP_033028.1| peptidoglycan-binding protein [Bartonella henselae str. Houston-1] gi|49237792|emb|CAF26986.1| Peptidoglycan-binding protein [Bartonella henselae str. Houston-1] Length = 418 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L+ RL G + A+K FQ+RHGL +G L + Sbjct: 364 KELQSRLAALGYYKGE--MDGIIGTASRKALKAFQLRHGLTANGYPTPEVLSLLRK 417 >gi|254510550|ref|ZP_05122617.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacteraceae bacterium KLH11] gi|221534261|gb|EEE37249.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Rhodobacteraceae bacterium KLH11] Length = 199 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 53/189 (28%), Gaps = 46/189 (24%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLR-YVLVNIPAASLEAVENGK-VGLRSTVIVGRVDR 226 + +R+ + +LV+ + +L + + V V + Sbjct: 42 PEPEVRRNVSGFRALDWQPYFSNTKNGAILVDTVSRALHYWSDDQSVYKLYPSSVPLTEE 101 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 T + + R + P W S+ +++P++ Sbjct: 102 LTRRGRTSVIRKVEGPSWSPTPSMK--------KRNPEW--------------------- 132 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + + + + +H T + R ++GC+ + Sbjct: 133 ----------PDYIPPGPDNPLGTHALYLSWKY-YRIHGTHDTRKIG---RRSSNGCIGL 178 Query: 347 RNIIDLDVW 355 N D+ Sbjct: 179 FN-EDIAEL 186 >gi|218531762|ref|YP_002422578.1| peptidoglycan-binding protein [Methylobacterium chloromethanicum CM4] gi|218524065|gb|ACK84650.1| Peptidoglycan-binding domain 1 protein [Methylobacterium chloromethanicum CM4] Length = 233 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 47/178 (26%), Gaps = 8/178 (4%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST--------L 162 V ++ L+ G S G+ +A+ FQ GL G+ T + Sbjct: 4 VAEIQRALLARGYDLGSSGVDGDAGPRTIAALTAFQRLAGLVADGIAGPRTQAVLQKADI 63 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + + V + K V+ A ++ + + Sbjct: 64 SERREAPEKPGWLVLVEALNGLKEAPDVANNPQVVKLFADAGFPGIKTNSTAWCAAFVNA 123 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 +DR + F + V + + R + + + + + Sbjct: 124 VIDRAGHRGSRSLAARSFESWGVGLPAPALGAIATKKRGNSSWQGHTGLVVGANNDQV 181 >gi|326777537|ref|ZP_08236802.1| Peptidoglycan-binding domain 1 protein [Streptomyces cf. griseus XylebKG-1] gi|326657870|gb|EGE42716.1| Peptidoglycan-binding domain 1 protein [Streptomyces cf. griseus XylebKG-1] Length = 358 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R + +G+ V +L L G + + ESAVK +Q + Sbjct: 108 GPVPAFREMKVGDRGSDVLQLERNLRDLGY-GTGLYVDTEYGKDTESAVKQWQKHLNRET 166 Query: 154 SGMVDSS 160 +G V Sbjct: 167 TGRVGRG 173 >gi|320107055|ref|YP_004182645.1| peptidoglycan-binding domain 1 protein [Terriglobus saanensis SP1PR4] gi|319925576|gb|ADV82651.1| Peptidoglycan-binding domain 1 protein [Terriglobus saanensis SP1PR4] Length = 262 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 9/75 (12%) Query: 98 PIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR----HG-- 150 P + G+++ +V +++RL+I G + + A AV+ FQ R +G Sbjct: 7 PGTTIMAGSTNKEAVTAIQKRLVIVG--CGPVDVDGKYGAETAGAVEHFQARSVDSNGTP 64 Query: 151 LDPSGMVDSSTLEAM 165 L G V +T + Sbjct: 65 LLIDGKVGPTTWAVL 79 >gi|251795296|ref|YP_003010027.1| carboxyl-terminal protease [Paenibacillus sp. JDR-2] gi|247542922|gb|ACS99940.1| carboxyl-terminal protease [Paenibacillus sp. JDR-2] Length = 472 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +LP L G+ +V+ L+ L G G F+ A+ FQ + L+ + Sbjct: 379 QLPFGTELKTGSFGDNVKTLQLMLQELGYTPV--GDIGLFNGQTADALSRFQKDNKLEAT 436 Query: 155 GMVDSST 161 G + T Sbjct: 437 GTFNDMT 443 >gi|220922803|ref|YP_002498105.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219947410|gb|ACL57802.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 214 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY-SRNNTY-- 322 + + KG P+ + G N + + + Y + Sbjct: 106 FSWKGVATVGRKGVWPDWGPTATMVSLNPDLPRLRKGGLDNPLGARALYLYQGGRDILFR 165 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +H T EP +SGCVR+ N D+ Sbjct: 166 IHGTSEPWSIGE---QLSSGCVRMLN-EDIVDL 194 >gi|320175620|gb|EFW50712.1| L,D-transpeptidase YcfS [Shigella dysenteriae CDC 74-1112] Length = 137 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 308 MASTKIEFYSRNNTYM-HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M I + Y+ H T F +R +SGC+R+R+ D+ + TP Sbjct: 1 MGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKVN 56 Query: 367 HIEEVVK 373 I +K Sbjct: 57 IINTPIK 63 >gi|260431727|ref|ZP_05785698.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415555|gb|EEX08814.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 199 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 5/97 (5%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L + K + P + PG N + + + + +H Sbjct: 102 LTRRGRTSVIRKVEGPSWSPTPSMKKRNPEWPDYIPPGPDNPLGTHALYLSWKY-YRIHG 160 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 T + R ++GC+ + N D+ Sbjct: 161 THDTRKIG---RRSSNGCIGLFN-EDIAELFAMAKVG 193 >gi|182436925|ref|YP_001824644.1| hypothetical protein SGR_3132 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465441|dbj|BAG19961.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 358 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R + +G+ V +L L G + + ESAVK +Q + Sbjct: 108 GPVPAFREMKVGDRGSDVLQLERNLRDLGY-GTGLYVDTEYGKDTESAVKQWQKHLNRET 166 Query: 154 SGMVDSS 160 +G V Sbjct: 167 TGRVGRG 173 >gi|89070990|ref|ZP_01158213.1| hypothetical protein OG2516_12501 [Oceanicola granulosus HTCC2516] gi|89043453|gb|EAR49668.1| hypothetical protein OG2516_12501 [Oceanicola granulosus HTCC2516] Length = 185 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 9/67 (13%) Query: 294 PNFIFRQDPG-KINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN- 348 + G N + + + R+ Y +H TP+P R +SGC+R+ N Sbjct: 111 GPYRSGLPGGHPRNPLGARALYLYRGGRDTLYRIHGTPQPWTLG---RSFSSGCLRLANE 167 Query: 349 -IIDLDV 354 I DL Sbjct: 168 HIEDLYD 174 >gi|224097718|ref|XP_002311052.1| predicted protein [Populus trichocarpa] gi|222850872|gb|EEE88419.1| predicted protein [Populus trichocarpa] Length = 309 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 113 RLRERLIISGDLD--------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 L+ L G L + FD +ESA+K +Q H L+ +G +D+ST+ Sbjct: 52 ELKRYLEKFGYLKYGHQGKKGHNHANDDEFDDLLESAIKAYQQNHHLNVTGSLDNSTVHE 111 Query: 165 MNVP 168 M P Sbjct: 112 MMQP 115 >gi|224097706|ref|XP_002311048.1| predicted protein [Populus trichocarpa] gi|222850868|gb|EEE88415.1| predicted protein [Populus trichocarpa] Length = 259 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 113 RLRERLIISGDLD--------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 L+ L G L + FD +ESA+K +Q H L+ +G +D+ST+ Sbjct: 52 ELKRYLEKFGYLKYGHQGKKGHNHANDDEFDDLLESAIKAYQQNHHLNVTGSLDNSTVHE 111 Query: 165 MNVP 168 M P Sbjct: 112 MMQP 115 >gi|167032693|ref|YP_001667924.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida GB-1] gi|166859181|gb|ABY97588.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida GB-1] Length = 179 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 Y+H TP+ + GC+R+RN L L + P IE+ Sbjct: 118 IYLHGTPDTEPMGI---ALSHGCIRLRNTDLLS--LFERVPAHCPVRIEQA 163 >gi|196249379|ref|ZP_03148077.1| carboxyl-terminal protease [Geobacillus sp. G11MC16] gi|196211136|gb|EDY05897.1| carboxyl-terminal protease [Geobacillus sp. G11MC16] Length = 481 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +P + + ++ L G F E+AVK FQ + L +G +D Sbjct: 392 KPFTYDMNDEQIANAQKMLKGLGF--DPGRTDGYFSKETETAVKAFQKANKLPATGRIDE 449 Query: 160 STLEAMNVPVDLRIR 174 +T + + IR Sbjct: 450 TTANVLQTKIMEAIR 464 >gi|138896677|ref|YP_001127130.1| putative protease [Geobacillus thermodenitrificans NG80-2] gi|134268190|gb|ABO68385.1| Putative protease [Geobacillus thermodenitrificans NG80-2] Length = 472 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +P + + ++ L G F E+AVK FQ + L +G +D Sbjct: 383 KPFTYDMNDEQIANAQKMLKGLGF--DPGRTDGYFSKETETAVKAFQKANKLPATGRIDE 440 Query: 160 STLEAMNVPVDLRIR 174 +T + + IR Sbjct: 441 TTANVLQTKIMEAIR 455 >gi|255320554|ref|ZP_05361734.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter radioresistens SK82] gi|255302404|gb|EET81641.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter radioresistens SK82] Length = 169 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TP+ + + GC+R+RN II+L + + Sbjct: 119 IYIHGTPDTEPMGIPM---SHGCIRMRNEEIIELFDLIPEQA 157 >gi|224097714|ref|XP_002311050.1| predicted protein [Populus trichocarpa] gi|222850870|gb|EEE88417.1| predicted protein [Populus trichocarpa] Length = 309 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 113 RLRERLIISGDLD--------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 L+ L G L + FD +ESA+K +Q H L+ +G +D+ST+ Sbjct: 52 ELKRYLEKFGYLKYGHQGKKGHNHANDDEFDDLLESAIKAYQQNHHLNVTGSLDNSTVHE 111 Query: 165 MNVP 168 M P Sbjct: 112 MMQP 115 >gi|170720847|ref|YP_001748535.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida W619] gi|169758850|gb|ACA72166.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida W619] Length = 173 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 Y+H TP+ + GC+R+RN L L + P IEE Sbjct: 118 IYLHGTPDTEPLGIP---LSHGCIRLRNTDLL--GLFERVPAHCPVRIEEA 163 >gi|188588622|ref|YP_001919517.1| spore cortex-lytic enzyme [Clostridium botulinum E3 str. Alaska E43] gi|188498903|gb|ACD52039.1| spore cortex-lytic enzyme [Clostridium botulinum E3 str. Alaska E43] Length = 443 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+ V+ ++ +L I L P F AVK+FQ L + Sbjct: 330 PDYDLTVGSVGEPVKTIQNQLNRISKNYPLIPKVAEDGIFGQTTAEAVKVFQGIFNLPQT 389 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 390 GVVDYATWYKIS 401 >gi|161170310|gb|ABX59280.1| uncharacterized protein conserved in bacteria [uncultured marine bacterium EB000_55B11] gi|297183838|gb|ADI19961.1| hypothetical protein [uncultured marine bacterium EB000_55B11] Length = 212 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 57/204 (27%), Gaps = 16/204 (7%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T A + ++ + + +S + E V ++ Sbjct: 6 TRRAFTATAMSSLAVGSRSIAQEGWNPDLNNPALGFDTRQDQSSRLSGEANSVRRNASAF 65 Query: 221 VGRVDRQTPILHSRINRIMFNPY------WVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 GR + + +++ I+ + W + I + + + L I Sbjct: 66 RGRSNWKXYFSNTKNGVILVDTQSRALHFWSEKQDIYK--LYPVAVPSSXDLTRLGRTSI 123 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFN 333 K P++ PG N + S + Y +H T + Sbjct: 124 TGKRVGPDWRPTPSMLKSNPDWPSYIGPGPGNPLGSHALYLS--WTYYRIHGTHDNRKIG 181 Query: 334 NVVRFETSGCVRVRNII--DLDVW 355 R ++GC+ + N +L Sbjct: 182 ---RRSSNGCIGLYNAQIAELFDL 202 >gi|260429562|ref|ZP_05783539.1| ErfK/YbiS/YcfS/YnhG family protein [Citreicella sp. SE45] gi|260420185|gb|EEX13438.1| ErfK/YbiS/YcfS/YnhG family protein [Citreicella sp. SE45] Length = 196 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 6/84 (7%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MH 324 L + K P + PG N + + + Y +H Sbjct: 99 LTRRGRTQVVLKDPSPDWRPTPSMKERNPEWPDYVGPGPDNPLGTRAMHLS--WTYYRIH 156 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T + R ++GC+ + N Sbjct: 157 GTHDTRKIG---RRSSNGCIGLYN 177 >gi|121605872|ref|YP_983201.1| peptidoglycan-binding domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120594841|gb|ABM38280.1| Peptidoglycan-binding domain 1 protein [Polaromonas naphthalenivorans CJ2] Length = 589 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 4/90 (4%) Query: 94 WPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPS--KGLSVAFDAYVESAVKLFQMRH 149 W P L ++ +QRL +L + DA + + V+ FQ Sbjct: 498 WRPPPGYTAGLQGASTGPVIQRLASQLALLDGAPAPLASTAPPVLDAALRARVRAFQRAQ 557 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 GL+ G T ++ +LQ N Sbjct: 558 GLEADGQPGPMTFMQIDRATHADEPRLQTN 587 >gi|167517209|ref|XP_001742945.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778044|gb|EDQ91659.1| predicted protein [Monosiga brevicollis MX1] Length = 1518 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 77/265 (29%), Gaps = 39/265 (14%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + ++ +P R L LG++ V L+ + + + S FD ++AV Q Sbjct: 22 VEAQTSFPPPFDRVLALGDAGQDVFILQNLIRNNNQSIVLRNASAVFDNATQAAVVALQQ 81 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 GL +G+ D++TL + L ++ G L Sbjct: 82 AWGLSATGVADATTLATV--------------LTQLSWDRYVDDGRPASARGYAYKILVP 127 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 V + + + T + ++ +N D D Sbjct: 128 VHRNRSLETTAE--LQAANGTVLYRFQVRAHGYNSC-------QCDDDWPNFHND----- 173 Query: 268 DNNIHMIDEKGKEV------FVEEVDWNSPEPPNFIFRQD--PGKINAMASTKIEFYSRN 319 + ++M G V + + + + + + NA + R+ Sbjct: 174 NPGLNMFTSNGNTVTGLIMADLNSPEPDPKSYGPYPINRAVQGLEGNA---AWLVPNIRD 230 Query: 320 NTYMHDTPEPILFNNVVRFETSGCV 344 +H P + GC+ Sbjct: 231 GLLLHTGEWPNWSPGEPMPNSEGCM 255 >gi|114766730|ref|ZP_01445668.1| ErfK/YbiS/YcfS/YnhG family protein [Pelagibaca bermudensis HTCC2601] gi|114541049|gb|EAU44105.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius sp. HTCC2601] Length = 185 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 50/187 (26%), Gaps = 48/187 (25%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP 229 R + + + +G ++ + + +L +G V + T Sbjct: 33 ARRNISSFAMQDWRDHFDA-LGKACIVCDTTSRALHFWNGDGSDYRIYPTSVPLTEELTK 91 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +++I R P W S +++ DW Sbjct: 92 RGYTKIVRKKVGPSWTPTPSQLERYP-------------------------------DWK 120 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN- 348 PG N + + + +H T + R + GC+ + N Sbjct: 121 PIG---------PGPDNPLGTHAMYLGWPAYI-IHGTHDTRKIG---RKSSDGCIGLYNE 167 Query: 349 -IIDLDV 354 I +L Sbjct: 168 KIEELFA 174 >gi|251779729|ref|ZP_04822649.1| spore cortex-lytic enzyme [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084044|gb|EES49934.1| spore cortex-lytic enzyme [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 443 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+ V+ ++ +L I L P F AVK+FQ L + Sbjct: 330 PDYDLTVGSVGEPVKTIQNQLNRISKNYPLIPKVAEDGIFGQTTAEAVKVFQGIFNLPQT 389 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 390 GVVDYATWYKIS 401 >gi|332711185|ref|ZP_08431118.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349999|gb|EGJ29606.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 114 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 11/75 (14%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---------L 151 L G + +V+ L++ LI +D S L F + E AV+ FQ + L Sbjct: 38 VLKKGTAGEAVRFLQQFLIC--YIDYSVLLDGQFGSQTERAVRDFQSYYNSLQKSNPDYL 95 Query: 152 DPSGMVDSSTLEAMN 166 G+V T A+ Sbjct: 96 IVDGIVGKETYRAIG 110 >gi|269217207|ref|ZP_06161061.1| penicillin-resistant DD-carboxypeptidase [Slackia exigua ATCC 700122] gi|269129344|gb|EEZ60429.1| penicillin-resistant DD-carboxypeptidase [Slackia exigua ATCC 700122] Length = 247 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 51/204 (25%), Gaps = 45/204 (22%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE--- 163 V+ L+ L G G+ F AY E A++ FQ+ GL G+ T + Sbjct: 29 QGEDVEDLQTALGALGF--SCGGVDGTFGAYTEGALRKFQVNMGLVSDGIAGVKTYDTLK 86 Query: 164 ----------------------------------AMNVPVDLRIRQLQVNLMRIKKLLEQ 189 +I NL + Sbjct: 87 HLHGAWADKPTLETSSYMGFARAADVLEHHAVCLFGTGSFTRKIASYLSNLALATNPRSK 146 Query: 190 KMGLRYVLVNIPAASLEAVE-----NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + +LV +P AS+ G V G + + I+ Sbjct: 147 MLSAETLLV-VPDASMLLTHIVLEGEGMEEGVPRVSCGDAESLAVRVSGAIDVARKKAEE 205 Query: 245 VIPRSIIQKDMMALLRQDPQYLKD 268 P I + + +D Sbjct: 206 GAPLRIAVEVSVPDAAEDSPEFDK 229 >gi|330831743|ref|XP_003291916.1| hypothetical protein DICPUDRAFT_156569 [Dictyostelium purpureum] gi|325077860|gb|EGC31545.1| hypothetical protein DICPUDRAFT_156569 [Dictyostelium purpureum] Length = 943 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 22/149 (14%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG----------LDPSGMVDSS 160 V ++ L L + +D +A+K FQ+ L G +D Sbjct: 410 VMEIQAALSHLNYLPLLTKIDGMYDQKTINALKAFQVDSNKHREGSGLLLLPTEGYLDQI 469 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T + + I +L L + L + N+ +++ + + Sbjct: 470 TFDEL----QEEILKLASKLESLGYTLPDNPTKNFKEFNV------IIKSFQE--TYRIY 517 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + + ++N + P S Sbjct: 518 PNAPGKNILLFIEKMNLKVSQTILPPPSS 546 >gi|222151317|ref|YP_002560473.1| hypothetical protein MCCL_1070 [Macrococcus caseolyticus JCSC5402] gi|222120442|dbj|BAH17777.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 469 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 2/85 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L L S V+ + L G + FD AV+ FQM + L G++ Sbjct: 379 ADEVLTLNVKSTKVKSMEMGLKALGF--DPGKVDNTFDESTLYAVQSFQMENNLTVDGIM 436 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMR 182 T + + +I V L R Sbjct: 437 TGKTTDKFMTQLAKKIENDDVQLKR 461 >gi|168187475|ref|ZP_02622110.1| lysin [Clostridium botulinum C str. Eklund] gi|169294640|gb|EDS76773.1| lysin [Clostridium botulinum C str. Eklund] Length = 257 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ +++ L G+ + + AV FQ +GL G+V ++T + + Sbjct: 198 QYGDDVKLIQKYLNKYGNYCN---IDGWYGFNTRKAVMNFQNTNGLSVDGIVGNNTWDVL 254 Query: 166 NV 167 Sbjct: 255 RR 256 >gi|253580852|ref|ZP_04858115.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847922|gb|EES75889.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 422 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G S V++++E+L I P + +++V++FQ GLD + Sbjct: 338 PGYDLDIGASGNKVRQIQEQLNTIAEAYPAVPVVTADGIYGPETQNSVRIFQSIFGLDQT 397 Query: 155 GMVDSSTLEAMN 166 G+VD T + Sbjct: 398 GIVDYPTWYKIQ 409 >gi|301056644|ref|YP_003794855.1| carboxyl-terminal protease [Bacillus anthracis CI] gi|300378813|gb|ADK07717.1| carboxyl-terminal protease [Bacillus cereus biovar anthracis str. CI] Length = 478 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIRS 462 >gi|254724391|ref|ZP_05186175.1| carboxyl-terminal protease [Bacillus anthracis str. A1055] Length = 465 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 376 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 433 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 434 KTAEAIQTKIIEKIRS 449 >gi|228936468|ref|ZP_04099266.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823300|gb|EEM69134.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 494 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|228948900|ref|ZP_04111173.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810656|gb|EEM57004.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 494 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229158746|ref|ZP_04286804.1| Carboxyl-terminal protease [Bacillus cereus ATCC 4342] gi|228624730|gb|EEK81499.1| Carboxyl-terminal protease [Bacillus cereus ATCC 4342] Length = 494 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229187391|ref|ZP_04314534.1| Carboxyl-terminal protease [Bacillus cereus BGSC 6E1] gi|228596095|gb|EEK53772.1| Carboxyl-terminal protease [Bacillus cereus BGSC 6E1] Length = 494 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229141909|ref|ZP_04270435.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST26] gi|229199298|ref|ZP_04325965.1| Carboxyl-terminal protease [Bacillus cereus m1293] gi|228584158|gb|EEK42309.1| Carboxyl-terminal protease [Bacillus cereus m1293] gi|228641524|gb|EEK97829.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST26] Length = 494 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|222098636|ref|YP_002532694.1| carboxyl-terminal protease [Bacillus cereus Q1] gi|221242695|gb|ACM15405.1| carboxyl-terminal protease [Bacillus cereus Q1] Length = 469 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIRS 453 >gi|192289092|ref|YP_001989697.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris TIE-1] gi|192282841|gb|ACE99221.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris TIE-1] Length = 464 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 6/125 (4%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ +++RL G + + F E A+ F+ +GL P+ VD +TL A+ Sbjct: 298 PLVEFVQQRLRALGYYEVGN-IDGDFAGRTEDALVTFKRHNGLPPTTDVDDATLRAL-AD 355 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 R ++ R + + + + + L A G V+ G + Sbjct: 356 ASPR----EIGDARARATPKDVSKIVPAVRQAGRSKLLAWLLGAPSAAVAVLQGAAANVS 411 Query: 229 PILHS 233 ++ Sbjct: 412 SVMSE 416 >gi|206976835|ref|ZP_03237738.1| carboxyl- protease [Bacillus cereus H3081.97] gi|217962662|ref|YP_002341236.1| carboxyl-terminal protease [Bacillus cereus AH187] gi|206744970|gb|EDZ56374.1| carboxyl- protease [Bacillus cereus H3081.97] gi|217066361|gb|ACJ80611.1| carboxyl-terminal protease [Bacillus cereus AH187] gi|324329123|gb|ADY24383.1| carboxyl-terminal protease [Bacillus thuringiensis serovar finitimus YBT-020] Length = 478 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIRS 462 >gi|118480221|ref|YP_897372.1| carboxyl-terminal protease [Bacillus thuringiensis str. Al Hakam] gi|118419446|gb|ABK87865.1| carboxyl-terminal protease [Bacillus thuringiensis str. Al Hakam] Length = 495 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 406 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 463 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 464 KTAEAIQTKIIEKIRS 479 >gi|49188018|ref|YP_031271.1| carboxyl-terminal protease [Bacillus anthracis str. Sterne] gi|49480386|ref|YP_039171.1| carboxyl-terminal protease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869894|ref|ZP_02214551.1| carboxyl-terminal protease [Bacillus anthracis str. A0488] gi|167635276|ref|ZP_02393591.1| carboxyl-terminal protease [Bacillus anthracis str. A0442] gi|167640531|ref|ZP_02398794.1| carboxyl-terminal protease [Bacillus anthracis str. A0193] gi|170687936|ref|ZP_02879149.1| carboxyl-terminal protease [Bacillus anthracis str. A0465] gi|170707750|ref|ZP_02898201.1| carboxyl-terminal protease [Bacillus anthracis str. A0389] gi|177653015|ref|ZP_02935342.1| carboxyl-terminal protease [Bacillus anthracis str. A0174] gi|190567669|ref|ZP_03020581.1| carboxyl-terminal protease [Bacillus anthracis Tsiankovskii-I] gi|196032931|ref|ZP_03100344.1| carboxyl-terminal protease [Bacillus cereus W] gi|196039446|ref|ZP_03106751.1| carboxyl-terminal protease [Bacillus cereus NVH0597-99] gi|196045752|ref|ZP_03112982.1| carboxyl-terminal protease [Bacillus cereus 03BB108] gi|218906357|ref|YP_002454191.1| carboxyl-terminal protease [Bacillus cereus AH820] gi|225867145|ref|YP_002752523.1| carboxyl-terminal protease [Bacillus cereus 03BB102] gi|227817942|ref|YP_002817951.1| carboxyl-terminal protease [Bacillus anthracis str. CDC 684] gi|229602027|ref|YP_002869401.1| carboxyl-terminal protease [Bacillus anthracis str. A0248] gi|254686392|ref|ZP_05150251.1| carboxyl-terminal protease [Bacillus anthracis str. CNEVA-9066] gi|254735597|ref|ZP_05193304.1| carboxyl-terminal protease [Bacillus anthracis str. Western North America USA6153] gi|254744315|ref|ZP_05201995.1| carboxyl-terminal protease [Bacillus anthracis str. Kruger B] gi|254755613|ref|ZP_05207646.1| carboxyl-terminal protease [Bacillus anthracis str. Vollum] gi|254757068|ref|ZP_05209096.1| carboxyl-terminal protease [Bacillus anthracis str. Australia 94] gi|49181945|gb|AAT57321.1| carboxyl-terminal protease [Bacillus anthracis str. Sterne] gi|49331942|gb|AAT62588.1| carboxyl-terminal protease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714217|gb|EDR19737.1| carboxyl-terminal protease [Bacillus anthracis str. A0488] gi|167511574|gb|EDR86957.1| carboxyl-terminal protease [Bacillus anthracis str. A0193] gi|167529319|gb|EDR92071.1| carboxyl-terminal protease [Bacillus anthracis str. A0442] gi|170127307|gb|EDS96183.1| carboxyl-terminal protease [Bacillus anthracis str. A0389] gi|170668045|gb|EDT18795.1| carboxyl-terminal protease [Bacillus anthracis str. A0465] gi|172081790|gb|EDT66860.1| carboxyl-terminal protease [Bacillus anthracis str. A0174] gi|190561085|gb|EDV15058.1| carboxyl-terminal protease [Bacillus anthracis Tsiankovskii-I] gi|195994360|gb|EDX58315.1| carboxyl-terminal protease [Bacillus cereus W] gi|196023583|gb|EDX62260.1| carboxyl-terminal protease [Bacillus cereus 03BB108] gi|196029606|gb|EDX68208.1| carboxyl-terminal protease [Bacillus cereus NVH0597-99] gi|218535514|gb|ACK87912.1| carboxyl-terminal protease [Bacillus cereus AH820] gi|225788534|gb|ACO28751.1| carboxyl-terminal protease [Bacillus cereus 03BB102] gi|227003396|gb|ACP13139.1| carboxyl-terminal protease [Bacillus anthracis str. CDC 684] gi|229266435|gb|ACQ48072.1| carboxyl-terminal protease [Bacillus anthracis str. A0248] Length = 478 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIRS 462 >gi|52140383|ref|YP_086447.1| carboxyl-terminal protease [Bacillus cereus E33L] gi|51973852|gb|AAU15402.1| carboxyl-terminal protease [Bacillus cereus E33L] Length = 469 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIRS 453 >gi|42784334|ref|NP_981581.1| carboxyl-terminal protease [Bacillus cereus ATCC 10987] gi|42740265|gb|AAS44189.1| carboxyl-terminal protease [Bacillus cereus ATCC 10987] Length = 469 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIRS 453 >gi|30265208|ref|NP_847585.1| carboxyl-terminal protease [Bacillus anthracis str. Ames] gi|47530727|ref|YP_022076.1| carboxyl-terminal protease [Bacillus anthracis str. 'Ames Ancestor'] gi|30259885|gb|AAP29071.1| carboxyl-terminal protease [Bacillus anthracis str. Ames] gi|47505875|gb|AAT34551.1| carboxyl-terminal protease [Bacillus anthracis str. 'Ames Ancestor'] Length = 469 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIRS 453 >gi|65317154|ref|ZP_00390113.1| COG0793: Periplasmic protease [Bacillus anthracis str. A2012] gi|228917786|ref|ZP_04081326.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930182|ref|ZP_04093191.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229094276|ref|ZP_04225352.1| Carboxyl-terminal protease [Bacillus cereus Rock3-42] gi|229124688|ref|ZP_04253869.1| Carboxyl-terminal protease [Bacillus cereus 95/8201] gi|228658783|gb|EEL14442.1| Carboxyl-terminal protease [Bacillus cereus 95/8201] gi|228689129|gb|EEL42952.1| Carboxyl-terminal protease [Bacillus cereus Rock3-42] gi|228829467|gb|EEM75095.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841891|gb|EEM86998.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 494 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|150376334|ref|YP_001312930.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150030881|gb|ABR62997.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 220 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + ++ R ++V+ L +R V +GR + Sbjct: 40 PAIPYEKIDPRFYRQMVANPTGERPGVLVVDTANHFLYLTYEAGQAMRYGVGLGRQGFE- 98 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W P ++ + L P + + + Sbjct: 99 WAGRGVIQYKRQWPRWTPPDEMVARQ--PELE--PYSIANGGME---------------- 138 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVR 345 PG N + + + F + + Y +H +PE +SGCVR Sbjct: 139 -------------PGLTNPLGARALYIFQNGVDTLYRIHGSPEWWTIGKS---VSSGCVR 182 Query: 346 V--RNIIDLDVWLLKDTP 361 + ++++DL + TP Sbjct: 183 MINQDVVDLYNRVQNGTP 200 >gi|257438480|ref|ZP_05614235.1| penicillin-resistant DD-carboxypeptidase [Faecalibacterium prausnitzii A2-165] gi|257199059|gb|EEU97343.1| penicillin-resistant DD-carboxypeptidase [Faecalibacterium prausnitzii A2-165] Length = 230 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 Y G P L G+ V L++ L G + F E A++ Sbjct: 137 RYGTPACSGTTAGYP--TLRRGSRGCYVMILQDALSTLGY-QTGSRIDGLFGTRTEEALR 193 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 +Q R L G+ S+ + + Sbjct: 194 GYQRRTSLTVDGVCGCSSWKKITT 217 >gi|226951673|ref|ZP_03822137.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. ATCC 27244] gi|294651354|ref|ZP_06728673.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter haemolyticus ATCC 19194] gi|226837589|gb|EEH69972.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. ATCC 27244] gi|292822756|gb|EFF81640.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter haemolyticus ATCC 19194] Length = 176 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 5/41 (12%) Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + Y+H TPE + + GC+R++N +I+L + Sbjct: 115 KRYIYIHGTPETEPMGIPM---SHGCIRMKNDEVIELFELI 152 >gi|229175852|ref|ZP_04303350.1| Carboxyl-terminal protease [Bacillus cereus MM3] gi|228607585|gb|EEK64909.1| Carboxyl-terminal protease [Bacillus cereus MM3] Length = 494 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|316936246|ref|YP_004111228.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315603960|gb|ADU46495.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 215 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 44/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + QL +R V+V+ L V G LR V VG+ + Sbjct: 53 AAVEAEQLDPAYVRQLVDYRTAEPPGTVVVDPRNRFLYLVLEGGKALRYGVGVGKAGLE- 111 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + R P+W R++I ++ + + Sbjct: 112 FTGTAEVGRKAEWPHWTPTRNMIAREPERYGKW------ARGME---------------- 149 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 G+ N + + ++ + +H T EP +SGC+R Sbjct: 150 -------------GGETNPLGPRALYLYKNGKDTLFRIHGTTEPETIGK---AVSSGCIR 193 Query: 346 V--RNIIDLDVWLLKDTP 361 + +++IDL + K Sbjct: 194 MLNQDVIDLYARVPKGAK 211 >gi|56478508|ref|YP_160097.1| hypothetical protein ebA5408 [Aromatoleum aromaticum EbN1] gi|56314551|emb|CAI09196.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 162 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 PG N + R Y+H TP+ + GC+R+RN II+L + Sbjct: 103 PG-RNRLGDVD---SMRRYIYIHGTPDGEPMGVPR---SHGCIRMRNRDIIELFELVPVG 155 Query: 360 T 360 T Sbjct: 156 T 156 >gi|328472890|gb|EGF43738.1| hypothetical protein VP10329_19450 [Vibrio parahaemolyticus 10329] Length = 244 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 8/66 (12%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G V V+ L+ L+ F E++VK FQ ++GL G+V + Sbjct: 179 TVRNGARGVDVRELQ--------LNLGLNADGIFGNGTEASVKAFQNKYGLSNDGIVGKN 230 Query: 161 TLEAMN 166 T + + Sbjct: 231 TWKKIE 236 >gi|149912610|ref|ZP_01901144.1| hypothetical protein RAZWK3B_01440 [Roseobacter sp. AzwK-3b] gi|149813016|gb|EDM72842.1| hypothetical protein RAZWK3B_01440 [Roseobacter sp. AzwK-3b] Length = 204 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 29/137 (21%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIP--IISKETIAQTEKAIA--FYQDILSR 91 L ++ + + + A + + P + + E + +A A + + + Sbjct: 88 LGTVVARLCAGNRDAQVEAVTAS---ALATLAPLAVSAPEEAVELRRAEAAVRMRPSVLQ 144 Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G ++ERLI +L P + + A+ FQ GL Sbjct: 145 G---------------------VQERLITR-ELLPEESADGVYGEQTAKALARFQEDTGL 182 Query: 152 DPSGMVDSSTLEAMNVP 168 +P+G+ D+ T+ + V Sbjct: 183 EPTGLPDAWTVFVLQVS 199 >gi|84394160|ref|ZP_00992892.1| putative general secretion pathway protein A [Vibrio splendidus 12B01] gi|84375219|gb|EAP92134.1| putative general secretion pathway protein A [Vibrio splendidus 12B01] Length = 556 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + L G ++ L ++S L S FD ++ ++ FQM G+ Sbjct: 468 WKQPLRDTLKEGYQGEAIALLDL--LLSEVLGEDVSGSDVFDYELKMKIEAFQMWQGMSV 525 Query: 154 SGMVDSSTLEAMNVPVDLRIRQL 176 G+ TL + R+ QL Sbjct: 526 DGIAGKRTLARL-----QRLAQL 543 >gi|186682808|ref|YP_001866004.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186465260|gb|ACC81061.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 223 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ ++ L + + + + V+ FQ GL G V T Sbjct: 165 LTRGSRGQLVRDVQTAL-------GNLRVDGIYGQETVNQVRSFQASKGLLVDGTVGPET 217 Query: 162 LEAMNV 167 A+ + Sbjct: 218 RAALGI 223 >gi|302876664|ref|YP_003845297.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307687339|ref|ZP_07629785.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302579521|gb|ADL53533.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 444 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ V+ ++ L I + P +S +D + V+ FQ L P+ Sbjct: 329 PGYTLGIGSTGQPVRTVQTFLNRIATNYPALPKVAVSGNYDVNTAAMVRKFQEVFNLQPT 388 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 G+VD ST A++ + ++ R Sbjct: 389 GVVDYSTWYAISRIYVAVTKIAELREER 416 >gi|240139156|ref|YP_002963631.1| hypothetical protein MexAM1_META1p2578 [Methylobacterium extorquens AM1] gi|240009128|gb|ACS40354.1| conserved hypothetical protein precursor, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens AM1] Length = 290 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 20/82 (24%) Query: 288 WNSPEPPNFIFRQDP------------GKINAMASTKIEF--YSRNNTY-MHDTPEPILF 332 W P + R+DP G N + + + ++ Y +H T EP Sbjct: 128 WPRWTPTPDMIRRDPKRYEPWAGGMAGGDRNPLGARALYLFKDGKDTLYRIHGTTEPWSI 187 Query: 333 NNVVRFETSGCVRV--RNIIDL 352 +SGC+R+ +++IDL Sbjct: 188 GE---AVSSGCIRMLNQDVIDL 206 >gi|291451766|ref|ZP_06591156.1| predicted protein [Streptomyces albus J1074] gi|291354715|gb|EFE81617.1| predicted protein [Streptomyces albus J1074] Length = 301 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 15/41 (36%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + V+ AV+ FQ + G+V T + Sbjct: 261 PGAVDGLYGPVVQEAVRRFQAARRIPVDGVVGPDTWGELRR 301 >gi|168209801|ref|ZP_02635426.1| spore cortex-lytic enzyme SleC [Clostridium perfringens B str. ATCC 3626] gi|170712125|gb|EDT24307.1| spore cortex-lytic enzyme SleC [Clostridium perfringens B str. ATCC 3626] Length = 438 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQM 147 +G P L +G S V+ ++E+L L P + + +V+ FQ Sbjct: 322 QGSPRSFPGYTLGIGASGQPVRVIQEQLNAISKAYPLIPKVAVDGKYGQKTRDSVRTFQK 381 Query: 148 RHGLDPSGMVDSSTL-EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 L +G VD +T + +V V + + + K + RY V Sbjct: 382 VFNLPQTGEVDYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTIMDRYENVPK 435 >gi|148379399|ref|YP_001253940.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 3502] gi|153931814|ref|YP_001383776.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|153936376|ref|YP_001387326.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] gi|148288883|emb|CAL82968.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 3502] gi|152927858|gb|ABS33358.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|152932290|gb|ABS37789.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] Length = 275 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 9/99 (9%) Query: 68 PIISKETIAQTEKAI-AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 P SK + + +SR G+ P G + +++ LI G Sbjct: 180 PSTSKPVQTNKKHTLINQLYAEMSRQGFNTFPAC--RQGARGNITKIIQQMLINIGYTVG 237 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S F AVK FQ L +V T +A+ Sbjct: 238 S------FGNSTVMAVKSFQRDCNLSADVLVGKETWKAL 270 >gi|110801016|ref|YP_697249.1| spore cortex-lytic enzyme SleC [Clostridium perfringens ATCC 13124] gi|110675663|gb|ABG84650.1| spore cortex-lytic enzyme SleC [Clostridium perfringens ATCC 13124] Length = 438 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQM 147 +G P L +G S V+ ++E+L L P + + +V+ FQ Sbjct: 322 QGSPRSFPGYTLGIGASGQPVRVIQEQLNAISKAYPLIPKVAVDGKYGQKTRDSVRTFQK 381 Query: 148 RHGLDPSGMVDSSTL-EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 L +G VD +T + +V V + + + K + RY V Sbjct: 382 VFNLPQTGEVDYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTIMDRYENVPK 435 >gi|282934018|ref|ZP_06339304.1| peptidoglycan binding domain protein [Lactobacillus jensenii 208-1] gi|281301914|gb|EFA94172.1| peptidoglycan binding domain protein [Lactobacillus jensenii 208-1] Length = 311 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 10/100 (10%) Query: 74 TIAQTEKAIAFYQDILSRG-GWPELPIRPL-------HLGNSSVSVQRLRERLIISGDLD 125 TI + + I + G G+ L G S V+ ++ G Sbjct: 35 TIYSLREGLQHELGISALGEGFGSSTKAALSNIINKIRPGYSGNIVKLIKGAFWCKG--I 92 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S ++ + + +AVK Q G+ G++ + A+ Sbjct: 93 NPTDFSASYGSELTNAVKTLQSDAGITADGILTVQLMAAL 132 >gi|239831423|ref|ZP_04679752.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] gi|239823690|gb|EEQ95258.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum intermedium LMG 3301] Length = 238 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V +R V +GR Sbjct: 74 PAIPIQKMDKRFLRQVVQDPTGELPGTIVIDTANRFCYLVLENGQAMRYGVGIGREGFA- 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 133 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 164 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 165 SAKNGGM-----APGLKNPLGARALYIFQDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 216 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + P Sbjct: 217 FLNQDIIDLYDRVPAKAP 234 >gi|256851783|ref|ZP_05557171.1| YbfG [Lactobacillus jensenii 27-2-CHN] gi|260661955|ref|ZP_05862865.1| YbfG [Lactobacillus jensenii 115-3-CHN] gi|297205404|ref|ZP_06922800.1| YbfG like protein [Lactobacillus jensenii JV-V16] gi|256615741|gb|EEU20930.1| YbfG [Lactobacillus jensenii 27-2-CHN] gi|260547424|gb|EEX23404.1| YbfG [Lactobacillus jensenii 115-3-CHN] gi|297149982|gb|EFH30279.1| YbfG like protein [Lactobacillus jensenii JV-V16] Length = 709 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 10/100 (10%) Query: 74 TIAQTEKAIAFYQDILSRG-GWPELPIRPL-------HLGNSSVSVQRLRERLIISGDLD 125 TI + + I + G G+ L G S V+ ++ G Sbjct: 35 TIYSLREGLQHELGISALGEGFGSSTKAALSNIINKIRPGYSGNIVKLIKGAFWCKG--I 92 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S ++ + + +AVK Q G+ G++ + A+ Sbjct: 93 NPTDFSASYGSELTNAVKTLQSDAGITADGILTVQLMAAL 132 >gi|182624290|ref|ZP_02952075.1| spore cortex-lytic enzyme SleC [Clostridium perfringens D str. JGS1721] gi|177910508|gb|EDT72881.1| spore cortex-lytic enzyme SleC [Clostridium perfringens D str. JGS1721] Length = 438 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQM 147 +G P L +G S V+ ++E+L L P + + +V+ FQ Sbjct: 322 QGSPRSFPGYTLGIGASGQPVRVIQEQLNAISKAYPLIPKVAVDGKYGQKTRDSVRTFQK 381 Query: 148 RHGLDPSGMVDSSTL-EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 L +G VD +T + +V V + + + K + RY V Sbjct: 382 VFNLPQTGEVDYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTIMDRYENVPK 435 >gi|168217325|ref|ZP_02642950.1| spore cortex-lytic enzyme SleC [Clostridium perfringens NCTC 8239] gi|182380585|gb|EDT78064.1| spore cortex-lytic enzyme SleC [Clostridium perfringens NCTC 8239] Length = 438 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQM 147 +G P L +G S V+ ++E+L L P + + +V+ FQ Sbjct: 322 QGSPRSFPGYTLGIGASGQPVRVIQEQLNAISKAYPLIPKVAVDGKYGQKTRDSVRTFQK 381 Query: 148 RHGLDPSGMVDSSTL-EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 L +G VD +T + +V V + + + K + RY V Sbjct: 382 VFNLPQTGEVDYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTIMDRYENVPK 435 >gi|228984111|ref|ZP_04144297.1| peptidoglycan binding domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775639|gb|EEM24019.1| peptidoglycan binding domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 739 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 15/163 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 I L++ + D + + + N + + G + T Sbjct: 139 IFKAFLTMDAYRLTPGG-DAKVRQIQQDLNNKYYKTSGVQPTDG------HYQRGTNKAL 191 Query: 79 EKAIAFYQDILSRGGWPEL-PIRP-----LHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + I + + P L +G+S V + L +G S S Sbjct: 192 VFGLQTEMGIAAGSQTGSIGPATKNGLPILKVGSSGRFVTLFQYALYFNGH--DSGSFST 249 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 ++A VES VK FQ L G+ + ST + V R+ Sbjct: 250 TYNANVESTVKKFQGFTLLPVDGVANKSTWLSALVSTGDPDRK 292 >gi|332711166|ref|ZP_08431099.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349980|gb|EGJ29587.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 108 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---------L 151 L G + +V+ L++ LI + S F + E AV+ FQ + L Sbjct: 32 VLKKGTAGEAVRFLQQLLIC--YMGYSLVFDGQFGSQTEQAVRDFQSYYNSLYKSNPDYL 89 Query: 152 DPSGMVDSSTLEAMN 166 G+V T A+ Sbjct: 90 IVDGIVGKETYRAIG 104 >gi|239979911|ref|ZP_04702435.1| hypothetical protein SalbJ_10752 [Streptomyces albus J1074] Length = 270 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 15/41 (36%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + V+ AV+ FQ + G+V T + Sbjct: 230 PGAVDGLYGPVVQEAVRRFQAARRIPVDGVVGPDTWGELRR 270 >gi|152977293|ref|YP_001376810.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026045|gb|ABS23815.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cytotoxicus NVH 391-98] Length = 156 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 13/99 (13%) Query: 269 NNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMASTKIEFYS----RNN 320 N + K + N + + + N + + Sbjct: 52 RNFTVATGKSTTPTPTGSFIIVNKIKNRPYYTGHIKGGDPRNPLGDRWLGLNMAGTWGTT 111 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 +H T T GC+R+ N WL + Sbjct: 112 YAIHGTNNNQAIGKST---TLGCIRMYNND--IHWLFEQ 145 >gi|229522795|ref|ZP_04412209.1| VgrG protein [Vibrio cholerae TM 11079-80] gi|229340012|gb|EEO05020.1| VgrG protein [Vibrio cholerae TM 11079-80] Length = 1050 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 22/133 (16%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQ-----TEKAIAFYQDILSRGGWPELPIRPLHL 104 + +D P+ ++T + K + + R Sbjct: 674 ASLPTMIPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQ------ASAYRQ 727 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-----------LDP 153 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPSYSIGAV 787 Query: 154 SGMVDSSTLEAMN 166 G+V TL A++ Sbjct: 788 DGIVGKGTLLALD 800 >gi|153010025|ref|YP_001371240.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] gi|151561913|gb|ABS15411.1| ErfK/YbiS/YcfS/YnhG family protein [Ochrobactrum anthropi ATCC 49188] Length = 238 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 42/198 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + I+++ +R ++++ V +R V +GR Sbjct: 74 PAIPIQKMDKRFLRQVVQDPTGELPGTLVIDTANRFCYLVLENGQAMRYGVGIGREGFA- 132 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I P W P ++ + E V + Sbjct: 133 WSGRAVIQYKRQWPRWTPPDEMVARQ----------------------------PELVQY 164 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ PG N + + + ++ Y +H PE +SGCVR Sbjct: 165 SARNGGM-----APGLKNPLGARALYIFQDGKDTLYRLHGNPEWWSIGK---AVSSGCVR 216 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + +P Sbjct: 217 FLNQDIIDLYDRVPAKSP 234 >gi|83956109|ref|ZP_00964591.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. NAS-14.1] gi|83839675|gb|EAP78854.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. NAS-14.1] Length = 217 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 62/205 (30%), Gaps = 48/205 (23%) Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGK 212 +G + T E + +R + ++ + +L +I + +++ E+ Sbjct: 48 TGTAIAQTTEPFS-SPSVRRNISSFSTSNWREHF-DNLEHGAILCDIDSRAVQYWSEDES 105 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V V + T ++ + R + P W S+ ++P++ Sbjct: 106 VYKLYPSSVPLTEELTKRGNTHVIRKVEGPSWRPTPSMKI--------RNPEW------- 150 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 PG N + + + + +H T + Sbjct: 151 ------------------------PDYFPPGPDNPLGTHALYLSWQY-YRVHGTGDTRKI 185 Query: 333 NNVVRFETSGCVRVRN--IIDLDVW 355 R ++GC+ + N I +L Sbjct: 186 G---RQSSNGCIGLYNEHIKELFAL 207 >gi|90420723|ref|ZP_01228629.1| putative peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90335014|gb|EAS48775.1| putative peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 284 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 8/109 (7%) Query: 64 DSDIPIISKETIA-QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 + P + + A+ + +L G P L G V+RL+ L+ G Sbjct: 178 RYNGPAYRRNRYDEKIAAALHKARSLL--GTDPA--TGELRRGARGDHVRRLQGSLVAHG 233 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + F E+A+ FQ HGL S D++T+ + V Sbjct: 234 ---HRLVVDGIFGPGTEAALTSFQAAHGLPVSAAADAATMARLGVSAKP 279 >gi|330502556|ref|YP_004379425.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina NK-01] gi|328916842|gb|AEB57673.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina NK-01] Length = 175 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 9/70 (12%) Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N M R Y+H TP+ + GC+R+RN L L P Sbjct: 103 PG-RNRMGEVD---TFRRYIYLHGTPDTEPMGEP---LSHGCIRLRNTDMLA--LFDRVP 153 Query: 362 TWSRYHIEEV 371 + I E Sbjct: 154 LNCKVRIGEA 163 >gi|311695152|gb|ADP98025.1| ErfK/YbiS/YcfS/YnhG family protein [marine bacterium HP15] Length = 164 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 Y+H TP+ + GCVR+RN DL + T Sbjct: 121 IYIHGTPDSEPMGVP---LSHGCVRMRNADIIDLFDRVRPGT 159 >gi|295104691|emb|CBL02235.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii SL3/3] Length = 230 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L++ L G + F A E A++ +Q R L G+ Sbjct: 152 TLRRGSRGCYVMILQDALSTLGY-QTGSRIDGIFGARTEQALRGYQKRTSLRVDGVCGCD 210 Query: 161 TLEAMNV 167 + + ++ Sbjct: 211 SWKKIST 217 >gi|282892109|ref|ZP_06300584.1| hypothetical protein pah_c207o039 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498004|gb|EFB40348.1| hypothetical protein pah_c207o039 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 206 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 26/183 (14%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR------ 226 L + L+Q + ++V++ + L + K+ + Sbjct: 22 ANSLPKQFLDKMAELKQPLTRHVIVVDVTSQKLFLYNDHKIVTSYPISTSSKGTGQESNS 81 Query: 227 -QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 +TP+ RI + P + I + R++ + + K ++V + Sbjct: 82 YKTPLGAHRIAEKI---GQNAPINAIFVE-----RKNTGKIWS---PLPKGKREKVDLVL 130 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 E F Q GK + F + Y+H T L + GC+R Sbjct: 131 TRILWLEGLEKGFNQGIGKG---GKSVDSF--QRYIYIHGTNAEDLIGTP---ASKGCIR 182 Query: 346 VRN 348 ++N Sbjct: 183 MKN 185 >gi|297545248|ref|YP_003677550.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843023|gb|ADH61539.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 420 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ L +G + + F + V FQ L P G+V T Sbjct: 45 GTYGTDVKELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDGIVGPKTYAV 102 Query: 165 MNV 167 + Sbjct: 103 LET 105 >gi|167465780|ref|ZP_02330869.1| hypothetical protein Plarl_24988 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 488 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 21/131 (16%) Query: 247 PRSIIQKDMMALLRQDPQY-------LKDNNIHMIDEKGKEVFVE-EVDWNSPEPPNFIF 298 P + + +D + + + G + V + P+ F Sbjct: 321 PAKWLATSVKPEHAEDQLFEEPLRIVVDRRAYRLAVISGNTIIRTFPVGLGGEKTPDGEF 380 Query: 299 ------RQDPGKINA-MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 R GK N S + +H T EP + GC+R+ ++ Sbjct: 381 TITEKVRNPNGKSNGEFGSRGMTLSDT-LYAIHGTNEPDSIGQDE---SKGCIRMGKEDV 436 Query: 350 IDLDVWLLKDT 360 +L + +T Sbjct: 437 EELFDLVPLET 447 >gi|160943095|ref|ZP_02090332.1| hypothetical protein FAEPRAM212_00574 [Faecalibacterium prausnitzii M21/2] gi|158445564|gb|EDP22567.1| hypothetical protein FAEPRAM212_00574 [Faecalibacterium prausnitzii M21/2] Length = 230 Score = 47.7 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L++ L G + F A E A++ +Q R L G+ Sbjct: 152 TLRRGSRGCYVMILQDALSTLGY-QTGSRIDGIFGARTEQALRGYQKRTSLRVDGVCGCD 210 Query: 161 TLEAMNV 167 + + ++ Sbjct: 211 SWKKIST 217 >gi|332978479|gb|EGK15191.1| glutamate 5-kinase [Psychrobacter sp. 1501(2011)] Length = 100 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 6/47 (12%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPTWSRY 366 Y+H TP+ + GCVR+RN L WL Sbjct: 55 IYIHGTPDSEPMGIP---LSHGCVRMRNEDLL--WLFDQVDEGVPVE 96 >gi|149204351|ref|ZP_01881318.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. TM1035] gi|149142236|gb|EDM30283.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. TM1035] Length = 201 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 47/197 (23%) Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVE-NGK 212 G+ + T+E + +R+ + + +LV+I + ++ + Sbjct: 30 GVDGADTVELERGLEEETVRRNISGFRMLDWRPYFSNLNNGAILVDIDSRAVHFWSADQS 89 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V V D T + + + + P W S+ L+++P++ Sbjct: 90 VYKLYPSSVPLTDDLTRRGRTSVVQKVEGPSWRPTPSM--------LKRNPEW------- 134 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPIL 331 PG N + + + Y +H T + Sbjct: 135 ------------------------PAFVPPGPDNPLGTHALYLS--WTYYRIHGTHDTRK 168 Query: 332 FNNVVRFETSGCVRVRN 348 R ++GCV + N Sbjct: 169 IG---RRSSNGCVGLYN 182 >gi|314936435|ref|ZP_07843782.1| carboxyl- protease [Staphylococcus hominis subsp. hominis C80] gi|313655054|gb|EFS18799.1| carboxyl- protease [Staphylococcus hominis subsp. hominis C80] Length = 489 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + +G+++ +V+ ++ L G + S FD + + +KLFQ + L +G Sbjct: 401 SDKTYSVGDNNKNVKSIKIGLDALGYY--NGDESNQFDNQLANTIKLFQSNNQLSETGKF 458 Query: 158 DSST 161 D+ T Sbjct: 459 DTKT 462 >gi|228476033|ref|ZP_04060741.1| carboxy- processing proteinase [Staphylococcus hominis SK119] gi|228269856|gb|EEK11336.1| carboxy- processing proteinase [Staphylococcus hominis SK119] Length = 489 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + +G+++ +V+ ++ L G + S FD + + +KLFQ + L +G Sbjct: 401 SDKTYSVGDNNKNVKSIKIGLDALGYY--NGDESNQFDNQLANTIKLFQSNNQLSETGKF 458 Query: 158 DSST 161 D+ T Sbjct: 459 DTKT 462 >gi|294675987|ref|YP_003576602.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter capsulatus SB 1003] gi|294474807|gb|ADE84195.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter capsulatus SB 1003] Length = 282 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 57/202 (28%), Gaps = 14/202 (6%) Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPA-ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 N ++ + + +PA + E + D ++R+ Sbjct: 30 AANAPALRGVPPEYQARPDGERVVPAVNPVYLTERNRRRWVEYAGPEGKDTIVIDPYARV 89 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + P + I R + + D Sbjct: 90 LYHVVEPGKAMRFGIAVG---KAGRGFSGAAVVGRKEIYPSWQPTARMVRADPALY--GP 144 Query: 296 FIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 D G N + + + R+ Y +H T +P ++GC+R+ N D+ Sbjct: 145 LAGGLDGGLDNPLGARALYLYRNGRDTYYRIHGTMDPSSIGK---ATSAGCIRLFN-QDI 200 Query: 353 DVWLLKDTPTWSRYHIEEVVKT 374 + + P +R + + ++ Sbjct: 201 ID-MFDEAPLGTRVKVRSLAES 221 >gi|311696248|gb|ADP99121.1| peptidoglycan binding domain protein [marine bacterium HP15] Length = 416 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L++ L G + SA++ FQ + L G S L A+ +P Sbjct: 356 ANIINLQKALQQRGYEPGNP--DGIMGPATRSAIRQFQAANNLVADGYPGESVLAALEIP 413 Query: 169 VDL 171 Sbjct: 414 AGQ 416 >gi|193212428|ref|YP_001998381.1| peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] gi|193085905|gb|ACF11181.1| Peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] Length = 616 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 4/69 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--PSGMVDS 159 L G+ V ++++L G + F A+ FQ G+V Sbjct: 234 LRFGSQGELVHVIQQKLSARGFY--EGKIDSDFGLRTLQALLDFQTAEFGPSEDDGIVGP 291 Query: 160 STLEAMNVP 168 T A+ + Sbjct: 292 QTASALAID 300 >gi|169830630|ref|YP_001716612.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637474|gb|ACA58980.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Desulforudis audaxviator MP104C] Length = 266 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 48/186 (25%), Gaps = 45/186 (24%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + K G +++N A L + G++ + +V G+ TP + + Sbjct: 125 LAVYPRPKSGGDRIIINKSANRLYFYQGGELAVIYSVATGKRPEYTPEGTFTVVNKVS-- 182 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 + + W P R+ Sbjct: 183 -------------------------------LPGDNDSDPRFGLRWLGLAVPCEKDRRRE 211 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 A K +H T EP + GCVR+RN D+ T Sbjct: 212 NDPRAPGGIK--------YGIHGTNEPDSIGT---HASGGCVRLRN-EDIVELFELVTVG 259 Query: 363 WSRYHI 368 + I Sbjct: 260 TTVDII 265 >gi|154685104|ref|YP_001420265.1| YkuG [Bacillus amyloliquefaciens FZB42] gi|154350955|gb|ABS73034.1| YkuG [Bacillus amyloliquefaciens FZB42] Length = 761 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGW--PELPIR--PLHLGNSSVS-VQRLRERLIISGDL 124 S++T A+ + I G P + + +G++ + V+ L+ L + Sbjct: 173 YSRQTNEALIYALQVEEGIAEPTGTFGPATKSKCPTISMGSTKANFVKLLQYALYCNN-- 230 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 FD + +A+ FQ L G+ T ++ V Sbjct: 231 RNPGRFDGIFDENMRTALINFQKFSALPADGVAGMQTWASLLVSKGD 277 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAM 165 + L+ L G G + + ++A+K FQ GL + G+ +A+ Sbjct: 81 QIMILQGALYCKGY--NPTGFTGTYGDGTKAAIKKFQTDAGLSNQDGIATPIIFKAL 135 >gi|50084010|ref|YP_045520.1| hypothetical protein ACIAD0795 [Acinetobacter sp. ADP1] gi|49529986|emb|CAG67698.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 167 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYH 367 Y+H TP+ + + GC+R+RN +I+L + + + Sbjct: 117 IYIHGTPDTEPMGIAM---SHGCIRMRNRDVIELFDLVPEYALVYLSEQ 162 >gi|84503182|ref|ZP_01001267.1| hypothetical protein OB2597_16507 [Oceanicola batsensis HTCC2597] gi|114762597|ref|ZP_01442041.1| hypothetical protein 1100011001314_R2601_07093 [Pelagibaca bermudensis HTCC2601] gi|84388423|gb|EAQ01372.1| hypothetical protein OB2597_16507 [Oceanicola batsensis HTCC2597] gi|114544852|gb|EAU47857.1| hypothetical protein R2601_07093 [Roseovarius sp. HTCC2601] Length = 90 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 9/66 (13%) Query: 295 NFIFRQDPGKINAMASTKIEFYSRNN--TY--MHDTPEPILFNNVVRFETSGCVRVRN-- 348 + G N + + + Y TY +H T P + ++GC R+ N Sbjct: 11 KYKDGLKGGPNNPLGARALYLYDAEGRDTYLRIHGTNAPETIGS---AVSNGCARLTNEH 67 Query: 349 IIDLDV 354 + DL Sbjct: 68 VKDLYE 73 >gi|319898490|ref|YP_004158583.1| hypothetical protein BARCL_0314 [Bartonella clarridgeiae 73] gi|319402454|emb|CBI75995.1| conserved exported protein of unknown function [Bartonella clarridgeiae 73] Length = 229 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 10/107 (9%) Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ--DPGKINAMASTKIEF--Y 316 ++ I + + Q PG N + + Sbjct: 110 KEGLAFTGVGIIQYKRRWPSWAPTKKMMEREPERYGHLAQGMPPGPENPLGARAFYLFKD 169 Query: 317 SRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 ++ + +H + E R +SGC+R+ ++IIDL + + Sbjct: 170 GKDTLFRIHGSHEAWSIG---RAISSGCIRLLNQDIIDLYNRVPDGS 213 >gi|56697068|ref|YP_167431.1| ErfK/YbiS/YcfS/YnhG family protein [Ruegeria pomeroyi DSS-3] gi|56678805|gb|AAV95471.1| ErfK/YbiS/YcfS/YnhG family protein [Ruegeria pomeroyi DSS-3] Length = 216 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 46/171 (26%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +G+ +L +I + ++ V + T ++ + R NP W Sbjct: 80 ETLGVGCLLADISSRAVHYWGADGSYKLYPSSVPMTEELTRRGYTEVVRKTVNPSWTPTA 139 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK-INA 307 S+ ++D P R + G+ N Sbjct: 140 SMRERD---------------------------------------PTLPVRMEGGEVGNP 160 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + + + +H T + R +SGC+ + N + +L + Sbjct: 161 LGTRAMYLTWP-AYLVHGTHDTRKIG---RQSSSGCIGLYNQHVEELYELV 207 >gi|120554854|ref|YP_959205.1| ErfK/YbiS/YcfS/YnhG family protein [Marinobacter aquaeolei VT8] gi|120324703|gb|ABM19018.1| ErfK/YbiS/YcfS/YnhG family protein [Marinobacter aquaeolei VT8] Length = 166 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 Y+H TP+ + GC+R+RN I++L + TP Sbjct: 123 IYIHGTPDSEPMGV---ARSHGCIRMRNTDIVELFDRVPAGTP 162 >gi|322384184|ref|ZP_08057894.1| murein transglycosylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151076|gb|EFX44393.1| murein transglycosylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 500 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 21/131 (16%) Query: 247 PRSIIQKDMMALLRQDPQY-------LKDNNIHMIDEKGKEVFVE-EVDWNSPEPPNFIF 298 P + + +D + + + G + V + P+ F Sbjct: 333 PAKWLATSVKPEHAEDQLFEEPLRIVVDRRAYRLAVISGNTIIRTFPVGLGGEKTPDGEF 392 Query: 299 ------RQDPGKINA-MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 R GK N S + +H T EP + GC+R+ ++ Sbjct: 393 TITEKVRNPNGKSNGEFGSRGMTLSDT-LYAIHGTNEPDSIGQDE---SKGCIRMGKEDV 448 Query: 350 IDLDVWLLKDT 360 +L + +T Sbjct: 449 EELFDLVPLET 459 >gi|322806537|emb|CBZ04106.1| lysozyme [Clostridium botulinum H04402 065] Length = 340 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 ++++ L+ G + G+ +A+K FQ L +G VD+ T + + + Sbjct: 204 QIQKMLVTIGYPIGNSGIDGIIGNGTITAIKAFQKDCNLTVTGNVDTKTWNKLEQEYNKK 263 Query: 173 IRQLQVNLMRIK 184 + N Sbjct: 264 LGIKPNNKEEFD 275 >gi|323136345|ref|ZP_08071427.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322398419|gb|EFY00939.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 187 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 44/176 (25%), Gaps = 44/176 (25%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + ++++ L V V + V V + ++ + ++ Sbjct: 41 ARNMVAFSPDVQPGTIVISAHQRRLFYVVGPGVAISYPVAVPKRGKE-WSGVTSVDGKYV 99 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W P ++ + P Sbjct: 100 NPDWTPPAAV---------------------------------------KADHPELPNLI 120 Query: 301 DPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G N M + +H T + + + GC+R+ N D+ Sbjct: 121 PGGSPRNPMGVAALTLDRGE-VAIHGTTSKMRASIGT-AASYGCIRMLN-EDVADL 173 >gi|295401143|ref|ZP_06811116.1| carboxyl-terminal protease [Geobacillus thermoglucosidasius C56-YS93] gi|294976736|gb|EFG52341.1| carboxyl-terminal protease [Geobacillus thermoglucosidasius C56-YS93] Length = 480 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V+ ++ L G F E+AVK FQ + L P+G +D Sbjct: 391 KALSFDMNNEQVKNAQQMLKGIGF--DPGRTDGYFSKETEAAVKAFQKANKLPPTGKIDK 448 Query: 160 STLEAMNVPVDLRIR 174 +T + + V IR Sbjct: 449 NTADVLQAKVMDAIR 463 >gi|27381722|ref|NP_773251.1| amidase [Bradyrhizobium japonicum USDA 110] gi|27354891|dbj|BAC51876.1| amidase [Bradyrhizobium japonicum USDA 110] Length = 286 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P + L LG S V L++ L G L+ +DA V FQ Sbjct: 195 GHWVTPTPVVRGESLMLGTISDEVLSLQQALARYGY---GVPLTGKYDAATMEVVTAFQR 251 Query: 148 RHG-LDPSGMVDSSTLE 163 G+ D STL Sbjct: 252 HFRPARLDGVADHSTLS 268 >gi|294501799|ref|YP_003565499.1| C-terminal processing peptidase [Bacillus megaterium QM B1551] gi|295707148|ref|YP_003600223.1| C-terminal processing peptidase [Bacillus megaterium DSM 319] gi|294351736|gb|ADE72065.1| C-terminal processing peptidase [Bacillus megaterium QM B1551] gi|294804807|gb|ADF41873.1| C-terminal processing peptidase [Bacillus megaterium DSM 319] Length = 479 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 2/80 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ +PL + V+ + L G F E+AV FQ + +G Sbjct: 386 QVDKKPLTRDMTGDQVKNAQVMLKGLGF--EPGRTDGYFSKETETAVTAFQKANKQKATG 443 Query: 156 MVDSSTLEAMNVPVDLRIRQ 175 +D T + + +I+ Sbjct: 444 EIDEDTAALLQTKLLEKIKS 463 >gi|226943571|ref|YP_002798644.1| ErfK/YbiS/YcfS/YnhG family protein [Azotobacter vinelandii DJ] gi|226718498|gb|ACO77669.1| ErfK/YbiS/YcfS/YnhG family protein [Azotobacter vinelandii DJ] Length = 172 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 Y+H TP+ + GCVR+RN L L P R IEE Sbjct: 116 IYLHGTPDSEPMGVPR---SHGCVRLRNADLL--ELYPRVPLHCRVRIEEA 161 >gi|253701653|ref|YP_003022842.1| peptidoglycan-binding protein [Geobacter sp. M21] gi|251776503|gb|ACT19084.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. M21] Length = 536 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G V+ L+ L G D ++ F ++AV FQ R L G + TL Sbjct: 454 KAGEKEAGVRLLQGLLKQVGCYD--GAVNGEFTDKTQAAVAEFQRREQLTADGKLGGQTL 511 >gi|162454953|ref|YP_001617320.1| N-acetylmuramoyl-L-alanine amidase [Sorangium cellulosum 'So ce 56'] gi|161165535|emb|CAN96840.1| N-acetylmuramoyl-L-alanine amidase [Sorangium cellulosum 'So ce 56'] Length = 217 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 14/84 (16%) Query: 94 WPELPIR----------PLHLGNSSV-SVQR-LRERLIISGDLDPSKGLSVAFDAYVESA 141 WP+ P L LG+ V ++ RL G + +A Sbjct: 129 WPDTPGNETARAGGVTWALKLGHLDPIEVPSGVQGRLKNLGYFSREVDGKD--GPELANA 186 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 V +Q GL P+G++D +T + Sbjct: 187 VAWYQSASGLTPTGVLDDATRAKL 210 >gi|229526247|ref|ZP_04415651.1| VgrG protein [Vibrio cholerae bv. albensis VL426] gi|229336405|gb|EEO01423.1| VgrG protein [Vibrio cholerae bv. albensis VL426] Length = 1017 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMN 166 G+V TL A++ Sbjct: 782 YSIGAVDGIVGKGTLLALD 800 >gi|147671421|ref|YP_001214855.1| vgrG protein [Vibrio cholerae O395] gi|262167069|ref|ZP_06034785.1| VgrG protein [Vibrio cholerae RC27] gi|146313804|gb|ABQ18344.1| vgrG protein [Vibrio cholerae O395] gi|227014751|gb|ACP10960.1| vgrG protein [Vibrio cholerae O395] gi|262024524|gb|EEY43209.1| VgrG protein [Vibrio cholerae RC27] Length = 1017 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMN 166 G+V TL A++ Sbjct: 782 YSIGAVDGIVGKGTLLALD 800 >gi|254225886|ref|ZP_04919489.1| vgrG protein [Vibrio cholerae V51] gi|125621613|gb|EAZ49944.1| vgrG protein [Vibrio cholerae V51] Length = 1017 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMN 166 G+V TL A++ Sbjct: 782 YSIGAVDGIVGKGTLLALD 800 >gi|121727012|ref|ZP_01680208.1| vgrG protein [Vibrio cholerae V52] gi|121630646|gb|EAX63035.1| vgrG protein [Vibrio cholerae V52] Length = 1017 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMN 166 G+V TL A++ Sbjct: 782 YSIGAVDGIVGKGTLLALD 800 >gi|15600894|ref|NP_232524.1| vgrG protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586876|ref|ZP_01676657.1| vgrG protein [Vibrio cholerae 2740-80] gi|153817727|ref|ZP_01970394.1| vgrG protein [Vibrio cholerae NCTC 8457] gi|153821639|ref|ZP_01974306.1| vgrG protein [Vibrio cholerae B33] gi|227811749|ref|YP_002811759.1| vgrG protein [Vibrio cholerae M66-2] gi|229506709|ref|ZP_04396218.1| VgrG protein [Vibrio cholerae BX 330286] gi|229510497|ref|ZP_04399977.1| VgrG protein [Vibrio cholerae B33] gi|229517372|ref|ZP_04406817.1| VgrG protein [Vibrio cholerae RC9] gi|229605182|ref|YP_002875886.1| VgrG protein [Vibrio cholerae MJ-1236] gi|254850390|ref|ZP_05239740.1| vgrG protein [Vibrio cholerae MO10] gi|255746058|ref|ZP_05420005.1| VgrG protein [Vibrio cholera CIRS 101] gi|262162104|ref|ZP_06031119.1| VgrG protein [Vibrio cholerae INDRE 91/1] gi|298499985|ref|ZP_07009791.1| vgrG protein [Vibrio cholerae MAK 757] gi|9657510|gb|AAF96037.1| vgrG protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548919|gb|EAX58960.1| vgrG protein [Vibrio cholerae 2740-80] gi|126511769|gb|EAZ74363.1| vgrG protein [Vibrio cholerae NCTC 8457] gi|126520836|gb|EAZ78059.1| vgrG protein [Vibrio cholerae B33] gi|227010891|gb|ACP07102.1| vgrG protein [Vibrio cholerae M66-2] gi|229345408|gb|EEO10381.1| VgrG protein [Vibrio cholerae RC9] gi|229352942|gb|EEO17882.1| VgrG protein [Vibrio cholerae B33] gi|229357060|gb|EEO21978.1| VgrG protein [Vibrio cholerae BX 330286] gi|229371668|gb|ACQ62090.1| VgrG protein [Vibrio cholerae MJ-1236] gi|254846095|gb|EET24509.1| vgrG protein [Vibrio cholerae MO10] gi|255735812|gb|EET91210.1| VgrG protein [Vibrio cholera CIRS 101] gi|262028179|gb|EEY46837.1| VgrG protein [Vibrio cholerae INDRE 91/1] gi|297541966|gb|EFH78017.1| vgrG protein [Vibrio cholerae MAK 757] Length = 1017 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMN 166 G+V TL A++ Sbjct: 782 YSIGAVDGIVGKGTLLALD 800 >gi|312109514|ref|YP_003987830.1| carboxyl-terminal protease [Geobacillus sp. Y4.1MC1] gi|311214615|gb|ADP73219.1| carboxyl-terminal protease [Geobacillus sp. Y4.1MC1] Length = 480 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V+ ++ L G F E+AVK FQ + L P+G +D Sbjct: 391 KALSFDMNNEQVKNAQQMLKGIGF--DPGRTDGYFSKETEAAVKAFQKANKLPPTGKIDK 448 Query: 160 STLEAMNVPVDLRIR 174 +T + + V IR Sbjct: 449 NTADVLQAKVMEAIR 463 >gi|330881024|gb|EGH15173.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 154 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +++N+ + G+ V + VGR +PI +++ NP W P S Sbjct: 96 PREGIVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPAS 154 >gi|328880515|emb|CCA53754.1| hypothetical protein SVEN_0467 [Streptomyces venezuelae ATCC 10712] Length = 363 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%) Query: 80 KAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 +A+ D + +P+ R + G+ V +L L G + +D Sbjct: 97 QALYELDDKPVTLLYGPVPVFREMKTGDRGSDVLQLERNLRDLGH-GAGLYVDTRYDKDT 155 Query: 139 ESAVKLFQMRHGLDPSGMVDSS 160 E+AVK +Q +P+G V Sbjct: 156 ETAVKRWQKSLNREPTGRVGKG 177 >gi|317472853|ref|ZP_07932161.1| autolytic lysozyme [Anaerostipes sp. 3_2_56FAA] gi|316899653|gb|EFV21659.1| autolytic lysozyme [Anaerostipes sp. 3_2_56FAA] Length = 315 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 17/110 (15%) Query: 65 SDIPIISKE--TIAQTEKAIAF--YQDILSRGGWPELPIRP-----LHLGNSSVSVQRLR 115 S S + ++ + +KAI Y + + G + G+ V ++ Sbjct: 212 STATAFSAKKASVLKLQKAINKDKYAKLTANGVLDSKTKNAMKKIFIKRGSRGAVVSFVQ 271 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 E++ +S D A +A++ +Q +HGL G+ TL M Sbjct: 272 EKVKVSQD--------GICGAKTVAAIRKYQRKHGLSVDGIAGYDTLRRM 313 >gi|114705430|ref|ZP_01438338.1| hypothetical protein FP2506_10836 [Fulvimarina pelagi HTCC2506] gi|114540215|gb|EAU43335.1| hypothetical protein FP2506_10836 [Fulvimarina pelagi HTCC2506] Length = 248 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 42/197 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + ++ R + ++V+ V+ G +R V VGR + Sbjct: 79 PAVDLSRVNPIYYRQEVADPTGEAPGTIVVDTANKFAYLVQPGGRAMRYGVGVGRAGME- 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 +++ P W P +IQ+ E ++ Sbjct: 138 WSGRAKVQWKKKWPTWTPPAEMIQRK----------------------------PELAEY 169 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 ++ +PG N + + + R+ Y +H +PE +SGC+R Sbjct: 170 SAENGGM-----EPGIGNPLGARALYLFQGGRDTLYRLHGSPEYWTIGTNN---SSGCIR 221 Query: 346 V--RNIIDLDVWLLKDT 360 ++IIDL + T Sbjct: 222 FMNQDIIDLYDRVPSGT 238 >gi|319408911|emb|CBI82568.1| conserved exported hypothetical protein [Bartonella schoenbuchensis R1] Length = 219 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%) Query: 301 DPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 PG N + + + F + +T +H + E +SGC+R+ ++IIDL Sbjct: 153 PPGPDNPLGARALYLFKNGQDTLFRIHGSYEEWSIGQ---AISSGCIRLLNQDIIDLYDR 209 Query: 356 LLKDT 360 + + Sbjct: 210 VPNGS 214 >gi|89098735|ref|ZP_01171616.1| carboxyl-terminal processing protease [Bacillus sp. NRRL B-14911] gi|89086411|gb|EAR65531.1| carboxyl-terminal processing protease [Bacillus sp. NRRL B-14911] Length = 475 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL L ++ V+ + L G F E+AVK FQ GL+ +G VDS Sbjct: 386 KPLVLDMNNEQVKNAQIMLDGLGL--SPGRKDGYFSEATETAVKAFQQHQGLEATGKVDS 443 Query: 160 STLEAMNV 167 T A+ Sbjct: 444 KTAAALEQ 451 >gi|269955655|ref|YP_003325444.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269304336|gb|ACZ29886.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 360 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G V+++++ L +G L F +AV+ +Q G+ G+V Sbjct: 123 LGAGTVGEDVRQIQQLLHDTGFLVAEPT--GRFGPATTAAVRAWQRSLGVTVDGVV 176 >gi|119773972|ref|YP_926712.1| peptidoglycan binding domain-containing protein [Shewanella amazonensis SB2B] gi|119766472|gb|ABL99042.1| peptidoglycan-binding domain 1 [Shewanella amazonensis SB2B] Length = 613 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 94 WPELPIRPLHLGNSSVS--VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P +G +S VQ L L + P FD +E+ +KLFQ +HGL Sbjct: 525 WQAPVYSPREIGIASPQPEVQWLENGLAKVDKITPRLVNE--FDTELENRLKLFQRQHGL 582 Query: 152 DPSGMVDSSTLEAMNV---PVDLRIRQ 175 G+ S TL+ +N+ R+ Q Sbjct: 583 KADGIAGSQTLQQLNLYLSNEGPRLVQ 609 >gi|328542424|ref|YP_004302533.1| hypothetical protein SL003B_0804 [polymorphum gilvum SL003B-26A1] gi|326412171|gb|ADZ69234.1| Hypothetical conserved protein [Polymorphum gilvum SL003B-26A1] Length = 214 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 12/155 (7%) Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L + ++ + P ++ Y V + + + + R+ Sbjct: 46 YRLTNFKRIDPVWHRQMV--KYFSPEPPGSVVVDTRNHFLYVVFENNTALRYGVGVGREG 103 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN--- 319 Q+ I + V + +P + + N + + Y Sbjct: 104 FQWFGRARIDRKALWPRWVPPP--EMLQRQPDLPRMVEGGAENNPLGPRALYLYRDGQDL 161 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 +H T EP R +SGCVR+ ++IDL Sbjct: 162 GYRLHGTLEPWSIG---RNVSSGCVRMFPEDVIDL 193 >gi|158317034|ref|YP_001509542.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EAN1pec] gi|158112439|gb|ABW14636.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EAN1pec] Length = 132 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 16/75 (21%) Query: 300 QDPGKINAMASTKIEFYS-----------RNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T P L + + GCVR+RN Sbjct: 56 RPGDPNGPWGPFAFGLSGFSDVITQFNGAEGIVGLHGTNRPDLVGSD---VSMGCVRLRN 112 Query: 349 II--DLDVWLLKDTP 361 L + TP Sbjct: 113 ADLLRLVDVVPLGTP 127 >gi|183179643|ref|ZP_02957854.1| vgrG protein [Vibrio cholerae MZO-3] gi|183013054|gb|EDT88354.1| vgrG protein [Vibrio cholerae MZO-3] Length = 1017 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-------- 150 GN S V+ L+E LI G G F ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQPSHQTHPS 781 Query: 151 ---LDPSGMVDSSTLEAMN 166 G+V + TL A++ Sbjct: 782 YSIGPVDGIVGNGTLLALD 800 >gi|168205823|ref|ZP_02631828.1| spore cortex-lytic enzyme SleC [Clostridium perfringens E str. JGS1987] gi|170662731|gb|EDT15414.1| spore cortex-lytic enzyme SleC [Clostridium perfringens E str. JGS1987] Length = 438 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 6/108 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + +VK FQ L + Sbjct: 329 PGYTLTSGASGEPVRVIQEQLNAISKAYPLIPKVAVDGKYGPRTRESVKTFQKVFNLPQT 388 Query: 155 GMVDSSTLEAMN--VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 G V+ +T ++ +I +L+ ++ + K + RY V Sbjct: 389 GEVNYATWYKISDVYVAVTKIAELRSSIEK-KIFYPPTIMDRYENVPK 435 >gi|119511038|ref|ZP_01630158.1| hypothetical protein N9414_09846 [Nodularia spumigena CCY9414] gi|119464289|gb|EAW45206.1| hypothetical protein N9414_09846 [Nodularia spumigena CCY9414] Length = 253 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 9/125 (7%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 R L G D + D A++ FQ + L G+ T + ++ Sbjct: 33 RAVLRGLGY-DVKVTNTTLTDEETRKAIREFQRGYKLTVDGVAGPQTQDF----AATIVQ 87 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 LQ NL + + + + A AV + + R L+ Sbjct: 88 ILQANLNAV-LQPDNPLPRDQFYRSQTEA---AVREAQKKFQMEETGIADLRFRQRLNEE 143 Query: 235 INRIM 239 +I+ Sbjct: 144 ARKII 148 >gi|296086490|emb|CBI32079.3| unnamed protein product [Vitis vinifera] Length = 334 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + +L+E G + S FD E A+K +Q+ L+ +G +D +TL Sbjct: 64 GDKADGLAKLKEYFHYFGYIHNSNYTDD-FDDAFEQALKTYQLNFNLNTTGQLDEATLNQ 122 Query: 165 MNVP 168 + P Sbjct: 123 IVSP 126 >gi|225424789|ref|XP_002267298.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 364 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + +L+E G + S FD E A+K +Q+ L+ +G +D +TL Sbjct: 55 GDKADGLAKLKEYFHYFGYIHNSNYTDD-FDDAFEQALKTYQLNFNLNTTGQLDEATLNQ 113 Query: 165 MNVP 168 + P Sbjct: 114 IVSP 117 >gi|255024368|ref|ZP_05296354.1| periplasmic protease [Listeria monocytogenes FSL J1-208] Length = 259 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D + AV+ FQ + LD +G++ Sbjct: 176 STKVYQNGDFGDDVRTIETMLKALDY--NVGKVDGLYDIDTKYAVERFQAANKLDVTGIM 233 Query: 158 DSSTLEAMNVPVDLRIR 174 T + + ++ Sbjct: 234 TGVTTDKLVELTQKHLK 250 >gi|302876662|ref|YP_003845295.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307687337|ref|ZP_07629783.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302579519|gb|ADL53531.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 410 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMR 148 G P PL + + +V+ ++ L + L P ++ +D AV+ FQ Sbjct: 322 GITQPYPGSPLTIEDKGSNVRIIQGHLNKISEAYPLIPKVTVNGIYDLATAEAVRKFQNT 381 Query: 149 HGLDPSGMVDSSTLEAMNV 167 +G+VD +T +++ Sbjct: 382 FKASETGIVDFATWYSISR 400 >gi|326942971|gb|AEA18867.1| carboxyl-terminal protease [Bacillus thuringiensis serovar chinensis CT-43] Length = 478 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIRS 462 >gi|228903654|ref|ZP_04067774.1| Carboxyl-terminal protease [Bacillus thuringiensis IBL 4222] gi|228911008|ref|ZP_04074816.1| Carboxyl-terminal protease [Bacillus thuringiensis IBL 200] gi|228848663|gb|EEM93509.1| Carboxyl-terminal protease [Bacillus thuringiensis IBL 200] gi|228855922|gb|EEN00462.1| Carboxyl-terminal protease [Bacillus thuringiensis IBL 4222] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|228961408|ref|ZP_04123022.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798293|gb|EEM45292.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pakistani str. T13001] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|228942316|ref|ZP_04104855.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975245|ref|ZP_04135803.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981883|ref|ZP_04142178.1| Carboxyl-terminal protease [Bacillus thuringiensis Bt407] gi|228777995|gb|EEM26267.1| Carboxyl-terminal protease [Bacillus thuringiensis Bt407] gi|228784524|gb|EEM32545.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817360|gb|EEM63446.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229032797|ref|ZP_04188754.1| Carboxyl-terminal protease [Bacillus cereus AH1271] gi|228728526|gb|EEL79545.1| Carboxyl-terminal protease [Bacillus cereus AH1271] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229105784|ref|ZP_04236413.1| Carboxyl-terminal protease [Bacillus cereus Rock3-28] gi|228677673|gb|EEL31921.1| Carboxyl-terminal protease [Bacillus cereus Rock3-28] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229099607|ref|ZP_04230535.1| Carboxyl-terminal protease [Bacillus cereus Rock3-29] gi|229118673|ref|ZP_04248025.1| Carboxyl-terminal protease [Bacillus cereus Rock1-3] gi|228664865|gb|EEL20355.1| Carboxyl-terminal protease [Bacillus cereus Rock1-3] gi|228683903|gb|EEL37853.1| Carboxyl-terminal protease [Bacillus cereus Rock3-29] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229112588|ref|ZP_04242125.1| Carboxyl-terminal protease [Bacillus cereus Rock1-15] gi|229130426|ref|ZP_04259383.1| Carboxyl-terminal protease [Bacillus cereus BDRD-Cer4] gi|228653021|gb|EEL08902.1| Carboxyl-terminal protease [Bacillus cereus BDRD-Cer4] gi|228670968|gb|EEL26275.1| Carboxyl-terminal protease [Bacillus cereus Rock1-15] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229164119|ref|ZP_04292055.1| Carboxyl-terminal protease [Bacillus cereus R309803] gi|228619355|gb|EEK76245.1| Carboxyl-terminal protease [Bacillus cereus R309803] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229014342|ref|ZP_04171461.1| Carboxyl-terminal protease [Bacillus mycoides DSM 2048] gi|229063831|ref|ZP_04200135.1| Carboxyl-terminal protease [Bacillus cereus AH603] gi|229135987|ref|ZP_04264747.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST196] gi|229169888|ref|ZP_04297584.1| Carboxyl-terminal protease [Bacillus cereus AH621] gi|228613602|gb|EEK70731.1| Carboxyl-terminal protease [Bacillus cereus AH621] gi|228647445|gb|EEL03520.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST196] gi|228716468|gb|EEL68172.1| Carboxyl-terminal protease [Bacillus cereus AH603] gi|228746942|gb|EEL96826.1| Carboxyl-terminal protease [Bacillus mycoides DSM 2048] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|228923905|ref|ZP_04087182.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955418|ref|ZP_04117423.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229050841|ref|ZP_04194393.1| Carboxyl-terminal protease [Bacillus cereus AH676] gi|229072627|ref|ZP_04205829.1| Carboxyl-terminal protease [Bacillus cereus F65185] gi|229082386|ref|ZP_04214849.1| Carboxyl-terminal protease [Bacillus cereus Rock4-2] gi|229147705|ref|ZP_04276048.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST24] gi|229153335|ref|ZP_04281513.1| Carboxyl-terminal protease [Bacillus cereus m1550] gi|229181435|ref|ZP_04308763.1| Carboxyl-terminal protease [Bacillus cereus 172560W] gi|228602010|gb|EEK59503.1| Carboxyl-terminal protease [Bacillus cereus 172560W] gi|228629939|gb|EEK86590.1| Carboxyl-terminal protease [Bacillus cereus m1550] gi|228635718|gb|EEK92205.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST24] gi|228700818|gb|EEL53341.1| Carboxyl-terminal protease [Bacillus cereus Rock4-2] gi|228710603|gb|EEL62576.1| Carboxyl-terminal protease [Bacillus cereus F65185] gi|228722497|gb|EEL73890.1| Carboxyl-terminal protease [Bacillus cereus AH676] gi|228804210|gb|EEM50824.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835704|gb|EEM81068.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|229193421|ref|ZP_04320369.1| Carboxyl-terminal protease [Bacillus cereus ATCC 10876] gi|228590076|gb|EEK47947.1| Carboxyl-terminal protease [Bacillus cereus ATCC 10876] Length = 494 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|218900302|ref|YP_002448713.1| carboxyl-terminal protease [Bacillus cereus G9842] gi|218545542|gb|ACK97936.1| carboxyl-terminal protease [Bacillus cereus G9842] Length = 478 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIRS 462 >gi|206970036|ref|ZP_03230989.1| carboxyl-terminal protease [Bacillus cereus AH1134] gi|218233322|ref|YP_002369956.1| carboxyl-terminal protease [Bacillus cereus B4264] gi|296505596|ref|YP_003667296.1| carboxyl-terminal protease [Bacillus thuringiensis BMB171] gi|206734613|gb|EDZ51782.1| carboxyl-terminal protease [Bacillus cereus AH1134] gi|218161279|gb|ACK61271.1| carboxyl-terminal protease [Bacillus cereus B4264] gi|296326648|gb|ADH09576.1| carboxyl-terminal protease [Bacillus thuringiensis BMB171] Length = 478 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIRS 462 >gi|30023217|ref|NP_834848.1| carboxyl-terminal protease [Bacillus cereus ATCC 14579] gi|29898777|gb|AAP12049.1| Tail-specific protease [Bacillus cereus ATCC 14579] Length = 478 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIRS 462 >gi|163942867|ref|YP_001647751.1| carboxyl-terminal protease [Bacillus weihenstephanensis KBAB4] gi|163865064|gb|ABY46123.1| carboxyl-terminal protease [Bacillus weihenstephanensis KBAB4] Length = 478 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIRS 462 >gi|89068213|ref|ZP_01155623.1| hypothetical protein OG2516_02089 [Oceanicola granulosus HTCC2516] gi|89046130|gb|EAR52188.1| hypothetical protein OG2516_02089 [Oceanicola granulosus HTCC2516] Length = 241 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 43/199 (21%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA-SLEAVENGKVGLRSTVIVGRVDRQ 227 + ++ L R + +V P A L +E LR V G R Sbjct: 63 PAVPEGVVREELWRQEVADPYGRYEVGSIVIDPDAGFLHLIEPDGRALRYGVGTGAAGRA 122 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 ++ + P W +P +I++ L P + + Sbjct: 123 -WNGNAVVQFKRHWPRWKVPAEMIERR--PDLA--PYSVAAGGM---------------- 161 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCV 344 DPG N + + + + + Y +H EP +SGC+ Sbjct: 162 -------------DPGPGNPLGARALYLFEDGVDTLYRIHGACEPENLGK---AVSSGCI 205 Query: 345 RV--RNIIDLDVWLLKDTP 361 R+ +++IDL + P Sbjct: 206 RMLDQDVIDLHDRVRHHAP 224 >gi|75759022|ref|ZP_00739130.1| Tail-specific protease [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493488|gb|EAO56596.1| Tail-specific protease [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 127 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 38 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 95 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 96 KTAEAIQTKIIEKIRS 111 >gi|293400970|ref|ZP_06645115.1| penicillin-resistant DD-carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305996|gb|EFE47240.1| penicillin-resistant DD-carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 168 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 101 PLHLGNSSVSVQRLRERLIIS---GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ + V +L+ L + + F E+AV+ +Q GL G++ Sbjct: 6 VIKRGDLGIGVNKLQAYLNMMQQRNLISTVNKQDGVFGPLTETAVREWQRYAGLPIDGVI 65 Query: 158 DSSTLEAM 165 + +T ++ Sbjct: 66 NYNTWNSL 73 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERL---IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G +SV +++E L + + + +AV+ +Q + L+ G++ Sbjct: 95 LSSGQQGLSVFKMQEYLNEIAATNKCLRPIPVDGIYGPRTVAAVQQYQYLYDLNVDGVIG 154 Query: 159 SSTLEAM 165 S T +++ Sbjct: 155 SMTWDSI 161 >gi|163737960|ref|ZP_02145376.1| Twin-arginine translocation pathway signal [Phaeobacter gallaeciensis BS107] gi|161388576|gb|EDQ12929.1| Twin-arginine translocation pathway signal [Phaeobacter gallaeciensis BS107] Length = 213 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 45/168 (26%) Query: 183 IKKLLEQK-MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + VLV+I + +L E+ V V D T ++I R + Sbjct: 70 KDWRPYFDSLRNGAVLVDIDSRALHFWSEDQSVYKLFPSSVPLSDDLTRRGRTKIIRKVD 129 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W ++ +++P++ Sbjct: 130 GPGWAPTPNMR--------KRNPEW-------------------------------PAYI 150 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + + +H T + R ++GC+ + N Sbjct: 151 PPGPDNPLGTHALYLSWKY-YRIHGTHDTRKIG---RKSSNGCIGLYN 194 >gi|307330400|ref|ZP_07609544.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] gi|306883917|gb|EFN14959.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] Length = 382 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 16/141 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV---- 157 + G+ V++L E L G F AV+ +Q GL +G V Sbjct: 145 MKSGDKGEDVRQLEENLQALGY--SGFTPDSEFTDLTAQAVERWQKTLGLSQTGKVTDGR 202 Query: 158 -----DSSTLEAMNVPVDLRIRQ----LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 + + PV +++ L + + ++ +G R ++ A++ Sbjct: 203 VVFASGALRIATHKAPVGSKVQPGGPVLTGTSSKRQVHVDLDIGDRSLVKKDGTATVTL- 261 Query: 209 ENGKVGLRSTVIVGRVDRQTP 229 +GK + VG ++TP Sbjct: 262 PDGKTVKGTITSVGTTVKKTP 282 >gi|240850144|ref|YP_002971537.1| ErfK/YbiS/YcfS/YnhG family protein [Bartonella grahamii as4aup] gi|240267267|gb|ACS50855.1| ErfK/YbiS/YcfS/YnhG family protein [Bartonella grahamii as4aup] Length = 247 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 53/220 (24%) Query: 145 FQMRHGLDPS-----GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 FQ + P G V + T + + + R + + ++V+ Sbjct: 30 FQQVRYIPPEIQALYGPVTNETYLL----PAVDLATIDPKFWRQEVIYYTSYPPGTLVVD 85 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L + LR + VG+ + R P W +++ ++ Sbjct: 86 TQECFLYLIGENGKALRYGIGVGKEG-LAFEGEGVVQRKRRWPNWAPTAAMMAREP---- 140 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE-FYSR 318 + PG N + + + F + Sbjct: 141 -------------------------------ERYGHLGKGMPPGPDNPLGARALYLFKNG 169 Query: 319 NNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 +T +H + E R +SGC+R+ ++IIDL Sbjct: 170 KDTLFRIHGSHESWSIG---RAISSGCIRLLNQDIIDLYD 206 >gi|187736183|ref|YP_001878295.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] gi|187426235|gb|ACD05514.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] Length = 156 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 43/180 (23%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDR-------QTPILHSRINRIMFNPYWVIPR 248 + +N+P L ++GK+ L+ V G+ +TP H RI + + + P Sbjct: 6 IRINLPRQELVLEKSGKILLQCPVSSGKAGTGHEEGSGKTPTGHFRICKKIGD---GEPE 62 Query: 249 SIIQKDMMALLR---QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 I + R P+ L +++ ++ + W Sbjct: 63 DTIFISRLPAGRYPTAIPKSLNEHSDFILTR---------ILWLDGLE----------PH 103 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA SR Y+H T + L + GC+R+ D+ Sbjct: 104 NA------NTRSRY-IYIHGTNDTELLGTP---ASHGCIRLS-PRDMMALFALAEEGMDV 152 >gi|163742645|ref|ZP_02150031.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Phaeobacter gallaeciensis 2.10] gi|161384230|gb|EDQ08613.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Phaeobacter gallaeciensis 2.10] Length = 213 Score = 47.3 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 45/168 (26%) Query: 183 IKKLLEQK-MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + VLV+I + +L E+ V V D T ++I R + Sbjct: 70 KDWRPYFDSLRNGAVLVDIDSRALHFWSEDQSVYKLFPSSVPLSDDLTRRGRTKIIRKVD 129 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W ++ +++P++ Sbjct: 130 GPGWAPTPNMR--------KRNPEW-------------------------------PAYI 150 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + + +H T + R ++GC+ + N Sbjct: 151 PPGPDNPLGTHALYLSWKY-YRIHGTHDTRKIG---RKSSNGCIGLYN 194 >gi|262368834|ref|ZP_06062163.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262316512|gb|EEY97550.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 166 Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 5/38 (13%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 Y+H TP+ + + GC+R+RN +I+L + Sbjct: 119 IYIHGTPDSEPMGMPM---SHGCIRMRNTDVIELFELI 153 >gi|153843209|ref|ZP_01993550.1| LysM domain protein [Vibrio parahaemolyticus AQ3810] gi|149745333|gb|EDM56584.1| LysM domain protein [Vibrio parahaemolyticus AQ3810] Length = 158 Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 192 GLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + +++N+ L G+ V V +GR+ R TP++ + I++ NP W P S Sbjct: 100 PHQGIVINLAELRLYYFPEGEDVVHVFPVGIGRIGRDTPVMTTSISQKRPNPTWTPPAS 158 >gi|260437975|ref|ZP_05791791.1| spore cortex-lytic enzyme SleC [Butyrivibrio crossotus DSM 2876] gi|292809601|gb|EFF68806.1| spore cortex-lytic enzyme SleC [Butyrivibrio crossotus DSM 2876] Length = 402 Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+ V ++E+L I + P + + ++V FQ + + Sbjct: 321 PGYTLEIGSYGPPVTTIQEQLSLIRRTYSNIPPLTVDGIYGKDTAASVSKFQETFNMPVT 380 Query: 155 GMVDSSTLEAMNV 167 G VD +T ++ Sbjct: 381 GTVDYATWYKISQ 393 >gi|172051608|emb|CAQ35003.1| hypothetical protein [Photobacterium damselae subsp. piscicida] Length = 464 Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 2/79 (2%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 ++ L G + + AVK FQ GL G V S LE + + + R Sbjct: 262 QQLLTDLGY--DPGPVDGDYGRRTADAVKAFQKAQGLTVDGWVSKSLLETLRLATSKKTR 319 Query: 175 QLQVNLMRIKKLLEQKMGL 193 + + + + Sbjct: 320 KYDPPTNTQSTMPGKDISD 338 >gi|212633984|ref|YP_002310509.1| ATPase [Shewanella piezotolerans WP3] gi|212555468|gb|ACJ27922.1| ATPase [Shewanella piezotolerans WP3] Length = 531 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W + +G S+ +Q L L I + P FD+++E VK FQ +HGL Sbjct: 442 WQAPKSQVNEIGKSANQAQLQWLENSLAIINESSPRLVSE--FDSHLEQKVKEFQRQHGL 499 Query: 152 DPSGMVDSSTLEAMN 166 G+ + TL +N Sbjct: 500 RADGIAGAQTLVQLN 514 >gi|47567393|ref|ZP_00238106.1| carboxyl-terminal protease [Bacillus cereus G9241] gi|47568463|ref|ZP_00239163.1| carboxyl-terminal protease [Bacillus cereus G9241] gi|47554854|gb|EAL13205.1| carboxyl-terminal protease [Bacillus cereus G9241] gi|47556014|gb|EAL14352.1| carboxyl-terminal protease [Bacillus cereus G9241] Length = 469 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNSNDVQVKHAQEMLKSLGY--VTGREDGYFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIRS 453 >gi|47569287|ref|ZP_00239972.1| carboxyl-terminal protease [Bacillus cereus G9241] gi|47554058|gb|EAL12424.1| carboxyl-terminal protease [Bacillus cereus G9241] Length = 494 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGY--VTGREDGYFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIRS 478 >gi|330994400|ref|ZP_08318326.1| hypothetical protein SXCC_04291 [Gluconacetobacter sp. SXCC-1] gi|329758526|gb|EGG75044.1| hypothetical protein SXCC_04291 [Gluconacetobacter sp. SXCC-1] Length = 568 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 8/88 (9%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y+ GG R ++ L+ RL+ G L + A+ Sbjct: 361 ERYRQ--RLGGTALEEAR--RPLDTH---IALQRRLVELGYLPAGTVADGVYGEATREAI 413 Query: 143 KLFQM-RHGLDPSGMVDSSTLEAMNVPV 169 +Q H + G V + + + P Sbjct: 414 ATWQRTTHRPETDGFVSDADAQVLLPPA 441 >gi|307943783|ref|ZP_07659127.1| N-acetylmuramoyl-L-alanine amidase [Roseibium sp. TrichSKD4] gi|307773413|gb|EFO32630.1| N-acetylmuramoyl-L-alanine amidase [Roseibium sp. TrichSKD4] Length = 258 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G++ V R RE L D L+ FD +E FQ G+ Sbjct: 149 PDGLLRRGDAGPDVHRWREDLDFYRDKIGHPYPVPLTGPFDHTLELVTMWFQKERGIQVD 208 Query: 155 GMVDSSTLEAMN 166 G+V LE M Sbjct: 209 GIVGPQVLEEMK 220 >gi|254562830|ref|YP_003069925.1| hypothetical protein METDI4470 [Methylobacterium extorquens DM4] gi|254270108|emb|CAX26098.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 243 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 8/92 (8%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY- 322 + I +I K K P+ +PG N + + R+ Y Sbjct: 116 FTWSGIAVIKRKAKWPGWRPTAAMLKRRPDIPHYVEPGVNNPLGCRALYLYQGDRDTLYR 175 Query: 323 MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 +H T EP +SGC+R+ +I+DL Sbjct: 176 IHGTNEPWTVGGTD---SSGCIRLLNEDILDL 204 >gi|238059219|ref|ZP_04603928.1| N-acetylmuramoyl-L-alanine amidase family 2 [Micromonospora sp. ATCC 39149] gi|237881030|gb|EEP69858.1| N-acetylmuramoyl-L-alanine amidase family 2 [Micromonospora sp. ATCC 39149] Length = 420 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 9/103 (8%) Query: 69 IISKETIAQTEKAIAF------YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 T+A + A L+ W L L S V ++ L G Sbjct: 309 TFDAATVAAVQDWQARNGIPVDVDATLTTPTWETLAPE-LDQHASGAPVSAVQFILEWKG 367 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ FD AV+ Q H L P G VD+ST A+ Sbjct: 368 Y--ADVAVTGEFDHATRRAVQDVQRLHSLPPDGRVDTSTWCAI 408 Score = 43.1 bits (100), Expect = 0.087, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--PSGMVDSSTLE 163 SS SV+ ++ L G + P ++ FDA +AV+ +Q R+G+ + + T E Sbjct: 286 SSPSVRVVQYLLTHRGYMVP---VNSTFDAATVAAVQDWQARNGIPVDVDATLTTPTWE 341 >gi|206599830|ref|YP_002241449.1| gp35 [Mycobacterium phage Troll4] gi|206283072|gb|ACI06497.1| gp35 [Mycobacterium phage Troll4] Length = 327 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIIS--GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L +G+ V +++ + F A + AV FQ R +D G Sbjct: 175 DGILRIGSEGPEVLKMQRGMNSVFKNYRAMPLLEDGIFGAKTKEAVVEFQQRSLIDVDGE 234 Query: 157 VDSSTLEAMN 166 V T + Sbjct: 235 VGPQTKAKLA 244 >gi|109522603|ref|YP_655415.1| gp36 [Mycobacterium phage PLot] gi|109522811|ref|YP_655231.1| gp35 [Mycobacterium phage PBI1] gi|189043188|ref|YP_001936127.1| gp36 [Mycobacterium phage Adjutor] gi|206599654|ref|YP_002241533.1| gp35 [Mycobacterium phage Butterscotch] gi|88910524|gb|ABD58451.1| gp35 [Mycobacterium phage PBI1] gi|88910710|gb|ABD58635.1| gp36 [Mycobacterium phage PLot] gi|188090839|gb|ACD49621.1| gp36 [Mycobacterium phage Adjutor] gi|206282836|gb|ACI06323.1| gp35 [Mycobacterium phage Butterscotch] Length = 327 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIIS--GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L +G+ V +++ + F A + AV FQ R +D G Sbjct: 175 DGILRIGSEGPEVLKMQRGMNSVFKNYRAMPLLEDGIFGAKTKEAVVEFQQRSLIDVDGE 234 Query: 157 VDSSTLEAMN 166 V T + Sbjct: 235 VGPQTKAKLA 244 >gi|261212669|ref|ZP_05926953.1| VgrG protein [Vibrio sp. RC341] gi|260837734|gb|EEX64411.1| VgrG protein [Vibrio sp. RC341] Length = 1050 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 11/78 (14%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG--------- 150 GN S V+ L+E LI G G F ++A++ FQ + Sbjct: 723 SAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQPSHQTHPSY 782 Query: 151 --LDPSGMVDSSTLEAMN 166 G+V TL A++ Sbjct: 783 SIGPVDGIVGKGTLLALD 800 >gi|258622292|ref|ZP_05717318.1| VgrG protein [Vibrio mimicus VM573] gi|258585616|gb|EEW10339.1| VgrG protein [Vibrio mimicus VM573] Length = 1025 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 35/178 (19%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQ-----TEKAIAFYQDILSRGGWPELPIRPLHL 104 + SD P ++ + K + + +R Sbjct: 674 ASLPTMMPSSANYTASDEPAAEEKAPERILKSDLLKPSDELEKLANRQ------ASAYRQ 727 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-----------LDP 153 GN+S V+ L++ LI G G F ++A++ FQ + Sbjct: 728 GNNSEEVRLLQQALIKLGFDLGKAGADGDFAGKTKTAIEQFQKSYQPSHQTHPSYSIGPV 787 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G+V TL L ++ + + + + + +P L G Sbjct: 788 DGIVGKGTL-------------LALDEALMDGWVHENDEMDMKWLTVPKGQLTFDAEG 832 >gi|206599740|ref|YP_002241929.1| gp34 [Mycobacterium phage Gumball] gi|206282954|gb|ACI06408.1| gp34 [Mycobacterium phage Gumball] Length = 327 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIIS--GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L +G+ V +++ + F A + AV FQ R +D G Sbjct: 175 DGILRIGSEGPEVLKMQRGMNSVFKNYRAMPLLEDGIFGAKTKEAVVEFQQRSLIDVDGE 234 Query: 157 VDSSTLEAMN 166 V T + Sbjct: 235 VGPQTKAKLA 244 >gi|296447409|ref|ZP_06889335.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylosinus trichosporium OB3b] gi|296255112|gb|EFH02213.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylosinus trichosporium OB3b] Length = 249 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 4/70 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-P 153 P + L G V L++ L G P +S +D + V FQ Sbjct: 170 PIVGGAALEPGAEGGEVSALQQALADYGYKSP---VSGCYDEGAAAVVAAFQRHFRPRLV 226 Query: 154 SGMVDSSTLE 163 G D STL+ Sbjct: 227 DGRADRSTLD 236 >gi|284033902|ref|YP_003383833.1| peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] gi|283813195|gb|ADB35034.1| Peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] Length = 206 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ +++ L+ L + + + + V Q RH L G+ T Sbjct: 126 RFGDPDTAIRTLQRNLNYC--YGSKLTIDGVYGSNTRAIVMQVQKRHKLAADGIYGPQTR 183 Query: 163 EAMN 166 MN Sbjct: 184 STMN 187 >gi|226096828|dbj|BAH45270.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 474 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 11/86 (12%) Query: 283 VEEVDWNSPEPPNF-----IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + N P + Q G N + + F N +H T P + Sbjct: 355 PVAIGKNDSTPEGYYTIQQKINQPRGHDNIYGTRGMVFQ-ENGYALHGTNHPESIGSS-- 411 Query: 338 FETSGCVRVRNI--IDLDVWLLKDTP 361 + GCVR+ N +L ++ T Sbjct: 412 -VSLGCVRLYNAAVEELYSFVSLGTE 436 >gi|194016849|ref|ZP_03055462.1| YvjB [Bacillus pumilus ATCC 7061] gi|194011455|gb|EDW21024.1| YvjB [Bacillus pumilus ATCC 7061] Length = 470 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L ++ V+ ++ + +D ++ VK FQ + L G++ Sbjct: 379 PKKTYQLNDNGDEVKAAQKMFQALDY---KAKANGEYDQAFQTIVKSFQTDNDLKADGIL 435 Query: 158 DSSTLEAMNVPVDLRIR 174 T + + +++ Sbjct: 436 TGDTTTVLMTKIQNKLK 452 >gi|187736589|ref|YP_001878701.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] gi|187426641|gb|ACD05920.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] Length = 215 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 52/208 (25%) Query: 166 NVPVDLRIRQLQVNLMRIKK-LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 ++P + R+ Q L G +++++++ + + S + G+ Sbjct: 56 DLPPEARLGQ-------GYWDLPAGTQGEKHIIIDLKQQKVFYYVGTTLVGVSPMSSGKE 108 Query: 225 DRQTPILHSRINRIMFNPY---WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 TP +I + N + + RS ++ + Y G Sbjct: 109 GYGTPRGTYKIIQKDANYKSGTYGVLRSKSTGAVV-----NGDYNARAG---GAPAGTYF 160 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + + R G MH + F + Sbjct: 161 DPAPM--------PYWMRITGG-----------------YGMH-----VGFVTGY-PVSH 189 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 GCVR+ D+ + TP ++ I Sbjct: 190 GCVRL--PEDMAKTFFEHTPIGTKVTIR 215 >gi|260430658|ref|ZP_05784630.1| ErfK/YbiS/YcfS/YnhG family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260418099|gb|EEX11357.1| ErfK/YbiS/YcfS/YnhG family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 221 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%) Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G N + + +R+ +H TP P R +SGCVR+ Sbjct: 145 PGGPTNPLGARAFYLYQGNRDTYLRIHGTPYPRSIG--GRA-SSGCVRM 190 >gi|329928740|ref|ZP_08282589.1| peptidase, S41 family [Paenibacillus sp. HGF5] gi|328937521|gb|EGG33939.1| peptidase, S41 family [Paenibacillus sp. HGF5] Length = 490 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V+ + L G + FD E AVK FQ +H L G+++ Sbjct: 400 STDVKNAQIMLEAVGY--AAGRTDGYFDRNTEKAVKSFQSKHKLKADGIIN 448 >gi|310641373|ref|YP_003946131.1| erfk/ybis/ycfs/ynhg family protein [Paenibacillus polymyxa SC2] gi|309246323|gb|ADO55890.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus polymyxa SC2] Length = 476 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%) Query: 297 IFRQDPGKINA-MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLD 353 GK N S ++ + N +H T EP + GCVR+ ++ +L Sbjct: 375 KVVNPNGKSNGEFGSRGMQLSATN-YAIHGTNEPESIGKNE---SLGCVRMGKEDVEELF 430 Query: 354 VWLLKDTP 361 + T Sbjct: 431 ALVPSGTE 438 >gi|310825721|ref|YP_003958078.1| putative muramoyl-pentapeptide carboxypeptidase [Eubacterium limosum KIST612] gi|308737455|gb|ADO35115.1| putative muramoyl-pentapeptide carboxypeptidase [Eubacterium limosum KIST612] Length = 173 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + ++ L G ++AVK FQ + G+ G+ T Sbjct: 3 ILEVQRILSHLGY--NPGEHDGLDGPNTQAAVKAFQRKAGIKADGIAGPVTR 52 >gi|261409610|ref|YP_003245851.1| carboxyl-terminal protease [Paenibacillus sp. Y412MC10] gi|261286073|gb|ACX68044.1| carboxyl-terminal protease [Paenibacillus sp. Y412MC10] Length = 490 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V+ + L G + FD E AVK FQ +H L G+++ Sbjct: 400 STDVKNAQIMLEAVGY--AAGRTDGYFDRNTEKAVKSFQSKHKLKADGIIN 448 >gi|222109277|ref|YP_002551541.1| peptidoglycan-binding domain 1 protein [Acidovorax ebreus TPSY] gi|221728721|gb|ACM31541.1| Peptidoglycan-binding domain 1 protein [Acidovorax ebreus TPSY] Length = 346 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ +ERL G + S A++ FQ GL +G +DS+T A++ Sbjct: 292 VREAQERLNAMGYNVGTPDGSA--GPKTARALREFQQAQGLPVTGRLDSATAGALSR 346 >gi|108801144|ref|YP_641341.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Mycobacterium sp. MCS] gi|119870276|ref|YP_940228.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. KMS] gi|126436973|ref|YP_001072664.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. JLS] gi|108771563|gb|ABG10285.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Mycobacterium sp. MCS] gi|119696365|gb|ABL93438.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. KMS] gi|126236773|gb|ABO00174.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. JLS] Length = 232 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 103 HLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDS 159 +G + V + RL + + E+AV+ FQ R GL G+V Sbjct: 163 RIGFADAHVAEAQRRLKYAYRRYAGHLEIDGVYGPETEAAVREFQRRTPGLLADGIVGP 221 >gi|308272916|emb|CBX29520.1| hypothetical protein N47_J05010 [uncultured Desulfobacterium sp.] Length = 164 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 47/184 (25%), Gaps = 58/184 (31%) Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG----------RVDR 226 N +KL Y++++ L K + V G + Sbjct: 4 AKNSALKQKLGSFNPNGVYIVIDTGLNRLYLKRGSKTIQEAIVSCGSGNILKDPSGKRQW 63 Query: 227 --QTPILHSRINRIMFNPYWVIP--RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 TP+ + +P W P I + + + Sbjct: 64 VFDTPMGEYHVKSKKISPVWTRPDWAFIEEGEAIPK-----------------------D 100 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 + R + G + + F + ++H T L R + G Sbjct: 101 PSQ-------------RIEKG---VLGDYALGFGN--GYFIHGTLYTRLLG---RNVSHG 139 Query: 343 CVRV 346 C+RV Sbjct: 140 CIRV 143 >gi|29566134|ref|NP_817703.1| gp25 [Mycobacterium phage Che9c] gi|29424859|gb|AAN12586.1| gp25 [Mycobacterium phage Che9c] Length = 317 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Query: 103 HLGNSSVSVQRLRERLI--ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LG+++ V+ L++ L SG + F E V FQ R G+ G+V Sbjct: 182 QLGDNNDRVRSLQQFLNDNFSGY--SKLDVDGDFGPLTEKVVAEFQRRVGVAADGIVGPV 239 Query: 161 TLEAM 165 TL + Sbjct: 240 TLAKL 244 >gi|227820506|ref|YP_002824477.1| Protein erfK/srfK precursor [Sinorhizobium fredii NGR234] gi|227339505|gb|ACP23724.1| Protein erfK/srfK precursor [Sinorhizobium fredii NGR234] Length = 212 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 52/184 (28%), Gaps = 44/184 (23%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 M+ P L R + ++++ +L V+ LR +V VGR Sbjct: 54 MSAPAYPPRHAPGAFLPRQVVKYRTQEAPGTIIIDTRRYALYYVQPHGTALRYSVGVGRE 113 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 ++R P W P DM A + P Y+ Sbjct: 114 G-YGWHGTEMVSRKRAWPEWRPPA-----DMRARRPELPAYMA----------------- 150 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 G N + + I +H + EP R +SGC Sbjct: 151 -----------------GGADNPLGARAIYLGDT-LYRIHGSNEPESVG---RSSSSGCF 189 Query: 345 RVRN 348 R+ N Sbjct: 190 RMTN 193 >gi|54297495|ref|YP_123864.1| hypothetical protein lpp1540 [Legionella pneumophila str. Paris] gi|53751280|emb|CAH12691.1| hypothetical protein lpp1540 [Legionella pneumophila str. Paris] Length = 162 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TP+ + GC+R+ N +I+L W K+T Sbjct: 119 IYIHGTPDTTQLGIPG---SHGCIRLNNDAVIELAAWATKNT 157 >gi|218708445|ref|YP_002416066.1| putative general secretion pathway protein A [Vibrio splendidus LGP32] gi|218321464|emb|CAV17416.1| putative general secretion pathway protein A [Vibrio splendidus LGP32] Length = 556 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 ++++ W + L G +V L ++S L S FD + Sbjct: 453 KQSLEQIWQGDYVAIWKQPLRETLKEGYQGEAVALLDL--LLSEVLGEVVSGSDVFDYEL 510 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 + ++ FQ G+ G+ TL + R+ QL Sbjct: 511 KMKIEAFQTWQGMSVDGIAGKLTLARL-----QRLAQL 543 >gi|302532517|ref|ZP_07284859.1| conserved hypothetical protein [Streptomyces sp. C] gi|302441412|gb|EFL13228.1| conserved hypothetical protein [Streptomyces sp. C] Length = 220 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 21/46 (45%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 F A SAVK +Q HG+ G +T+ AM V +RI Sbjct: 79 AADGLFGAGTRSAVKRWQSTHGVGADGTAGPATMSAMGVSRTVRIA 124 Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G L + +A++ FQ +GLD G + Sbjct: 19 LAGLGYLAAD-RVDGVDGPATRAALRDFQGDNGLDADGKYGAR 60 >gi|90426380|ref|YP_534750.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] gi|90108394|gb|ABD90431.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 226 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%) Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 D G N + + ++ Y +H T EP +SGC+R+ ++I+DL Sbjct: 160 DGGGANPLGPRALYLFKDGKDTLYRIHGTTEPETIGK---AVSSGCIRMLNQDIVDL 213 >gi|269956380|ref|YP_003326169.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269305061|gb|ACZ30611.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 360 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G V+++++ L +G L F +AV+ +Q G+ G+V Sbjct: 123 LGAGTVGEDVRQIQQLLHDTGFLVADPT--GRFGPATTAAVRAWQRSLGVTVDGVV 176 >gi|260904990|ref|ZP_05913312.1| N-acetymuramyl-L-alanine amidase [Brevibacterium linens BL2] Length = 354 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + V RL+ L G + + A ++AVK QM G G+ TL Sbjct: 68 TGDDVLRLQRTLAGLGFYA--GRMDAEYSAVTDAAVKELQMSLGTKVDGIAGPQTLR 122 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + G L+ S FD E V+ FQ G+ G++ T + Sbjct: 1 MARLG-LNVGDTDSDEFDRAFELGVRQFQQVRGILCDGVMGKETFTELER 49 >gi|169343303|ref|ZP_02864313.1| spore cortex-lytic enzyme SleC [Clostridium perfringens C str. JGS1495] gi|169298601|gb|EDS80682.1| spore cortex-lytic enzyme SleC [Clostridium perfringens C str. JGS1495] Length = 438 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 4/107 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + +VK FQ L + Sbjct: 329 PGYTLTSGASGEPVRVIQEQLNAISKAYPLIPKVAVDGKYGPRTRESVKTFQKVFNLPQT 388 Query: 155 GMVDSSTL-EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 G V+ +T + +V V + + + K + RY V Sbjct: 389 GEVNYATWYKISDVYVAVTKIAELRSSVEKKIFYPPTIMDRYENVPK 435 >gi|29830746|ref|NP_825380.1| peptidoglycan-binding protein [Streptomyces avermitilis MA-4680] gi|29607859|dbj|BAC71915.1| putative peptidoglycan-binding protein, secreted [Streptomyces avermitilis MA-4680] Length = 134 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LGN V L+ L + F A+K Q + G G+ +T Sbjct: 58 LALGNRGDGVLALQRTLRRC--YGSTIVADGIFGPSTRDALKYAQHQAGTQDDGVYGPNT 115 Query: 162 LEAMNVPVD 170 A+ Sbjct: 116 RRAIKHRPS 124 >gi|84502885|ref|ZP_01000998.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanicola batsensis HTCC2597] gi|84388868|gb|EAQ01738.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanicola batsensis HTCC2597] Length = 188 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 299 RQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLD 353 R G N + + + + N +H T EP R +SGC R+ N +IDL Sbjct: 119 RMPGGPGNPLGARALYLFEGNRDTLIRIHGTVEPRSIG---RRASSGCFRMINDHVIDLY 175 Query: 354 VWLLKDTP 361 + TP Sbjct: 176 NRVEIGTP 183 >gi|253578488|ref|ZP_04855760.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850806|gb|EES78764.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 521 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 58/236 (24%), Gaps = 78/236 (33%) Query: 143 KLFQMRHG-------------LDPSGMVDSST--LEAMNVPVDLRIRQLQVNLMRIKKLL 187 + FQ G +D + V T +++ + + N Sbjct: 332 REFQTTSGRTVSVYGSAYGWQIDQTSEVAQLTQEIQSGTQTTREPVYSMTANAHGY---- 387 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV---DRQTPILHSRINRIMFNPYW 244 +G Y+ V++ + +NG+ S ++ G + DRQTP I Sbjct: 388 -NDIGNTYIEVDLSEQHMYFYQNGEDIFESDIVSGDMRYSDRQTPAGIYTIYYKK----- 441 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + + + + Q Sbjct: 442 -------------------------------------SPDVLRGKQLANGKYEYEQPV-- 462 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRV--RNIIDLDVWL 356 + + F HD F + + GC+ + +L + Sbjct: 463 -----TYWMPFNG--GIGFHDANWQPYFGGDRFMEGGSHGCINMPPEKAAELYNII 511 >gi|308068492|ref|YP_003870097.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus polymyxa E681] gi|305857771|gb|ADM69559.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus polymyxa E681] Length = 474 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 7/68 (10%) Query: 297 IFRQDPGKINA-MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLD 353 GK N S ++ + N +H T +P + GCVR+ ++ +L Sbjct: 373 KVVNPNGKSNGEFGSRGMQLSATN-YAIHGTNKPDSIGKNE---SLGCVRMGKEDVEELF 428 Query: 354 VWLLKDTP 361 + T Sbjct: 429 ALVPSGTE 436 >gi|109897279|ref|YP_660534.1| peptidoglycan binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109699560|gb|ABG39480.1| Peptidoglycan-binding domain 1 [Pseudoalteromonas atlantica T6c] Length = 199 Score = 46.9 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 ++RLI L+ FD A K FQ GL +G+ D +TL Sbjct: 145 KQRLIKMDYLNALGSDD--FDQETLDAFKHFQRDRGLAQTGVPDQNTL 190 >gi|225427043|ref|XP_002267238.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 370 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L++ G L + FD+ E+AV ++Q + GL SG +DS T+ Sbjct: 53 GSQVSGMSELKKYFQRFGYLPVPNTNFTDVFDSRFETAVIMYQTKLGLPVSGKLDSKTIT 112 Query: 164 AMNVP 168 A+ P Sbjct: 113 AIVSP 117 >gi|147773502|emb|CAN66781.1| hypothetical protein VITISV_013507 [Vitis vinifera] Length = 373 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L++ G L + FD+ E+AV ++Q + GL SG +DS T+ Sbjct: 53 GSQVSGMSELKKYFQRFGYLPVPNTNFTDVFDSRFETAVIMYQTKLGLPVSGKLDSKTIT 112 Query: 164 AMNVP 168 A+ P Sbjct: 113 AIVSP 117 >gi|269796068|ref|YP_003315523.1| hypothetical protein Sked_27870 [Sanguibacter keddieii DSM 10542] gi|269098253|gb|ACZ22689.1| hypothetical protein Sked_27870 [Sanguibacter keddieii DSM 10542] Length = 515 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 ELP R L +G S V +L++ L G ++P S +DA +AV Sbjct: 126 GELPAYRTLRVGVSGPDVLQLKQALAALG-INPGNVESDVYDAATVAAV 173 >gi|253564757|ref|ZP_04842213.1| peptidoglycan-binding domain 1 protein [Bacteroides sp. 3_2_5] gi|251946222|gb|EES86599.1| peptidoglycan-binding domain 1 protein [Bacteroides sp. 3_2_5] Length = 264 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 6/78 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + LG L L +G S S F ++ +V FQ + LD G+V Sbjct: 2 KTIKLGYEGEEALLLCRELKRNGY---SVKESRTFTQEMKESVVDFQQKSQLDADGIVGY 58 Query: 160 STLEAM---NVPVDLRIR 174 T E++ P R+ Sbjct: 59 RTWESLFFTGRPTTERLT 76 >gi|83645387|ref|YP_433822.1| membrane-bound lytic murein transglycosylase B [Hahella chejuensis KCTC 2396] gi|83633430|gb|ABC29397.1| Membrane-bound lytic murein transglycosylase B [Hahella chejuensis KCTC 2396] Length = 404 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PELP PL +V L+++L G + A++ FQ + G+ Sbjct: 334 PELPRLPLT------AVADLQQKLTDKGF--DAGKSDGIMGPATRDAIRAFQEKQGMIAD 385 Query: 155 GMVDSSTLEAMNVPVD 170 G + L+A+++ + Sbjct: 386 GYPNPEVLQALDIKIQ 401 >gi|75908094|ref|YP_322390.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75701819|gb|ABA21495.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 261 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 VQ L+ L +P + E+A+K FQ +H L+ +G+ + + + ++ Sbjct: 96 VQILQANLNAVLKTNPPLPRDQFYGPKTEAAIKEFQTKHKLEATGIANLALRQKLDEEAK 155 Query: 171 LRIRQLQVNLMRIKKLLEQKMG 192 I Q Sbjct: 156 KVISQPSTEPTAKPSPSPTSKP 177 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 7/90 (7%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNVPVDLRI 173 R L G + + DA + A+ FQ + L G+ T + + Sbjct: 42 RTVLRGLGY-NVKVTNTPLTDAETKKAISEFQKGYKLTPVDGIAGPKTQDF----AANIV 96 Query: 174 RQLQVNLMR-IKKLLEQKMGLRYVLVNIPA 202 + LQ NL +K Y A Sbjct: 97 QILQANLNAVLKTNPPLPRDQFYGPKTEAA 126 >gi|182420023|ref|ZP_02951257.1| spore cortex-lytic enzyme pre-pro-form [Clostridium butyricum 5521] gi|237669468|ref|ZP_04529448.1| peptidoglycan-binding domain 1 protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376060|gb|EDT73647.1| spore cortex-lytic enzyme pre-pro-form [Clostridium butyricum 5521] gi|237654912|gb|EEP52472.1| peptidoglycan-binding domain 1 protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 441 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V+ ++E+L I L P + V +VK+FQ L + Sbjct: 330 PGYDLTVGSSGEPVRTIQEQLNRIAQNYPLIPKLAQDGQYTDKVAESVKVFQGVFSLPQT 389 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 390 GVVDYATWYKIS 401 >gi|254466468|ref|ZP_05079879.1| twin-arginine translocation pathway signal [Rhodobacterales bacterium Y4I] gi|206687376|gb|EDZ47858.1| twin-arginine translocation pathway signal [Rhodobacterales bacterium Y4I] Length = 205 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 4/83 (4%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L + K + P + PG N + + + + +H Sbjct: 108 LTRRGRTQVVRKVEGPSWSPTPNMRKRNPEWPAYVPPGPDNPLGTHALYLSWKY-YRIHG 166 Query: 326 TPEPILFNNVVRFETSGCVRVRN 348 T + R ++GC+ + N Sbjct: 167 THDTRKIG---RKSSNGCIGLYN 186 >gi|271964678|ref|YP_003338874.1| hypothetical protein Sros_3186 [Streptosporangium roseum DSM 43021] gi|270507853|gb|ACZ86131.1| hypothetical protein Sros_3186 [Streptosporangium roseum DSM 43021] Length = 256 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%) Query: 95 PELPIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P P R L V+ + ++ G + + A + FQ GL Sbjct: 181 PSFPGRVLKYPPVMVGEDVRTWQRQMRRRG---WDLDVDGLYGEASRDACRAFQREKGLS 237 Query: 153 PSGMVDSSTLEA 164 +G V+ +T +A Sbjct: 238 ATGAVNRATWQA 249 >gi|302534571|ref|ZP_07286913.1| membrane protein [Streptomyces sp. C] gi|302443466|gb|EFL15282.1| membrane protein [Streptomyces sp. C] Length = 471 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 21/84 (25%), Gaps = 5/84 (5%) Query: 87 DILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA----FDAYVESA 141 + G P P R G S +V L RL G D A Sbjct: 386 ALPGSAGVPAYPGLRVFRPGQSHPAVLALGRRLAQKGFGKYYTSGPGLRWSEADRRNVEA 445 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 + Q G G T + Sbjct: 446 FQRAQGWRGGSADGYPGPETWRRL 469 >gi|154684734|ref|YP_001419895.1| YbfG [Bacillus amyloliquefaciens FZB42] gi|154350585|gb|ABS72664.1| YbfG [Bacillus amyloliquefaciens FZB42] Length = 724 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 11/132 (8%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA-------- 164 L+ L G G S F ESAVK FQ GL G+V + ++A Sbjct: 83 LQGALWCKGF--NPGGFSGVFYENTESAVKEFQKAAGLTKQDGIVTALIMKALLDMSAFR 140 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + D RIRQ+Q NL R M + +L + + ++V G Sbjct: 141 LVAGGDKRIRQIQQNLNRDYNDYIGLMPCDGLYARDTNKALIYALQKEESMSTSVANGFF 200 Query: 225 DRQTPILHSRIN 236 T L + Sbjct: 201 GNGTTSLCPTLT 212 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 8/158 (5%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 LI+ L + + A D+ I + ++ D D G+ +K I Sbjct: 128 LIMKALLDMSAFRLVAGG-DKRIRQIQQNLNRDYNDYIGLMPCDGL--YARDTNKALIYA 184 Query: 78 TEKAIAFYQDILSRGGWPELPIR---PLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVA 133 +K ++ G + L G+S V ++ L +G+ Sbjct: 185 LQKE-ESMSTSVANGFFGNGTTSLCPTLTPGDSRTGFVLIVQYALYCNGEAFDPGEFDGK 243 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + V SAVK FQ L +G D T++A+ Sbjct: 244 YGVGVVSAVKAFQKFMCLPQTGYADMPTIKALLSSSGD 281 >gi|90418212|ref|ZP_01226124.1| lytic murein transglycosylase [Aurantimonas manganoxydans SI85-9A1] gi|90337884|gb|EAS51535.1| lytic murein transglycosylase [Aurantimonas manganoxydans SI85-9A1] Length = 395 Score = 46.9 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P + + G + +RL++RL G + G+ +AV+ QMR GL Sbjct: 325 GAPPVDMGNPQPGLDLEATKRLQQRLTDLGY--DTGGVDGIIGENTRAAVRKEQMRLGLP 382 Query: 153 PSGMVDSSTLEAM 165 G + L A+ Sbjct: 383 ADGWPTADLLRAL 395 >gi|118593468|ref|ZP_01550848.1| hypothetical protein SIAM614_16952 [Stappia aggregata IAM 12614] gi|118433947|gb|EAV40605.1| hypothetical protein SIAM614_16952 [Stappia aggregata IAM 12614] Length = 259 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + ++++++ L G A +A++ F+ GL +G +E + Sbjct: 192 DVDPKLKKIQQALSELGY--GPLKADGVMGANTTAAIRRFEFDRGLPMTGEPGPKVIERL 249 Query: 166 NV 167 + Sbjct: 250 EM 251 >gi|326491397|dbj|BAJ94176.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 373 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 11/74 (14%) Query: 106 NSSVSVQ---RLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHGLDPS 154 V L+ L G + G AFD ++E+AVK +Q R L + Sbjct: 55 QRGTRVTGLGDLKRYLATFGYMPKPAGAGAEHGGGPMDAFDEHLEAAVKRYQSRLSLPVT 114 Query: 155 GMVDSSTLEAMNVP 168 G +D TL+ M P Sbjct: 115 GRLDVVTLDQMMSP 128 >gi|229818792|ref|YP_002880318.1| Peptidoglycan-binding domain 1 protein [Beutenbergia cavernae DSM 12333] gi|229564705|gb|ACQ78556.1| Peptidoglycan-binding domain 1 protein [Beutenbergia cavernae DSM 12333] Length = 282 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 12/96 (12%) Query: 82 IAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + Y+ I+ G P++ L G+ V+ L++ L P+ F Sbjct: 186 LNGYR-IVGGGRPPKVVVAQGAAGLKNGDRGPRVKALQQALNRWRSDLPALVADGVFGDL 244 Query: 138 VESAVKLFQMRHGL-------DPSGMVDSSTLEAMN 166 E ++ +Q R+ G+ TL A++ Sbjct: 245 TERRLREWQTRNRGGAYPAAAQIDGVAGPLTLAALD 280 >gi|330822714|ref|YP_004386017.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] gi|329308086|gb|AEB82501.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] Length = 346 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ +ERL G + S A++ FQ + GL +G +D++T A++ Sbjct: 292 VREAQERLNALGYNVGTPDGSA--GPKTARALREFQQQQGLPVTGRLDAATAGALSR 346 >gi|319760794|ref|YP_004124731.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] gi|317115355|gb|ADU97843.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] Length = 346 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ +ERL G + S A++ FQ + GL +G +D++T A++ Sbjct: 292 VREAQERLNALGYNVGTPDGSA--GPKTARALREFQQQQGLPVTGRLDAATAGALSR 346 >gi|226941432|ref|YP_002796506.1| ErfK/YbiS/YcfS/YnhG protein [Laribacter hongkongensis HLHK9] gi|226716359|gb|ACO75497.1| ErfK/YbiS/YcfS/YnhG protein [Laribacter hongkongensis HLHK9] Length = 162 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 10/71 (14%) Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV-RFETSGCVRVRNIIDLDVWLLKDT 360 PG N + R Y+H TP+ + R + GCVR+RN D+ + Sbjct: 100 PG-RNRLGPVDTM---RRYIYLHGTPD----AVDMTRPGSHGCVRMRN-RDIAELFDRVV 150 Query: 361 PTWSRYHIEEV 371 P +E Sbjct: 151 PGTPVEIVEHA 161 >gi|224136290|ref|XP_002322292.1| predicted protein [Populus trichocarpa] gi|222869288|gb|EEF06419.1| predicted protein [Populus trichocarpa] Length = 376 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G + +L+ G + S + FD Y+ESA++ +Q L+ +G +D T+ Sbjct: 64 GKKYDGLAKLKHYFQYFGYIPNSLSNFTDDFDDYLESALRTYQQNFNLNVTGELDDQTVN 123 Query: 164 AMNVP 168 + P Sbjct: 124 HVVRP 128 >gi|75675836|ref|YP_318257.1| lytic murein transglycosylase [Nitrobacter winogradskyi Nb-255] gi|74420706|gb|ABA04905.1| Lytic murein transglycosylase [Nitrobacter winogradskyi Nb-255] Length = 407 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VQ ++ RL +G + G AVK FQ R GL P G L + Sbjct: 349 AEVQEVQTRLTQAGF--DTGGTDGRVGNDTMKAVKDFQARVGLPPDGYAGLKVLAKLRQ 405 >gi|7480279|pir||T34747 muramoyl-pentapeptide carboxypeptidase - Streptomyces coelicolor (fragment) Length = 189 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 16/35 (45%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + A +AVK FQ +GL G+ +T + Sbjct: 16 DGQYGARTAAAVKKFQADYGLGADGVAGPATFSKI 50 >gi|94265641|ref|ZP_01289383.1| Peptidoglycan-binding domain 1 [delta proteobacterium MLMS-1] gi|93453851|gb|EAT04214.1| Peptidoglycan-binding domain 1 [delta proteobacterium MLMS-1] Length = 358 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Query: 83 AFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Y ++ S P P ++ ++ L G + + E Sbjct: 128 QHYNNLQSNPALIKPTPDSDPSKPSAKH--IREAQQILTEIGY--DPGPIDGLYGRKTEG 183 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 AVK FQ L G++D TL + + V+ + +L Sbjct: 184 AVKAFQGDAKLPQHGLIDQETLTFLRMVVEQKKIKL 219 >gi|323490202|ref|ZP_08095420.1| carboxy-terminal processing protease [Planococcus donghaensis MPA1U2] gi|323396131|gb|EGA88959.1| carboxy-terminal processing protease [Planococcus donghaensis MPA1U2] Length = 507 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS-S 160 L G S V+ + L G + F+ + AVK FQ L+ +G++ S Sbjct: 405 LKDGTISEQVKTAEQMLEALGY--DVGEVDGVFEEQMTEAVKAFQEEKELEATGVLTEDS 462 Query: 161 TLEAMNV 167 T M+ Sbjct: 463 TFAVMDA 469 >gi|291007888|ref|ZP_06565861.1| hypothetical protein SeryN2_25476 [Saccharopolyspora erythraea NRRL 2338] Length = 378 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 105 GN-SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ +V+ L+ L G P+ + +AV FQ +GL P+G+ D + Sbjct: 318 GDGQGDAVRALQTLLTSRGHYVPA---DAHYAGRTATAVSDFQAANGLQPTGVADHEVWK 374 Query: 164 AM 165 + Sbjct: 375 RL 376 >gi|88860965|ref|ZP_01135601.1| hypothetical protein PTD2_10463 [Pseudoalteromonas tunicata D2] gi|88817178|gb|EAR26997.1| hypothetical protein PTD2_10463 [Pseudoalteromonas tunicata D2] Length = 490 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + +L G + + + + +A+K FQ GL +G VD +T +A+ Sbjct: 299 QAQLNCLGYI-NDQEAAGKYTPNTVAAIKRFQQESGLTVNGKVDEATNKALA 349 >gi|330799115|ref|XP_003287593.1| hypothetical protein DICPUDRAFT_47448 [Dictyostelium purpureum] gi|325082379|gb|EGC35862.1| hypothetical protein DICPUDRAFT_47448 [Dictyostelium purpureum] Length = 772 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 100 RPLHLG----NSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPS 154 L G ++ +V L L G LD + + E AVK FQ + L + Sbjct: 319 ESLKEGLKGTSTGEAVSLLNYSLYSIGCLDEYNHSTREIYTSTTEYAVKKFQEENNLPST 378 Query: 155 GMVDSSTLE 163 G+ D +T+ Sbjct: 379 GVADFNTIR 387 >gi|259417407|ref|ZP_05741326.1| twin-arginine translocation pathway signal [Silicibacter sp. TrichCH4B] gi|259346313|gb|EEW58127.1| twin-arginine translocation pathway signal [Silicibacter sp. TrichCH4B] Length = 205 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 45/172 (26%) Query: 179 NLMRIKKLLEQK-MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRIN 236 + + +LV+I + +L E+ V V D T ++I Sbjct: 58 SFRAKSWRPYFDNLRRGAILVDIDSRALHFWSEDQSVYKLFPSSVPLSDDLTRRGRTKIV 117 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 R + P W ++ +++P++ Sbjct: 118 RKVEGPGWAPTPNMR--------KRNPEW------------------------------- 138 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + + +H T + R ++GC+ + N Sbjct: 139 PAYIPPGPDNPLGTHALYLSWKY-YRIHGTHDTRKIG---RKSSNGCIGLYN 186 >gi|284038486|ref|YP_003388416.1| peptidoglycan-binding protein [Spirosoma linguale DSM 74] gi|283817779|gb|ADB39617.1| Peptidoglycan-binding domain 1 protein [Spirosoma linguale DSM 74] Length = 155 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%) Query: 105 GNSSVSVQRLRE--RLIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+S V+R++E L + L F + AV+ FQ L +G+V Sbjct: 19 GSSGPDVRRIQEWLCLNALRYPTAALTTTLDGEFGPATKLAVQNFQAVLKLPKTGVVTPD 78 Query: 161 TLEAMNVPVD 170 ++ P+ Sbjct: 79 LFAKLSAPLA 88 >gi|241203659|ref|YP_002974755.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857549|gb|ACS55216.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 268 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 46/220 (20%) Query: 144 LFQMRHGLDPSG----MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 F +GL + + + + + ++Q +R + + V+++ Sbjct: 75 QFHQTYGLPVTNPVHMAMYGQQRDEDFTLPAIPVSRVQPQFLRQEVDYQTAERPGTVVID 134 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 A L VE +R V +GR D I P W +M++ Sbjct: 135 TKAHFLYFVEGNGKAMRYGVGLGR-DGYAWSGRGVIQWKQKWPRWTP-----SVEMVSRQ 188 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YS 317 + + +N +PG +N + + + Sbjct: 189 PEVRPFGAENGGM----------------------------NPGLMNPLGARAMYIFKDG 220 Query: 318 RNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 ++ Y +H TP+ +SGCVR+ +++IDL Sbjct: 221 QDTLYRIHGTPDWQSVGK---ATSSGCVRMLNQDVIDLYD 257 >gi|163790212|ref|ZP_02184645.1| phiSLT ORF484-like protein, lysin [Carnobacterium sp. AT7] gi|159874487|gb|EDP68558.1| phiSLT ORF484-like protein, lysin [Carnobacterium sp. AT7] Length = 337 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 4/63 (6%) Query: 108 SVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V +++ + G+ + AV+ FQ +GL G T Sbjct: 270 GADVLVMQQAMASIYYYPEKGAEKNGVDGWYGPLTVDAVERFQSVYGLTVDGTFGPKTRA 329 Query: 164 AMN 166 ++ Sbjct: 330 KLS 332 >gi|163795922|ref|ZP_02189885.1| LysM-repeat protein [alpha proteobacterium BAL199] gi|159178677|gb|EDP63215.1| LysM-repeat protein [alpha proteobacterium BAL199] Length = 151 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 10/104 (9%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V+ ++RL G + A++ FQ L +G +D T A+ Sbjct: 20 AQSNQVRDAQQRLEALGH--SPGQIDGLMGPQTRDALRAFQQDKSLPATGELDWETRLAL 77 Query: 166 NVP--------VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 + + R V + I L P Sbjct: 78 SASVRSIDDAKPAPKPRSAPVPQVAISSLNPPGHPDIRSSEPSP 121 >gi|92115924|ref|YP_575653.1| hypothetical protein Nham_0297 [Nitrobacter hamburgensis X14] gi|91798818|gb|ABE61193.1| hypothetical protein Nham_0297 [Nitrobacter hamburgensis X14] Length = 1123 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 95 PELPIRP-LHLGNS-SVSVQRLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHG 150 P + P L LG + LR RL + G D YV SA++L+Q HG Sbjct: 80 PAVGEGPVLTLGAGFDSRIPGLRTRLSV----PSWVGQHDALVLDEYVSSALELYQWAHG 135 Query: 151 LDPSGMVDS---STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 L +G +D+ TL+ + Q + + + E ++ P Sbjct: 136 LPETGTLDAVTVGTLDRNVRTTSVPNDQQALTNIEPQPAPESELAETQTETRTP 189 >gi|84503170|ref|ZP_01001255.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanicola batsensis HTCC2597] gi|159046320|ref|YP_001541992.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|159046595|ref|YP_001542265.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|84388411|gb|EAQ01360.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanicola batsensis HTCC2597] gi|157914079|gb|ABV95511.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] gi|157914354|gb|ABV95784.1| ErfK/YbiS/YcfS/YnhG family protein [Dinoroseobacter shibae DFL 12] Length = 186 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 55/190 (28%), Gaps = 48/190 (25%) Query: 164 AMNVPVDLRIRQLQVNLMRIK---KLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTV 219 A+ P +R ++ N+ + +G ++ + +L+ Sbjct: 21 ALVAPSVVRAETIRRNISSFRVHDWQDHFDTLGKGIIISDTVTMALQHWTADGEMRIYPT 80 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 V D T ++ + NP W S+ + ++P++ Sbjct: 81 SVPLTDELTKRGYTEVVEKRKNPSWAPTPSMRE--------RNPEW-------------- 118 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 R + G N + + + + +H T + R Sbjct: 119 -----------------PARIEGGDPDNPLGTRALYLSWQY-YRIHGTQDTRKIG---RR 157 Query: 339 ETSGCVRVRN 348 ++GC+ + N Sbjct: 158 SSNGCIGLFN 167 >gi|114762585|ref|ZP_01442029.1| ErfK/YbiS/YcfS/YnhG family protein [Pelagibaca bermudensis HTCC2601] gi|114544840|gb|EAU47845.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius sp. HTCC2601] Length = 172 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 55/190 (28%), Gaps = 48/190 (25%) Query: 164 AMNVPVDLRIRQLQVNLMRIK---KLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTV 219 A+ P +R ++ N+ + +G ++ + +L+ Sbjct: 7 ALVAPSVVRAETIRRNISSFRVHDWQDHFDTLGKGIIISDTVTMALQHWTADGEMRIYPT 66 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 V D T ++ + NP W S+ + ++P++ Sbjct: 67 SVPLTDELTKRGYTEVVEKRKNPSWAPTPSMRE--------RNPEW-------------- 104 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 R + G N + + + + +H T + R Sbjct: 105 -----------------PARIEGGDPDNPLGTRALYLSWQY-YRIHGTQDTRKIG---RR 143 Query: 339 ETSGCVRVRN 348 ++GC+ + N Sbjct: 144 SSNGCIGLFN 153 >gi|134100266|ref|YP_001105927.1| hypothetical protein SACE_3731 [Saccharopolyspora erythraea NRRL 2338] gi|133912889|emb|CAM03002.1| hypothetical protein SACE_3731 [Saccharopolyspora erythraea NRRL 2338] Length = 368 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 105 GN-SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ +V+ L+ L G P+ + +AV FQ +GL P+G+ D + Sbjct: 308 GDGQGDAVRALQTLLTSRGHYVPA---DAHYAGRTATAVSDFQAANGLQPTGVADHEVWK 364 Query: 164 AM 165 + Sbjct: 365 RL 366 >gi|27375195|ref|NP_766724.1| hypothetical protein blr0084 [Bradyrhizobium japonicum USDA 110] gi|27348331|dbj|BAC45349.1| blr0084 [Bradyrhizobium japonicum USDA 110] Length = 462 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + +V +++ L G +P ++AV FQ ++GL +G++D +T+ A+ Sbjct: 206 DIASTVVLMQQALNKLG-ANPPLAEDGISGPKTKAAVSQFQQQNGLRDTGLLDGATVAAV 264 Query: 166 NV 167 Sbjct: 265 TR 266 >gi|261405729|ref|YP_003241970.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. Y412MC10] gi|261282192|gb|ACX64163.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. Y412MC10] Length = 102 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 12/73 (16%) Query: 304 KINAMASTKIEFYSR------NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 N + + + +H + ++GC+R+ N WL Sbjct: 36 PRNPLGDRWLGINVKVNGRTSYAYAIHG-NNANSIGK---YVSAGCIRMHNKD--VRWLY 89 Query: 358 KDTPTWSRYHIEE 370 + I++ Sbjct: 90 DKVKMNTPVLIQK 102 >gi|254392825|ref|ZP_05007996.1| peptidoglycan-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|294817691|ref|ZP_06776333.1| Putative peptidoglycan binding protein [Streptomyces clavuligerus ATCC 27064] gi|326446603|ref|ZP_08221337.1| hypothetical protein SclaA2_36292 [Streptomyces clavuligerus ATCC 27064] gi|197706483|gb|EDY52295.1| peptidoglycan-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|294322506|gb|EFG04641.1| Putative peptidoglycan binding protein [Streptomyces clavuligerus ATCC 27064] Length = 419 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 11/136 (8%) Query: 100 RPLHLG-NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G + V+ L L G P+ + F AV+ +Q G +G Sbjct: 152 RTLEPGVDDGPDVEMLERNLKALGH-GPALTVDDHFTEGTADAVRAWQDSLGRTETGTAA 210 Query: 159 SSTLEAMNVPVDLRIRQL--QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 +A+ P +R+ + + LL R V V++P A + G Sbjct: 211 PG--DAVVEPGAVRVTETLGIIGADAADTLLTLSGTRRIVTVDMPVAQQQLARLGAT--- 265 Query: 217 STVIVGRVDRQTPILH 232 V +G +T Sbjct: 266 --VRIGLPGGRTTTGK 279 >gi|326508750|dbj|BAJ95897.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326534042|dbj|BAJ89371.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 382 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMV 157 R L +G+ V+ ++E L G + +F E AVK +Q G G++ Sbjct: 182 KRALRVGSEGEEVRAMQEALEKLGFYSGEEDTEFSSFSTGTERAVKTWQASIGTTEDGLM 241 Query: 158 DSSTLE 163 S LE Sbjct: 242 TSELLE 247 >gi|326503598|dbj|BAJ86305.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 382 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMV 157 R L +G+ V+ ++E L G + +F E AVK +Q G G++ Sbjct: 182 KRALRVGSEGEEVRAMQEALEKLGFYSGEEDTEFSSFSTGTERAVKTWQASIGTTEDGLM 241 Query: 158 DSSTLE 163 S LE Sbjct: 242 TSELLE 247 >gi|148359119|ref|YP_001250326.1| hypothetical protein LPC_1007 [Legionella pneumophila str. Corby] gi|296107167|ref|YP_003618867.1| hypothetical protein lpa_02299 [Legionella pneumophila 2300/99 Alcoy] gi|148280892|gb|ABQ54980.1| conserved hypothetical protein [Legionella pneumophila str. Corby] gi|295649068|gb|ADG24915.1| Conserved hypothetical protein [Legionella pneumophila 2300/99 Alcoy] gi|307610282|emb|CBW99846.1| hypothetical protein LPW_16071 [Legionella pneumophila 130b] Length = 162 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TP+ + GC+R+ N II+L W K+T Sbjct: 119 IYIHGTPDTTQLGIPG---SHGCIRLNNDAIIELAAWATKNT 157 >gi|52841812|ref|YP_095611.1| hypothetical protein lpg1582 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628923|gb|AAU27664.1| hypothetical protein lpg1582 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 146 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TP+ + GC+R+ N II+L W K+T Sbjct: 103 IYIHGTPDTTQLGIPG---SHGCIRLNNDAIIELAAWATKNT 141 >gi|54294374|ref|YP_126789.1| hypothetical protein lpl1443 [Legionella pneumophila str. Lens] gi|53754206|emb|CAH15683.1| hypothetical protein lpl1443 [Legionella pneumophila str. Lens] Length = 162 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TP+ + GC+R+ N II+L W K+T Sbjct: 119 IYIHGTPDTTQLGIPG---SHGCIRLNNDAIIELAAWATKNT 157 >gi|121998052|ref|YP_001002839.1| ErfK/YbiS/YcfS/YnhG family protein [Halorhodospira halophila SL1] gi|121589457|gb|ABM62037.1| ErfK/YbiS/YcfS/YnhG family protein [Halorhodospira halophila SL1] Length = 180 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNI--IDLDVWLLKDTPTW 363 Y+H P+ + GCVR+RN IDL + TP W Sbjct: 124 IYIHGCPDSEPVGVPC---SHGCVRMRNAAVIDLFDAVTGGTPVW 165 >gi|163792344|ref|ZP_02186321.1| hypothetical protein BAL199_15893 [alpha proteobacterium BAL199] gi|159182049|gb|EDP66558.1| hypothetical protein BAL199_15893 [alpha proteobacterium BAL199] Length = 552 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S V R++ L+ G + +AV+ +Q G+ G++D++ L ++ Sbjct: 444 RSPLVGRIQSALLERGF--DPGPVDGVQGPQTVAAVQAYQRYRGVTADGVIDAALLRSLK 501 Query: 167 VPVDLRIR 174 R R Sbjct: 502 TAPSPRPR 509 >gi|146282103|ref|YP_001172256.1| hypothetical protein PST_1736 [Pseudomonas stutzeri A1501] gi|145570308|gb|ABP79414.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 174 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 Y+H TP+ + + GCVR+RN L L P + I E Sbjct: 118 IYIHGTPDCEPMSVP---LSHGCVRMRNADLL--QLFPRVPPHCQVRITEA 163 >gi|147773983|emb|CAN76268.1| hypothetical protein VITISV_004096 [Vitis vinifera] Length = 364 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + +L+E G + S FD E A+K +Q+ L+ +G +D +TL Sbjct: 55 GDKADGLAKLKEYFHYFGYIHNSNYTDD-FDDAFEQALKTYQLNFNLNTTGQLDXATLNQ 113 Query: 165 MNVP 168 + P Sbjct: 114 IVSP 117 >gi|15613529|ref|NP_241832.1| N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase) [Bacillus halodurans C-125] gi|10173581|dbj|BAB04685.1| N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase) [Bacillus halodurans C-125] Length = 338 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%) Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL-----SVAF 134 K+ + I G + L V L+ ++ D+ + + F Sbjct: 246 KSFQRKERITVDGIPGPVTQSRLLHKLQYSRVLYLQNPMMKGEDVRQVQRVVNVNPDSLF 305 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTL 162 E + +Q +HGL G V T Sbjct: 306 GPQTERGARHYQQKHGLTVDGKVGPQTW 333 Score = 43.1 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 1/95 (1%) Query: 86 QDILSRGGWPELPIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + + G ++ L +V L+ +L+ G+ +A+K Sbjct: 188 KQKAAVGASKQVTTSGYDLIQRYFSNVSVLQRQLMAVGEDLSRYRDDGVAGKETLTAIKS 247 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 FQ + + G+ T + + N Sbjct: 248 FQRKERITVDGIPGPVTQSRLLHKLQYSRVLYLQN 282 >gi|218462264|ref|ZP_03502355.1| Peptidoglycan-binding domain 1 protein [Rhizobium etli Kim 5] Length = 244 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 L +RL + G + A+K FQ L +G D +T+EA+ Sbjct: 8 LIQRLRLHGAYA--GVVDDVHGRATIEALKRFQHAEALPETGQADETTIEALRCDPARVP 65 Query: 174 RQLQVNLMRIKKLLEQK 190 V + ++ + Sbjct: 66 SSAPVAVTPAPRMPPEP 82 >gi|239941793|ref|ZP_04693730.1| peptidoglycan binding domain-containing protein [Streptomyces roseosporus NRRL 15998] gi|239988253|ref|ZP_04708917.1| peptidoglycan binding domain-containing protein [Streptomyces roseosporus NRRL 11379] Length = 430 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 14/138 (10%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFL-----ARVDMGIDSDIPIISKETIAQTE 79 S++ P+ VL + + + R D + + P+ + + + + Sbjct: 63 SVLTAPVQRKVLSDTVITRGKVAASQRLDVSGEGVGEKSSGRSVVTKAPVRTGQPL-RMG 121 Query: 80 KAIAFYQDILSRGGW---PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + +I R + E+P R L G++ V +L++ L G + F Sbjct: 122 QLLL---EISGRPVFVLRGEVPAYRDLGPGSTGQDVSQLQQALAGLGYGSGNDRA-GTFG 177 Query: 136 AYVESAVKLFQMRHGLDP 153 E+AV F HG P Sbjct: 178 PGTEAAVTRFYRAHGHAP 195 >gi|228993887|ref|ZP_04153790.1| Carboxyl-terminal protease [Bacillus pseudomycoides DSM 12442] gi|228765838|gb|EEM14489.1| Carboxyl-terminal protease [Bacillus pseudomycoides DSM 12442] Length = 494 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEMTGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQNKIIEKIRS 478 >gi|228999923|ref|ZP_04159495.1| Carboxyl-terminal protease [Bacillus mycoides Rock3-17] gi|229007476|ref|ZP_04165073.1| Carboxyl-terminal protease [Bacillus mycoides Rock1-4] gi|228753864|gb|EEM03305.1| Carboxyl-terminal protease [Bacillus mycoides Rock1-4] gi|228759865|gb|EEM08839.1| Carboxyl-terminal protease [Bacillus mycoides Rock3-17] Length = 494 Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEMTGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQNKIIEKIRS 478 >gi|319899254|ref|YP_004159347.1| peptidoglycan-binding protein [Bartonella clarridgeiae 73] gi|319403218|emb|CBI76777.1| peptidoglycan-binding protein [Bartonella clarridgeiae 73] Length = 420 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ RL GD + + A+K FQ+RHGL+ +G TL + Sbjct: 364 IELQSRLAKLGDY--EGEIDGKIGTASKKAIKAFQLRHGLETNGYPSYETLSHIRK 417 >gi|224138608|ref|XP_002326645.1| predicted protein [Populus trichocarpa] gi|222833967|gb|EEE72444.1| predicted protein [Populus trichocarpa] Length = 365 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + L+E G L + FD ESAV +Q GL +G +DS T+ Sbjct: 61 GSQVSGMSELKEYFNRFGYLPIPDENNFTDIFDKQFESAVIAYQTNLGLPVTGKLDSDTI 120 Query: 163 EAMNVP 168 M P Sbjct: 121 SMMVSP 126 >gi|171913275|ref|ZP_02928745.1| hypothetical protein VspiD_18885 [Verrucomicrobium spinosum DSM 4136] Length = 187 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 49/190 (25%), Gaps = 36/190 (18%) Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 P + Q + + + G V + + + + + + G+ R Sbjct: 16 KPTPPPVGQTPAKPVLYEWNGDSIEGPVSVKIVLDEQKAYIYKGTEQVGWTYLASGKGSR 75 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +P + RI + + Y + D +G V + Sbjct: 76 ASPAGNYRITEKIQDK----------------------YSNTWG-VLEDAEGNVVDGDAR 112 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 P PP F P + MH R + GC+R+ Sbjct: 113 SGREPIPPGGRFAGAPMP------YWMRLT-GYGMGMHA----GHIPQPGRPASHGCIRL 161 Query: 347 RNIIDLDVWL 356 ++ L Sbjct: 162 --PREMAEIL 169 >gi|116071002|ref|ZP_01468271.1| hypothetical protein BL107_15190 [Synechococcus sp. BL107] gi|116066407|gb|EAU72164.1| hypothetical protein BL107_15190 [Synechococcus sp. BL107] Length = 128 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 52/155 (33%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + V++ L ENGKV + + +G + T I R +P Sbjct: 3 IEVSLKNRYLTLFENGKVIGKYPIAIGAPESPTIPGQFDIQRKDASP------------- 49 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + +KGK + PG N + + + Sbjct: 50 -----------------IYHKKGKVI-------------------APGPDNPVGVRYMPY 73 Query: 316 Y--SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 R+ +H T P N + GC+R+ N Sbjct: 74 VRIGRDEYAIHGTAWPSWVNLRA-AVSLGCIRMLN 107 >gi|83593041|ref|YP_426793.1| lytic murein transglycosylase [Rhodospirillum rubrum ATCC 11170] gi|83575955|gb|ABC22506.1| Lytic murein transglycosylase [Rhodospirillum rubrum ATCC 11170] Length = 454 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 49/170 (28%), Gaps = 26/170 (15%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPI-------- 69 ++LP GL L + + R AR + +P Sbjct: 287 VVLPAGLDLARVGLEERRPLADWAALGLRGADGRALGAGARAGVTAALLLPAGYRGPAFL 346 Query: 70 ISKETIAQTEKAIAFYQDIL-------SRGGWPEL---PIR--PLHLGNSSVSVQRLRER 117 ++ + + + + + GG P + P PL S V ++ R Sbjct: 347 VTDNYFSILKWNRSMLYALAVGLLADRAAGGGPLVHPPPADEAPLR----SADVAEIQSR 402 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L G + A A++ +Q G G + + L + Sbjct: 403 LSALGY--DAGTADGVIGAQTRVAIRAYQASIGAPADGYANDALLADLRR 450 >gi|312200872|ref|YP_004020933.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EuI1c] gi|311232208|gb|ADP85063.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EuI1c] Length = 254 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 +H T EP L + + GC+R+ N I L + TP Sbjct: 210 IGLHGTNEPQLLGHD---VSHGCIRLSNDAITRLAGTVPTGTPVD 251 >gi|332307806|ref|YP_004435657.1| Peptidoglycan-binding domain 1 protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175135|gb|AEE24389.1| Peptidoglycan-binding domain 1 protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 199 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 ++RL L FD A K FQ +GL +G+ D +TL Sbjct: 145 KQRLRKMDYLKDMGSSD--FDQATLDAFKHFQRDNGLAQTGVPDQNTL 190 >gi|255525438|ref|ZP_05392376.1| Peptidoglycan-binding domain 1 protein [Clostridium carboxidivorans P7] gi|296187864|ref|ZP_06856258.1| hypothetical protein CLCAR_3370 [Clostridium carboxidivorans P7] gi|255510905|gb|EET87207.1| Peptidoglycan-binding domain 1 protein [Clostridium carboxidivorans P7] gi|296047821|gb|EFG87261.1| hypothetical protein CLCAR_3370 [Clostridium carboxidivorans P7] Length = 302 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L N S V+ ++ L + + + E AVK Q + G++ G+ Sbjct: 46 STVTIKLNNKSDIVKHIQVTLNL--YFGSGLAEDGVYGNFTEDAVKSVQKKLGINVDGIF 103 Query: 158 DSSTLEAM 165 T +A+ Sbjct: 104 GPKTAKAL 111 Score = 40.0 bits (92), Expect = 0.82, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 16/99 (16%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I +T K + I + G+ + ++++LI G + Sbjct: 102 IFGPKTAKALLKYVNN-TSIDDKNGFTPVS-------------VNIQKQLIDLGYKINAN 147 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 G ++D + A++ FQ + L +G VD + L +N Sbjct: 148 GNLSSYDTML--AIRQFQKTNNLSVTGKVDINLLNKLNK 184 >gi|148245158|ref|YP_001219851.1| glycosyl hydrolase [Clostridium kluyveri DSM 555] gi|219684036|ref|YP_002470418.1| hypothetical protein CKR_P08 [Clostridium kluyveri NBRC 12016] gi|146337038|gb|ABQ23649.1| predicted glycosyl hydrolase [Clostridium kluyveri DSM 555] gi|219570544|dbj|BAH08527.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 306 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ S V ++++L L + + +D AV Q G++ T Sbjct: 243 GHKSHVVLWIQQKLEQYEYLKENSYTQMLYDEPTFQAVTELQKNWERPTDGVLRPETWN 301 >gi|15894595|ref|NP_347944.1| peptodoglycan-binding domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15024244|gb|AAK79284.1|AE007643_7 Peptodoglycan-binding domain containing protein [Clostridium acetobutylicum ATCC 824] gi|325508730|gb|ADZ20366.1| Peptodoglycan-binding domain containing protein [Clostridium acetobutylicum EA 2018] Length = 148 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 32/131 (24%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIA---FY---QDILSRGGWPELPIRPLHLGN 106 ++ + +V + +++ + A T Y Q ++ GG + G+ Sbjct: 33 NHPIPKVSAPVATNLNATKSKMFASTRTYGTSFGRYMTAQQVIDNGG-------IIQEGD 85 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM-------RHG----LDPSG 155 + V ++ RL I F + SAV FQ R+G L G Sbjct: 86 TGEPVADIQRRLGI--------YDDGIFGSATYSAVVDFQRRIDREFHRNGYSDPLALDG 137 Query: 156 MVDSSTLEAMN 166 +V + T + Sbjct: 138 IVGAQTWYYLK 148 >gi|308272732|emb|CBX29336.1| hypothetical protein N47_J03170 [uncultured Desulfobacterium sp.] Length = 234 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + R ++ L +G S +D AVK FQ G+ G+ S TL Sbjct: 164 RIMRFQKLLKEAGTYHKSLT--GTYDKDTLLAVKQFQSSKGIKQDGIAGSQTL 214 >gi|291545277|emb|CBL18386.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus sp. 18P13] Length = 165 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 6/112 (5%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPEL---PIRPLHLGNSSVSVQRLRERLIIS 121 ++P + A + + Y+ + + L G+S V ++ L Sbjct: 53 YNLPATGEVNRATWDAIVRAYRKQTAEPDALNVFPSAGYVLREGDSGTLVYIVQAMLNDI 112 Query: 122 G---DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 G D ++ +F+A +A++ Q L +G VD T M V Sbjct: 113 GSRYDNLAPVAINGSFNAATTNAIRGVQQAADLPQTGAVDRDTWNWMVTAVQ 164 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 P+ + SAV+ FQ + L +G V+ +T +A+ Sbjct: 30 PTVTPDGIYGPRTVSAVQAFQKIYNLPATGEVNRATWDAIVR 71 >gi|209965073|ref|YP_002297988.1| localization factor PodJL [Rhodospirillum centenum SW] gi|209958539|gb|ACI99175.1| localization factor PodJL [Rhodospirillum centenum SW] Length = 335 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 7/111 (6%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++Q ++ L G DA +AVK +Q GL +G +D +T++ + Sbjct: 65 GATIQWAQQILDEKGFYQGRA--HGRLDAATTAAVKAYQKSVGLKVTGTLDKATVDRLLA 122 Query: 168 PVDLRIRQLQVNLM----RIKKLLEQKMGLRYVLVNIPAAS-LEAVENGKV 213 + NL R + P+A + AVE G+ Sbjct: 123 DRSTAEKPTVGNLADPNSRARSSSPMVKERDVRPTAAPSAPGVSAVEGGET 173 >gi|289522182|ref|ZP_06439036.1| ErfK/YbiS/YcfS/YnhG family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504018|gb|EFD25182.1| ErfK/YbiS/YcfS/YnhG family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 225 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 20/141 (14%) Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIP--RSIIQKDMMALLRQDPQYLKDNNIHMID 275 + ++ +L + W++ R+ QK + +R +I Sbjct: 87 KITWVCSKKEHVLLALSETDKVIYGGWMVATGRNPGQKLKVGDMRTPEGVFYVKSIEDSS 146 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G V + + R + G +H T + L Sbjct: 147 FWGSYVDKATKE--RIGYGPYFIRLETGWK--------------GIGIHGTDDEHLHEIG 190 Query: 336 VRFETSGCVRVRNIIDLDVWL 356 + GC+R+ N DL + Sbjct: 191 T-DASHGCIRMAN-DDLLEVV 209 >gi|257454013|ref|ZP_05619287.1| ErfK/YbiS/YcfS/YnhG [Enhydrobacter aerosaccus SK60] gi|257448491|gb|EEV23460.1| ErfK/YbiS/YcfS/YnhG [Enhydrobacter aerosaccus SK60] Length = 165 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y+H TP + GC+R+RN Sbjct: 121 IYIHGTPNTEPMGIP---LSHGCIRMRN 145 >gi|239943286|ref|ZP_04695223.1| hypothetical protein SrosN15_19988 [Streptomyces roseosporus NRRL 15998] gi|239989744|ref|ZP_04710408.1| hypothetical protein SrosN1_20750 [Streptomyces roseosporus NRRL 11379] Length = 358 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R + G+ V +L L G + + E+AVK +Q + Sbjct: 108 GPVPAFREMKTGHRGSDVLQLERNLRDLGY-GAGLHVDTEYGEDTEAAVKRWQKHLNRET 166 Query: 154 SGMVDSS 160 +G V Sbjct: 167 TGRVGRG 173 >gi|149911042|ref|ZP_01899670.1| general secretion pathway protein a [Moritella sp. PE36] gi|149805868|gb|EDM65856.1| general secretion pathway protein a [Moritella sp. PE36] Length = 546 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 4/63 (6%) Query: 101 PLHLGNSSVSVQRL-RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L + ++ L R + G FD + V FQ + GL G+V Sbjct: 463 SLKQNDKGELIRWLDRNISAVLG---EKAASGAKFDWPLMKKVMRFQQQSGLSADGIVGP 519 Query: 160 STL 162 T+ Sbjct: 520 QTM 522 >gi|86740676|ref|YP_481076.1| ErfK/YbiS/YcfS/YnhG [Frankia sp. CcI3] gi|86567538|gb|ABD11347.1| ErfK/YbiS/YcfS/YnhG [Frankia sp. CcI3] Length = 277 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 13/81 (16%) Query: 296 FIFRQDPGKINAMASTKIEFYSRNN--------TYMHDTPEPILFNNVVRFETSGCVRVR 347 R G A F + +H T +P R + GC+R+ Sbjct: 200 LRPRNPTGPYGPFAFGLSGFSTSLASFEGHAPIIGLHGTDQPHTLG---RDVSHGCIRLS 256 Query: 348 NIIDLDVWLLKDTPTWSRYHI 368 N WL P + I Sbjct: 257 NSD--ITWLAGMLPLGTPVDI 275 >gi|224122140|ref|XP_002318762.1| predicted protein [Populus trichocarpa] gi|222859435|gb|EEE96982.1| predicted protein [Populus trichocarpa] Length = 341 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G + +L+ G + S + FD +ESA++ +Q L+ +G +D T+ Sbjct: 55 GEKYDGLAKLKSYFQYFGYIPNSLSNFTDDFDDSLESALRTYQQNFNLNITGQLDDQTVN 114 Query: 164 AMNVP 168 + P Sbjct: 115 HIVRP 119 >gi|71278853|ref|YP_269370.1| CHAP domain-containing protein [Colwellia psychrerythraea 34H] gi|71144593|gb|AAZ25066.1| CHAP domain protein [Colwellia psychrerythraea 34H] Length = 265 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 6/80 (7%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH----G--LDPS 154 L V +L++ L +G + K FD LFQ++H G L P Sbjct: 4 TLKRLIPDPEVIKLQQLLSSNGYFEEIKPSHGLFDGITFDNAVLFQLQHIYKDGDPLKPD 63 Query: 155 GMVDSSTLEAMNVPVDLRIR 174 G++ + T A+ P + R Sbjct: 64 GVIGAKTWWALKNPSGEKQR 83 >gi|254465139|ref|ZP_05078550.1| Putative peptidoglycan binding domain protein [Rhodobacterales bacterium Y4I] gi|206686047|gb|EDZ46529.1| Putative peptidoglycan binding domain protein [Rhodobacterales bacterium Y4I] Length = 3030 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 3/102 (2%) Query: 106 NSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 ++ V L+E L + G +D + AF ++A++ Q R GL PSG VD++T A Sbjct: 13 DTGEHVAALQEALGVEGFTVDAEELQHAAFGRSTQTALRELQERVGLTPSGNVDAATARA 72 Query: 165 MNVPVDLR--IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 ++ +D R +++ + L ++ L E A + Sbjct: 73 ISERLDRRGLLQESRAVLRDLRSLREGIALEDMPSEARAAFT 114 >gi|119490227|ref|ZP_01622740.1| probable phage-related lysozyme [Lyngbya sp. PCC 8106] gi|119454113|gb|EAW35266.1| probable phage-related lysozyme [Lyngbya sp. PCC 8106] Length = 284 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 19/152 (12%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 ++ +L + S L + +N + F + + + T Sbjct: 147 LVSFCFNLGAGSLFKSTLLKFLNVRKLQEASLEFPRWNKAGGQPL-----------LGLT 195 Query: 79 EKAIAFYQDILSRGGW-PELPIRPLHLGN---SSVSVQRLRERLIISGDLDPSKGLSVAF 134 + +A + + W P L L L S V+ +++ L +G + F Sbjct: 196 RRRMAE-RALFLGKPWQPFLEYELLQLTQPKIKSEYVRYVQQGLQKAGF---DIQKNGVF 251 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 D ++A+K FQ + LDP G+V T+ + Sbjct: 252 DLETDAAMKKFQAQKRLDPDGLVGPITITELG 283 >gi|15218963|ref|NP_176205.1| matrixin family protein [Arabidopsis thaliana] gi|4249376|gb|AAD14473.1| Strong similarity to gi|2829864 F3I6.6 zinc metalloproteinase homolog from Arabidopsis thaliana BAC gb|AC002396. EST gb|Z26412 comes from this gene gi|51971615|dbj|BAD44472.1| predicted GPI-anchored protein [Arabidopsis thaliana] gi|94442451|gb|ABF19013.1| At1g59970 [Arabidopsis thaliana] gi|332195524|gb|AEE33645.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana] Length = 360 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 89 LSRGGWPELPIRPL---HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 ++ W L H+G + + +L++ G + + + FD ++SA+ + Sbjct: 37 ATQNAWETFS--KLAGCHIGENINGLSKLKQYFRRFGYITTTGNCTDDFDDVLQSAINTY 94 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q L +G +DSSTL + P Sbjct: 95 QKNFNLKVTGKLDSSTLRQIVKP 117 >gi|223982820|ref|ZP_03633044.1| hypothetical protein HOLDEFILI_00318 [Holdemania filiformis DSM 12042] gi|223965219|gb|EEF69507.1| hypothetical protein HOLDEFILI_00318 [Holdemania filiformis DSM 12042] Length = 543 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 20/151 (13%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 G V++P + + N + S + + D ++ P++ T + + Sbjct: 393 GSVQVQRPFADGSVLKYTNSRWLSPNEEWINGVGITPDQIVE-LPPVLQTTTASFMMEED 451 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y L S V ++ L P+ FDA A+ Sbjct: 452 ESY-----------------TLDQVSEHVASAQKALAFLDY--PAGRSDGYFDASTAQAL 492 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 + +Q H L+ SG++D++TL+++ V R Sbjct: 493 RWYQSEHNLEASGVLDAATLQSLVSGVRYRW 523 >gi|254470560|ref|ZP_05083964.1| N-acetylmuramoyl-L-alanine amidase [Pseudovibrio sp. JE062] gi|211960871|gb|EEA96067.1| N-acetylmuramoyl-L-alanine amidase [Pseudovibrio sp. JE062] Length = 252 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLE 163 G+ ++ L+ L + G +S FD AV+ FQ G+ D+ T+ Sbjct: 184 GDEGQPIEALQSLLGLYGY---DVMVSGVFDEKTRFAVEAFQRHFRPAKVDGIADAQTIA 240 >gi|15965043|ref|NP_385396.1| hypothetical protein SMc01374 [Sinorhizobium meliloti 1021] gi|307301115|ref|ZP_07580884.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|15074222|emb|CAC45869.1| Hypothetical protein SMc01374 [Sinorhizobium meliloti 1021] gi|306904070|gb|EFN34656.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 408 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 10/137 (7%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE---TIAQTEKAIAFYQDILSR 91 V+ + F +R SD+P+ + E A+ + Sbjct: 136 VISDRQIAPVEVASEMLFQPSESRPKGPALSDVPLRPAIGEFNQSAVEVAMTDKRPSPVA 195 Query: 92 GGWPELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLSVAF-DAYVESAVKLFQMR 148 ++PIR L G SV+ L+ L G GL F +A++ FQ Sbjct: 196 SDEEKVPIRILITRRGTQ-ESVRDLQTLLNTLGY---DAGLPDGFSGPATAAAIEAFQRA 251 Query: 149 HGLDPSGMVDSSTLEAM 165 GL G + +EA+ Sbjct: 252 EGLPVEGKITPELIEAV 268 >gi|327480339|gb|AEA83649.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 174 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 Y+H TP+ + + GCVR+RN L L P + I E Sbjct: 118 IYIHGTPDCEPMSVP---LSHGCVRMRNADLL--QLFPRVPPHCQVRITEA 163 >gi|291445240|ref|ZP_06584630.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] gi|291348187|gb|EFE75091.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] Length = 486 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 14/138 (10%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFL-----ARVDMGIDSDIPIISKETIAQTE 79 S++ P+ VL + + + R D + + P+ + + + + Sbjct: 119 SVLTAPVQRKVLSDTVITRGKVAASQRLDVSGEGVGEKSSGRSVVTKAPVRTGQPL-RMG 177 Query: 80 KAIAFYQDILSRGGW---PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + +I R + E+P R L G++ V +L++ L G + F Sbjct: 178 QLLL---EISGRPVFVLRGEVPAYRDLGPGSTGQDVSQLQQALAGLGYGSGNDRA-GTFG 233 Query: 136 AYVESAVKLFQMRHGLDP 153 E+AV F HG P Sbjct: 234 PGTEAAVTRFYRAHGHAP 251 >gi|310816790|ref|YP_003964754.1| peptidoglycan-binding domain 1 [Ketogulonicigenium vulgare Y25] gi|308755525|gb|ADO43454.1| peptidoglycan-binding domain 1 [Ketogulonicigenium vulgare Y25] Length = 560 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +RL G + FD +A++ +Q GL +G +D L Sbjct: 502 DRLNALGF--NPGTVDGVFDDETRAALRRYQEARGLPVTGYLDQQVL 546 >gi|282856102|ref|ZP_06265386.1| ErfK/YbiS/YcfS/YnhG family [Pyramidobacter piscolens W5455] gi|282586029|gb|EFB91313.1| ErfK/YbiS/YcfS/YnhG family [Pyramidobacter piscolens W5455] Length = 267 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 45/164 (27%), Gaps = 61/164 (37%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRV--------DRQTPILHSRINRIMFNPYWV 245 R++ ++ L E KV V +G+V D +TP + + +I W Sbjct: 104 RWIYIDKAGFRLYLAEGNKVIDSWGVALGKVTGNKAKAGDMRTPEGNFSVQQIQDASSWT 163 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 ++ D KG Sbjct: 164 -----------------------HDFK--DGKGVI------------------------K 174 Query: 306 NAMASTKIEFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 NA I + +H T +P + GC+R+RN Sbjct: 175 NAYGPWFIRLKTGWKGIGIHGTHDPDSIGT---LASEGCIRMRN 215 >gi|271969945|ref|YP_003344141.1| hypothetical protein Sros_8763 [Streptosporangium roseum DSM 43021] gi|270513120|gb|ACZ91398.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 303 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 19/135 (14%) Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + + R+ + ++ + Y + ++ + Sbjct: 166 TGWIRTGDVTLTRTTHRVEVDPEAFRFTVY---DGARVLRSGKVATGRDNTPTPPGRYFF 222 Query: 296 FIFRQDPGKINAMASTKIEFYS-----------RNNTYMHDTPEPILFNNVVRFETSGCV 344 + P + +H T + + GCV Sbjct: 223 TELVRPPDPRGPYGAYAFGLSGFSPTLKSFAGGPGQLAIHGTDDATAIGTR---VSHGCV 279 Query: 345 RVRNIIDLDVWLLKD 359 RV N+ W+ K+ Sbjct: 280 RVANVD--ITWMAKN 292 >gi|154245840|ref|YP_001416798.1| N-acetylmuramoyl-L-alanine amidase [Xanthobacter autotrophicus Py2] gi|154159925|gb|ABS67141.1| N-acetylmuramoyl-L-alanine amidase family 2 [Xanthobacter autotrophicus Py2] Length = 265 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 19/110 (17%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPE---------LPIRPLH------LGNSSVSVQR 113 I + +A ++ A A +D W +P + LG++ V Sbjct: 141 IRADRVLAHSDVAPARKRDPGENFPWGALHAAGIGHLVPPSRVEGGRFFMLGDAGEPVAA 200 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTL 162 L+ L + G L+ A+DA V FQ G+ D++T+ Sbjct: 201 LKAMLALYGY---GIELTDAYDAETADVVAAFQRHFRPAKVDGVADAATI 247 >gi|92117827|ref|YP_577556.1| lytic murein transglycosylase [Nitrobacter hamburgensis X14] gi|91800721|gb|ABE63096.1| Lytic murein transglycosylase [Nitrobacter hamburgensis X14] Length = 407 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VQ ++ RL +G + G AVK FQ R GL G L + Sbjct: 349 AEVQEVQTRLTSAGF--DTGGTDGRVGNDTMKAVKDFQTRVGLPADGYAGLEVLARLRR 405 >gi|218531228|ref|YP_002422044.1| lytic murein transglycosylase [Methylobacterium chloromethanicum CM4] gi|218523531|gb|ACK84116.1| lytic murein transglycosylase [Methylobacterium chloromethanicum CM4] Length = 413 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L+ RL G P G +A++ FQ GL P G D++ L+ + Sbjct: 356 LQTRLAALGY--PVGGADGKIGPKTRAAIRAFQEAKGLVPDGYADAALLDRVRAANAP 411 >gi|297840561|ref|XP_002888162.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334003|gb|EFH64421.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 351 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 89 LSRGGWPELPIRPL---HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 ++ W L H+G + + +L++ G + + + FD ++SA+ + Sbjct: 26 ATQNAWETFS--KLAGCHIGENINGLSKLKQYFRRFGYITGTNNCTDDFDDVLQSAINTY 83 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q L +G +DSSTL + P Sbjct: 84 QKNFNLKVTGKLDSSTLRQIVKP 106 >gi|91788684|ref|YP_549636.1| peptidoglycan-binding domain-containing protein [Polaromonas sp. JS666] gi|91697909|gb|ABE44738.1| Peptidoglycan-binding domain 1 [Polaromonas sp. JS666] Length = 556 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 5/73 (6%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V+ + RL D G DA + + ++ FQ+ GL G + T + Sbjct: 484 QSGPVVEWVAARLTAV-DGTAQAGRP-VLDASLRARLRTFQLAQGLPTDGRLGPLTFMQL 541 Query: 166 NVPV---DLRIRQ 175 N + R+R Sbjct: 542 NRTAGVDEPRLRT 554 >gi|186684696|ref|YP_001867892.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467148|gb|ACC82949.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 234 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTL 162 ++ ++E+LI G G F +AV FQ + L G+V T Sbjct: 170 PLMKGDDIKVVQEKLIGKGFDLGITGADGFFGQATANAVIKFQDQEDLDPVDGIVGDKTK 229 Query: 163 EAMN 166 +A+ Sbjct: 230 KALG 233 >gi|297199334|ref|ZP_06916731.1| peptidoglycan-binding membrane protein [Streptomyces sviceus ATCC 29083] gi|197715335|gb|EDY59369.1| peptidoglycan-binding membrane protein [Streptomyces sviceus ATCC 29083] Length = 72 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDS 159 L G+ V L RL G +D VE AV +Q + G+ + G+ D Sbjct: 2 LRRGSEGAEVVELELRLTQVGLYSRKAA--GHYDEGVEDAVAAYQWQRGVQVAEHGVYDL 59 Query: 160 STLEAMN 166 T E + Sbjct: 60 VTRERLE 66 >gi|238059701|ref|ZP_04604410.1| peptidoglycan-binding protein [Micromonospora sp. ATCC 39149] gi|237881512|gb|EEP70340.1| peptidoglycan-binding protein [Micromonospora sp. ATCC 39149] Length = 444 Score = 46.2 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 10/127 (7%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-------PIRPLHLGNSSVSV 111 D S +P + T ++ + + + G P + R L G Sbjct: 155 PDRTAASRLPGTITA-LPDTGATVSRGRALYAVDGDPVVLLYGKLPAYRMLQPGVEGPDA 213 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + L G + + + AV+ +Q G+ +G V+ + + PV + Sbjct: 214 AQFERNLKALGY--SGFTVDDEYTSATADAVRAWQDDLGVAETGRVEPGRIGYADGPVRV 271 Query: 172 RIRQLQV 178 QL + Sbjct: 272 EGHQLDL 278 >gi|119383559|ref|YP_914615.1| ErfK/YbiS/YcfS/YnhG family protein [Paracoccus denitrificans PD1222] gi|119373326|gb|ABL68919.1| ErfK/YbiS/YcfS/YnhG family protein [Paracoccus denitrificans PD1222] Length = 248 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 58/211 (27%), Gaps = 44/211 (20%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 +R L R + ++V+ A L V +R V VG+ + Sbjct: 51 AVRTAYLTERNRRQRVPYNGPEAAGTIVVDPYARFLYHVLGNGEAMRYGVAVGQAGKN-F 109 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + + R P W ++++ Sbjct: 110 QGTASVGRKHAWPSWTPTANMVRT-----------------------------------Q 134 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G N + S + R+ Y +H T +P ++GC+R+ Sbjct: 135 PELYGPLKGGLRGGVDNPLGSRALYLYKGGRDTMYRIHGTMDPSSIGK---ATSAGCIRL 191 Query: 347 --RNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 ++I+DL + T R E Sbjct: 192 FNQDIMDLFHDIPNGTTVKVRTQAESRALEG 222 >gi|328552256|gb|AEB22748.1| hypothetical protein BAMTA208_02805 [Bacillus amyloliquefaciens TA208] Length = 761 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 7/107 (6%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGW--PELPIR--PLHLGNSSVS-VQRLRERLIISGDL 124 S++T A+ + I G P + + +G++ + V+ L+ L + Sbjct: 173 YSRQTNEALIYALQVEEGIAEPTGTFGPATKSKCPTISMGSTKANFVKLLQYALYCNN-- 230 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 FD + +A+ FQ G+ T ++ V Sbjct: 231 RNPGRFDGIFDENMRTALIDFQRFSAFPADGVAGMQTWASLLVSKGD 277 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAM 165 + L+ L G G + + ++A+K FQ GL + G+ +A+ Sbjct: 81 QIMILQGALYCKGY--NPTGFTGTYGDGTKAAIKKFQTDAGLSNQDGIATPIIFKAL 135 >gi|284041696|ref|YP_003392036.1| peptidoglycan-binding protein [Conexibacter woesei DSM 14684] gi|283945917|gb|ADB48661.1| Peptidoglycan-binding domain 1 protein [Conexibacter woesei DSM 14684] Length = 605 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 95 PELPI-RPLHLG-NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P R L G + V++L + L G + F + AV+ +Q L Sbjct: 125 GTVPAWRTLKEGIDDGEDVRQLEQNLAALGY--DPGTVDDDFTSSTADAVERWQDAWDLK 182 Query: 153 PSGMV 157 +G V Sbjct: 183 ETGEV 187 >gi|260576431|ref|ZP_05844421.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sp. SW2] gi|259021314|gb|EEW24620.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sp. SW2] Length = 243 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Query: 294 PNFIFRQDPGKINAMASTKIEFY-SRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RN 348 ++ G N + + + Y + ++TY +H T + R ++GC+R+ ++ Sbjct: 130 RDYAGGLPGGLSNPLGARAMYLYRNGHDTYFRIHGTSDVTSIG---RATSAGCIRLFNQD 186 Query: 349 IIDL 352 IDL Sbjct: 187 AIDL 190 >gi|89095508|ref|ZP_01168415.1| ErfK/YbiS/YcfS/YnhG protein [Oceanospirillum sp. MED92] gi|89080228|gb|EAR59493.1| ErfK/YbiS/YcfS/YnhG protein [Oceanospirillum sp. MED92] Length = 159 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 Y+H TP+ + GCVR+RN DL + TP Sbjct: 115 IYIHGTPDSEPMGVP---LSHGCVRMRN-TDLLELFDQVTPG 152 >gi|307324793|ref|ZP_07603999.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces violaceusniger Tu 4113] gi|306889675|gb|EFN20655.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces violaceusniger Tu 4113] Length = 391 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ---MRHGLDPSGMVD 158 +G SS + + +RLI G ++ + +Q HG D G+ Sbjct: 232 FRVGRSSPVISAVAKRLIAEGCDSYDTPPGQVWNDAHRRSYAAYQIKRGHHGADADGIPG 291 Query: 159 SSTLEAMNVP 168 T + VP Sbjct: 292 PETWADLRVP 301 >gi|83952512|ref|ZP_00961243.1| hypothetical protein ISM_10181 [Roseovarius nubinhibens ISM] gi|83836185|gb|EAP75483.1| hypothetical protein ISM_10181 [Roseovarius nubinhibens ISM] Length = 215 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 44/164 (26%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 V+ A L ++ +R V + R + P I R P W ++I Sbjct: 78 VDAVARYLYHIQPDGTAMRYGVAIARGNLYEP-GTYSIRRKAKWPTWTPTANMI------ 130 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF-- 315 ++DP + D D G N + S + Sbjct: 131 --KRDPHLYAQH----ADG-----------------------MDAGPNNPLGSRALYLYV 161 Query: 316 YSRNNTY-MHDTPEPILFNNVVRFETSGCVR--VRNIIDLDVWL 356 +R+ +H +P R +SGCVR + +I DL + Sbjct: 162 GNRDTYLRIHGSPNQRSIG--GRA-SSGCVRMVMAHINDLYEHV 202 >gi|288960163|ref|YP_003450503.1| hypothetical protein AZL_a04280 [Azospirillum sp. B510] gi|288912471|dbj|BAI73959.1| hypothetical protein AZL_a04280 [Azospirillum sp. B510] Length = 257 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S V+ +++ L D + + A A+ FQ +GL +G D T+ A+N Sbjct: 143 SHEQVREIQQALNDRTD-GRDIAVDGVWGAGTRRALMRFQRDNGLRATGRADQQTMAALN 201 >gi|296113544|ref|YP_003627482.1| hypothetical protein MCR_1329 [Moraxella catarrhalis RH4] gi|295921238|gb|ADG61589.1| conserved hypothetical protein [Moraxella catarrhalis RH4] gi|326559547|gb|EGE09961.1| hypothetical protein E9G_08341 [Moraxella catarrhalis 7169] gi|326562715|gb|EGE13017.1| hypothetical protein E9K_07151 [Moraxella catarrhalis 103P14B1] gi|326564649|gb|EGE14867.1| hypothetical protein E9M_00831 [Moraxella catarrhalis 46P47B1] gi|326565465|gb|EGE15636.1| hypothetical protein E9O_03999 [Moraxella catarrhalis 12P80B1] gi|326567770|gb|EGE17876.1| hypothetical protein E9Q_05239 [Moraxella catarrhalis BC1] gi|326568593|gb|EGE18664.1| hypothetical protein E9S_07510 [Moraxella catarrhalis BC7] gi|326568718|gb|EGE18788.1| hypothetical protein E9U_08123 [Moraxella catarrhalis BC8] gi|326572587|gb|EGE22576.1| hypothetical protein E9W_09132 [Moraxella catarrhalis CO72] gi|326574183|gb|EGE24131.1| hypothetical protein E9Y_06704 [Moraxella catarrhalis 101P30B1] gi|326575622|gb|EGE25546.1| hypothetical protein EA1_06418 [Moraxella catarrhalis O35E] Length = 166 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 Y+H TP+ + + GCVR+R I ++ WL I+ Sbjct: 123 IYIHGTPDTEPMGRPM---SHGCVRMR-IDEIV-WLFDKVEVGDLVLIQ 166 >gi|332669658|ref|YP_004452666.1| hypothetical protein Celf_1144 [Cellulomonas fimi ATCC 484] gi|332338696|gb|AEE45279.1| hypothetical protein Celf_1144 [Cellulomonas fimi ATCC 484] Length = 547 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL-FQM 147 R L G S V +L++ L G +D S +DA +AV+ +Q Sbjct: 124 TYRSLRAGVSGPDVAQLKQALTSLG-IDVGDAGSATYDARTAAAVRALYQR 173 >gi|284045782|ref|YP_003396122.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283950003|gb|ADB52747.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 274 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 23/97 (23%), Gaps = 20/97 (20%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY-----------SRNNTYMHDT 326 G+ V + P + +H T Sbjct: 180 GRAVSPTPTGRYFVA----DLLRPPNPTGFYGPYALGLSAYSPVYTRFAGGDGQVGIHGT 235 Query: 327 PEPILFNNVVRFETSGCVRVRNI--IDLDVWLLKDTP 361 P + + + GC+RV N L + TP Sbjct: 236 NTPRVLGSD---VSHGCIRVSNATVTRLATLVPLGTP 269 >gi|229087658|ref|ZP_04219785.1| Carboxyl-terminal protease [Bacillus cereus Rock3-44] gi|228695652|gb|EEL48510.1| Carboxyl-terminal protease [Bacillus cereus Rock3-44] Length = 494 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEVTGQLDK 462 Query: 160 STLEAMNVPVDLRIRQLQVNLM 181 T EA+ + +IR + ++ Sbjct: 463 KTAEALQNKIIEKIRSGENDMQ 484 >gi|153871209|ref|ZP_02000438.1| ErfK/YbiS/YcfS/YnhG family protein [Beggiatoa sp. PS] gi|152072323|gb|EDN69560.1| ErfK/YbiS/YcfS/YnhG family protein [Beggiatoa sp. PS] Length = 217 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 36/168 (21%) Query: 208 VENGKVGLRSTVIVGRVD-------RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 + + V + +TP+ RI + + QK M+ R Sbjct: 77 YSDHEEIKTYPVSTSKYGIGSEAGSNKTPLGAHRIKDKIGDG--------AQKGMIFKAR 128 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 + + + N+ G V + W PG + Sbjct: 129 RSTGQIAEMNVE---GAGDLVT-TRIMW--LTGLEQGANSGPGID----------SYQRY 172 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRY 366 Y+H T E + GC+R+ N +I+L + + T R Sbjct: 173 IYIHGTGEENKIGQP---ASHGCIRMYNDDVINLFDLVTEGTEVHIRE 217 >gi|255083567|ref|XP_002508358.1| predicted protein [Micromonas sp. RCC299] gi|226523635|gb|ACO69616.1| predicted protein [Micromonas sp. RCC299] Length = 294 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 V+ L+ L G + FD AVK +Q +HG+ SG Sbjct: 106 MRGDEVKELQRFLQEESFFMHRGGPTGHFDRETRDAVKAWQRKHGVVQSG 155 >gi|89067450|ref|ZP_01154963.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanicola granulosus HTCC2516] gi|89047019|gb|EAR53073.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanicola granulosus HTCC2516] Length = 188 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 52/187 (27%), Gaps = 45/187 (24%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVE-NGKVGLRSTVIV 221 + + IR+ + + + +L +I + +L + + V Sbjct: 26 EIEQDISQTIRRNISSFRSLDWRPYFTSLENGAILCDIQSRALHYWSPDAAIYKLYPTSV 85 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 D T + + + + P W S+ +P Sbjct: 86 PLSDDLTRLGRTEVVHKVEGPEWRPTPSMRAN--------NP------------------ 119 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 DW + PG N + + + + +H T + R ++ Sbjct: 120 -----DWPTYVG--------PGPDNPLGTHALYLSWQY-YRIHGTHDTRKIG---RRSSN 162 Query: 342 GCVRVRN 348 GC+ + N Sbjct: 163 GCIGLYN 169 >gi|85717364|ref|ZP_01048316.1| Lytic murein transglycosylase [Nitrobacter sp. Nb-311A] gi|85695839|gb|EAQ33745.1| Lytic murein transglycosylase [Nitrobacter sp. Nb-311A] Length = 407 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VQ ++ RL +G + G AVK FQ R GL P G L + Sbjct: 349 AEVQEVQTRLTKAGF--DTGGTDGRVGNDTMKAVKDFQTRAGLPPDGYAGLKVLSKLRQ 405 >gi|83858925|ref|ZP_00952447.1| N-acetylmuramoyl-L-alanine amidase [Oceanicaulis alexandrii HTCC2633] gi|83853748|gb|EAP91600.1| N-acetylmuramoyl-L-alanine amidase [Oceanicaulis alexandrii HTCC2633] Length = 245 Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 92 GGWP-ELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 G WP P P G+ +V+ LR+ L G + A+D ++S V FQ R Sbjct: 157 GLWPDPAPAGFAPSAPGDDGEAVEALRQSLFEIGY---GVARTGAYDDALKSVVLAFQRR 213 Query: 149 H 149 Sbjct: 214 F 214 >gi|258655247|ref|YP_003204403.1| transglycosylase [Nakamurella multipartita DSM 44233] gi|258558472|gb|ACV81414.1| Transglycosylase domain protein [Nakamurella multipartita DSM 44233] Length = 317 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + + P P R G++++ +Q +++L G + + ++AV Q Sbjct: 240 VGQPTAPAWPGRQFVQGDTALELQCFQKQLASRGY---PLTGTGYYGPATKTAVVQLQNA 296 Query: 149 HGLDPSGMVDSSTLEAM 165 +G++PSG++ T A Sbjct: 297 NGINPSGILGPKTWAAA 313 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P R G+ S ++ ++++ G + F ++AV Q + GL+ Sbjct: 145 PAYPGRQFSEGDYSEDLKAWQKQMGTRGY---DLVGTGYFGPKTKAAVLDLQAKAGLNVV 201 Query: 155 GMVDSSTL 162 G + T Sbjct: 202 GYIGPKTW 209 >gi|188583441|ref|YP_001926886.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179346939|gb|ACB82351.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 252 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 2/74 (2%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP--SGMVDSSTLEAMNVP 168 V ++ L+ G G A +AV FQ LD G + T+ A+ V Sbjct: 3 VAEIQRALLARGYDLGPSGADNALGRLTIAAVTAFQKAEKLDILYPGTIGPKTIAALGVS 62 Query: 169 VDLRIRQLQVNLMR 182 + + R Sbjct: 63 AAGPVAPPWIAEAR 76 >gi|297824541|ref|XP_002880153.1| matrix metalloproteinase [Arabidopsis lyrata subsp. lyrata] gi|297325992|gb|EFH56412.1| matrix metalloproteinase [Arabidopsis lyrata subsp. lyrata] Length = 336 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VS+ ++ L G L D E A+ +Q GL +G DS TL + + Sbjct: 40 DVSIPEIKRHLQQYGYLPQKNEPD---DVSFEQALARYQKNLGLPITGKPDSDTLSQILL 96 Query: 168 P 168 P Sbjct: 97 P 97 >gi|315498862|ref|YP_004087666.1| n-acetylmuramyl-l-alanine amidase, negative regulator of ampc, ampd [Asticcacaulis excentricus CB 48] gi|315416874|gb|ADU13515.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Asticcacaulis excentricus CB 48] Length = 245 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 15/91 (16%) Query: 80 KAIAFYQDILSRGGW--PELP-----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +A+A G W P +P PL +G++ V L+ L G Sbjct: 147 QALAE----AGHGLWVDPPVPPEGVMGPPLDIGDTGPGVFALQGALGKLGY---DILPGG 199 Query: 133 AFDAYVESAVKLFQMRHGLD-PSGMVDSSTL 162 +DA ++ + FQ G D+ T Sbjct: 200 PYDAETQAIITAFQRHWVQTRIDGKADALTR 230 >gi|328906347|gb|EGG26122.1| YkuG protein [Propionibacterium sp. P08] Length = 792 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 18/147 (12%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPI---ISKETIAQTEKAIAFYQDILS---RGGW- 94 + + + + IP S++ KA+ I G + Sbjct: 154 DPEIRKIQQWLNGRY--WRRSFATLIPTEGHYSRDVQKLLMKALQCEFGIADASVNGNFG 211 Query: 95 ----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-----FDAYVESAVKLF 145 +L L G+S V V+ L + +G + +G+ FD + S ++ F Sbjct: 212 PATRQQLAAHSLKPGDSGVLVELLSAACVFNGAVPSGEGMVHTVFKHEFDDKLASYIRAF 271 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLR 172 Q L + VD +T + V Sbjct: 272 QAFSLLPVTNRVDYATWCQLLVSTGDP 298 >gi|146342507|ref|YP_001207555.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizobium sp. ORS278] gi|146195313|emb|CAL79338.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan binding domain [Bradyrhizobium sp. ORS278] Length = 283 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 92 GGWPELPI----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W + L LG+ V+ L++ L G ++ FD V FQ Sbjct: 192 GHWVQPAAITKGETLKLGSIGDDVKGLQKALAKYGY---GVPITGKFDGLTMEVVTAFQR 248 Query: 148 RHGLD-PSGMVDSSTL 162 + G+ D STL Sbjct: 249 HFRPERVDGIADRSTL 264 >gi|313836153|gb|EFS73867.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2] gi|314927591|gb|EFS91422.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1] gi|314971413|gb|EFT15511.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3] Length = 792 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 18/147 (12%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPI---ISKETIAQTEKAIAFYQDILS---RGGW- 94 + + + + IP S++ KA+ I G + Sbjct: 154 DPEIRKIQQWLNGRY--WRRSFATLIPTEGHYSRDVQKLLMKALQCEFGIADASVNGNFG 211 Query: 95 ----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-----FDAYVESAVKLF 145 +L L G+S V V+ L + +G + +G+ FD + S ++ F Sbjct: 212 PATRQQLAAHSLKPGDSGVLVELLSAACVFNGAVPSGEGMVHTVFKHEFDDKLASYIRAF 271 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLR 172 Q L + VD +T + V Sbjct: 272 QAFSLLPVTNRVDYATWCQLLVSTGDP 298 >gi|302531832|ref|ZP_07284174.1| hypothetical protein SSMG_08214 [Streptomyces sp. AA4] gi|302440727|gb|EFL12543.1| hypothetical protein SSMG_08214 [Streptomyces sp. AA4] Length = 245 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 2/55 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V ++ L G + F E AVK FQ G G V T Sbjct: 188 GEDVAEVQCLLKRHG--RDPGRVDGLFGERTEQAVKDFQRAAGAVVDGKVGPQTW 240 >gi|225181547|ref|ZP_03734989.1| ErfK/YbiS/YcfS/YnhG family protein [Dethiobacter alkaliphilus AHT 1] gi|225167795|gb|EEG76604.1| ErfK/YbiS/YcfS/YnhG family protein [Dethiobacter alkaliphilus AHT 1] Length = 172 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 18/138 (13%) Query: 250 IIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + ++ L+++ Y + GK + S N P + Sbjct: 1 MTRIEINRLMKKLTFYHQGQYYKTYPIAIGKPDTPTPLGEFSVYEKN------PRPHQML 54 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + + F + + +H T P T+GCVR+ N L TP + I Sbjct: 55 GTRWMAFTYQRH-GIHGTFNPWTIGT---AATAGCVRMYNED--VEELFPLTPIGTPVII 108 Query: 369 EEVVKTRKTTPVKLATEV 386 E K VK+ + Sbjct: 109 FE-----KEEKVKIPEHI 121 >gi|149377700|ref|ZP_01895435.1| hypothetical protein MDG893_12425 [Marinobacter algicola DG893] gi|149357985|gb|EDM46472.1| hypothetical protein MDG893_12425 [Marinobacter algicola DG893] Length = 122 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L +G +S D SA+ FQ GL+ SG++D +T +A+ + Sbjct: 15 VALKNALYAAGY--DINNVSPQMDDSTRSALTAFQKDQGLNASGVLDDATKKALGM 68 >gi|293606325|ref|ZP_06688686.1| type III effector HopAJ2 [Achromobacter piechaudii ATCC 43553] gi|292815320|gb|EFF74440.1| type III effector HopAJ2 [Achromobacter piechaudii ATCC 43553] Length = 529 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S +++L+E L G A AV+ Q R L G V L+ Sbjct: 456 PGLSRAEIKQLQEELYGRGYDVGEA--DGIPGAKTRDAVRAEQERRNLPQDGRVGKRILD 513 Query: 164 AMNVPVDLRIRQLQVN 179 A+ +R N Sbjct: 514 ALKADKPDALRARPAN 529 >gi|281201085|gb|EFA75299.1| hypothetical protein PPL_11375 [Polysphondylium pallidum PN500] Length = 889 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 12/65 (18%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG------------LDPSGMVD 158 V+ ++ L L + +D + +AVK FQ L G +D Sbjct: 390 VKEIQAALSHLNYLPLLTKIDGQYDQKLINAVKAFQTDFNKRNNAAKDKDQMLQVEGYID 449 Query: 159 SSTLE 163 +T + Sbjct: 450 QNTFK 454 >gi|84683541|ref|ZP_01011444.1| hypothetical protein 1099457000264_RB2654_19248 [Maritimibacter alkaliphilus HTCC2654] gi|84668284|gb|EAQ14751.1| hypothetical protein RB2654_19248 [Rhodobacterales bacterium HTCC2654] Length = 238 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 70/271 (25%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV----DSST 161 + +L L ++G L + + E+AV +G V T Sbjct: 1 MIGKRIVKLVAGLALAGVLAACETVP------TETAV---------TSNGEVLPFVSPRT 45 Query: 162 LEAMN-------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 L V + + L + R ++V+ A L + Sbjct: 46 LSMYREFDDGQFVVPAVPRQYLSEEVARQYVPYYSPYAEGTIVVDPYAFKLYLISGPNEA 105 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 +R +V VG+ +R+N PYW ++++++ Sbjct: 106 MRYSVGVGKAGFGL-TGEARVNHQKDWPYWTPTANMLRREP------------------- 145 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPIL 331 + + G N + + + R+ Y +H TP P Sbjct: 146 ----------------EKYGPVRGGMEGGLDNPLGARALYLYRGGRDTLYRIHGTPYPWT 189 Query: 332 FNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 E+ GC+R+ ++ I L + T Sbjct: 190 VG---GQESGGCIRMFHQDAIHLAANVENGT 217 >gi|307266055|ref|ZP_07547601.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918924|gb|EFN49152.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 350 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ L +G + + F + V FQ P G+V T A Sbjct: 42 GTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRYKNFVPDGIVGPKTYAA 99 Query: 165 MNV 167 + Sbjct: 100 LET 102 >gi|227495720|ref|ZP_03926031.1| phage integrase [Actinomyces urogenitalis DSM 15434] gi|226834740|gb|EEH67123.1| phage integrase [Actinomyces urogenitalis DSM 15434] Length = 448 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 21/42 (50%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + FD AV +Q+RHGL+ SG VD T EA+ Sbjct: 308 ATARRGPVFDRETVDAVASWQLRHGLEASGRVDRPTWEALTR 349 >gi|91794173|ref|YP_563824.1| peptidoglycan binding domain-containing protein [Shewanella denitrificans OS217] gi|91716175|gb|ABE56101.1| Peptidoglycan-binding domain 1 [Shewanella denitrificans OS217] Length = 572 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ VQ L L L FD +E + FQ +HGL G+ S TL Sbjct: 492 GSHLSQVQWLENNLAKIN--GRQARLMDDFDHELERELMAFQRQHGLKADGIAGSQTLVQ 549 Query: 165 MN 166 +N Sbjct: 550 LN 551 >gi|317132365|ref|YP_004091679.1| ErfK/YbiS/YcfS/YnhG family protein [Ethanoligenens harbinense YUAN-3] gi|315470344|gb|ADU26948.1| ErfK/YbiS/YcfS/YnhG family protein [Ethanoligenens harbinense YUAN-3] Length = 235 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA-YVESAVKLFQMRHGLDPSGMVD 158 R + G V +++RL G D + +D+ AV F+ GL PS + Sbjct: 165 RTIGPGMYGQDVLAVQKRLHDLGYFD--GICNGRYDSWGFHQAVLRFEKDRGLPPSDRIA 222 Query: 159 SSTLEAMN 166 S+ +A+ Sbjct: 223 SAFYKALG 230 Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 16/127 (12%) Query: 255 MMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 ++ ++++ L N GKE G+ Sbjct: 47 ILIQVQENRLSLFKNGKLYRSYSCATGKEDTPSPCGTFQINRKARW-----GEG--FGGY 99 Query: 312 KIEFYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHI 368 + +H T P + GC R+ ++I L + T + Sbjct: 100 FLGLNCPWGNYGIHGTTRPDSVGQPS---SHGCFRMYGKDIRALYSLVPCGTTVLIVNGV 156 Query: 369 EEVVKTR 375 T Sbjct: 157 YGAFGTG 163 >gi|260462601|ref|ZP_05810807.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259031507|gb|EEW32777.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 192 Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 20/139 (14%) Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQK------DMMALLRQDPQYLKDNNIHMIDEKGKE 280 P + + + + P +II + ++ Q +Y G Sbjct: 38 PLPAMGPSLRKTVAFETAEQPGTIIIRKDEKALYLVTRQGQALRYKISVGRDGFGWTGVV 97 Query: 281 VFVEEVDWNSPEPPN--------FIFRQDPGKINAMASTKIEFYSR--NNTY-MHDTPEP 329 + +W PP G N + + + + Y +H T +P Sbjct: 98 KVGAKTEWPQWRPPKEMRARQPELPEMVPAGPYNPLGARALYLSRDGHDTLYRIHGTNDP 157 Query: 330 ILFNNVVRFETSGCVRVRN 348 TSGC R+ N Sbjct: 158 SGVGFDG---TSGCFRLTN 173 >gi|224367146|ref|YP_002601309.1| putative secretion activating protein [Desulfobacterium autotrophicum HRM2] gi|223689862|gb|ACN13145.1| putative secretion activating protein [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + R + G+ + V++L+E L I + F E+ +K +Q +GL+P Sbjct: 181 PSVDYRIVKKGSRGLWVRKLQEALKI--------QVDGRFTGDTEATLKAWQQANGLEPD 232 Query: 155 GMVDSSTLEAMN 166 G+ +T ++ Sbjct: 233 GIAGRNTYRSLG 244 >gi|85707011|ref|ZP_01038100.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. 217] gi|85668452|gb|EAQ23324.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. 217] Length = 196 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 4/83 (4%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L + +K + P + PG N + + + + +H Sbjct: 99 LTKRGYTSVIKKVEGPSWRPTPSMKIRNPEWPDYFPPGPDNPLGTHALYLSWQY-YRVHG 157 Query: 326 TPEPILFNNVVRFETSGCVRVRN 348 T + R ++GC+ + N Sbjct: 158 TGDTRKIG---RRSSNGCIGLYN 177 >gi|167039606|ref|YP_001662591.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter sp. X514] gi|300915144|ref|ZP_07132459.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307725068|ref|YP_003904819.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|166853846|gb|ABY92255.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X514] gi|300888868|gb|EFK84015.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307582129|gb|ADN55528.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] Length = 422 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ L +G + + F + V FQ L P G+V A Sbjct: 47 GTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDGIVGPKIYAA 104 Query: 165 MNV 167 + Sbjct: 105 LET 107 >gi|71066184|ref|YP_264911.1| hypothetical protein Psyc_1629 [Psychrobacter arcticus 273-4] gi|71039169|gb|AAZ19477.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 173 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 Y+H TP+ + GCVR+RN II+L + Sbjct: 126 IYIHGTPDSEPMGIP---LSHGCVRMRNQDIIELFEQV 160 >gi|229020392|ref|ZP_04177148.1| Carboxyl-terminal protease [Bacillus cereus AH1273] gi|228740927|gb|EEL91169.1| Carboxyl-terminal protease [Bacillus cereus AH1273] Length = 263 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 174 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEIEATGQLDK 231 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 232 KTAEAIQNKIIEKIRS 247 >gi|229026622|ref|ZP_04182964.1| Carboxyl-terminal protease [Bacillus cereus AH1272] gi|228734655|gb|EEL85307.1| Carboxyl-terminal protease [Bacillus cereus AH1272] Length = 494 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEIEATGQLDK 462 Query: 160 STLEAMNVPVDLRIRQ 175 T EA+ + +IR Sbjct: 463 KTAEAIQNKIIEKIRS 478 >gi|163748159|ref|ZP_02155465.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] gi|161378564|gb|EDQ03027.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] Length = 166 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 18/162 (11%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + + V NI + + ++ LR+ I+ +D + S + + Sbjct: 4 TSEGLAAPAVRSNISGFRVASWQDHFDNLRNGAILCDIDSRAVQFWSEDENVYKLYPSSV 63 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + + L I K P + PG N Sbjct: 64 PLT--------------EELTRRGYTEIVRKVDGPSWRPTPSMKERNPEWPDFVGPGPDN 109 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + + + +H T + R ++GC+ + N Sbjct: 110 PLGTHALYLSWQY-YRVHGTGDTRKIG---RQSSNGCIGLYN 147 >gi|209518462|ref|ZP_03267284.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. H160] gi|209501095|gb|EEA01129.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. H160] Length = 362 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V +++ +L G P A+K FQ GL +G DS+T+ A++ Sbjct: 308 VAQMQAKLNALGF--PVGTPDGHMGNRTRRALKYFQKSQGLPQTGEPDSATVAALSQ 362 >gi|304316029|ref|YP_003851174.1| peptidoglycan-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777531|gb|ADL68090.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 418 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V +L+ L G + + F V FQ L G+V S T A Sbjct: 43 GTYGTDVLKLQSILNNIGF--DTGIIDGIFGNNTLKGVLNFQKAENLVADGIVGSKTYSA 100 Query: 165 MN 166 + Sbjct: 101 IQ 102 >gi|222629200|gb|EEE61332.1| hypothetical protein OsJ_15450 [Oryza sativa Japonica Group] Length = 367 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L +G V+ ++E L G + + +F + E AVK +Q + SG++ Sbjct: 162 RTLRVGAEGEDVRAMQEALEKLGYYSGEEDMEFSSFSSGTERAVKTWQATVRVSESGIMT 221 Query: 159 SSTLE 163 S L+ Sbjct: 222 SDLLD 226 >gi|163745084|ref|ZP_02152444.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] gi|161381902|gb|EDQ06311.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] Length = 183 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 59/193 (30%), Gaps = 47/193 (24%) Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLR 216 D++T ++ ++ ++ + VLV+I + ++ E+ V Sbjct: 17 DATTEAERDLTDAVKRNVSSFRMLDWRPYFSNTRNG-AVLVDIDSRAVHYWSEDQSVYKL 75 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 V + T + I + + P W S+ L+++P++ Sbjct: 76 YPSSVPLTEDLTRRGRTSIIKKVEGPSWRPTPSM--------LKRNPEW----------- 116 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNV 335 PG N + + + Y +H T + Sbjct: 117 --------------------PPYVGPGPDNPLGTHALYLS--WTYYRIHGTHDTRKIG-- 152 Query: 336 VRFETSGCVRVRN 348 R ++GC+ + N Sbjct: 153 -RKSSNGCIGLYN 164 >gi|115459412|ref|NP_001053306.1| Os04g0514400 [Oryza sativa Japonica Group] gi|38345688|emb|CAE01911.2| OSJNBb0070J16.4 [Oryza sativa Japonica Group] gi|113564877|dbj|BAF15220.1| Os04g0514400 [Oryza sativa Japonica Group] gi|116310834|emb|CAH67621.1| OSIGBa0140J09.2 [Oryza sativa Indica Group] gi|215697528|dbj|BAG91522.1| unnamed protein product [Oryza sativa Japonica Group] gi|218195210|gb|EEC77637.1| hypothetical protein OsI_16629 [Oryza sativa Indica Group] Length = 367 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L +G V+ ++E L G + + +F + E AVK +Q + SG++ Sbjct: 162 RTLRVGAEGEDVRAMQEALEKLGYYSGEEDMEFSSFSSGTERAVKTWQATVRVSESGIMT 221 Query: 159 SSTLE 163 S L+ Sbjct: 222 SDLLD 226 >gi|254556733|ref|YP_003063150.1| carboxy-terminal processing proteinase [Lactobacillus plantarum JDM1] gi|254045660|gb|ACT62453.1| carboxy-terminal processing proteinase [Lactobacillus plantarum JDM1] Length = 492 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +V+ ++ L G ++ F SAVK +Q L +G VD TL + Sbjct: 412 SNVKTFQKYLQALGYFK--GTVNGYFGDSTTSAVKQYQKHAKLTVNGKVDKQTLTKIETE 469 Query: 169 VDLRI 173 + +I Sbjct: 470 LANKI 474 >gi|300767464|ref|ZP_07077376.1| carboxy-terminal processing protease CtpA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180676|ref|YP_003924804.1| carboxy-terminal processing protease CtpA [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495283|gb|EFK30439.1| carboxy-terminal processing protease CtpA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046167|gb|ADN98710.1| carboxy-terminal processing protease CtpA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 492 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +V+ ++ L G ++ F SAVK +Q L +G VD TL + Sbjct: 412 SNVKTFQKYLQALGYFK--GTVNGYFGDSTTSAVKQYQKHAKLTVNGKVDKQTLTKIETE 469 Query: 169 VDLRI 173 + +I Sbjct: 470 LANKI 474 >gi|15895771|ref|NP_349120.1| SpoIID-like domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15025528|gb|AAK80460.1|AE007749_7 SpoIID-like domain containing protein; peptidoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325509921|gb|ADZ21557.1| SpoIID-like domain protein containing protein [Clostridium acetobutylicum EA 2018] Length = 1042 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 2/106 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL+ G +S V L+ LI G S + +S V Q ++ L + Sbjct: 878 PLSAALPLNYGMTSGDVTNLQNALIYLGYSISSAT--GYYGTQTKSVVSSIQSQNSLPVT 935 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 G VD++TL +N + + +N + + L N Sbjct: 936 GNVDTATLYVINSMLATKAGVKLLNFSTLPLVYGTTSSDTVNLQNT 981 >gi|28378519|ref|NP_785411.1| carboxy-terminal processing proteinase [Lactobacillus plantarum WCFS1] gi|28271355|emb|CAD64260.1| carboxy-terminal processing proteinase [Lactobacillus plantarum WCFS1] Length = 492 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +V+ ++ L G ++ F SAVK +Q L +G VD TL + Sbjct: 412 SNVKTFQKYLQALGYFK--GTVNGYFGDSTTSAVKQYQKHAKLTVNGKVDKQTLTKIETE 469 Query: 169 VDLRI 173 + +I Sbjct: 470 LANKI 474 >gi|328871644|gb|EGG20014.1| hypothetical protein DFA_07130 [Dictyostelium fasciculatum] Length = 434 Score = 45.8 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 23/157 (14%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI 99 + + S +D F+ + I + I T +I P L Sbjct: 286 LGDDRSSGEDDMFETAPEDFEEPISFLASPFLSQLIDDTNN--QNSDNI------PTLSK 337 Query: 100 RP----------LHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 L G S ++ L L+ G ++ + + E A+K F Sbjct: 338 SKRHKLSILMDSLKEGVKSSSPPEAISVLNYSLLFIGYME-DTLSKEMYTSNTEFAIKKF 396 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 Q+ +G +G+ D T++++ V + R Sbjct: 397 QLDNGFPETGIADFPTMKSILYKVKNSPVNILKKKER 433 >gi|154245163|ref|YP_001416121.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] gi|154159248|gb|ABS66464.1| ErfK/YbiS/YcfS/YnhG family protein [Xanthobacter autotrophicus Py2] Length = 223 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV- 346 + G+ N + + Y + +H T EP +SGC+R+ Sbjct: 146 ARYGPYAAGLPGGETNPLGPRALYLYDGDRDTLFRIHGTIEPWSIGQ---QVSSGCIRLL 202 Query: 347 -RNIIDLDVWLLKDT 360 ++IIDL + T Sbjct: 203 NQDIIDLYERVPLGT 217 >gi|159184494|ref|NP_353866.2| hypothetical protein Atu0844 [Agrobacterium tumefaciens str. C58] gi|159139803|gb|AAK86651.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 302 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 98/327 (29%), Gaps = 80/327 (24%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQ 112 D D+ + P+ + +++ + PELP + G S Sbjct: 32 DTTRMDPDVFVRETAPVFNFNSVSSNRQ--------------PELPPQ---PGQLSTRPP 74 Query: 113 RL-RERLIISGDLDP------SKGLSVAFDAYVESAVKLFQ---MRHGLDPSG----MVD 158 L R R P ++ V Q M +GL S ++ Sbjct: 75 DLFRTRFHQE-YGPPVRGQGLQAPQVQGYN------VPQAQGQTMAYGLPVSNPLHRVMY 127 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + + ++ +R + + ++V+ L V++G +R Sbjct: 128 GPIRDEDRSLPAIPYGRIDPRYLRQEVSYQTAEAPGTIVVDTRQHFLYLVQSGGKAIRYG 187 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V +GR D +I P W P ++++ Sbjct: 188 VGLGR-DGYAWSGRGKIQWKAKWPRWTPPDEMVKRQ------------------------ 222 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNV 335 E ++ PG N + + + ++ Y +H TP+ Sbjct: 223 ----PELTSISAANGGMT-----PGLNNPLGARALYIFKDGKDTLYRVHGTPDWQSVGK- 272 Query: 336 VRFETSGCVRV--RNIIDLDVWLLKDT 360 +SGCVR+ +++IDL + + Sbjct: 273 --ATSSGCVRMLNQDVIDLYERVPQGA 297 >gi|114704710|ref|ZP_01437618.1| TPR repeat [Fulvimarina pelagi HTCC2506] gi|114539495|gb|EAU42615.1| TPR repeat [Fulvimarina pelagi HTCC2506] Length = 516 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 L+ RL +GD A++ FQ RHG++PSG++ L + D Sbjct: 49 LQIRLAWTGDY--EGEFDGIIGPRSLRAIRDFQARHGMEPSGIISDDMLAQLVSKSDSIQ 106 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVN 199 L + + + +V+ Sbjct: 107 DSLGIAFADDALTGARMLIPFNRVVD 132 >gi|153810528|ref|ZP_01963196.1| hypothetical protein RUMOBE_00909 [Ruminococcus obeum ATCC 29174] gi|149833707|gb|EDM88788.1| hypothetical protein RUMOBE_00909 [Ruminococcus obeum ATCC 29174] Length = 442 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQM-RHG-LDP 153 + + LG++ SV L+E LI G + S D A+K +Q R G L+ Sbjct: 368 PKLVKLGSTGTSVLLLQEILIARGFKGKNGKTLTLSRKADENTIYALKTYQKSRKGVLEA 427 Query: 154 SGMVDSSTLEAMNV 167 G+ T + + Sbjct: 428 DGIAGEKTWKDLIA 441 >gi|329890511|ref|ZP_08268854.1| N-acetylmuramoyl-L-alanine amidase amiD [Brevundimonas diminuta ATCC 11568] gi|328845812|gb|EGF95376.1| N-acetylmuramoyl-L-alanine amidase amiD [Brevundimonas diminuta ATCC 11568] Length = 253 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMV 157 PL G+ + V LR L G G +D V+ FQ D G+ Sbjct: 172 GAPLSPGDEGLGVIVLRSGLHRLGYGVQPGGA---YDEETRLTVEAFQRHWRPDRVDGIA 228 Query: 158 DSSTLEAM 165 D T + Sbjct: 229 DGETRARL 236 >gi|163851109|ref|YP_001639152.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163662714|gb|ABY30081.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 264 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 46/170 (27%), Gaps = 42/170 (24%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + ++V+ L V LR V VGR +R+ R Sbjct: 80 RQEVAYPRAEPPGTLVVDPGRKFLYLVRENGRALRYGVGVGRAG-LAWSGSARVGRKAEW 138 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +I ++ D G W + Sbjct: 139 PRWTPTAEMIAREP-------------------DRNG--------PWRNGMAG------- 164 Query: 302 PGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + +H T EP +SGC+R+ N Sbjct: 165 -GLGNPLGPRALYLFEGPRDTLYRIHGTTEPQTIGTD---VSSGCIRMFN 210 >gi|260907624|ref|ZP_05915946.1| putative phage integrase [Brevibacterium linens BL2] Length = 401 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 97 LPIRPLHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + R L S +V+RL++ L +S S + +AV+ Q +GL + Sbjct: 258 VSNRALKPAVELASGAVERLQDALSVSEY---SGDFFHVYGPDTVAAVERVQRENGLSVT 314 Query: 155 GMVDSSTLEAMNVPVDLR 172 G D++T EA+ + Sbjct: 315 GRADAATREAIGLDDAQH 332 >gi|118580186|ref|YP_901436.1| peptidoglycan binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502896|gb|ABK99378.1| Peptidoglycan-binding domain 1 protein [Pelobacter propionicus DSM 2379] Length = 564 Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 3/79 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + L+ L +G + + SAV+ FQ G+ + T Sbjct: 488 LVPGERRKELHTLQRMLKQAGCYRQ--AIDGVYSKATISAVRRFQRSQGIPTNDSGGELT 545 Query: 162 LEAMNV-PVDLRIRQLQVN 179 L ++ L N Sbjct: 546 LALLSRLDAAQMAPSLGRN 564 >gi|171913001|ref|ZP_02928471.1| hypothetical protein VspiD_17515 [Verrucomicrobium spinosum DSM 4136] Length = 201 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 36/194 (18%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + G +++ + E K+ + V G+ TP RI + Sbjct: 43 YHWEGDGVQGEPSIVIYLDTQKAEFYRGKKLVGWTYVATGKPSHPTPSGKFRIIEKTPDK 102 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 + ++ D ++D E + + P Q Sbjct: 103 ISNLYGKLLDVDG----------------KVVDSDFNLSKEEVPEGHQFSPARMPMFQ-- 144 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 + + +H P P + GC+RV + +T Sbjct: 145 -----------RLTN-DGVGLHVGPIP----RPGATASHGCIRV--PRYMAQKFFANTAI 186 Query: 363 WSRYHIEEVVKTRK 376 + I +K Sbjct: 187 GTPVTILAKSPDKK 200 >gi|3128477|gb|AAC31167.1| metalloproteinase [Arabidopsis thaliana] Length = 341 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VS+ ++ L G L +K D E A+ +Q GL +G DS TL + + Sbjct: 47 DVSIPEIKRHLQQYGYLPQNKESD---DVSFEQALVRYQKNLGLPITGKPDSDTLSQILL 103 Query: 168 P 168 P Sbjct: 104 P 104 >gi|303241052|ref|ZP_07327562.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] gi|302591477|gb|EFL61215.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] Length = 143 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 7/80 (8%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG+P + G+ V V L++ L G + + F + V FQ +G Sbjct: 60 NGGYPVVA-----FGSVGVYVLILQDALRAIGF--TTTDIDGYFGPITQRTVINFQNSYG 112 Query: 151 LDPSGMVDSSTLEAMNVPVD 170 L G+V T E + Sbjct: 113 LVADGIVGCLTWETLTSNAA 132 >gi|15225398|ref|NP_182030.1| matrix metalloproteinase [Arabidopsis thaliana] gi|26452204|dbj|BAC43190.1| putative metalloproteinase [Arabidopsis thaliana] gi|31711730|gb|AAP68221.1| At2g45040 [Arabidopsis thaliana] gi|330255405|gb|AEC10499.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana] Length = 342 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VS+ ++ L G L +K D E A+ +Q GL +G DS TL + + Sbjct: 47 DVSIPEIKRHLQQYGYLPQNKESD---DVSFEQALVRYQKNLGLPITGKPDSDTLSQILL 103 Query: 168 P 168 P Sbjct: 104 P 104 >gi|307946200|ref|ZP_07661535.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307769864|gb|EFO29090.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 301 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAMNV 167 + L+ L G S + A++ FQ H L G+ +T + Sbjct: 172 DDIATLQTSLKQVGF--DSGSIDGVLGDRTRDAIRAFQRSHPPLVVDGIAGPATRTRLQR 229 Query: 168 PVDLR 172 + R Sbjct: 230 QLAKR 234 >gi|254429304|ref|ZP_05043011.1| ErfK/YbiS/YcfS/YnhG superfamily [Alcanivorax sp. DG881] gi|196195473|gb|EDX90432.1| ErfK/YbiS/YcfS/YnhG superfamily [Alcanivorax sp. DG881] Length = 156 Score = 45.4 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y+H TP+ + GC+R+RN Sbjct: 112 IYIHGTPDSESMGTP---ASHGCIRMRN 136 >gi|302833708|ref|XP_002948417.1| hypothetical protein VOLCADRAFT_103883 [Volvox carteri f. nagariensis] gi|300266104|gb|EFJ50292.1| hypothetical protein VOLCADRAFT_103883 [Volvox carteri f. nagariensis] Length = 488 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 6/91 (6%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLD 152 WP L G+ V ++ L SG + F +A+K FQ + Sbjct: 370 WP-----VLMDGDGGREVHAMQVALANSGFYCGEDDMRWWQFGDATLTALKYFQSCSSIP 424 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 SG+ D T A+ V L ++ Sbjct: 425 ESGVCDERTWRALLGREASPADLYLVRLNKV 455 Score = 43.5 bits (101), Expect = 0.062, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLD 152 P P L G+ + RL L G + F +AV FQ L Sbjct: 234 PTDPPPELVQGDDDIYWLSRLHTCLEQRGFFPGDDDMENWFFGEGTLAAVLSFQASERLP 293 Query: 153 PSGMVDSSTLEAM 165 +G+VD T A+ Sbjct: 294 ETGVVDRPTWTAL 306 >gi|291446759|ref|ZP_06586149.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] gi|291349706|gb|EFE76610.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] Length = 417 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R + G+ V +L L G + + E+AVK +Q + Sbjct: 167 GPVPAFREMKTGHRGSDVLQLERNLRDLGY-GAGLHVDTEYGEDTEAAVKRWQKHLNRET 225 Query: 154 SGMVDSS 160 +G V Sbjct: 226 TGRVGRG 232 >gi|253573319|ref|ZP_04850662.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846847|gb|EES74852.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 486 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 43/311 (13%), Positives = 81/311 (26%), Gaps = 109/311 (35%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 A + IP +E++ A+ Y+ + G WP L Sbjct: 241 DSAALQERARHWIPQ--QESLGVLASAMIHYKQ--ANGVWP----------------ASL 280 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVK--LFQ-MRHGLDPSGMVDSSTLEAMNVPVDL 171 ++ + G + D + A K L Q R G +G ++ + A + Sbjct: 281 QD---LVGPYPDNWIAGT--DPTMVRAFKPLLAQLKREGTGATGNANAPEVLAEGMAPGQ 335 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R ++V+ +L V + V +G +TP Sbjct: 336 R---------------PFFAEPYEMIVDTKTHTLAVVSGNVLIRSYPVGLG--GSRTPEG 378 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 I+ + NP +D + + D Sbjct: 379 TFVISEKVINPNG----------------RDSGEFGSRGMQLSDTN-------------- 408 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 +H T EP + GC+R+ +++ Sbjct: 409 -----------------------------YAIHGTNEPDSIGKDE---SLGCIRMGKKDV 436 Query: 350 IDLDVWLLKDT 360 +L + K T Sbjct: 437 EELFDLVPKGT 447 >gi|209524890|ref|ZP_03273436.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209494769|gb|EDZ95078.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 606 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +++ RLI G L+P + F +A + FQ + SG++ S T + + +R Sbjct: 114 QIQTRLIDLGLLEP--PVDGIFGPLSTAAFRRFQELMNISESGILGSETAKKLIETTTIR 171 Query: 173 IRQLQVN 179 +++ Sbjct: 172 RENMRLQ 178 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-----V 167 +++ RLI G LDP F +A K FQ + SG++ + T + + Sbjct: 27 QIQTRLIDLGLLDPPA--DGIFGPLSTAAFKRFQELMNISESGILATETAQKLLDTTTMR 84 Query: 168 PVDLRIRQLQVNLMRI 183 P ++R+ +R Sbjct: 85 PPNMRLEDFLGTNIRY 100 >gi|78485644|ref|YP_391569.1| ErfK/YbiS/YcfS/YnhG [Thiomicrospira crunogena XCL-2] gi|78363930|gb|ABB41895.1| ErfK/YbiS/YcfS/YnhG familiy protein [Thiomicrospira crunogena XCL-2] Length = 162 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 Y+H TP+ + GC+R+RN ++ L + T Sbjct: 118 IYIHGTPDTEPMGVPK---SHGCIRMRNQDVMALFDLIPVGTE 157 >gi|319791584|ref|YP_004153224.1| peptidoglycan-binding domain 1 protein [Variovorax paradoxus EPS] gi|315594047|gb|ADU35113.1| Peptidoglycan-binding domain 1 protein [Variovorax paradoxus EPS] Length = 238 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V+RL+E L + P + + + AV+ Q + L G Sbjct: 3 TLRQGSRGADVRRLQEALNRTLRPGPGLVIDGDYGPFTRMAVRRLQAANWLVEDGEAG 60 >gi|308050969|ref|YP_003914535.1| peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] gi|307633159|gb|ADN77461.1| Peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] Length = 512 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + ++S VQ L RL L FD +E+ ++ FQ + GLD G+ Sbjct: 433 PGLIGPDSASAQVQWLENRLAQVQ--QRPARLLSGFDRQLEADLRGFQRQQGLDIDGLAG 490 Query: 159 SSTLEAMN 166 TLE ++ Sbjct: 491 RQTLERLS 498 >gi|254465328|ref|ZP_05078739.1| lytic murein transglycosylase [Rhodobacterales bacterium Y4I] gi|206686236|gb|EDZ46718.1| lytic murein transglycosylase [Rhodobacterales bacterium Y4I] Length = 443 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 RG WP R L S + L++RL +G ++G+ AV+ +Q+ +G Sbjct: 375 RGDWPR-SDRALT---RSER-EELQQRLTAAGF--DTEGVDGRIGPKTIGAVRAYQVANG 427 Query: 151 LDPSGMVDSSTLEAMN 166 L G L+ + Sbjct: 428 LTADGYASPRLLQRLR 443 >gi|255083362|ref|XP_002504667.1| predicted protein [Micromonas sp. RCC299] gi|226519935|gb|ACO65925.1| predicted protein [Micromonas sp. RCC299] Length = 497 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRG-GWPELPIRPLHLGNSSVSVQRLRERLIISGDLD 125 P+ E +K + I + G WP L L + + V +L L +G Sbjct: 354 APVWGDEQNRPIDKVSEEFTQIATSGEKWP-----VLRLEDGGMEVHKLHVLLDSAGYYS 408 Query: 126 PSKGLSV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + +F E+A+ FQ +GL +G+ T +A+ Sbjct: 409 GEEDMEWWSFGGSTENALGTFQASNGLPDTGLTCLLTWKAL 449 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 114 LRERLIISGDLDPSKGLSVAF-DAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ L +G + + + + A+ FQ GL G VD T A+ Sbjct: 232 IQSSLNEAGFWAGEEDEADMYFGPSTQEAMCYFQASVGLPEVGYVDPDTWRAL 284 >gi|170745521|ref|YP_001766978.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170659122|gb|ACB28176.1| Peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 386 Score = 45.4 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 7/146 (4%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLG 105 + + F ++ P S+ T + ++ + + + R P PL Sbjct: 207 GLTDSIFSAGHGTGPQAANAARPQPSQATGSGGDRQVDNQRIAVERTDSP---GEPLS-- 261 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ V+++++ L G + L ++ A FQ GL+P+G + ++ L + Sbjct: 262 MNADGVRQIQQVLNQRGY--AAGHLDGNWNNDTTIAATHFQQAQGLEPTGTLTTNLLATV 319 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKM 191 + R + R Sbjct: 320 GMSRWERGEFMGGMTARANTPGNPNP 345 Score = 40.4 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 SS V+++++ L G + + ++ +A + FQ ++P+G + Sbjct: 48 SSAGVRQIQQALTQKGY--STGNVDGRWNPQTAAAARSFQQAQNMEPTGSLT 97 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++++++ L G + + + A + +Q H L+P+G ++ + A+ + Sbjct: 152 AGIRQIQQALNQQGW--NTGQVDGRWGPATVQAARSYQQAHALEPTGRLEVGLVAALGLT 209 >gi|222056276|ref|YP_002538638.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. FRC-32] gi|221565565|gb|ACM21537.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. FRC-32] Length = 264 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 10/78 (12%) Query: 98 PIRPLHLGNSSVS-VQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHG--- 150 P R + +G V+ L+ RL + G + ++ VKLFQ R+ Sbjct: 4 PGRIIKVGEQDAVIVKALKLRLNKVLGSDPALRLDPDDPNYGPKMKQMVKLFQARNVDAA 63 Query: 151 ---LDPSGMVDSSTLEAM 165 L G V S T ++ Sbjct: 64 GRPLKQDGEVGSLTWASL 81 >gi|325964353|ref|YP_004242259.1| peptidoglycan binding protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470440|gb|ADX74125.1| putative peptidoglycan binding protein [Arthrobacter phenanthrenivorans Sphe3] Length = 734 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 104 LGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +++ L G L + D E A++ FQ L +G+ D +T Sbjct: 20 PGERKPGFNKVQSYLERFGYLGATTAREIGVLDDPTEGALRSFQEFFHLPVTGVFDDATR 79 Query: 163 EAMNVP 168 EAM P Sbjct: 80 EAMMQP 85 >gi|154484779|ref|ZP_02027227.1| hypothetical protein EUBVEN_02497 [Eubacterium ventriosum ATCC 27560] gi|149734627|gb|EDM50544.1| hypothetical protein EUBVEN_02497 [Eubacterium ventriosum ATCC 27560] Length = 421 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G S V +++E+L I P F +++V+ FQ L + Sbjct: 334 PGYDLTIGASGQKVMQMQEQLDTIARVYTAIPRVSADGVFGEGTQASVRAFQKIFDLPQT 393 Query: 155 GMVDSSTLEAMNV 167 G VD ST ++ Sbjct: 394 GEVDFSTWYKISQ 406 >gi|146329639|ref|YP_001209845.1| hypothetical protein DNO_0956 [Dichelobacter nodosus VCS1703A] gi|146233109|gb|ABQ14087.1| hypothetical protein DNO_0956 [Dichelobacter nodosus VCS1703A] Length = 478 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 32/188 (17%) Query: 85 YQDILSRGG------WPELPIRPLHLGNSSVSVQRLRERLIISG--DLDPSKG-LSVAFD 135 D+ + GG W + + G S ++ RLI +G LD G + ++ Sbjct: 62 LYDLAAMGGASELQQW-LVKQKVAKEGEYSSALI----RLIQTGLRFLDFDAGVIDGVYN 116 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +S +K FQ +G + + L N + +++Q + + +G + Sbjct: 117 QDTQSGIKAFQKSQKQKTTGKITADWLRIFNRRLTAKVQQRLNHFGYAAGGADGIIGKKT 176 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR--INRIMFNPYWVIPRSIIQK 253 I ++ T I +IM + I + Sbjct: 177 QEALIALRKQY----------------QLPWLTYSFIDDRLIYQIMLTENENNKKQIEKN 220 Query: 254 DMMALLRQ 261 ++A ++ Sbjct: 221 QLIAKKQR 228 >gi|116251063|ref|YP_766901.1| hypothetical protein RL1296 [Rhizobium leguminosarum bv. viciae 3841] gi|115255711|emb|CAK06792.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 268 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 71/227 (31%), Gaps = 46/227 (20%) Query: 144 LFQMRHGLDPSG----MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 F +GL + + + + + ++Q +R + + V+++ Sbjct: 75 QFHQTYGLPVTNPVHMAMYGQQRDEDFTLPAIPVSRVQPQFLRQEVDYQTTERPGTVVID 134 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L VE +R V +GR D I P W +M++ Sbjct: 135 TKTHFLYFVEGNGKAMRYGVGLGR-DGYAWSGRGVIQWKQKWPRWTP-----SVEMVSRQ 188 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YS 317 + + +N +PG +N + + + Sbjct: 189 PEVRPFGAENGGM----------------------------NPGLMNPLGARAMYIFKDG 220 Query: 318 RNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 ++ Y +H TP+ +SGCVR+ +++IDL + Sbjct: 221 QDTLYRVHGTPDWQSIGK---ATSSGCVRMLNQDVIDLYDRVPARAE 264 >gi|90418812|ref|ZP_01226723.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Aurantimonas manganoxydans SI85-9A1] gi|90336892|gb|EAS50597.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Aurantimonas manganoxydans SI85-9A1] Length = 234 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 63/198 (31%), Gaps = 45/198 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + ++ R + V+V+ V+ G +R V VGR Sbjct: 67 PAIDLSRVDPIYYRQEVADPTGEKPGTVVVDTANKFAYVVQPGGRAMRYGVGVGREG-FG 125 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 ++I P W P K+M+A + QY Sbjct: 126 WSGRAKIQWKKKWPTWTPP-----KEMIARKPELAQYADGM------------------- 161 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 +PG N + + + ++ Y +H +PE +SGC+R Sbjct: 162 ------------EPGIGNPLGARALYLFQNGKDTLYRLHGSPEYWTIGTSG---SSGCIR 206 Query: 346 V--RNIIDLDVWLLKDTP 361 ++IIDL + +P Sbjct: 207 FMNQDIIDLYDRVPSGSP 224 >gi|258511360|ref|YP_003184794.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478086|gb|ACV58405.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 300 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 50/169 (29%) Query: 104 LGNSSVSVQRLRERLIISGDLD------------------------------------PS 127 LG+ + L L G L Sbjct: 61 LGDRGEPIWALHVVLAELGYLPCRYHAVIPTDRLYAQNWEHAPLGYWTWNSPDVPPELER 120 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + + AV F+ HGL G + + + L + + ++ Sbjct: 121 AWNPDQYTEITKGAVMRFEADHGLRVDGYTGPRVRRTLEIALALHLT----ATQPYRLVM 176 Query: 188 EQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRI 235 + +IP L E+G+ V ++ G T I Sbjct: 177 VDQ--------SIPQ-QLRVWEDGRGVIFQTACSTGVPAAPTQPGVHAI 216 >gi|163744878|ref|ZP_02152238.1| hypothetical protein OIHEL45_04805 [Oceanibulbus indolifex HEL-45] gi|161381696|gb|EDQ06105.1| hypothetical protein OIHEL45_04805 [Oceanibulbus indolifex HEL-45] Length = 392 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G S +++ L+ +L G + + +AV+ Q R G+ G Sbjct: 328 AGNPQPGLSGEAMKTLQRKLQSMGY--DVGDVDGILGSGTRAAVRAEQERLGMPVDGWPT 385 Query: 159 SSTLEAM 165 S L + Sbjct: 386 PSLLNQL 392 >gi|56964826|ref|YP_176557.1| carboxyl-terminal processing protease [Bacillus clausii KSM-K16] gi|56911069|dbj|BAD65596.1| carboxyl-terminal processing protease [Bacillus clausii KSM-K16] Length = 484 Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 2/79 (2%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S + ++ L G FD E A+ FQ H L +G ++ T + Sbjct: 397 QVSDQIGNAQKMLTGLGF--DVGRDDGYFDEKTEEAIIAFQQSHDLQANGELNEETAGKL 454 Query: 166 NVPVDLRIRQLQVNLMRIK 184 + IR + + Sbjct: 455 QEDILSHIRDTANDEQLKR 473 >gi|15895879|ref|NP_349228.1| cell wall hydrolase [Clostridium acetobutylicum ATCC 824] gi|15025646|gb|AAK80568.1|AE007759_6 Cell wall hydrolase (autolysin), family 25 of glycosyl hydrolases; peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325510031|gb|ADZ21667.1| Cell wall hydrolase (autolysin), family 25 of glycosyl hydrolase [Clostridium acetobutylicum EA 2018] Length = 325 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S +V+ ++++L L + A +A+K FQ GL G+ T+ A+ Sbjct: 199 SDTVKIIQQQLNTL--LKKGLIVDGISGASTTAAIKEFQGAMGLAQDGIWGPKTVAAVT 255 Score = 43.5 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L + E+ VK++Q HGL+ G+V + T + Sbjct: 279 YRVGGKLDGVYGPQTEANVKVWQSNHGLNADGIVGNDTWNKL 320 >gi|93006686|ref|YP_581123.1| ErfK/YbiS/YcfS/YnhG [Psychrobacter cryohalolentis K5] gi|92394364|gb|ABE75639.1| ErfK/YbiS/YcfS/YnhG [Psychrobacter cryohalolentis K5] Length = 171 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H TP+ + + GC+R+RN II+L + + T Sbjct: 126 IYIHGTPDSEPMSVP---LSHGCIRMRNQDIIELFEQIEEGT 164 >gi|149914813|ref|ZP_01903343.1| lytic murein transglycosylase [Roseobacter sp. AzwK-3b] gi|149811606|gb|EDM71441.1| lytic murein transglycosylase [Roseobacter sp. AzwK-3b] Length = 432 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 9/86 (10%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + GW L + + ++ L G + + A++ F Sbjct: 356 EAVAGACGWSTLDLSR-------DDYRAIQTMLNAGGF--DAGTPDGVWGNGSRKAMRAF 406 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDL 171 Q ++GL +G D TLEA+ V Sbjct: 407 QEQNGLPATGAPDRVTLEALGVSPSD 432 >gi|254393774|ref|ZP_05008891.1| hypothetical protein SSCG_06177 [Streptomyces clavuligerus ATCC 27064] gi|294814614|ref|ZP_06773257.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] gi|326443000|ref|ZP_08217734.1| transcriptional regulator, XRE family protein [Streptomyces clavuligerus ATCC 27064] gi|197707378|gb|EDY53190.1| hypothetical protein SSCG_06177 [Streptomyces clavuligerus ATCC 27064] gi|294327213|gb|EFG08856.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 2/70 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ + + G V+ ++ L G + F + AV Q R + Sbjct: 150 GYSSTSTQIVREGARGNVVREIQCLLDYWGIFPH--AIDGVFGPLTKDAVVEAQRRCQIA 207 Query: 153 PSGMVDSSTL 162 G+V +T Sbjct: 208 QDGIVGPNTW 217 >gi|226947822|ref|YP_002802913.1| YbfG [Clostridium botulinum A2 str. Kyoto] gi|226840753|gb|ACO83419.1| YbfG [Clostridium botulinum A2 str. Kyoto] Length = 695 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 6/107 (5%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVS--VQRLRERLIISGDL 124 + S++T KA+ + G W P G++S V L+ L ++G Sbjct: 167 VYSRDTNRALIKALQVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNG-- 224 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 G F + +A+K FQ L G ++ V Sbjct: 225 IDPNGFDGLFGNGLSNAIKEFQSFCALPADGYAGKQVWASLLVSTGD 271 >gi|168177934|ref|ZP_02612598.1| putative peptidoglycan binding domain protein [Clostridium botulinum NCTC 2916] gi|182670965|gb|EDT82939.1| putative peptidoglycan binding domain protein [Clostridium botulinum NCTC 2916] Length = 695 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 6/107 (5%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVS--VQRLRERLIISGDL 124 + S++T KA+ + G W P G++S V L+ L ++G Sbjct: 167 VYSRDTNRALIKALQVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNG-- 224 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 G F + +A+K FQ L G ++ V Sbjct: 225 IDPNGFDGLFGNGLSNAIKEFQSFCALPADGYAGKQVWASLLVSTGD 271 >gi|146306620|ref|YP_001187085.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina ymp] gi|145574821|gb|ABP84353.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina ymp] Length = 174 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 Y+H TP+ + GCVR+RN L Sbjct: 118 IYLHGTPDCEPMGVP---LSHGCVRLRNADML 146 >gi|319782167|ref|YP_004141643.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168055|gb|ADV11593.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 196 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 40/138 (28%), Gaps = 22/138 (15%) Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKD-----MMALLRQDPQYLKDNNIHMIDEKGKEV 281 P L + I II+KD ++ Q +Y G Sbjct: 46 MGPSLRKAVTFRTAEQPGTI---IIRKDEKALYLVTRQGQALRYQISVGRDGFGWTGIVK 102 Query: 282 FVEEVDWNSPEPPN--------FIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPI 330 + +W PP G N + + + R+ Y +H T +P Sbjct: 103 VGAKTEWPEWRPPQEMRARQPELPKMVPAGPYNPLGARALYLSRDGRDTLYRIHGTNDPS 162 Query: 331 LFNNVVRFETSGCVRVRN 348 TSGC R+ N Sbjct: 163 GVGFDG---TSGCFRLTN 177 >gi|296221444|ref|XP_002756745.1| PREDICTED: matrix metalloproteinase-21 [Callithrix jacchus] Length = 571 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 43/146 (29%), Gaps = 35/146 (23%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA---I 82 L ++L + + F + P+ + IA A + Sbjct: 2 LTASIFRPTLLLCWLAAPGPTQPESLFHSRDHSDLEP----SPLRQAQPIADLHAAQRFL 57 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + Y ++ W P P + + AV Sbjct: 58 SRYGWSGAQAAWGPSPEGP-------PETPK---------------------GTSLAQAV 89 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 + FQ + L SG +D++TL AMN P Sbjct: 90 RRFQRANALPASGELDAATLAAMNQP 115 >gi|85706918|ref|ZP_01038008.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. 217] gi|85668529|gb|EAQ23400.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. 217] Length = 179 Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 6/84 (7%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MH 324 L + K + P + PG N + + + Y +H Sbjct: 82 LTRRGRTAVVRKVEGPSWRPTPSMLQRNPEWPAFVPPGPDNPLGTHALYLS--WTYYRIH 139 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T + R ++GCV + N Sbjct: 140 GTHDTRKIG---RRSSNGCVGLYN 160 >gi|298291921|ref|YP_003693860.1| peptidoglycan-binding protein [Starkeya novella DSM 506] gi|296928432|gb|ADH89241.1| Peptidoglycan-binding domain 1 protein [Starkeya novella DSM 506] Length = 1052 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 8/92 (8%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 +V +++ L+ G + + +A+ FQ GL +G + T+E + Sbjct: 31 NVSQIQRALVDHGY--NIGAVDGLWGRRSINALAAFQKSEGLPATGELSDETVEKLLQSP 88 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 R+ + + + P Sbjct: 89 QPRV------MAPARAITPALPAGPTPSPQAP 114 >gi|89056490|ref|YP_511941.1| peptidoglycan binding domain-containing protein [Jannaschia sp. CCS1] gi|88866039|gb|ABD56916.1| Peptidoglycan-binding domain 1 [Jannaschia sp. CCS1] Length = 568 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +RL + G + FD AV+ +Q G+D +G +D T+ Sbjct: 505 QRLTVLGL--DPGRVDGRFDDSTRRAVRRYQQARGMDVTGYLDQQTV 549 >gi|228918376|ref|ZP_04081835.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841271|gb|EEM86454.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 414 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD------PSKGLSVAFDAYVESAVKL 144 +G + P + L G S V+ ++ ++ ++ P ++ F AVK Sbjct: 326 QGRPTQPPEKILKEGTSGSDVREIQ---VLLNEISKKYNKIPKIQVNGKFGDTTTKAVKA 382 Query: 145 FQMRHGLDPSGMVDSSTLEAMN 166 FQ + G+VD T + Sbjct: 383 FQEIFTVPQDGIVDFRTWYKIT 404 >gi|218528934|ref|YP_002419750.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium chloromethanicum CM4] gi|218521237|gb|ACK81822.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium chloromethanicum CM4] Length = 250 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 20/145 (13%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE--------- 96 + +A + I +A ++ A A +D W Sbjct: 110 PYPEAQIAAVIALARDIVVRRA-IPGPRVLAHSDVAPARKEDPGEDFPWERLAREGVGHW 168 Query: 97 LPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +P P+ +G++ V+ L+ L + G + ++ FDA + + V FQ Sbjct: 169 VPTAPVRDGRFFAMGDTGQPVEALQAMLALYGY---EQPVTGHFDAAMRAVVTAFQRHFR 225 Query: 151 -LDPSGMVDSSTLEAMNVPVDLRIR 174 G+ DSST+ + + R Sbjct: 226 PARIDGVADSSTITTLRDLIASRPA 250 >gi|62317131|ref|YP_222984.1| hypothetical protein BruAb2_0179 [Brucella abortus bv. 1 str. 9-941] gi|62197324|gb|AAX75623.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] Length = 227 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 37/140 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 113 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 170 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 171 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 196 Query: 316 YSRNNTYMHDTPEPILFNNV 335 +H T +P Sbjct: 197 G-STLYRIHGTNQPWTIGRP 215 >gi|148257428|ref|YP_001242013.1| 1 N-acetylmuramoyl-L-alanine amidase [Bradyrhizobium sp. BTAi1] gi|146409601|gb|ABQ38107.1| putative 1 N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan binding domain [Bradyrhizobium sp. BTAi1] Length = 283 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 92 GGWPELPI----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W + L LG+ V+ L++ L G ++ FD V FQ Sbjct: 192 GHWVQPAAITKGETLKLGSIGDDVRGLQKALAKYGY---GVPITGKFDGITMDVVTAFQR 248 Query: 148 RHGLD-PSGMVDSSTL 162 + G+ D STL Sbjct: 249 HFRPERIDGIADRSTL 264 >gi|300785513|ref|YP_003765804.1| lysozyme [Amycolatopsis mediterranei U32] gi|299795027|gb|ADJ45402.1| lysozyme [Amycolatopsis mediterranei U32] Length = 428 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 101 PLHLGNSSVSVQRLRERL---IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G+S V+ L+ RL + G P + F + V FQ G+ Sbjct: 125 TLQSGSSGTDVKELQCRLNLAMEPGHYPP-LTIDGQFGDGTRTRVIQFQHCANASADGVA 183 Query: 158 DSSTLEAMN 166 +T + Sbjct: 184 GPTTWAKVA 192 Score = 44.6 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G + +V + L ++ + +F ++ V++FQ L G + Sbjct: 27 TLKQGATGAAVAEAQCELNLATKASRYTPIGADGSFGPATDARVRVFQKCAALSVDGQIG 86 Query: 159 SSTLEAMNV-PVDLR 172 +T A+N R Sbjct: 87 PNTWAALNSWSARPR 101 >gi|260544368|ref|ZP_05820189.1| ybiS [Brucella abortus NCTC 8038] gi|260759630|ref|ZP_05871978.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260762873|ref|ZP_05875205.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] gi|260097639|gb|EEW81513.1| ybiS [Brucella abortus NCTC 8038] gi|260669948|gb|EEX56888.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 4 str. 292] gi|260673294|gb|EEX60115.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus bv. 2 str. 86/8/59] Length = 260 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 37/140 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 146 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 203 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 204 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 229 Query: 316 YSRNNTYMHDTPEPILFNNV 335 +H T +P Sbjct: 230 G-STLYRIHGTNQPWTIGRP 248 >gi|254698413|ref|ZP_05160241.1| Protein YBIS precursor [Brucella abortus bv. 2 str. 86/8/59] gi|254731860|ref|ZP_05190438.1| Protein YBIS precursor [Brucella abortus bv. 4 str. 292] Length = 227 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 37/140 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 113 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 170 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 171 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 196 Query: 316 YSRNNTYMHDTPEPILFNNV 335 +H T +P Sbjct: 197 G-STLYRIHGTNQPWTIGRP 215 >gi|227502232|ref|ZP_03932281.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium accolens ATCC 49725] gi|227077056|gb|EEI15019.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium accolens ATCC 49725] Length = 382 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 12/70 (17%) Query: 110 SVQRLRERLIISGDLD------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 V R L G L FDA + +K FQ G+ P+G + Sbjct: 2 RVAEARATLARLGLLSDFTGELSAWKKQKYSETDKTFDADLAEVLKAFQQSRGILPTGEI 61 Query: 158 DSSTLEAMNV 167 D TL + Sbjct: 62 DDLTLRELRQ 71 Score = 43.5 bits (101), Expect = 0.064, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 18/131 (13%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGN 106 F L+ S+ +A+ KA + IL G +L +R L LG+ Sbjct: 19 FTGELSAWKKQKYSETDKTFDADLAEVLKAFQQSRGILPTGEIDDLTLRELRQASYTLGS 78 Query: 107 S-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +L+++L G + F +A+ +Q GL G Sbjct: 79 RVLSYEPTNALVGDDISQLQQQLQELGFY--QDRVDGHFGRTTHAALTEYQHNCGLQEDG 136 Query: 156 MVDSSTLEAMN 166 + +T+ A++ Sbjct: 137 VCGPATIRALS 147 >gi|83952916|ref|ZP_00961645.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius nubinhibens ISM] gi|83835707|gb|EAP75007.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius nubinhibens ISM] Length = 192 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 49/222 (22%) Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL-RYVLVNIP-AAS 204 R L +G V TL + V + + + + + +++ G Y + +P + Sbjct: 3 RRKFLLAAGAVG--TLASQPVSAHVVLPKYDLPPEYLPQVVSIPEGSAPYEIHVVPSQFA 60 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L + +R V +GR + P W +++++ Sbjct: 61 LFWTQPDNTAIRYAVGIGRPGLY-EAGEFYVGAKKEWPSWTPTPGMLRRE--PK------ 111 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY 322 + F G N + + + R +T+ Sbjct: 112 ---------------------------KYGPFRNGMPGGLSNPLGARALYLFQPGRGDTF 144 Query: 323 M--HDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 + H T +P + ++GC R+ N I+ L + DT Sbjct: 145 LRVHGTNDPSTIGS---AVSNGCARLVNDQIVQLYDMVPLDT 183 >gi|91975382|ref|YP_568041.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] gi|91681838|gb|ABE38140.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 286 Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 302 PGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 G N + + ++ + +H T EP +SGC+R+ ++++DL Sbjct: 221 GGVDNPLGPRALYLYRNGKDTMFRIHGTTEPGTIGE---AVSSGCIRMLNQDVLDLYE 275 >gi|158426173|ref|YP_001527465.1| N-acetylmuramoyl-L-alanine amidase [Azorhizobium caulinodans ORS 571] gi|158333062|dbj|BAF90547.1| N-acetylmuramoyl-L-alanine amidase [Azorhizobium caulinodans ORS 571] Length = 274 Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + Y +GG R L +G+S + L+ L + G ++ +D Sbjct: 166 HAGVGHYVHEAPKGG-----GRFLMMGDSGQPIAALQAMLALYGY---GIEVTGLYDEAT 217 Query: 139 ESAVKLFQMRH-GLDPSGMVDSSTL 162 V FQ G+ D ST+ Sbjct: 218 RDVVMAFQRHFRRSQVDGVADGSTI 242 >gi|320163045|gb|EFW39944.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864] Length = 288 Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 60/239 (25%), Gaps = 37/239 (15%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + + L+ L D S ++ +D +AV Q L+ +G+VD +T +A Sbjct: 41 TGNDIVVLQHFLQRL-DTVTSLNVTGTYDYPTMTAVLKLQATARLNVTGVVDQATADAA- 98 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 L+ YV V P + + I Sbjct: 99 --------------------LDMLSRDHYVDVQGPLPDGYLYKVVVPVHSNRSIEMMATL 138 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 S + P + +M + P + D E E Sbjct: 139 YDKRGLSIFTFLTRAEGQNDPNTGAPLNMFSSDGATPT-----GLMSFDLNSPEDDPTEY 193 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYS-RNNTYMHDTPEPILFNNVVRFETSGCV 344 + + RN MH P ++ + GC+ Sbjct: 194 GPYPVNRAVLGLE---------GNAAWLLPNLRNGILMHTGEWPNWNTSMPMPNSHGCI 243 >gi|225570471|ref|ZP_03779496.1| hypothetical protein CLOHYLEM_06572 [Clostridium hylemonae DSM 15053] gi|225160668|gb|EEG73287.1| hypothetical protein CLOHYLEM_06572 [Clostridium hylemonae DSM 15053] Length = 627 Score = 45.0 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 42/186 (22%), Gaps = 57/186 (30%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIM 239 R G Y V++ + ++NG+V L++ ++ G TP + Sbjct: 488 RAASHDVNDFGNTYAEVDLTNQQMYFIQNGQVVLQTGIVTGNPNKGNGTPQGTYSLAYKA 547 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 + + + D Y + Sbjct: 548 LDQV-----------LRGKKKPDGTYEYE------------------------------- 565 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRV--RNIIDLDVW 355 + K HD F + GCV + L Sbjct: 566 ---------SPVKFWMPFNGGIGFHDATWQPTFGGSRYQTNGSHGCVNMPYDKAAQLYDL 616 Query: 356 LLKDTP 361 + TP Sbjct: 617 ISAGTP 622 >gi|304406255|ref|ZP_07387912.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] gi|304344839|gb|EFM10676.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] Length = 434 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 6/72 (8%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLD-- 152 P L G + +V ++ L I P + FD E AVK FQ + Sbjct: 350 PGHELKKGMTDPAVGAMKGFLNVIRKSYPAIPQLNATDLFDEQTEKAVKKFQEINKKKLK 409 Query: 153 -PSGMVDSSTLE 163 +G+V+ T Sbjct: 410 VANGIVNEPTWR 421 >gi|284047661|ref|YP_003398000.1| ErfK/YbiS/YcfS/YnhG family protein [Acidaminococcus fermentans DSM 20731] gi|283951882|gb|ADB46685.1| ErfK/YbiS/YcfS/YnhG family protein [Acidaminococcus fermentans DSM 20731] Length = 205 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 53/166 (31%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--------DRQTPILHSRINRIMFNP 242 +L+ +L +++G+ + V +G+ D +TP ++ I+ Sbjct: 65 PHDYALLIKKGEFTLYLLDHGEPVAKWPVALGKNPGQKQVSGDMKTPEGTFPVDEIIDAS 124 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W D + G + ++ + Sbjct: 125 SW------------------SHDFHDGKGVIQHAYG----PWFISLDTRNLSKGKW---- 158 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T +P R + GC+R+ N Sbjct: 159 ----------------DGIGIHGTHDPASIG--TRA-SEGCIRLEN 185 >gi|83955853|ref|ZP_00964395.1| hypothetical protein NAS141_02171 [Sulfitobacter sp. NAS-14.1] gi|83839858|gb|EAP79035.1| hypothetical protein NAS141_02171 [Sulfitobacter sp. NAS-14.1] Length = 183 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 12/125 (9%) Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIFRQD 301 W +P + + + + R+ Y +K + + F Sbjct: 54 WTLPNNRAIRYTVGIGREGL-YESGEFYVARKQKWPRWTPTPAMIARDPDRYLRFAGGVP 112 Query: 302 PGKINAMASTKIEF--YSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVW 355 G N + + + R +TY +H T +P R ++GC R+ N II+L Sbjct: 113 GGLNNPLGARALYLYQPGRGDTYLRIHGTTDPKTIG---RRVSNGCARLTNNQIIELYEK 169 Query: 356 LLKDT 360 + DT Sbjct: 170 VPLDT 174 >gi|189022393|ref|YP_001932134.1| Protein YBIS precursor [Brucella abortus S19] gi|189020967|gb|ACD73688.1| Protein YBIS precursor [Brucella abortus S19] Length = 296 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 37/140 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++++ + L V+ R V VG+ + RI+R P W P +I ++ Sbjct: 182 IVIDTASRFLYLVQADGKARRYGVGVGKQG-FSWKGTQRISRKAEWPTWTPPSEMIARE- 239 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + R D G N + + + Sbjct: 240 ----------------------------------RKKGRFLPARMDGGINNPLGARALYL 265 Query: 316 YSRNNTYMHDTPEPILFNNV 335 +H T +P Sbjct: 266 G-STLYRIHGTNQPWTIGRP 284 >gi|161507774|ref|YP_001577738.1| hypothetical protein lhv_1466 [Lactobacillus helveticus DPC 4571] gi|160348763|gb|ABX27437.1| hypothetical protein lhv_1466 [Lactobacillus helveticus DPC 4571] Length = 265 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR--IRQLQVNLMRIKK 185 ++ +AVK FQ RHGL +G V+ T + M I L Sbjct: 79 NYYNQATYNAVKNFQRRHGLKATGNVNLKTWQKMGFSKKSWYGIDSYVAPLKAKAW 134 >gi|319404611|emb|CBI78217.1| peptidoglycan-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 350 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ RL GD + + A+K FQ+RHGL+ +G TL + Sbjct: 296 IELQSRLAKLGDY--EGEIDGKIGIASKKAIKAFQLRHGLEGNGYPSYETLSHIRK 349 >gi|94502083|ref|ZP_01308587.1| general secretion pathway protein A [Oceanobacter sp. RED65] gi|94425794|gb|EAT10798.1| general secretion pathway protein A [Oceanobacter sp. RED65] Length = 464 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 36/152 (23%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ---------- 77 + + AS++DE D A + + P +++ Sbjct: 327 QGMLPASLIDENDWVKQGGDWQLLVDKPAATALVYTELSWPFAFPKSVVVEPNEYHEAVS 386 Query: 78 -TEKAIAFYQDILS-RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +++ Q S W + NS ++R FD Sbjct: 387 WVRQSLIQLQGQASLADDW-----EVIRPANS----AQIRR---------------NFFD 422 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +E V+ FQ + L G++ S T+ A++ Sbjct: 423 PLLEDQVRQFQSDYALRVDGIIGSQTIMALSR 454 >gi|239926863|ref|ZP_04683816.1| hypothetical protein SghaA1_01447 [Streptomyces ghanaensis ATCC 14672] gi|291435208|ref|ZP_06574598.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291338103|gb|EFE65059.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 255 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-- 152 P + + L G ++ V L++ LI G G + + +AV FQ + G Sbjct: 178 PTVELENLQYGKTNGDVVDLQKALIEHG-GKIPAGATGYYGDQTRAAVAAFQRKQGWTGP 236 Query: 153 -PSGMVDSSTLEAMN 166 G+ T + +N Sbjct: 237 AADGIPGVETCKRLN 251 >gi|291301425|ref|YP_003512703.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290570645|gb|ADD43610.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 192 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ V + L++ G L + F + A ++Q G+ +G V+++T Sbjct: 68 DNTDLVVLWQSVLVVDGFLATEDPIDGYFGPDTKRATAMWQDHFGVKQTGKVNAATWAEA 127 Query: 166 N 166 + Sbjct: 128 S 128 >gi|329935908|ref|ZP_08285710.1| Putative peptidoglycan binding domain 1 [Streptomyces griseoaurantiacus M045] gi|329304599|gb|EGG48475.1| Putative peptidoglycan binding domain 1 [Streptomyces griseoaurantiacus M045] Length = 482 Score = 45.0 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 45/135 (33%), Gaps = 11/135 (8%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P RPLH G V++ L G + ++ +AVK +Q GL +G V Sbjct: 205 PPRPLH-GM---DVKQFEANLSALGY--SGFTVDESYTELTAAAVKRWQADLGLPRTGRV 258 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + + PV + +V + R V V +PA + G Sbjct: 259 GLGDVVYASGPVRIAGTSARVGEAASGNPVSYTSTSRMVTVGVPAGDTDWARRGSE---- 314 Query: 218 TVIVGRVDRQTPILH 232 V V D T Sbjct: 315 -VSVELPDGHTVTGT 328 >gi|311741708|ref|ZP_07715530.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303229|gb|EFQ79310.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium pseudogenitalium ATCC 33035] Length = 382 Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 18/131 (13%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGN 106 F L+ S+ +++ KA + I+ G +L +R L LG+ Sbjct: 19 FKGELSAWKKQKYSESDKSFDANLSEVLKAFQQSRGIVPTGEIDDLTLRELRQASYTLGS 78 Query: 107 S-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +L+++L G + F +A+K +Q GL G Sbjct: 79 RVLSYEPANELVGDDISQLQQQLQELGFYQQR--VDGHFGTNTHAALKEYQHNCGLQEDG 136 Query: 156 MVDSSTLEAMN 166 + +T+ A+ Sbjct: 137 VCGPATIRALG 147 Score = 43.9 bits (102), Expect = 0.049, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 13/113 (11%) Query: 110 SVQRLRERLIISGDLD------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 V R L G L +FDA + +K FQ G+ P+G + Sbjct: 2 RVAEARATLARLGLLSDFKGELSAWKKQKYSESDKSFDANLSEVLKAFQQSRGIVPTGEI 61 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 D TL + + ++ +L+ + + + V+ Sbjct: 62 DDLTLRELRQ-ASYTLGSRVLSYEPANELVGDDISQLQQQLQELGFYQQRVDG 113 >gi|225452584|ref|XP_002275582.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296087730|emb|CBI34986.3| unnamed protein product [Vitis vinifera] Length = 303 Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP--SKGLSVAFDAY-----VESAVKLFQMRHGLDPSG 155 G+ + ++R L G L SK S +ESA++ FQ + L P+G Sbjct: 43 KKGDKVEGIHKVRNYLQRFGYLSSTHSKTESQVDGDDHFDDDLESAIQAFQTYYHLKPTG 102 Query: 156 MVDSSTLEAMNVP 168 ++D+ T M+ P Sbjct: 103 ILDAPTAALMSRP 115 >gi|302563365|ref|NP_001180685.1| matrix metallopeptidase 23A (pseudogene) [Macaca mulatta] Length = 569 Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 29/143 (20%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L ++L + + + F + P+ + IA A Sbjct: 2 LAASIFRPTLLLCWLAAPWSTQPESLFHSRDRSDLEP----SPLRQAKPIADLHAA---- 53 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q LSR GW L G + A + +AV+ F Sbjct: 54 QRFLSRYGWSGLRA--------------------AWGPSSEGPPETPE-GAALAAAVRRF 92 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q + L SG +D++TL AMN P Sbjct: 93 QRANALPASGELDAATLAAMNRP 115 >gi|186684874|ref|YP_001868070.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467326|gb|ACC83127.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 276 Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 111 VQRLRERLIISGDLDPS--KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ L+ RL G P+ + +AVK FQ GL +G+ + + P Sbjct: 109 VKGLQNRLKFHGFATPAEIPQDKPFYGPATYTAVKKFQKSQGLTENGIATFEQRQILQQP 168 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 64/217 (29%), Gaps = 39/217 (17%) Query: 107 SSVSVQRLRERLIISGDLDPSKG--------------LSVAFDAYVESAVKLFQMRH--G 150 SS V +R LI G L P + D E A+K FQ ++ Sbjct: 33 SSPEV--IRHILIGLGYLAPEIDPKPDLTKFAPWKRNNNSLTDDLTEEAIKKFQKQYSQK 90 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVN-LMRIKKLLEQKM---GLRYVLVNIPAASLE 206 L +G D+ T M V +L+ + ++ + K Y V S Sbjct: 91 LVVNGNADAETRTVMEETVKGLQNRLKFHGFATPAEIPQDKPFYGPATYTAVKKFQKSQG 150 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM----ALLRQD 262 ENG I+ + + + + P+S ++ + Q+ Sbjct: 151 LTENGIATFEQRQILQQPN-------------LTDKPPTPPQSQLKLIDLCFQFKKNPQN 197 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P Y+ N + + W N Sbjct: 198 PSYIAALNNLQQNLPKDVLHKVTNKWRGTNDQNPEIV 234 >gi|187935424|ref|YP_001884333.1| spore cortex-lytic enzyme SleC [Clostridium botulinum B str. Eklund 17B] gi|187723577|gb|ACD24798.1| spore cortex-lytic enzyme SleC [Clostridium botulinum B str. Eklund 17B] Length = 443 Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+ V+ ++ +L I L P F +VK+FQ L + Sbjct: 330 PDYDLTVGSVGEPVKTIQNQLNRISKNYPLIPKVAEDGVFGQTTAESVKVFQGIFNLPQT 389 Query: 155 GMVDSSTLEAMN 166 G+VD +T ++ Sbjct: 390 GVVDYATWYKIS 401 >gi|13475891|ref|NP_107461.1| hypothetical protein mll7072 [Mesorhizobium loti MAFF303099] gi|14026650|dbj|BAB53247.1| mll7072 [Mesorhizobium loti MAFF303099] Length = 464 Score = 45.0 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 101 PLHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L + + V L+ L G +P +A+ FQ +GL+ +G+ D Sbjct: 202 SLEPDDEMAKDVVWLQHSLNALG-ANPQLVEDGKSGPLTRTALSRFQQLNGLNDTGLADP 260 Query: 160 STLEAMNVPVDL 171 T+ A++ + Sbjct: 261 LTIAAIDRQLQP 272 >gi|228968274|ref|ZP_04129272.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar sotto str. T04001] gi|228791447|gb|EEM39051.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar sotto str. T04001] Length = 481 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVP--GREDGYFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNV 167 T EA+ Sbjct: 463 KTAEAIQT 470 >gi|38638452|ref|NP_943827.1| gp49 [Mycobacterium phage PG1] gi|109391895|ref|YP_655145.1| gp49 [Mycobacterium phage Orion] gi|33334067|gb|AAQ12126.1| gp49 [Mycobacterium phage PG1] gi|88910437|gb|ABD58365.1| gp49 [Mycobacterium phage Orion] gi|282721531|gb|ADA83978.1| gp49 [Mycobacterium phage Scoot17C] Length = 429 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 109 VSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V+R++ RL + + F E AV+ FQ R L G+V +T A+ Sbjct: 370 DRVRRVQRRLKAA-YRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTAAALK 428 >gi|304394045|ref|ZP_07375968.1| peptidoglycan-binding domain 1 protein [Ahrensia sp. R2A130] gi|303293485|gb|EFL87862.1| peptidoglycan-binding domain 1 protein [Ahrensia sp. R2A130] Length = 1176 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V + + L G AV+ FQ G+ +G +D TL A+N+ Sbjct: 1120 PTVLKAQALLNQRGY--NVGQPDGLAGPNTRKAVRDFQRSAGIPVTGEIDRETLRALNI 1176 >gi|295111271|emb|CBL28021.1| Uncharacterized protein conserved in bacteria [Synergistetes bacterium SGP1] Length = 263 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 62/237 (26%), Gaps = 71/237 (29%) Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 +SG LD ++ D +++A G V + P D + + Sbjct: 70 LSGPLDSPDVPALLADEALDAA---------SSEPGAVLPE----VEEPEDETPQMTEPT 116 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--------DRQTPIL 231 + G ++L+N L + V +G+ D +TP Sbjct: 117 PTPSALRPPRDAGKYWILINKGQYRLSLYRGRDLVKTYNVAIGKNPGNKRRVGDNRTPEG 176 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 R+ I W ++ D KG+ + Sbjct: 177 QFRVLSIENASGW-----------------------KHDFG--DGKGEI---------AG 202 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + R D G +H T P + GC+R+ N Sbjct: 203 AYGPWFIRLDTGGW-------------KGIGIHGTHAPDSLGT---MASEGCIRMNN 243 >gi|253996097|ref|YP_003048161.1| ErfK/YbiS/YcfS/YnhG family protein [Methylotenera mobilis JLW8] gi|253982776|gb|ACT47634.1| ErfK/YbiS/YcfS/YnhG family protein [Methylotenera mobilis JLW8] Length = 159 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 8/54 (14%) Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 N + + + Y+H TP+ + + GC+R+RN+ L + Sbjct: 102 KNRLGNVDTM---QRYIYIHGTPDSVALGTPD---SHGCIRMRNVDIVALFDLV 149 >gi|13471560|ref|NP_103126.1| hypothetical protein mll1570 [Mesorhizobium loti MAFF303099] gi|14022302|dbj|BAB48912.1| mll1570 [Mesorhizobium loti MAFF303099] Length = 251 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMV 157 L G V+ L+ L + G +S FD + V+ FQ G+ Sbjct: 178 GAALKAGERGADVEALQSMLALYGY---GVEISGIFDHQTQIVVEAFQRHFRPRLIDGLA 234 Query: 158 DSSTLE 163 D ST+ Sbjct: 235 DGSTMR 240 >gi|282865059|ref|ZP_06274112.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] gi|282559982|gb|EFB65531.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] Length = 426 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 9/89 (10%) Query: 86 QDILSRGGW----PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVE 139 + I + GG P P G S+ VQRL +L+ G G + Sbjct: 336 RTIPAAGGGADEAPAFPGRGSFRPGQSNSDVQRLGTQLVKKGYGRYYAKGPDRRWTEADR 395 Query: 140 SAVKLFQMRH---GLDPSGMVDSSTLEAM 165 V+ FQ G G T + Sbjct: 396 RNVEAFQKAQGWRGSAADGYPGPETWRRL 424 >gi|255927572|gb|ACU41194.1| gp48 [Mycobacterium phage Colbert] Length = 433 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 109 VSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V+R++ RL + + F E AV+ FQ R L G+V +T A+ Sbjct: 374 DRVRRVQRRLKAA-YRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTAAALK 432 >gi|306834789|ref|ZP_07467853.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium accolens ATCC 49726] gi|304569317|gb|EFM44818.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium accolens ATCC 49726] Length = 382 Score = 45.0 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 12/70 (17%) Query: 110 SVQRLRERLIISGDLD------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 V R L G L FDA + +K FQ G+ P+G + Sbjct: 2 RVAEARATLARLGLLSDFTGELSAWKKQKYSETDKTFDADLADVLKAFQQSRGILPTGEI 61 Query: 158 DSSTLEAMNV 167 D TL + Sbjct: 62 DDLTLRELRQ 71 Score = 43.9 bits (102), Expect = 0.057, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 18/131 (13%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGN 106 F L+ S+ +A KA + IL G +L +R L LG+ Sbjct: 19 FTGELSAWKKQKYSETDKTFDADLADVLKAFQQSRGILPTGEIDDLTLRELRQASYTLGS 78 Query: 107 S-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +L+++L G + F +A+ +Q GL G Sbjct: 79 RVLSYEPTNALVGDDISQLQQQLQELGFY--QDRVDGHFGRTTHAALTEYQHNCGLQEDG 136 Query: 156 MVDSSTLEAMN 166 + +T+ A++ Sbjct: 137 VCGPATIRALS 147 >gi|307946479|ref|ZP_07661814.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770143|gb|EFO29369.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 305 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 3/74 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEA 164 V+ +E L G + ++AV +Q H L G++ +TL Sbjct: 174 QPDPVVEEAQEALKRFGF--DPGAIDGWMGRRTKAAVLAYQKTHPHLTNDGIIGPATLAQ 231 Query: 165 MNVPVDLRIRQLQV 178 + L Sbjct: 232 LRRDAVATKETLTQ 245 >gi|299069644|emb|CBJ40917.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum CMR15] Length = 427 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +++L++RL G + ++A++ +Q L G S L + Sbjct: 372 DIKQLQQRLADKGY--DPGTIDGLIGDRTQAAIRAYQKDQHLPQDGYASRSLLARLEK 427 >gi|260462077|ref|ZP_05810321.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Mesorhizobium opportunistum WSM2075] gi|259031937|gb|EEW33204.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Mesorhizobium opportunistum WSM2075] Length = 251 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 4/70 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMV 157 L G V+ L+ L + G +S FD V+ FQ G+ Sbjct: 178 GATLGPGARGADVEALQSMLALYGY---GVEISGVFDHQTRIVVEAFQRHFRPRLVDGLA 234 Query: 158 DSSTLEAMNV 167 D ST+ + Sbjct: 235 DGSTMRTLQK 244 >gi|309811332|ref|ZP_07705119.1| peptidoglycan binding domain protein [Dermacoccus sp. Ellin185] gi|308434639|gb|EFP58484.1| peptidoglycan binding domain protein [Dermacoccus sp. Ellin185] Length = 54 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +AV FQ H L G+ +T A+ Sbjct: 12 ADGVFGPQTRAAVVRFQRAHHLGVDGVAGRATFRAL 47 >gi|284047329|ref|YP_003397669.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283951550|gb|ADB54294.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 375 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 19/169 (11%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V L+++L G P G +D A++ ++ +G+ TL+A Sbjct: 197 GTRSAFVGILQQKLAKLGYAVPRNG---VYDGGTGRAIEAYRKVNGMSR-----LQTLDA 248 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 V D +R + +R R+V ++ L +ENGKV T G Sbjct: 249 AVV--DKLLRGVGGFKVRY------PQHGRHVEAHLGQQVLALIENGKVYRAYTTSSGAS 300 Query: 225 DRQTPILHSRINRI---MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 T + + R + N V I+ + + P Y + Sbjct: 301 VTPTVLGNFRFYWKQPGVNNREMVHSSYFIRGYAIHGYKSVPTYPASHG 349 >gi|118590912|ref|ZP_01548312.1| negative regulator of AmpC, AmpD [Stappia aggregata IAM 12614] gi|118436434|gb|EAV43075.1| negative regulator of AmpC, AmpD [Stappia aggregata IAM 12614] Length = 254 Score = 45.0 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 10/84 (11%) Query: 87 DILSRGGWPELPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + + G + PL G+S V+ L+ L + G ++ FD Sbjct: 160 RLAAAGIGLYVTPFPLRTGLLMQEGDSGQPVEALQTMLALYGY---ELDITGTFDLKTRQ 216 Query: 141 AVKLFQMRHG-LDPSGMVDSSTLE 163 V FQ G+ D ST+E Sbjct: 217 VVAAFQRHFRPEKVDGVADQSTIE 240 >gi|126734056|ref|ZP_01749803.1| Peptidoglycan-binding domain 1 [Roseobacter sp. CCS2] gi|126716922|gb|EBA13786.1| Peptidoglycan-binding domain 1 [Roseobacter sp. CCS2] Length = 489 Score = 45.0 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + RL G + FD A+ +Q L +G +D +TL + Sbjct: 432 LIENRLEQLGY--NPGRVDGRFDNNTRRAIARYQRDGSLTATGYLDQATLARLLAD 485 >gi|288958596|ref|YP_003448937.1| lytic murein transglycosylase [Azospirillum sp. B510] gi|288910904|dbj|BAI72393.1| lytic murein transglycosylase [Azospirillum sp. B510] Length = 425 Score = 45.0 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 7/77 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 RG WP + L + + L++RL G A +AV+ FQ G Sbjct: 354 RGSWPR-EEQAL---SKDERI-DLQQRLAALGM--EPGTADGIVGANTRNAVRRFQASVG 406 Query: 151 LDPSGMVDSSTLEAMNV 167 P G + L+ + Sbjct: 407 EIPDGFATKALLDRLRQ 423 >gi|206600340|ref|YP_002241360.1| gp50 [Mycobacterium phage Chah] gi|206287428|gb|ACI12770.1| gp50 [Mycobacterium phage Chah] gi|282721427|gb|ADA83875.1| gp49 [Mycobacterium phage Fang] Length = 438 Score = 45.0 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 109 VSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V+R++ RL + + F E AV+ FQ R L G+V +T A+ Sbjct: 379 DRVRRVQRRLKAAYRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTAAALK 437 >gi|160700680|ref|YP_001552360.1| gp31 [Mycobacterium phage Giles] gi|159136630|gb|ABW88426.1| gp31 [Mycobacterium phage Giles] Length = 402 Score = 45.0 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G S +V +L+ L + F + E+ V+ Q +GLD G+V T Sbjct: 338 LHRGMSGPNVVKLQTTLRRW---YSKLAVDGDFGPHTEACVRDRQRIYGLDVDGIVGPLT 394 >gi|255928510|gb|ACU42125.1| gp48 [Mycobacterium phage UncleHowie] Length = 438 Score = 45.0 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 109 VSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V+R++ RL + + F E AV+ FQ R L G+V +T A+ Sbjct: 379 DRVRRVQRRLKAAYRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTAAALK 437 >gi|99082738|ref|YP_614892.1| twin-arginine translocation pathway signal [Ruegeria sp. TM1040] gi|99039018|gb|ABF65630.1| Twin-arginine translocation pathway signal [Ruegeria sp. TM1040] Length = 205 Score = 45.0 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 4/67 (5%) Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 P + PG N + S + + +H T + R ++ Sbjct: 124 SWAPTPNMRKRNPEWPAYIPPGPDNPLGSHALYLSWQY-YRIHGTHDTRKIG---RKSSN 179 Query: 342 GCVRVRN 348 GC+ + N Sbjct: 180 GCIGLYN 186 >gi|291299240|ref|YP_003510518.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568460|gb|ADD41425.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 195 Score = 45.0 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 106 NSSVSVQRL-RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +S + L + L+ G L + F A A +Q + LDP+G VD +T Sbjct: 68 SSGTDLVVLWQSVLVADGYLASVADIDGEFGADTAEATAEWQGDNELDPTGEVDQATWA 126 >gi|182701744|ref|ZP_02955106.1| LycA [Clostridium botulinum NCTC 2916] gi|182668788|gb|EDT80766.1| LycA [Clostridium botulinum NCTC 2916] Length = 54 Score = 45.0 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 16/45 (35%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LI G S G F +A+K Q L G+V T Sbjct: 2 LINIGYPVGSYGADRVFGNGTVTAIKALQRDCNLSVDGVVGKETW 46 >gi|310817256|ref|YP_003965220.1| ErfK/YbiS/YcfS/YnhG family protein [Ketogulonicigenium vulgare Y25] gi|308755991|gb|ADO43920.1| ErfK/YbiS/YcfS/YnhG family protein [Ketogulonicigenium vulgare Y25] Length = 208 Score = 45.0 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 42/177 (23%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 Q+ ++ + + A L + +R V +G +R Sbjct: 52 QIPERYQARIVPVQAGLQPGSFHIVSAAYHLYFILPENRAIRYGVAIGSEG-LGWHGSAR 110 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I R + P W +I+ ++P + Sbjct: 111 IQRKVEWPSWRPTDEMIE--------RNPAAYER-------------------------- 136 Query: 295 NFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + G N + + + FY +H T +P + ++GC R+ N Sbjct: 137 -YRDGMPGGPTNPLGARALYFYQDGRDTAIRVHGTVQPASIGSSS---SNGCFRMYN 189 >gi|325956760|ref|YP_004292172.1| hypothetical protein LAC30SC_05425 [Lactobacillus acidophilus 30SC] gi|325333325|gb|ADZ07233.1| hypothetical protein LAC30SC_05425 [Lactobacillus acidophilus 30SC] Length = 366 Score = 44.6 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 7/77 (9%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR------IRQLQVNLMRIKK 185 ++ +AVK FQ RH L +G +D T + ++ I L+ + + Sbjct: 169 NLYNPATYNAVKNFQRRHNLPATGDIDLKTWQKLDFSKASWYGIDNYIAPLRAQAWQGRS 228 Query: 186 -LLEQKMGLRYVLVNIP 201 +E + Y + P Sbjct: 229 AHIEAMIHQAYQYMGKP 245 >gi|254503418|ref|ZP_05115569.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222439489|gb|EEE46168.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 257 Score = 44.6 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 17/135 (12%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 L+ RL + G +A+K FQ+ + P+G+ D++T++A+ + D R Sbjct: 29 LQMRLNVHG---AQITEDGVIGNETTAALKAFQIARHIKPTGIADAATVKALRISSDQRR 85 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV-----GLRSTVIVGRVDRQT 228 R + + + Q M + + E LR +G + Sbjct: 86 R------VPTRDVPTQTMPP---WLLEMNRRMGLHEGRDNRALSAWLRFGSFLGDPAKLP 136 Query: 229 PILHSRINRIMFNPY 243 + I+ Sbjct: 137 WCGDAVETAIVKTLP 151 >gi|119509318|ref|ZP_01628468.1| hypothetical protein N9414_15245 [Nodularia spumigena CCY9414] gi|119466160|gb|EAW47047.1| hypothetical protein N9414_15245 [Nodularia spumigena CCY9414] Length = 297 Score = 44.6 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 67/246 (27%), Gaps = 50/246 (20%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQ-RLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + R G E L + + L+++LI G LDP F + A+K F Sbjct: 2 QLAERIGTQE--TISLEKLQNDSKLARELQQKLIDLGLLDPLA--DGKFGRFSTQALKDF 57 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q+ ++ G + +T++A+ ++ QL NL Q Y + Sbjct: 58 QLLMKIEEEG-LGKATIQALIEVKEVIPLQLSDNLASRIIKYMQSKNKNYFVARGKQRY- 115 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 I I +P + + Sbjct: 116 ----------------------------NIIYIEGANADGVPNADKLNEWNDR------- 140 Query: 266 LKDNNIHMIDEKGKEVFVEEVDW-NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 I + + V +W + EP ++ A A Y H Sbjct: 141 --RIVIEIAMGTPQIVG----NWLATTEPGHYYTVNPMNPKGA-ARIAFGQYPAWQVGTH 193 Query: 325 DTPEPI 330 EP Sbjct: 194 GNSEPH 199 >gi|188582496|ref|YP_001925941.1| lytic murein transglycosylase [Methylobacterium populi BJ001] gi|179345994|gb|ACB81406.1| lytic murein transglycosylase [Methylobacterium populi BJ001] Length = 418 Score = 44.6 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL---EAMNVPVD 170 L+ RL G P+ G +A++ FQ GL P G D++ L A + P Sbjct: 360 LQTRLAALGH--PAGGADGKIGPKTRAAIRAFQEAKGLVPDGYADAALLDRVRAADKPAA 417 Query: 171 L 171 Sbjct: 418 P 418 >gi|221235062|ref|YP_002517498.1| polar development protein podJ [Caulobacter crescentus NA1000] gi|29429226|sp|Q9ZG88|PODJ_CAUCR RecName: Full=Localization factor podJL; AltName: Full=Polar organelle development protein; Contains: RecName: Full=Localization factor podJS gi|251764811|sp|B8GXA0|PODJ_CAUCN RecName: Full=Localization factor podJL; AltName: Full=Polar organelle development protein; Contains: RecName: Full=Localization factor podJS gi|24110907|tpg|DAA00313.1| TPA_exp: polar organelle development protein [Caulobacter vibrioides] gi|220964234|gb|ACL95590.1| polar development protein podJ [Caulobacter crescentus NA1000] Length = 974 Score = 44.6 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 + L G + A+ +Q GL P+G VD+ TL ++V Sbjct: 921 QRVLSQLGYY--QGPRDGVSSPALRMAIAAYQRDQGLPPTGSVDAETLNRLSVYAR 974 >gi|229496449|ref|ZP_04390165.1| ErfK/YbiS/YcfS/YnhG family protein [Porphyromonas endodontalis ATCC 35406] gi|229316677|gb|EEN82594.1| ErfK/YbiS/YcfS/YnhG family protein [Porphyromonas endodontalis ATCC 35406] Length = 319 Score = 44.6 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 61/221 (27%), Gaps = 28/221 (12%) Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 +V+ TL +Q+ +L ++ + + G Sbjct: 26 PTDTIVEPDTLS--------IEQQVAEWEANDTLYHAFLDADEALLYMEKSSHAKQYKEG 77 Query: 212 KVGLRSTVIVG---RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + + R+ +++ + +K+ ++ + Sbjct: 78 ILPRMARENLPYCERLMNNRFDYFIVVDKASMRVLLYNRYGVKEKEYTCACARNYGHKAK 137 Query: 269 NN----IHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMASTKIEFYSRNNTY 322 G+ DW + + R G +I+ Sbjct: 138 KGDCRTPEGFFYAGETFDST--DWLYTDDNGYTSPVRGQYGPR----FIRIKGDKNLPVG 191 Query: 323 MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTP 361 +H T P R + GCVR+ NI++L ++ + P Sbjct: 192 IHGTCAPWALG---RRCSHGCVRIHNDNILELVKYVQPNMP 229 >gi|319406116|emb|CBI79746.1| peptidoglycan-binding protein [Bartonella sp. AR 15-3] Length = 418 Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ RL GD + + A+K FQ+RHGL+ +G TL + Sbjct: 364 IELQSRLEKLGDY--QGEIDGKIGTASKKAIKAFQLRHGLEANGYPSYETLSHIRK 417 >gi|157961727|ref|YP_001501761.1| lytic murein transglycosylase [Shewanella pealeana ATCC 700345] gi|157846727|gb|ABV87226.1| lytic murein transglycosylase [Shewanella pealeana ATCC 700345] Length = 396 Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ L+ +L G + ++ FQ GL G D +T +A+ V Sbjct: 339 ARVKELQNQLNHLGY--DVGKADGILGSKSVKGLQSFQKSQGLVADGYPDEATFKALKV 395 >gi|255621795|ref|XP_002540228.1| ATP synthase subunits region ORF, putative [Ricinus communis] gi|223497860|gb|EEF22155.1| ATP synthase subunits region ORF, putative [Ricinus communis] Length = 119 Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 8/56 (14%) Query: 302 PGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 PG N + + + R+ Y +H TP+ +SGCVR+ +++IDL Sbjct: 54 PGPTNPLGARALYIYQNGRDTLYRVHGTPDWQSIGK---AASSGCVRMLNQDVIDL 106 >gi|145708088|ref|YP_001165263.1| hypothetical protein RPRSA1_gp14 [Ralstonia phage phiRSA1] gi|139003877|dbj|BAF52391.1| phage-related protein [Ralstonia phage phiRSA1] Length = 268 Score = 44.6 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ L+ L G S + +DA +AV+ Q L G+ T Sbjct: 4 LKPGSTGAEVRELQRLLAGRGF---SAADTGEYDAATAAAVRAAQACFDLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 ++A+ V +L R L + Sbjct: 61 VQALRVGARQPGHLTAADLQRAAGTLGVPLE 91 >gi|254438235|ref|ZP_05051729.1| lytic murein transglycosylase subfamily, putative [Octadecabacter antarcticus 307] gi|198253681|gb|EDY77995.1| lytic murein transglycosylase subfamily, putative [Octadecabacter antarcticus 307] Length = 398 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L+ RL G + A E+A++ FQ R L +G+ + L A+ Sbjct: 348 LQRRLAARGY--DIGTIDGVVGAKTEAAIRDFQRRQRLAVTGIATADVLVALR 398 >gi|315635691|ref|ZP_07890954.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Arcobacter butzleri JV22] gi|315479988|gb|EFU70658.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Arcobacter butzleri JV22] Length = 401 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 45/165 (27%) Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NI + + K V G+ + P +I+++ +P W +D + Sbjct: 258 NIMKVKAKINNHLKDIQTYIVSTGKDSVKKPFGVGKISQVSLDPVWYP-----TEDTLKS 312 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYS 317 + I + G K N M + KI Sbjct: 313 -------FEKRGIIL-----------------------PKVVPSGHKYNYMGAAKINLTH 342 Query: 318 ----RNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 ++ +H T ++GC+R+RN ++ L + Sbjct: 343 IVDGKSTYRIHGTLNEKTIGTKE---SAGCIRMRNGDVLQLANLI 384 >gi|255928268|gb|ACU41885.1| gp48 [Mycobacterium phage Puhltonio] Length = 438 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 109 VSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V+R++ RL + + F E AV+ FQ R L G+V +T A+ Sbjct: 379 DRVRRVQRRLKAAYRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTAAALK 437 >gi|157736531|ref|YP_001489214.1| putative periplasmic protein [Arcobacter butzleri RM4018] gi|157698385|gb|ABV66545.1| hypothetical periplasmic protein [Arcobacter butzleri RM4018] Length = 401 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 45/165 (27%) Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NI + + K V G+ + P +I+++ +P W +D + Sbjct: 258 NIMKVKAKINNHLKDIQTYIVSTGKDSVKKPFGVGKISQVSLDPVWYP-----TEDTLKS 312 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYS 317 + I + G K N M + KI Sbjct: 313 -------FEKRGIIL-----------------------PKVVPSGHKYNYMGAAKINLTH 342 Query: 318 ----RNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 ++ +H T ++GC+R+RN ++ L + Sbjct: 343 IVDGKSTYRIHGTLNEKTIGTKE---SAGCIRMRNGDVLQLANLI 384 >gi|159039235|ref|YP_001538488.1| peptidoglycan binding domain-containing protein [Salinispora arenicola CNS-205] gi|159039286|ref|YP_001538539.1| peptidoglycan binding domain-containing protein [Salinispora arenicola CNS-205] gi|157918070|gb|ABV99497.1| Peptidoglycan-binding domain 1 protein [Salinispora arenicola CNS-205] gi|157918121|gb|ABV99548.1| Peptidoglycan-binding domain 1 protein [Salinispora arenicola CNS-205] Length = 272 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 16/46 (34%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 G + ++ +K FQ GL G++ T +A Sbjct: 225 YLRKAGADGLYGPEYQALIKAFQADQGLTRDGLLGRKTWDAAFRNP 270 >gi|49475910|ref|YP_033951.1| hypothetical protein BH11870 [Bartonella henselae str. Houston-1] gi|49238718|emb|CAF27970.1| hypothetical protein BH11870 [Bartonella henselae str. Houston-1] Length = 249 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 11/94 (11%) Query: 301 DPGKINAMASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 PG N + + + F + +T +H + E + +SGC+R+ ++IIDL Sbjct: 151 PPGPDNPLGARALYLFKNGQDTLFRIHGSHESWSIGH---AISSGCIRLLNQDIIDLYDR 207 Query: 356 LLKDT---PTWSRYHIEEVVKTRKTTPVKLATEV 386 + + + ++ + T L + + Sbjct: 208 VPIGSRVVVLQNSESRPSILNQQSKTYDPLQSTI 241 >gi|84685434|ref|ZP_01013332.1| hypothetical protein 1099457000258_RB2654_11213 [Maritimibacter alkaliphilus HTCC2654] gi|84666591|gb|EAQ13063.1| hypothetical protein RB2654_11213 [Rhodobacterales bacterium HTCC2654] Length = 236 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 10/77 (12%) Query: 302 PGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR--VRNIIDLDVWL 356 G N + S +R+ +H +P P R +SGCVR + +I DL + Sbjct: 162 GGPRNPLGSRAFYLYEGNRDTLLRIHGSPSPGSIG--GRA-SSGCVRMVMAHINDLYPQV 218 Query: 357 LKDTPT--WSRYHIEEV 371 K I Sbjct: 219 YKGATAHLHPPERITAA 235 >gi|290955222|ref|YP_003486404.1| glycosyl transferase [Streptomyces scabiei 87.22] gi|260644748|emb|CBG67833.1| putative glycosyl transferase [Streptomyces scabiei 87.22] Length = 448 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + A E+ V+ FQ GL G++ +T A+N Sbjct: 77 AADGTYGAATEARVRDFQRCAGLGVDGVLGPNTWSALN 114 Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 11/108 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIR---------PLHLGNSSVSVQRLRERL- 118 ++ T + + RG L G V V+ ++ RL Sbjct: 104 VLGPNTWSALNSWAEQPRTCADRGASGTAQTAVCGHTDTRPTLRKGAKGVEVEEVQCRLN 163 Query: 119 -IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + P + F ES + FQ L G+V +T + Sbjct: 164 LAMEPFHYPPLSIDGDFGGGTESRIVEFQHCANLGADGVVGPNTWAKL 211 >gi|291521337|emb|CBK79630.1| FOG: Glucan-binding domain (YG repeat) [Coprococcus catus GD/7] Length = 645 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 22/38 (57%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + V +AVK FQ RHGL+ +G+ D +T +A+ Sbjct: 451 YTRRVFNAVKSFQSRHGLEATGITDLATWKALGYSEAD 488 >gi|119511492|ref|ZP_01630602.1| OpcA [Nodularia spumigena CCY9414] gi|119463880|gb|EAW44807.1| OpcA [Nodularia spumigena CCY9414] Length = 453 Score = 44.6 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L G + + +A++ Q+++GL +G TL + R Sbjct: 65 LAALGFY--EGPIDGILGPQMAAALRQVQVKYGLPETGTATPETLALLREEFAKR 117 >gi|317508155|ref|ZP_07965838.1| hypothetical protein HMPREF9336_02210 [Segniliparus rugosus ATCC BAA-974] gi|316253566|gb|EFV12953.1| hypothetical protein HMPREF9336_02210 [Segniliparus rugosus ATCC BAA-974] Length = 313 Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 2/105 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ S V ++ L S +D +++ V Q+ GL +G++D +T A Sbjct: 2 GDLSPKVADIKAYLRREFPHASGLNYSELYDERLKAVVANIQILLGLPATGVMDYATQRA 61 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 R+ + + + + + A L+ + Sbjct: 62 CGYSKPAPPRKPTLFTVHGTGQPDPLGPG--IPADTARAVLDLYD 104 >gi|307194255|gb|EFN76651.1| Matrix metalloproteinase-14 [Harpegnathos saltator] Length = 547 Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 13/85 (15%) Query: 114 LRERLIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP--- 168 L+ L G L PS + AF + +A++ FQ GL+ +G ++ T M P Sbjct: 2 LQNYLSQYGYLQPSNPENGAFLSSDKLTAAIEEFQAFAGLNITGELNEETARLMATPRCG 61 Query: 169 --------VDLRIRQLQVNLMRIKK 185 D R ++ + R + Sbjct: 62 VKDKVGPAADGRSKRYALQGSRWRT 86 >gi|296131513|ref|YP_003638763.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] gi|296023328|gb|ADG76564.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] Length = 165 Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 10/68 (14%) Query: 102 LHLGNSSVSVQRL--------RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 L G+ V+ L R L +G + F A +AVK Q G+ Sbjct: 78 LQYGSRGPGVKALQAAINECHRATLNAAGL--ALLSVDGDFGAKTRTAVKAVQRSLGITV 135 Query: 154 SGMVDSST 161 G+ +T Sbjct: 136 DGVYGPTT 143 >gi|120555335|ref|YP_959686.1| peptidoglycan binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325184|gb|ABM19499.1| Peptidoglycan-binding domain 1 protein [Marinobacter aquaeolei VT8] Length = 136 Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L+ L +G +S + D + + FQ +GL+ +G+++ T Sbjct: 23 LAPVAQANEVVALKHALYGAGY--DITNVSPSMDDKTRAELTRFQKDNGLEATGILNEET 80 Query: 162 LEAMN 166 A+ Sbjct: 81 ERALG 85 >gi|119387466|ref|YP_918500.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119378041|gb|ABL72804.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 573 Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 7/123 (5%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 ++ RL G + G F + SA++ +Q R+G +G + S+ + A+ + Sbjct: 397 VAVQRRLNALGY--STGGADGIFGSRTRSAIRGWQQRNGYAVTGYLTSAQVGALRTQAEA 454 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 + R G L A L+ +G + + ++ P Sbjct: 455 VAPS-RDQQDRAYWQQTGAKGGARNLR----AYLDRYPDGIHAQTARQRLAALNGDAPRG 509 Query: 232 HSR 234 Sbjct: 510 DRE 512 >gi|322703990|gb|EFY95590.1| carbohydrate-binding protein [Metarhizium anisopliae ARSEF 23] Length = 619 Score = 44.6 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 16/50 (32%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L G L+ + +A+K +Q H L G T M Sbjct: 46 LSAYGYLESQDADTGKVGENTIAALKDYQKFHKLKVDGKFGEKTRHLMAQ 95 >gi|292493016|ref|YP_003528455.1| hypothetical protein Nhal_3011 [Nitrosococcus halophilus Nc4] gi|291581611|gb|ADE16068.1| protein of unknown function DUF323 [Nitrosococcus halophilus Nc4] Length = 799 Score = 44.6 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++S V +++ L I G G+ F E A++ +Q GL+P+G + +T E + Sbjct: 439 STSQRV-QVQRALDILGHDPQ--GVDGIFGPKTEDAIRSWQRAEGLEPTGDLTQATYEQL 495 Query: 166 NVPV-DLRIRQLQVNLMRIKKLLEQKMG 192 R + + K Q + Sbjct: 496 MAAARQQREEKAPRSSAEPKLPPMQNIH 523 >gi|237653173|ref|YP_002889487.1| ErfK/YbiS/YcfS/YnhG family protein [Thauera sp. MZ1T] gi|237624420|gb|ACR01110.1| ErfK/YbiS/YcfS/YnhG family protein [Thauera sp. MZ1T] Length = 159 Score = 44.6 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRY 366 Y+H T + + GCVR+RN II+L + T Sbjct: 115 IYLHGTGDDQPMGV---ARSHGCVRMRNHDIIELFELVPAGTVVEIVE 159 >gi|92113032|ref|YP_572960.1| lytic murein transglycosylase [Chromohalobacter salexigens DSM 3043] gi|91796122|gb|ABE58261.1| Lytic murein transglycosylase [Chromohalobacter salexigens DSM 3043] Length = 430 Score = 44.6 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 8/111 (7%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR 115 + + + + IA I +G WP + PL S ++ ++ Sbjct: 323 GPNFRAIMRYNASTSYALAVVTLAERIAGGDGI--QGSWPR-EVEPL----SRTQIKEMQ 375 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 RL G ++ +Q G P G + LEA+ Sbjct: 376 RRLNALGF-STGGSPDGIVGPNTRKGLRAYQRSQGAIPDGFPTPALLEALR 425 >gi|317498218|ref|ZP_07956517.1| phage lysozyme [Lachnospiraceae bacterium 5_1_63FAA] gi|316894427|gb|EFV16610.1| phage lysozyme [Lachnospiraceae bacterium 5_1_63FAA] Length = 246 Score = 44.6 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGM 156 + G+ V+ ++ L G + A++ FQ ++ L + Sbjct: 175 STVKKGSVGNDVELMQRLLRSRGYKGKDGETLEIDKSCGENTLHALEAFQKKNKLTADKI 234 Query: 157 VDSSTLEAM 165 ST + + Sbjct: 235 CGKSTWKKL 243 >gi|319935309|ref|ZP_08009747.1| hypothetical protein HMPREF9488_00578 [Coprobacillus sp. 29_1] gi|319809717|gb|EFW06118.1| hypothetical protein HMPREF9488_00578 [Coprobacillus sp. 29_1] Length = 489 Score = 44.6 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 P ++Q ++E L G + + E A+K F+ R+GL +G+ D Sbjct: 400 KGPYQYDQVDDNIQYMQEMLKELGY--KVDRVDGYYSKATEEALKAFEKRYGLAVNGIYD 457 Query: 159 S 159 Sbjct: 458 K 458 >gi|159042720|ref|YP_001531514.1| lytic murein transglycosylase [Dinoroseobacter shibae DFL 12] gi|157910480|gb|ABV91913.1| lytic murein transglycosylase [Dinoroseobacter shibae DFL 12] Length = 389 Score = 44.6 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + +++L+++L G + A +AV+ Q R GL Sbjct: 319 GAPVFDAGNPEPGLNDAQMKQLQQKLAARGY--DVGAVDGILGARTRAAVRAEQQRLGLP 376 Query: 153 PSGMVDSSTL 162 + L Sbjct: 377 ADAWPTPALL 386 >gi|90419802|ref|ZP_01227711.1| putative serine protease, trypsin family [Aurantimonas manganoxydans SI85-9A1] gi|90335843|gb|EAS49591.1| putative serine protease, trypsin family [Aurantimonas manganoxydans SI85-9A1] Length = 523 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVES----AVKLFQMRHGLDPSGMVDSSTLE 163 L+ RL +GD A+D + + A++ FQ RHG+ G++D + L Sbjct: 59 LQIRLSWTGDYA------GAYDGQIAASSLRAIRDFQARHGMVADGVIDEAMLR 106 >gi|71907823|ref|YP_285410.1| ErfK/YbiS/YcfS/YnhG [Dechloromonas aromatica RCB] gi|71847444|gb|AAZ46940.1| ErfK/YbiS/YcfS/YnhG [Dechloromonas aromatica RCB] Length = 160 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 Y+H P+ + + GC+R+RN +L + Sbjct: 115 IYIHGCPDSSEIGSPG---SHGCIRMRNADIVELFDLV 149 >gi|240137450|ref|YP_002961921.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Methylobacterium extorquens AM1] gi|240007418|gb|ACS38644.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Methylobacterium extorquens AM1] Length = 250 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 20/145 (13%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE--------- 96 + +A + I +A ++ A A +D W Sbjct: 110 PYPEAQIAAVIALARDIVVRRA-IPGPRVLAHSDVAPARKEDPGEDFPWERLAREGVGHW 168 Query: 97 LPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +P P+ +G++ V+ L+ L + G + ++ FDA + + V FQ Sbjct: 169 VPPAPVRDGRFFAMGDTGQPVEALQAMLALYGY---EQPVTGHFDAAMRAVVTAFQRHFR 225 Query: 151 -LDPSGMVDSSTLEAMNVPVDLRIR 174 G+ DSST+ + + R Sbjct: 226 PARIDGVADSSTITTLRDLIASRPA 250 >gi|119897880|ref|YP_933093.1| hypothetical protein azo1589 [Azoarcus sp. BH72] gi|119670293|emb|CAL94206.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 159 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%) Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKD 359 PG N + R Y+H T + + GC+R+RN +++L + Sbjct: 100 PG-RNRLGEVDTM---RRYVYIHGTGDDQPMGTPR---SHGCIRMRNREVVELFDLVRPG 152 Query: 360 TPTW 363 TP Sbjct: 153 TPVE 156 >gi|47215736|emb|CAG05747.1| unnamed protein product [Tetraodon nigroviridis] Length = 560 Score = 44.6 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + A + VE+A+K Q +GL +G +D T+EAM P D Sbjct: 3 LQKFGYLPPGDVRAQALRSPKTVETAIKAMQRFYGLSVTGSIDPQTIEAMRRPRCGVPDK 62 Query: 172 RIRQLQVNLMRIK 184 +L+ NL R + Sbjct: 63 FGPELKTNLRRKR 75 >gi|17546650|ref|NP_520052.1| phage-related protein (hydrolase) [Ralstonia solanacearum GMI1000] gi|17428949|emb|CAD15633.1| putative phage-related protein (hydrolase) [Ralstonia solanacearum GMI1000] Length = 268 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 3/91 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ L+ L G S + +DA +AV+ Q L G+ T Sbjct: 4 LKPGSTGAEVRELQRLLAGRGF---SAADTGEYDAATAAAVRAAQACFDLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 ++A+ V +L R L + Sbjct: 61 VQALRVGARQPGHLTAADLQRAAGTLGVPLA 91 >gi|312195803|ref|YP_004015864.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EuI1c] gi|311227139|gb|ADP79994.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EuI1c] Length = 313 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 16/74 (21%) Query: 301 DPGKINAMASTKI----------EFYSRNNT-YMHDTPEPILFNNVVRFETSGCVRVRNI 349 F N +H T +P + GC+R+RN Sbjct: 239 PANPAGPWGPYAFGLSGFSDVITNFDGGNGIIGLHGTNQPDRVGTD---VSMGCIRLRNS 295 Query: 350 I--DLDVWLLKDTP 361 L L TP Sbjct: 296 DITALAALLPVGTP 309 >gi|86138723|ref|ZP_01057296.1| hypothetical protein MED193_22786 [Roseobacter sp. MED193] gi|85824783|gb|EAQ44985.1| hypothetical protein MED193_22786 [Roseobacter sp. MED193] Length = 222 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 3/65 (4%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + +A++ FQ GL G+V T A+ P R+ Sbjct: 7 PGPVDGIRGKMTSNAIRRFQQSVGLLADGIVGPMTYAALFGPPATGQV---HRFDRMPWF 63 Query: 187 LEQKM 191 E Sbjct: 64 DEANR 68 >gi|306843211|ref|ZP_07475823.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO2] gi|306286601|gb|EFM58176.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO2] Length = 268 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSS 160 L G V+ L+ L + G ++ FD E +K FQ + G+ D S Sbjct: 195 LARGEQGQPVEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 161 TLE 163 T++ Sbjct: 252 TID 254 >gi|306844341|ref|ZP_07476933.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO1] gi|306275413|gb|EFM57154.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO1] Length = 268 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSS 160 L G V+ L+ L + G ++ FD E +K FQ + G+ D S Sbjct: 195 LARGEQGQPVEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 161 TLE 163 T++ Sbjct: 252 TID 254 >gi|161619391|ref|YP_001593278.1| protein ampD [Brucella canis ATCC 23365] gi|161336202|gb|ABX62507.1| Protein ampD [Brucella canis ATCC 23365] Length = 268 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSS 160 L G V+ L+ L + G ++ FD E +K FQ + G+ D S Sbjct: 195 LARGEQGQPVEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 161 TLE 163 T++ Sbjct: 252 TID 254 >gi|17986848|ref|NP_539482.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella melitensis bv. 1 str. 16M] gi|23502315|ref|NP_698442.1| N-acetylmuramoyl-L-alanine amidase [Brucella suis 1330] gi|62290337|ref|YP_222130.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 1 str. 9-941] gi|82700260|ref|YP_414834.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|148559422|ref|YP_001259335.1| N-acetylmuramoyl-L-alanine amidase [Brucella ovis ATCC 25840] gi|163843698|ref|YP_001628102.1| protein ampD [Brucella suis ATCC 23445] gi|189024568|ref|YP_001935336.1| peptidoglycan binding domain 1 [Brucella abortus S19] gi|225852925|ref|YP_002733158.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis ATCC 23457] gi|237815842|ref|ZP_04594839.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella abortus str. 2308 A] gi|254689636|ref|ZP_05152890.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 6 str. 870] gi|254694126|ref|ZP_05155954.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 3 str. Tulya] gi|254697778|ref|ZP_05159606.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 2 str. 86/8/59] gi|254702163|ref|ZP_05163991.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 5 str. 513] gi|254704700|ref|ZP_05166528.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 3 str. 686] gi|254708114|ref|ZP_05169942.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M163/99/10] gi|254710483|ref|ZP_05172294.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis B2/94] gi|254714476|ref|ZP_05176287.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M644/93/1] gi|254717374|ref|ZP_05179185.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M13/05/1] gi|254719473|ref|ZP_05181284.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. 83/13] gi|254730667|ref|ZP_05189245.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 4 str. 292] gi|256031977|ref|ZP_05445591.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M292/94/1] gi|256045072|ref|ZP_05447973.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. Rev.1] gi|256061499|ref|ZP_05451643.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella neotomae 5K33] gi|256114001|ref|ZP_05454778.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 3 str. Ether] gi|256257886|ref|ZP_05463422.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 9 str. C68] gi|256263595|ref|ZP_05466127.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 2 str. 63/9] gi|256369860|ref|YP_003107371.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella microti CCM 4915] gi|260546877|ref|ZP_05822616.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus NCTC 8038] gi|260565329|ref|ZP_05835813.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. 16M] gi|260566052|ref|ZP_05836522.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 4 str. 40] gi|260755165|ref|ZP_05867513.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 6 str. 870] gi|260758384|ref|ZP_05870732.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 4 str. 292] gi|260762210|ref|ZP_05874553.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 2 str. 86/8/59] gi|260884179|ref|ZP_05895793.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 9 str. C68] gi|261214427|ref|ZP_05928708.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 3 str. Tulya] gi|261219206|ref|ZP_05933487.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M13/05/1] gi|261315618|ref|ZP_05954815.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M163/99/10] gi|261318055|ref|ZP_05957252.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis B2/94] gi|261322267|ref|ZP_05961464.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M644/93/1] gi|261325507|ref|ZP_05964704.1| N-acetylmuramoyl-L-alanine amidase [Brucella neotomae 5K33] gi|261752734|ref|ZP_05996443.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 5 str. 513] gi|261755394|ref|ZP_05999103.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 3 str. 686] gi|265984481|ref|ZP_06097216.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. 83/13] gi|265989088|ref|ZP_06101645.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M292/94/1] gi|265991501|ref|ZP_06104058.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. Rev.1] gi|265995339|ref|ZP_06107896.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 3 str. Ether] gi|294852769|ref|ZP_06793442.1| N-acetylmuramoyl-L-alanine amidase [Brucella sp. NVSL 07-0026] gi|297248723|ref|ZP_06932441.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 5 str. B3196] gi|306839252|ref|ZP_07472069.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. NF 2653] gi|17982484|gb|AAL51746.1| anhydro-n-acetylmuramyl-tripeptide amidase [Brucella melitensis bv. 1 str. 16M] gi|23348293|gb|AAN30357.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella suis 1330] gi|62196469|gb|AAX74769.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella abortus bv. 1 str. 9-941] gi|82616361|emb|CAJ11418.1| Putative peptidoglycan binding domain 1:N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella melitensis biovar Abortus 2308] gi|148370679|gb|ABQ60658.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella ovis ATCC 25840] gi|163674421|gb|ABY38532.1| Protein ampD [Brucella suis ATCC 23445] gi|189020140|gb|ACD72862.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19] gi|225641290|gb|ACO01204.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis ATCC 23457] gi|237789140|gb|EEP63351.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella abortus str. 2308 A] gi|256000023|gb|ACU48422.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella microti CCM 4915] gi|260095927|gb|EEW79804.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus NCTC 8038] gi|260151397|gb|EEW86491.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. 16M] gi|260155570|gb|EEW90650.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 4 str. 40] gi|260668702|gb|EEX55642.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 4 str. 292] gi|260672642|gb|EEX59463.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 2 str. 86/8/59] gi|260675273|gb|EEX62094.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 6 str. 870] gi|260873707|gb|EEX80776.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 9 str. C68] gi|260916034|gb|EEX82895.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 3 str. Tulya] gi|260924295|gb|EEX90863.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M13/05/1] gi|261294957|gb|EEX98453.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M644/93/1] gi|261297278|gb|EEY00775.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis B2/94] gi|261301487|gb|EEY04984.1| N-acetylmuramoyl-L-alanine amidase [Brucella neotomae 5K33] gi|261304644|gb|EEY08141.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M163/99/10] gi|261742487|gb|EEY30413.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 5 str. 513] gi|261745147|gb|EEY33073.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 3 str. 686] gi|262766452|gb|EEZ12241.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 3 str. Ether] gi|263002285|gb|EEZ14860.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. Rev.1] gi|263093644|gb|EEZ17649.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 2 str. 63/9] gi|264661285|gb|EEZ31546.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M292/94/1] gi|264663073|gb|EEZ33334.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. 83/13] gi|294821358|gb|EFG38357.1| N-acetylmuramoyl-L-alanine amidase [Brucella sp. NVSL 07-0026] gi|297175892|gb|EFH35239.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 5 str. B3196] gi|306405799|gb|EFM62061.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. NF 2653] gi|326409467|gb|ADZ66532.1| Putative peptidoglycan binding domain 1 [Brucella melitensis M28] gi|326539174|gb|ADZ87389.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis M5-90] Length = 268 Score = 44.6 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSS 160 L G V+ L+ L + G ++ FD E +K FQ + G+ D S Sbjct: 195 LARGEQGQPVEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 161 TLE 163 T++ Sbjct: 252 TID 254 >gi|229544310|ref|ZP_04433369.1| carboxyl-terminal protease [Bacillus coagulans 36D1] gi|229325449|gb|EEN91125.1| carboxyl-terminal protease [Bacillus coagulans 36D1] Length = 497 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L L + S V+ + L G + FD ++AV+ FQM + P+G+++ T Sbjct: 410 LKLYSVSEDVKTAEKMLKALGY--NPGRVDGYFDWNTKTAVEAFQMHEKMQPTGIINGDT 467 >gi|47202237|emb|CAF87535.1| unnamed protein product [Tetraodon nigroviridis] Length = 279 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + A + VE+A+K Q +GL +G +D T+EAM P D Sbjct: 3 LQKFGYLPPGDVRAQALRSPKTVETAIKAMQRFYGLSVTGSIDPQTIEAMRRPRCGVPDK 62 Query: 172 RIRQLQVNLMRIK 184 +L+ NL R + Sbjct: 63 FGPELKTNLRRKR 75 >gi|209885148|ref|YP_002289005.1| lytic murein transglycosylase [Oligotropha carboxidovorans OM5] gi|209873344|gb|ACI93140.1| lytic murein transglycosylase [Oligotropha carboxidovorans OM5] Length = 409 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +Q ++ RL +G + G AVK FQ R GL P G L + Sbjct: 351 AEIQEVQTRLTKAGF--DTGGTDGRVGNDTMKAVKDFQTRAGLTPDGYAGLKVLARLRQ 407 >gi|114568688|ref|YP_755368.1| peptidoglycan binding domain-containing protein [Maricaulis maris MCS10] gi|114339150|gb|ABI64430.1| Peptidoglycan-binding domain 1 protein [Maricaulis maris MCS10] Length = 450 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 113 RLRER-LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LR+R L G + + + +V+ FQ G D +G++ + Sbjct: 234 ALRQRALAALGYY--NGEVDGNYGPMTRRSVRDFQSDLGFDLTGVLTPA 280 >gi|315649800|ref|ZP_07902883.1| carboxyl-terminal protease [Paenibacillus vortex V453] gi|315274774|gb|EFU38155.1| carboxyl-terminal protease [Paenibacillus vortex V453] Length = 489 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V+ + L G + FD E AVK FQ ++ L G+++ Sbjct: 399 STDVKNAQIMLEAVGY--KTGRSDGYFDRNTEKAVKSFQSKNKLKADGIIN 447 >gi|298293897|ref|YP_003695836.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296930408|gb|ADH91217.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 225 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 43/191 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + ++ +R + + + ++V+ V LR V VG+ + Sbjct: 54 PAVDLSKVDPRFLRQEVAYQTRYPAGTIVVDPNERHAYLVLGNGRALRYGVGVGKEEGFN 113 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I R P W ++I ++ Sbjct: 114 FRGEGIIARKASWPRWTPTPNMIAREP--------------------------------- 140 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVR 345 + G N + + Y +H T EP +SGCVR Sbjct: 141 --ERYGPYANGMAGGLDNPLGPRALYIYKDGQDTLYRLHGTTEPWTIGT---MVSSGCVR 195 Query: 346 V--RNIIDLDV 354 ++IIDL Sbjct: 196 FMNQDIIDLFR 206 >gi|297194196|ref|ZP_06911594.1| membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197722549|gb|EDY66457.1| membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 434 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 5/80 (6%) Query: 91 RGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQMR 148 + G P P R G SS V +L +RL+ G + G + V+ FQ Sbjct: 353 QAGTPAFPGRAHFRPGRSSTYVTQLGKRLVERGYGKHYTSGPDPRWREADRRNVQAFQRA 412 Query: 149 H---GLDPSGMVDSSTLEAM 165 G G T + Sbjct: 413 QGWRGAAADGYPGPETWRRL 432 >gi|17231318|ref|NP_487866.1| hypothetical protein all3826 [Nostoc sp. PCC 7120] gi|17132960|dbj|BAB75525.1| all3826 [Nostoc sp. PCC 7120] Length = 241 Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 VQ L+ L +P + E+A+K FQ +H L+ +G+ + + + ++ Sbjct: 96 VQILQANLNAVLKTNPPLPRDQFYGPKTEAAIKEFQKKHQLEATGIANLALRQKLDEEAK 155 Query: 171 LRIRQ 175 I + Sbjct: 156 KVISK 160 Score = 40.0 bits (92), Expect = 0.82, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 7/90 (7%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNVPVDLRI 173 R L G + + DA + A+ FQ + L G+ T + + Sbjct: 42 RTVLRGLGY-NVKVTNTPLSDAETKKAISEFQKGYKLTPVDGIAGPKTQDF----AANIV 96 Query: 174 RQLQVNLMR-IKKLLEQKMGLRYVLVNIPA 202 + LQ NL +K Y A Sbjct: 97 QILQANLNAVLKTNPPLPRDQFYGPKTEAA 126 >gi|255647293|gb|ACU24113.1| unknown [Glycine max] Length = 357 Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 12/116 (10%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE-SAVKLFQMRHGLDPSGMVDSSTLEAM 165 S+ V +++ L G ++ S LS + D SA+K +Q L P+G +++ TL+ M Sbjct: 74 SAPPVSLIKDYLSNYGYIESSGPLSNSMDQETIISAIKTYQQYFSLQPTGKLNNETLQQM 133 Query: 166 N-VPVDLRIRQLQVNLMRI---------KKLLEQKMGLRYV-LVNIPAASLEAVEN 210 + + + + N + + ++ IPA + + Sbjct: 134 SFLRCGVPDINIDYNFTDDNMSYPKAGHRWFPHTNLTYGFLPENQIPANMTKVFRD 189 >gi|229179582|ref|ZP_04306934.1| Cell wall biogenesis enzyme (N-terminal domain to N-Acetylmuramoyl-L-alanine amidase [Bacillus cereus 172560W] gi|228603876|gb|EEK61345.1| Cell wall biogenesis enzyme (N-terminal domain to N-Acetylmuramoyl-L-alanine amidase [Bacillus cereus 172560W] Length = 277 Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 12/182 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ V L+ LI G ++ FD K+FQ + L P+G+V+ +T Sbjct: 7 LKLGSTGYYVTVLQLNLIGLGVNYEKLAITGFFDEKTHKCTKIFQEKTKLKPNGIVEVNT 66 Query: 162 LEAMNVPV---DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 +++ V +++ + ++ + +G + R+ Sbjct: 67 WKSLFENVILIQKKLQSIGFYFGQLDGVFGLSTTQATQEYQK---EQNLYPSGDITPRTR 123 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + + Q+ S I+ +PY ++ K+ + L + + L + Sbjct: 124 HKLFNPNSQSEFYTSSIHLQSLHPYV----EMLAKEFLQLTKTNG--LDVRIYSVFRSWS 177 Query: 279 KE 280 ++ Sbjct: 178 EQ 179 >gi|15893844|ref|NP_347193.1| 1,4-beta-N-acetylmuramidase [Clostridium acetobutylicum ATCC 824] gi|462559|sp|P34020|LYS_CLOAB RecName: Full=Autolytic lysozyme; AltName: Full=1,4-beta-N-acetylmuramidase; AltName: Full=Autolysin gi|15023420|gb|AAK78533.1|AE007570_12 Autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases ; peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|144845|gb|AAA23250.1| autolytic lysozyme [Clostridium acetobutylicum] gi|325507970|gb|ADZ19606.1| Autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolase [Clostridium acetobutylicum EA 2018] Length = 324 Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 104 LGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G ++ +++ L I L + E+A+K FQ GL G+ ++T Sbjct: 194 PGQGGDDNIKAIQQDLNIL--LKRGLEVDGIEGPETEAAIKDFQSIMGLTVDGIWGTNTS 251 Query: 163 EAMNV 167 A Sbjct: 252 GAAQQ 256 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 17/42 (40%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F + ++ V +Q GL G+V S+T + Sbjct: 279 YRVGASVDGTFGSGTKAKVAAWQSNQGLMADGVVGSATWSKL 320 >gi|84500323|ref|ZP_00998589.1| hypothetical protein OB2597_10284 [Oceanicola batsensis HTCC2597] gi|84392257|gb|EAQ04525.1| hypothetical protein OB2597_10284 [Oceanicola batsensis HTCC2597] Length = 389 Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G S + RL+ RL+ G + A AV+ Q GL Sbjct: 319 GAPVFDAGNPEPGLSDKQMIRLQRRLVARGH--DVGEVDGILGAKTREAVQQVQQELGLP 376 Query: 153 PSGMVDSSTLEAM 165 + L + Sbjct: 377 ADAWPTPALLNRL 389 >gi|91782629|ref|YP_557835.1| putative phage-related protein (hydrolase) [Burkholderia xenovorans LB400] gi|91686583|gb|ABE29783.1| Putative phage-related protein (hydrolase) [Burkholderia xenovorans LB400] Length = 267 Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 4/70 (5%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S SV L+ L P + +SA++ FQ R GL +GMV T A+ Sbjct: 7 SGTSVVFLQRTLAQEN---PRLKVDGLSGPDTQSALRRFQQRRGLPDTGMVCEQT-RALL 62 Query: 167 VPVDLRIRQL 176 L Sbjct: 63 TQAARHAGLL 72 >gi|118374921|ref|XP_001020648.1| Peptidoglycan binding domain containing protein [Tetrahymena thermophila] gi|89302415|gb|EAS00403.1| Peptidoglycan binding domain containing protein [Tetrahymena thermophila SB210] Length = 873 Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V +++ L G + + + E+AV+ +Q ++ L G++ + + Sbjct: 165 DEKVLKVQNLLKKQGY---NIETDGFYTSQTENAVREYQKKNNLFEDGVISQELINKIEG 221 Query: 168 PVDL 171 Sbjct: 222 KAQK 225 >gi|332668633|ref|YP_004451640.1| peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] gi|332337670|gb|AEE44253.1| Peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] Length = 368 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 ++P R L G V++L++ L G L F A +AV+ +Q G Sbjct: 106 GDVPAFRALTSGLEGPDVRQLQQLLADLGHL--RSAPDGRFRASTTAAVRSWQKASGRPV 163 Query: 154 SGMV 157 +G V Sbjct: 164 TGEV 167 >gi|332019904|gb|EGI60365.1| Matrix metalloproteinase-14 [Acromyrmex echinatior] Length = 513 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 20/180 (11%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------- 168 L G L P + AF +A + +A++ FQ GL+ +G ++ T + M P Sbjct: 46 LAQYGYLPPINPENGAFLSEAKLTAAIEEFQAFAGLNITGELNEETAKLMATPRCGVKDK 105 Query: 169 ----VDLRIRQLQVNLMRIKK------LLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 D R ++ + R + + + GL V A+ +V G+ L T Sbjct: 106 VGPAADGRSKRYALQGSRWRTKNLTYKISKYPTGLNKQEVEKEIANAFSVWTGETDLTFT 165 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 G + + + + P + + D + + +G Sbjct: 166 RKTGH-ENVHIEIRFEVGEHGDGDPFDGPGGTLAHAYFPVYGGDAHFDDSERWTIRSYRG 224 >gi|315657286|ref|ZP_07910168.1| ErfK/YbiS/YcfS/YnhG family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491758|gb|EFU81367.1| ErfK/YbiS/YcfS/YnhG family protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 501 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 49/217 (22%), Gaps = 32/217 (14%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + G + + T A++ + + K + G+ + V V+ Sbjct: 302 MTKDGYLLTLTKMALDSKKVSNNETIAAEITAALKAGQNYRGVFEMAVQEGKFHDTVVDE 361 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM----MALLRQDPQYL 266 G + + + + P + + + L Sbjct: 362 NLPRPPYKAKPGEKFISIDLTNHTVAAWEGDKVVWGPVEAVHGSLPSPTYPGIFHVQTKL 421 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 + ++ + W ++ H T Sbjct: 422 VNAHMKNDNAWDGAYDTWS-PWTMYYHGDYAV-------------------------HGT 455 Query: 327 PEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + GCV + N +L W TP Sbjct: 456 NTRWNWVQTNYGGSHGCVNLKPANAKELFNWARVGTP 492 >gi|288941575|ref|YP_003443815.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] gi|288896947|gb|ADC62783.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] Length = 161 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 27/181 (14%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH----SRINRIMFNPYWVIPR 248 R ++V+I A L + + R V G ++R+ P Sbjct: 2 DRRLVVDIDAQRLTLFIDARPVRRYPVSTGANGVGEDYGSGCTPRGLHRVRLRIGDGCPV 61 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + + L + ++ + + W + R G ++ + Sbjct: 62 GTVFRGRRPTGEIHDAALAAAHPE------RDWILTRILWLT---GCEPGRNRGGSVDTL 112 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y+H P+ + GC+R+RN +DL L + TP + I Sbjct: 113 RRF---------IYIHGCPDSEPMGVPR---SHGCIRMRN-LDLIE-LFEQTPNGTPVEI 158 Query: 369 E 369 Sbjct: 159 R 159 >gi|240849841|ref|YP_002971229.1| membrane-bound lytic murein transglycosylase [Bartonella grahamii as4aup] gi|240266964|gb|ACS50552.1| membrane-bound lytic murein transglycosylase [Bartonella grahamii as4aup] Length = 418 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L+ RL G + + A+K FQ+RHGL +G Sbjct: 364 KELQSRLSALGYYKGN--VDGKIGTASRKAIKAFQLRHGLKANG 405 >gi|298346210|ref|YP_003718897.1| hypothetical protein HMPREF0573_11084 [Mobiluncus curtisii ATCC 43063] gi|298236271|gb|ADI67403.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] Length = 492 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 49/217 (22%), Gaps = 32/217 (14%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + G + + T A++ + + K + G+ + V V+ Sbjct: 293 MTKDGYLLTLTKMALDSKKVSNNETIAAEITAALKAGQNYRGVFEMAVQEGKFHDTVVDE 352 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM----MALLRQDPQYL 266 G + + + + P + + + L Sbjct: 353 NLPRPPYKAKPGEKFISIDLTNHTVAAWEGDKVVWGPVEAVHGSLPSPTYPGIFHVQTKL 412 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 + ++ + W ++ H T Sbjct: 413 VNAHMKNDNAWDGAYDTWS-PWTMYYHGDYAV-------------------------HGT 446 Query: 327 PEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + GCV + N +L W TP Sbjct: 447 NTRWNWVQTNYGGSHGCVNLKPANAKELFNWARVGTP 483 >gi|91216210|ref|ZP_01253178.1| hypothetical protein P700755_06014 [Psychroflexus torquis ATCC 700755] gi|91185727|gb|EAS72102.1| hypothetical protein P700755_06014 [Psychroflexus torquis ATCC 700755] Length = 263 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G +R++E L D F E V+ FQ + ++ +G+V+ Sbjct: 18 PGDIKRGRRGPKAKRVQEWLS---FHDFKTSTDGDFGPATELCVRDFQKENKINETGIVN 74 Query: 159 SSTLEAMNVPVDLRIRQL 176 T EA+ P+ + L Sbjct: 75 QITWEALVKPMTDVLTDL 92 >gi|1170043|sp|P45754|GSPA_AERHY RecName: Full=General secretion pathway protein A gi|551216|emb|CAA57225.1| ExeA [Aeromonas hydrophila] Length = 547 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 9/158 (5%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIP-----IISKETIAQTEKAIAFYQDILSRGGW 94 + H + D + + P +I ++ + ++ + W Sbjct: 377 LQALQHPALISLTDETGGIYYATLVNLGPDKANLLIGNQSWQVDRQWLSDFWGGSYTLLW 436 Query: 95 PELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +GN++ VQ L L + L FDA +++ ++ FQ GL+ Sbjct: 437 RMPKGGVALIGNNAGATQVQWLDNALSRA--LQQPDRKVRRFDAELKNKLQQFQREQGLN 494 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 P G+ S+TL +NV + +L+ R Sbjct: 495 PDGIAGSNTLLRLNVMAGEPMPKLEDESQRASTPATPD 532 >gi|120609665|ref|YP_969343.1| peptidoglycan-binding domain-containing protein [Acidovorax citrulli AAC00-1] gi|120588129|gb|ABM31569.1| Peptidoglycan-binding domain 1 protein [Acidovorax citrulli AAC00-1] Length = 356 Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ + RL G + ++ FQ GL +G +D++T +A++ Sbjct: 302 VREAQARLNALGY--DVGAPDGGMGPKTANGLRAFQRDKGLPVTGRLDAATTDALSR 356 >gi|28211938|ref|NP_782882.1| spore cortex-lytic enzyme pre-pro-form [Clostridium tetani E88] gi|28204381|gb|AAO36819.1| spore cortex-lytic enzyme pre-pro-form [Clostridium tetani E88] Length = 450 Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +GN V+ ++ L D P + + A +++VK+FQ L + Sbjct: 329 PGYTLTIGNRGRDVRTIQIYLNRIADNYPAIPKVAVDSVYGASTQNSVKIFQGVFSLPQT 388 Query: 155 GMVDSSTLEAMN 166 G VD +T ++ Sbjct: 389 GNVDYATWYKIS 400 >gi|65321540|ref|ZP_00394499.1| COG1376: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012] Length = 90 Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 +H T +P + + GC+R++ +L P ++ I + K+ + Sbjct: 13 YGIHGTNQPSSIGK---YISQGCIRMKKND--VEYLFDRIPIGTKVWIVKSKKSFQ 63 >gi|297182413|gb|ADI18577.1| membrane-bound lytic murein transglycosylase b [uncultured Oceanospirillales bacterium HF4000_23O15] Length = 385 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S +V+ L+ERL G S SA++ +Q L G LEA+ Sbjct: 326 MSVANVKELQERLNALGF--NSGEPDGRVGRRTRSAIRSYQGDSDLPMDGYASIQLLEAV 383 Query: 166 N 166 Sbjct: 384 R 384 >gi|163850374|ref|YP_001638417.1| N-acetylmuramoyl-L-alanine amidase [Methylobacterium extorquens PA1] gi|163661979|gb|ABY29346.1| N-acetylmuramoyl-L-alanine amidase family 2 [Methylobacterium extorquens PA1] Length = 250 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 22/146 (15%) Query: 46 SIVNDRFDNFLARVDMGI-DSDIPIISKETIAQTEKAIAFYQDILSRGGWPE-------- 96 + +A + IP +A ++ A A +D W Sbjct: 110 PYPEAQIAAVIALARDIVLRHAIP--GPRVLAHSDVAPARKEDPGEDFPWERLAREGVGH 167 Query: 97 -LPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 +P P+ +G++ V+ L+ L + G + ++ FDA + + V FQ Sbjct: 168 WVPPAPVRDGRFFAMGDTGQPVEALQAMLALYGY---EQPVTGHFDAAMRAVVTAFQRHF 224 Query: 150 G-LDPSGMVDSSTLEAMNVPVDLRIR 174 G+ DSST+ + + R Sbjct: 225 RPARIDGVADSSTITTLRDLIASRPA 250 >gi|218529961|ref|YP_002420777.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218522264|gb|ACK82849.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 264 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + +H T EP +SGC+R+ N Sbjct: 163 AGGLGNPLGPRALYLFEGPRDTLYRIHGTTEPQTIGTD---VSSGCIRMFN 210 >gi|311693485|gb|ADP96358.1| peptidoglycan-binding domain 1 protein-like protein [marine bacterium HP15] Length = 139 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L+ L +G +S D SA+ FQ +GL +G +D T EA+ + Sbjct: 30 DEIVALKNALYGAGY--DITNVSPQMDDSTRSALTRFQQDNGLQATGNLDDPTKEALGM 86 >gi|167045565|gb|ABZ10215.1| putative peptidoglycan binding domain protein [uncultured marine crenarchaeote HF4000_APKG10I20] Length = 360 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 2/60 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G L++ L + G + + A+ Q H + G+ + Sbjct: 281 PESLGIGYRGKEAIWLQKNLRLLGYF--QGREAPLYGPKTVQAMMKLQRNHSIKDDGIFN 338 >gi|328555228|gb|AEB25720.1| carboxy-terminal processing serine protease, cleaves SpoIVFA, this results in processing of pro-SigK [Bacillus amyloliquefaciens TA208] gi|328913589|gb|AEB65185.1| carboxy-terminal processing serine protease, cleaves SpoIVFA, this results in processing of pro-SigK [Bacillus amyloliquefaciens LL3] Length = 466 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +PL +S V+ + L G F ++ AV FQ R+ LD + ++D Sbjct: 375 KQPLQPDMNSADVKHAQILLKGLGFDPGRA--DGYFSKTMKKAVLAFQDRNKLDKTAVID 432 Query: 159 SSTLEAMNV 167 T E MN Sbjct: 433 KKTAEKMNQ 441 >gi|308175255|ref|YP_003921960.1| carboxy-terminal processing serine protease [Bacillus amyloliquefaciens DSM 7] gi|307608119|emb|CBI44490.1| carboxy-terminal processing serine protease, cleaves SpoIVFA, this results in processing of pro-SigK [Bacillus amyloliquefaciens DSM 7] Length = 466 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +PL +S V+ + L G F ++ AV FQ R+ LD + ++D Sbjct: 375 KQPLQPDMNSADVKHAQILLKGLGFDPGRA--DGYFSKTMKKAVLAFQDRNKLDKTAVID 432 Query: 159 SSTLEAMNV 167 T E MN Sbjct: 433 KKTAEKMNQ 441 >gi|222147474|ref|YP_002548431.1| hypothetical protein Avi_0601 [Agrobacterium vitis S4] gi|221734464|gb|ACM35427.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 1275 Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 24/132 (18%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP------------ 98 F ++ D + +E +A++ + A + S W +P Sbjct: 1146 WFALAASQGDKDAAA-----KQEEVARSMQPAALARAKASVQQWQTMPMNADANTVNLPD 1200 Query: 99 ---IRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 + L G+ +V+ ++ L +G + A +A+K FQ G +P Sbjct: 1201 EWVGKSLKTGSVDMEKAVRNIQAILNKNGF--NAGEPDGKLGARTVAAIKAFQTSVGQEP 1258 Query: 154 SGMVDSSTLEAM 165 SG V + ++A+ Sbjct: 1259 SGKVSNELVKAL 1270 >gi|284028620|ref|YP_003378551.1| NLP/P60 protein [Kribbella flavida DSM 17836] gi|283807913|gb|ADB29752.1| NLP/P60 protein [Kribbella flavida DSM 17836] Length = 281 Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 8/76 (10%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 +RG P L ++ +V+ +++ L + + +AV FQ R Sbjct: 81 ARGNKPIATKPLLRYADAGSAVRYVQKSL--------DVPAGGWYGSATRTAVANFQRRV 132 Query: 150 GLDPSGMVDSSTLEAM 165 GL +G + +T ++ Sbjct: 133 GLPRTGTMTVNTWRSL 148 >gi|239630835|ref|ZP_04673866.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065157|ref|YP_003787180.1| YbfG [Lactobacillus casei str. Zhang] gi|239527118|gb|EEQ66119.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437564|gb|ADK17330.1| YbfG [Lactobacillus casei str. Zhang] Length = 716 Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 28/166 (16%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE---TIAQTEKAIAFYQDILSRG- 92 DE + + V + P + TI + I + G Sbjct: 3 DEAVRAVQK-----WLNKTYGSVPGFV--AAPENGQTGWPTIYSLRMGLQHEIGISAIGE 55 Query: 93 GWPELPI-------RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G+ + L G Q ++ G + F +AVK Sbjct: 56 GFGDTTKNALAPVVGSLKPGYKGNIAQLIQGAFWCKG--ISPVDFNNEFTNNTLNAVKEL 113 Query: 146 QMRHGLDPSGMVDSSTLEA--------MNVPVDLRIRQLQVNLMRI 183 Q G+ G V + + A + D ++R +Q L R Sbjct: 114 QQDAGIAADGSVTVAFMAALFDMAAFVLVSSGDAKVRTMQQALNRK 159 >gi|191636854|ref|YP_001986020.1| YbfG [Lactobacillus casei BL23] gi|190711156|emb|CAQ65162.1| YbfG [Lactobacillus casei BL23] gi|327380894|gb|AEA52370.1| Peptidoglycan-binding protein [Lactobacillus casei LC2W] gi|327384058|gb|AEA55532.1| Peptidoglycan-binding protein [Lactobacillus casei BD-II] Length = 716 Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 28/166 (16%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE---TIAQTEKAIAFYQDILSRG- 92 DE + + V + P + TI + I + G Sbjct: 3 DEAVRAVQK-----WLNKTYGSVPGFV--AAPENGQTGWPTIYSLRMGLQHEIGISAIGE 55 Query: 93 GWPELPI-------RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G+ + L G Q ++ G + F +AVK Sbjct: 56 GFGDTTKNALAPVVGSLKPGYKGNIAQLIQGAFWCKG--ISPVDFNNEFTNNTLNAVKEL 113 Query: 146 QMRHGLDPSGMVDSSTLEA--------MNVPVDLRIRQLQVNLMRI 183 Q G+ G V + + A + D ++R +Q L R Sbjct: 114 QQDAGIAADGSVTVAFMAALFDMAAFVLVSSGDAKVRTMQQALNRK 159 >gi|23099120|ref|NP_692586.1| hypothetical protein OB1665 [Oceanobacillus iheyensis HTE831] gi|22777348|dbj|BAC13621.1| hypothetical protein [Oceanobacillus iheyensis HTE831] Length = 279 Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 14/101 (13%) Query: 77 QTEKAIAFYQ---------DILSRGGWPELPIR---PLHLGNSSVSVQRLRERLIISGDL 124 + AI YQ ++ G W + + G L+ L I+G Sbjct: 179 TIKAAIKGYQIELNKQFNANLTVDGIWGQKTKSATVTIASGAKGNITWILQAMLYING-- 236 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + KGL F +AV+ FQ + + G T E + Sbjct: 237 EDPKGLDGIFGDNTNNAVRSFQQKESILVDGKAGKVTWEKL 277 >gi|307944914|ref|ZP_07660251.1| N-acetylmuramoyl-L-alanine amidase AmiD [Roseibium sp. TrichSKD4] gi|307771838|gb|EFO31062.1| N-acetylmuramoyl-L-alanine amidase AmiD [Roseibium sp. TrichSKD4] Length = 254 Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 95 PELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 PE+ R + G S V+ L+ L I G ++ FDA AV+ FQ + + Sbjct: 172 PEVTGRGIFMQEGESGQPVEALQSMLAIFGY---RMEVTGQFDATTRLAVEAFQRHYRPE 228 Query: 153 P-SGMVDSSTLE 163 G+VD ST+E Sbjct: 229 QVDGIVDQSTIE 240 >gi|167044834|gb|ABZ09501.1| putative peptidoglycan binding domain protein [uncultured marine crenarchaeote HF4000_APKG8D22] Length = 335 Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 2/60 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G L++ L + G + + A+ Q H + G+ + Sbjct: 256 PESLGIGYRGKEAIWLQKNLRLLGYF--QGREAPLYGPKTVQAMMKLQRNHSIKDDGIFN 313 >gi|304390030|ref|ZP_07371984.1| ErfK/YbiS/YcfS/YnhG family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326512|gb|EFL93756.1| ErfK/YbiS/YcfS/YnhG family protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 501 Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 49/217 (22%), Gaps = 32/217 (14%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + G + + T A++ + + K + G+ + V V+ Sbjct: 302 MTKDGYLLTLTKMALDSKKVSNNETIAAEITAALKAGQNYRGVFEMAVQEGKFHDTVVDE 361 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM----MALLRQDPQYL 266 G + + + + P + + + L Sbjct: 362 NLPRPPYKAKPGEKFISIDLTNHTVAAWEGDKVVWGPVEAVHGSLPSPTYPGIFHVQTKL 421 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 + ++ + W ++ H T Sbjct: 422 VNAHMKNDNAWDGAYDTWS-PWTMYYHGDYAV-------------------------HGT 455 Query: 327 PEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + GCV + N +L W TP Sbjct: 456 NTRWNWVQTNYGGSHGCVNLKPANAKELFNWARVGTP 492 >gi|117926745|ref|YP_867362.1| ErfK/YbiS/YcfS/YnhG family protein [Magnetococcus sp. MC-1] gi|117610501|gb|ABK45956.1| ErfK/YbiS/YcfS/YnhG family protein [Magnetococcus sp. MC-1] Length = 181 Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 13/55 (23%) Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 F Q PG Y+H TP + GCVR+ + L Sbjct: 122 FNQGPGVD----------SYERYIYIHGTPHLADLGQP---VSHGCVRMHSAHLL 163 >gi|315654793|ref|ZP_07907698.1| ErfK/YbiS/YcfS/YnhG family protein [Mobiluncus curtisii ATCC 51333] gi|315490754|gb|EFU80374.1| ErfK/YbiS/YcfS/YnhG family protein [Mobiluncus curtisii ATCC 51333] Length = 492 Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 21/217 (9%), Positives = 49/217 (22%), Gaps = 32/217 (14%) Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 + G + + T A++ + + K + G+ + V V+ Sbjct: 293 MTKDGYLLTLTKMALDSKKVSNNETIAAEITAALKAGQNYRGVFEMAVQEGKFHDTVVDE 352 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM----MALLRQDPQYL 266 G + + + + P + + + L Sbjct: 353 NLPRPPYKAKPGEKFISIDLTNHTVAAWEGDKVVWGPVEAVHGSLPSPTYPGIFHVQTKL 412 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 + ++ + W ++ H T Sbjct: 413 VNAHMKNDNAWDGAYDTWS-PWTMYYHGDYAV-------------------------HGT 446 Query: 327 PEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + GCV + N +L W TP Sbjct: 447 NTRWNWVQTNYGGSHGCVNLKPANAKELFNWARVGTP 483 >gi|146278670|ref|YP_001168829.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] gi|145556911|gb|ABP71524.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] Length = 216 Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 48/170 (28%) Query: 183 IKKLLEQK-MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + VLV+I + +L E+G+ L V + T + + + + Sbjct: 72 LDWQPYFSSLRNGAVLVDITSRALHYWSEDGQTYLLFPTSVPLSEDLTRRGRTEVVQKVV 131 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W ++ + ++P++ Sbjct: 132 APPWRPTPAMKE--------RNPEW-------------------------------PDMV 152 Query: 301 DPG-KINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + S + Y +H T + R ++GC+ + N Sbjct: 153 PGGAPDNPLGSHALYLS--WTYYRIHGTHDTRKIG---RKSSNGCIGLYN 197 >gi|309791236|ref|ZP_07685768.1| Peptidoglycan-binding domain 1 protein [Oscillochloris trichoides DG6] gi|308226798|gb|EFO80494.1| Peptidoglycan-binding domain 1 protein [Oscillochloris trichoides DG6] Length = 500 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GW R G + L+ RL G + F +A++ FQ L Sbjct: 431 GWQPPASRVFSAGAAD-----LQARLNAQGF--AAGTPDGYFGDQTRTALEAFQTSRNLP 483 Query: 153 PSGMVDSSTLEAM 165 S +D +T +A+ Sbjct: 484 VSPNLDCATWQAL 496 >gi|254473060|ref|ZP_05086458.1| lytic murein transglycosylase [Pseudovibrio sp. JE062] gi|211957781|gb|EEA92983.1| lytic murein transglycosylase [Pseudovibrio sp. JE062] Length = 405 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 18/122 (14%) Query: 43 SYHSIVNDRFDNFLARVDMGI---------DSDIPIISKETIAQTEKAIAFYQDILSRGG 93 + + A + + + + ++ Sbjct: 279 PRGGDMARLYTPAGANGPAFLLLKNFYVIKRYNNSNAYALGVGHLSDRLLGLSGFVAD-- 336 Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP RPL + L++RL G + A++ +Q GL P Sbjct: 337 WPR-GDRPLTF----SEKKALQKRLSEMGY--KPGAVDGKIGQRTRQAIQAYQKASGLVP 389 Query: 154 SG 155 G Sbjct: 390 DG 391 >gi|145341529|ref|XP_001415859.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576082|gb|ABO94151.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 355 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 12/90 (13%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLD 152 WP L + + V +++ L G + + F + +A+ FQ + L Sbjct: 246 WP-----VLREDDGGMEVHKMQVILSEQGFDSGEEDMEYWYFGSTTSAALLTFQASNRLP 300 Query: 153 PSGMVDSSTLEA------MNVPVDLRIRQL 176 +G+ D +T A +++ + ++ Sbjct: 301 ETGITDLNTWRALLGDELLDISPADALERI 330 Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 11/80 (13%) Query: 90 SRGGWPELPIRPLHLGNSSVSV---QRLRERLIISGDLDPSKGLSVAF-DAYVESAVKLF 145 G WP + + + + +L +G F + A+ F Sbjct: 88 RSGEWPLVKK-------NDDDIYLMTTIHYKLNEAGFWAGEDDEEDMFFGETTKVALLYF 140 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q G+ +G+VDS T A+ Sbjct: 141 QANAGIPETGLVDSDTWRAL 160 >gi|310825690|ref|YP_003958047.1| YkuG [Eubacterium limosum KIST612] gi|308737424|gb|ADO35084.1| YkuG [Eubacterium limosum KIST612] Length = 712 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V L+ L ++G + FD VE+AV FQ L+ G V ST A+ V Sbjct: 218 ALVYLLQYMLYVNGF--NPGSFNGIFDTGVENAVINFQSLMALEADGWVGLSTWAALLVS 275 >gi|297617864|ref|YP_003703023.1| peptidoglycan-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297145701|gb|ADI02458.1| Peptidoglycan-binding domain 1 protein [Syntrophothermus lipocalidus DSM 12680] Length = 167 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 25/165 (15%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 F+ L++ L + S + ++ + + ++ P + Sbjct: 8 FLVLMICSALIIGTTLGFISTREYLVPHLSKTYTDTG--TAKTNSADSDENQAPSVPDPN 65 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGN----------SSVSVQRLRERLIISGDL 124 + A Y + G + L + + V+ ++ L G Sbjct: 66 ASSI-AEKASYSALSRYGQPQTV--NSLRSSDAFASTKLLVLTENEVKEVKAMLQNLGYD 122 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 S + AVK FQ ++ L +G +D+ TL ++ V Sbjct: 123 ASS----------LPEAVKQFQEKNHLAATGYLDTETLTSIITQV 157 >gi|124007344|ref|ZP_01692051.1| putative peptidoglycan binding domain protein [Microscilla marina ATCC 23134] gi|123987177|gb|EAY26917.1| putative peptidoglycan binding domain protein [Microscilla marina ATCC 23134] Length = 338 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 13/136 (9%) Query: 99 IRPLHLGNSSV-SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 RPL G S ++++E L G + F E+AVK FQ + +G+V Sbjct: 2 KRPLKKGVSGTGETRKVQEFLKALGHYKGALDDD--FGPKTEAAVKEFQQKRF--VTGIV 57 Query: 158 DSSTLEAMNV-------PVDLRIRQLQVNLMRIKKLLEQKMGLRYV-LVNIPAASLEAVE 209 + T +A+ P + + ++ K + + + E Sbjct: 58 NEFTYDALEEAFAEKNPPPVPLTIKEKQTFLKAKGYYLGAIDGMFGPSSKKAEKDFKLAE 117 Query: 210 NGKVGLRSTVIVGRVD 225 + + D Sbjct: 118 GLDARTNMRAALVKPD 133 >gi|84686736|ref|ZP_01014623.1| ErfK/YbiS/YcfS/YnhG family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665167|gb|EAQ11646.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacterales bacterium HTCC2654] Length = 160 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMH 324 L + EK K P + R + G N + + + + +H Sbjct: 62 LTKRGYTEVVEKRKNPSWAPTPSMRERNPEWPARIEGGDPDNPLGTRALYLSWQY-YRIH 120 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T + R ++GC+ + N Sbjct: 121 GTQDTRKIG---RRSSNGCIGLFN 141 >gi|150388024|ref|YP_001318073.1| carboxyl-terminal protease [Alkaliphilus metalliredigens QYMF] gi|149947886|gb|ABR46414.1| carboxyl-terminal protease [Alkaliphilus metalliredigens QYMF] Length = 467 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R +G+ V+ ++RL G A+ FQ GL P G++D Sbjct: 370 TRKPQIGDEGSDVEGAQQRLKAMGYTIKDPQ--GVMGESTYQAIYQFQEDAGLYPYGILD 427 Query: 159 SSTLEAMNV 167 ST A++ Sbjct: 428 FSTQGALDR 436 >gi|163751936|ref|ZP_02159148.1| general secretion pathway protein a [Shewanella benthica KT99] gi|161328152|gb|EDP99318.1| general secretion pathway protein a [Shewanella benthica KT99] Length = 542 Score = 44.3 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G +S +Q L L P FDA +E + FQ HGL Sbjct: 453 WQAPISQPREIGQGSNSEQIQWLENSLAQIDHRAPRLVDG--FDAKLEDKLMRFQREHGL 510 Query: 152 DPSGMVDSSTLEAMN 166 + S TL +N Sbjct: 511 RADAIAGSQTLVQLN 525 >gi|302390711|ref|YP_003826532.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] gi|302201339|gb|ADL08909.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] Length = 413 Score = 44.3 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + V+RL++ L G + F E AV++FQ P+G+ Sbjct: 14 KKKKPYIRGTDVRRLQQGLKWLGLYC--GRVDGVFGPETERAVRMFQHHFKDKPTGIAGE 71 Query: 160 STLE 163 + Sbjct: 72 KFFK 75 >gi|300694252|ref|YP_003750225.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum PSI07] gi|299076289|emb|CBJ35602.2| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum PSI07] Length = 404 Score = 44.3 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +++L++RL G + ++A++ +Q L G S L + Sbjct: 349 DIKQLQQRLADKGY--DPGTIDGLIGDRTQTAIRAYQKDQHLPQDGYASRSLLARLEK 404 >gi|120608777|ref|YP_968455.1| peptidoglycan-binding domain-containing protein [Acidovorax citrulli AAC00-1] gi|120587241|gb|ABM30681.1| Peptidoglycan-binding domain 1 protein [Acidovorax citrulli AAC00-1] Length = 346 Score = 44.3 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ + RL G + ++ FQ GL +G +D++T +A++ Sbjct: 292 VREAQARLNALGY--DVGAPDGGMGPKTANGLRAFQKDKGLPVTGRLDAATTDALSR 346 >gi|83943814|ref|ZP_00956272.1| peptidoglycan-binding protein, putative [Sulfitobacter sp. EE-36] gi|83845494|gb|EAP83373.1| peptidoglycan-binding protein, putative [Sulfitobacter sp. EE-36] Length = 375 Score = 43.9 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 D ++ GG + P G + + L+ERL G + G A+ Sbjct: 295 HLSDRIAGGGPIQASFGPDKYGLTIDDRKALQERLTARGF--DTDGTDGVIGPNSRKAIT 352 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 +Q GL +G L + Sbjct: 353 AYQQSQGLPATGDPSRELLARLG 375 >gi|269955325|ref|YP_003325114.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269304006|gb|ACZ29556.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 212 Score = 43.9 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 4/71 (5%) Query: 97 LPIRPLHLGNSSVSVQRLRERL----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + I + G++ V+ L+ L L F + A++ Q H +D Sbjct: 134 VTIGKVRKGDTGPDVRLLQGVLNVHGAGVAAGVGVLALDDDFGDKTDKALRAHQTAHKID 193 Query: 153 PSGMVDSSTLE 163 G+ + + Sbjct: 194 VDGVAGADSWR 204 >gi|323141957|ref|ZP_08076813.1| NlpC/P60 family protein [Phascolarctobacterium sp. YIT 12067] gi|322413571|gb|EFY04434.1| NlpC/P60 family protein [Phascolarctobacterium sp. YIT 12067] Length = 306 Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +++L + G + S SA+K FQ +H L G ++ +T + + Sbjct: 117 QQKLQVLGF--SDERPSGRMTEATSSALKSFQKQHKLKADGELNDATYQKLT 166 >gi|127511942|ref|YP_001093139.1| peptidoglycan binding domain-containing protein [Shewanella loihica PV-4] gi|126637237|gb|ABO22880.1| Peptidoglycan-binding domain 1 protein [Shewanella loihica PV-4] Length = 587 Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 94 WPELPIRPLHLGNSSV--SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G S +Q L L + L FDA +E ++ FQ +HGL Sbjct: 488 WQAPSYQPKEIGRGSAPAQIQWLENALAQIQ--NKPARLVDYFDAELEQSLMDFQRQHGL 545 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQ 177 + S TL +N+ + + +LQ Sbjct: 546 RADAIAGSQTLVQLNLYLSDKGPRLQ 571 >gi|163742343|ref|ZP_02149730.1| peptidoglycan-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161384293|gb|EDQ08675.1| peptidoglycan-binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 370 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + L++RL G + G E+A++ +Q GL +G + L + Sbjct: 314 KDDRI-LLQKRLTAKGF--DTGGADGVIGPNSETAIRAYQQSRGLPATGTPSPALLRELG 370 >gi|83645456|ref|YP_433891.1| hypothetical protein HCH_02678 [Hahella chejuensis KCTC 2396] gi|83633499|gb|ABC29466.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 160 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y+H TP+ + GC+R+RN Sbjct: 116 IYLHGTPDSEPMGEPQ---SHGCIRMRN 140 >gi|163739149|ref|ZP_02146561.1| peptidoglycan binding domain protein [Phaeobacter gallaeciensis BS107] gi|161387549|gb|EDQ11906.1| peptidoglycan binding domain protein [Phaeobacter gallaeciensis BS107] Length = 391 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + L++RL G + G E+A++ +Q GL +G + L + Sbjct: 335 KDDRI-LLQKRLTAKGF--DTGGADGVIGPNSETAIRAYQQSRGLPATGTPSPALLRELG 391 >gi|154687638|ref|YP_001422799.1| YvjB [Bacillus amyloliquefaciens FZB42] gi|154353489|gb|ABS75568.1| YvjB [Bacillus amyloliquefaciens FZB42] Length = 466 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +PL +S V+ + L G F ++ AV FQ R+ LD + ++D Sbjct: 375 KQPLQPDMNSADVKHAQILLKGLGFDPGRA--DGYFSKTMKKAVLAFQDRYKLDKTAVID 432 Query: 159 SSTLEAMNV 167 T E MN Sbjct: 433 KKTAEKMNQ 441 >gi|83955291|ref|ZP_00963946.1| peptidoglycan-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83840284|gb|EAP79458.1| peptidoglycan-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 372 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 D ++ GG + P G + + L+ERL G + G A+ Sbjct: 292 HLSDRIAGGGPIQASFGPDKYGLTIDDRKALQERLTARGF--DTDGTDGVIGPNSRKAIT 349 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 +Q GL +G L + Sbjct: 350 AYQQSQGLPATGDPSRELLARLG 372 >gi|186686453|ref|YP_001869649.1| hypothetical protein Npun_F6437 [Nostoc punctiforme PCC 73102] gi|186468905|gb|ACC84706.1| hypothetical protein Npun_F6437 [Nostoc punctiforme PCC 73102] Length = 521 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM----RHGLDPSGM--VDSS 160 S V+ ++ RL G S D + A+KLFQ R ++ G V Sbjct: 293 KSADVKAIKGRLYELGYKWVGDPDSADRDRGLFDAIKLFQSIIAGRSTVNGDGRVDVGGI 352 Query: 161 TLEAMNVPVDLRIRQLQVN 179 T + R + + Sbjct: 353 THRWLQAANAPRWELMPKS 371 >gi|146284084|ref|YP_001174237.1| membrane-bound lytic murein transglycosylase, putative [Pseudomonas stutzeri A1501] gi|145572289|gb|ABP81395.1| membrane-bound lytic murein transglycosylase, putative [Pseudomonas stutzeri A1501] Length = 446 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G WP +PL + S + L+ERL+ G A A++ FQ R G Sbjct: 375 AGSWPR-GEQPL---SRSERL-ELQERLVAQGF--DPGTPDGIIGANTRKAIRGFQQRLG 427 Query: 151 LDPSGMVDSSTLEAMNVPV 169 G L + Sbjct: 428 WPADGHPTQELLGRLRAQP 446 >gi|110634753|ref|YP_674961.1| peptidoglycan binding domain-containing protein [Mesorhizobium sp. BNC1] gi|110285737|gb|ABG63796.1| Peptidoglycan-binding domain 1 [Chelativorans sp. BNC1] Length = 1557 Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + +P + ++ L G P+ + + A+ FQ G + Sbjct: 60 PTVKKQPRAPAQDRAQIAEIQRLLNELGY--PAGPVDGQMGSKTRQAIANFQRETGQAVT 117 Query: 155 GMVDSSTLEAMN 166 G D L + Sbjct: 118 GQPDPVLLAVLR 129 >gi|295319659|gb|ADG00037.1| putative peptidoglycan-binding protein [Clostridium botulinum F str. 230613] Length = 46 Score = 43.9 bits (102), Expect = 0.048, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 15/37 (40%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G FD +K FQ L G+V T +A+ Sbjct: 5 GADDVFDNGTVVGIKYFQRDCNLSVDGIVGRETWKAL 41 >gi|291482585|dbj|BAI83660.1| hypothetical protein BSNT_00388 [Bacillus subtilis subsp. natto BEST195] Length = 732 Score = 43.9 bits (102), Expect = 0.048, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 101 PLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+S V ++ L +G + V SAVK FQ L +G D Sbjct: 211 TLTPGDSRTGFVLIVQYALYCNGKSFDPGEFDGKYGVGVVSAVKAFQEFMRLPQTGYADM 270 Query: 160 STLEAMNVPVDL 171 T++A+ Sbjct: 271 PTIKALLSSSGD 282 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA-------- 164 L+ L G G + F E+AVK FQ GL G+V + ++A Sbjct: 84 LQGALWCKGF--NPGGFTGVFYEKTENAVKEFQKAAGLTTQDGIVTTLIMKALLDMSAFK 141 Query: 165 MNVPVDLRIRQLQVNLMR 182 + D RIRQ+Q NL R Sbjct: 142 LVSGGDSRIRQIQQNLNR 159 >gi|327482401|gb|AEA85711.1| membrane-bound lytic murein transglycosylase, putative [Pseudomonas stutzeri DSM 4166] Length = 444 Score = 43.9 bits (102), Expect = 0.048, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 7/79 (8%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G WP +PL + S + L+ERL+ G A A++ FQ R G Sbjct: 373 AGSWPR-GEQPL---SRSERL-ELQERLVAQGF--DPGTPDGIIGANTRKAIRGFQQRLG 425 Query: 151 LDPSGMVDSSTLEAMNVPV 169 G L + Sbjct: 426 WPADGHPTQELLGRLRAQP 444 >gi|110678453|ref|YP_681460.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter denitrificans OCh 114] gi|109454569|gb|ABG30774.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter denitrificans OCh 114] Length = 196 Score = 43.9 bits (102), Expect = 0.049, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 31/168 (18%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPI---------------LHSRINRIMFNPYWVIPRS 249 + G V + V + D P ++ + YW +P Sbjct: 12 VSVFMGGTVAAHAAVPITLPDYNMPEKFLPREVRLRNDLDPFEIHVDPGQYALYWTLPDK 71 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-----VEEVDWNSPEPPNFIFRQDPGK 304 + + + R +L ++ KE E ++ + F G Sbjct: 72 RAIRYAVGIGR---THLYEHG-EFFVGAKKEWPSWTPTPEMIERDPQSYARFADGMPGGL 127 Query: 305 INAMASTKIEFYSRNN----TYMHDTPEPILFNNVVRFETSGCVRVRN 348 N + S + ++ + +H T +P R ++GC R+ N Sbjct: 128 NNPLGSRGLYLFTPSRGDTFLRIHGTNDPETIG---RRVSNGCARLIN 172 >gi|283768499|ref|ZP_06341411.1| C-terminal processing peptidase [Bulleidia extructa W1219] gi|283104891|gb|EFC06263.1| C-terminal processing peptidase [Bulleidia extructa W1219] Length = 506 Score = 43.9 bits (102), Expect = 0.049, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ + G F + AV FQ + GL+ +G ++ T A+ Sbjct: 431 QKAMTYLGY--RPGRTDGYFSEQTKKAVLAFQRKEGLEVTGTINQKTYGAL 479 >gi|163846364|ref|YP_001634408.1| peptidoglycan binding domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524129|ref|YP_002568600.1| peptidoglycan-binding domain 1 protein [Chloroflexus sp. Y-400-fl] gi|163667653|gb|ABY34019.1| Peptidoglycan-binding domain 1 protein [Chloroflexus aurantiacus J-10-fl] gi|222448008|gb|ACM52274.1| Peptidoglycan-binding domain 1 protein [Chloroflexus sp. Y-400-fl] Length = 484 Score = 43.9 bits (102), Expect = 0.049, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V ++ RL I G F AV F+ GL +D + + + Sbjct: 422 DPAVADIQARLAILGF--DPGPADGLFGPTTARAVHTFRAAAGLPEGETIDCAAWQEL 477 >gi|254559628|ref|YP_003066723.1| N-acetylmuramoyl-L-alanine amidase [Methylobacterium extorquens DM4] gi|254266906|emb|CAX22705.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Methylobacterium extorquens DM4] Length = 250 Score = 43.9 bits (102), Expect = 0.050, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 20/143 (13%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE--------- 96 + +AR+ I I +A ++ A A +D W Sbjct: 110 PYPEVQI-AAVARLARDIVVRRAIPGPRVLAHSDVAPARKEDPGEDFPWERLAREGVGHW 168 Query: 97 LPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +P P+ +G++ V+ L+ L + G + ++ FDA + + V FQ Sbjct: 169 VPPAPVRDGRFFAMGDTGQPVEALQAMLALYGY---EQPVTGHFDAAMRAVVTAFQRHFR 225 Query: 151 -LDPSGMVDSSTLEAMNVPVDLR 172 G+ DSST+ + + R Sbjct: 226 PARIDGVADSSTITTLRDLIASR 248 >gi|254560802|ref|YP_003067897.1| hypothetical protein METDI2352 [Methylobacterium extorquens DM4] gi|254268080|emb|CAX23954.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens DM4] Length = 230 Score = 43.9 bits (102), Expect = 0.051, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 6/60 (10%) Query: 292 EPPNFIFRQDPGKINAMASTKIEF---YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + G N + + +H T EP +SGC+R+ N Sbjct: 120 RNGPWRNGMAGGLGNPLGPRALYLFEGPRDTLYRIHGTTEPQTIGTD---VSSGCIRMFN 176 >gi|229821443|ref|YP_002882969.1| hypothetical protein Bcav_2962 [Beutenbergia cavernae DSM 12333] gi|229567356|gb|ACQ81207.1| hypothetical protein Bcav_2962 [Beutenbergia cavernae DSM 12333] Length = 547 Score = 43.9 bits (102), Expect = 0.051, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 R L +G S V +L+ L+ G +DP S FD SAV R G Sbjct: 167 RSLRVGTSGPDVLQLKAALVALG-IDPGNADSDVFDGATASAVDALYARAG 216 >gi|196230495|ref|ZP_03129357.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196225425|gb|EDY19933.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 200 Score = 43.9 bits (102), Expect = 0.051, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%) Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 Y+H TPE R + GC+R+R Sbjct: 128 YDRGIYIHGTPEEARIG---RPASYGCIRMR 155 >gi|322418720|ref|YP_004197943.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M18] gi|320125107|gb|ADW12667.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M18] Length = 188 Score = 43.9 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 55/183 (30%), Gaps = 51/183 (27%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVI---VGRVDRQT---PILHSRINRIMFNPYWV 245 Y+ ++I L E G G R+ V VG R P+ ++ + F+P+W Sbjct: 39 PHYYIEISISGKRLTLFEKGVHGERTEVAAYPVGTALRGLDTYPLGLGKVTAVQFDPWWY 98 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-K 304 RQ ++ I + + PG Sbjct: 99 P---------TPYARQV---FRERGIEL-----------------------PAKVPPGDP 123 Query: 305 INAMASTKIEFYSR---NNTY-MHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLK 358 +N M KI + Y +H +P R T GC + N DL + Sbjct: 124 LNYMGPFKISLSHKTRKGAIYRIHGNNDPKRVG---RRVTGGCFVMNNAEGIDLAHRIRV 180 Query: 359 DTP 361 T Sbjct: 181 GTE 183 >gi|303287032|ref|XP_003062805.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455441|gb|EEH52744.1| predicted protein [Micromonas pusilla CCMP1545] Length = 2265 Score = 43.9 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 8/79 (10%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 LP R + LG++ V L+E + +D V +Q +GL SG Sbjct: 84 LPTRDMGLGDAGTDVGMLQE--------AFGLPSTGVYDQRTSKKVARWQEANGLPRSGY 135 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 +++ E ++ RQ Sbjct: 136 FGAASRETFARSAQVQARQ 154 >gi|50401100|sp|Q90YC2|MMP21_CYNPY RecName: Full=Matrix metalloproteinase-21; Short=MMP-21; Flags: Precursor gi|14787103|dbj|BAB62075.1| matrix metalloproteinase-21 [Cynops pyrrhogaster] Length = 616 Score = 43.9 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 15/108 (13%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S + A+ + Q LS+ GW E P++ G SS + L DL Sbjct: 37 SPQHQAELVTDLQSAQQFLSKYGWTE-PVKW--EGTSSKNAAELPR--YGDADLMQEGAS 91 Query: 131 SVAFD----------AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + A++ FQ +GL +G +D ST+ AMN P Sbjct: 92 ISRYGQEFPLEPTQAPAFVEALRKFQTLNGLPATGKLDDSTIAAMNKP 139 >gi|218439324|ref|YP_002377653.1| peptidoglycan-binding protein [Cyanothece sp. PCC 7424] gi|218172052|gb|ACK70785.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7424] Length = 92 Score = 43.9 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V+ L+E L G ++ F Y E +V+ FQ + G+ +G+V+ T +A+N Sbjct: 24 GENVKHLQEFLSQLGHYKKD--INGYFCVYTEKSVRDFQFQIGIPVNGIVERRTWQAINR 81 >gi|332835329|ref|XP_003312866.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-21-like [Pan troglodytes] Length = 569 Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 46/143 (32%), Gaps = 29/143 (20%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L ++L + + + + F + P+ + IA A Sbjct: 2 LAASIFRPTLLLCWLAAPWPTQPENLFHSRDRSDLEP----SPLRQAKPIADLHAA---- 53 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q LSR GW + G + A + AV+ F Sbjct: 54 QRFLSRYGWSGVWA--------------------AWGPSPEGPPETPK-GAALAEAVRRF 92 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q + L SG +D++TL AMN P Sbjct: 93 QRANALPASGELDAATLAAMNRP 115 >gi|300697764|ref|YP_003748425.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum CFBP2957] gi|299074488|emb|CBJ54039.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum CFBP2957] Length = 390 Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +QRL+++L G + + A++ +Q H L G S L + Sbjct: 334 ADIQRLQQKLTDRGY--NPGTIDGIIGDRTQQAIRAYQKDHQLPQDGYASKSLLARLEQ 390 >gi|218288281|ref|ZP_03492580.1| hypothetical protein AaLAA1DRAFT_0165 [Alicyclobacillus acidocaldarius LAA1] gi|218241640|gb|EED08813.1| hypothetical protein AaLAA1DRAFT_0165 [Alicyclobacillus acidocaldarius LAA1] Length = 300 Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 49/168 (29%) Query: 104 LGNSSVSVQRLRERLIISGDLD-----------------------------------PSK 128 LG+ + L L G L + Sbjct: 62 LGDRGEPILVLHVVLAELGYLPCSYHVAVPTDRLYPQDWARAPIGYWTWNSGVPSELARR 121 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + + AV F+ HGL G + + + L + + ++ Sbjct: 122 WDPDRYTEITKGAVMRFEADHGLRVDGYTGPRVRRTLELALALHLT----ATQPYRLVMV 177 Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRI 235 + +IP L E+G+ V ++ G T I Sbjct: 178 DQ--------SIPQ-QLRVWEDGRGVIFQTVCSTGVPAAPTQPGAHAI 216 >gi|254420236|ref|ZP_05033960.1| N-acetylmuramoyl-L-alanine amidase domain protein [Brevundimonas sp. BAL3] gi|196186413|gb|EDX81389.1| N-acetylmuramoyl-L-alanine amidase domain protein [Brevundimonas sp. BAL3] Length = 253 Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMV 157 L G+ + LR L G G +DA E+ V+ FQ D G+ Sbjct: 172 GGLLQKGDQGIGAVVLRAGLHRLGYGLTPGGD---YDAETETTVRAFQRHWRPDRIDGVA 228 Query: 158 DSSTLEAM 165 D T + Sbjct: 229 DGETRARL 236 >gi|78212228|ref|YP_381007.1| hypothetical protein Syncc9605_0678 [Synechococcus sp. CC9605] gi|78196687|gb|ABB34452.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 179 Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFY-SRNNT-YMHDTPEPILFNNVVRFETSG 342 +V+ + R+ G + + + F+ + +H T P + G Sbjct: 95 KVNPIYVTHKSGQRRELRGPSSPIGDRYMAFHRNGRGEFGIHGTAWPHWVQIRA-AVSLG 153 Query: 343 CVRVRN--IIDLDVWL 356 CVR+ N I L + Sbjct: 154 CVRMLNSHIRQLFDAV 169 >gi|95108222|emb|CAD18391.2| putative membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum GMI1000] Length = 427 Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++RL++RL G + ++A++ +Q L G S L + Sbjct: 372 DIKRLQQRLADKGY--DPGTIDGLIGDRTQTAIRAYQKDQHLPQDGYASRSLLARLEK 427 >gi|328542952|ref|YP_004303061.1| N-acetylmuramoyl-L-alanine amidase domain protein [polymorphum gilvum SL003B-26A1] gi|326412698|gb|ADZ69761.1| N-acetylmuramoyl-L-alanine amidase domain protein [Polymorphum gilvum SL003B-26A1] Length = 253 Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSSTL 162 G + V+ L+ L + G +S FDA +AV FQ + G+ D ST+ Sbjct: 184 GEAGQPVEALQSMLALYGY---DVPISGVFDARTRAAVAAFQRHFRPERVDGIADVSTI 239 >gi|227825038|ref|ZP_03989870.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905537|gb|EEH91455.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 224 Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 23/200 (11%), Positives = 46/200 (23%), Gaps = 56/200 (28%) Query: 160 STLEAMNVPVDLRIRQLQVNLM--RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T + M + R + + +++V A L + V Sbjct: 50 ETQKQMPQKAPEPAISPEKAKEADRKESISLDASKSYHIIVEKKAHRLSLLLGDTVVRSY 109 Query: 218 TVIVGRV---------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 +G+ D TP+ ++ I W P D Sbjct: 110 GCAIGKGGLGQKQRRGDNMTPVGTFTVDEIDDASSW------------------PHDFGD 151 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 + G + ++ + +H T + Sbjct: 152 GRGEIAGAYG----PWFISLDTEALS--------------GGAW------DGIGIHGTHD 187 Query: 329 PILFNNVVRFETSGCVRVRN 348 P + GC+R+ N Sbjct: 188 PQSIGTD---ASEGCIRLHN 204 >gi|261408377|ref|YP_003244618.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. Y412MC10] gi|261284840|gb|ACX66811.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus sp. Y412MC10] Length = 468 Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 59/233 (25%), Gaps = 24/233 (10%) Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 + G V+++ L+ R +L +L + + Sbjct: 221 RLKRSAGQWADLQVETAVLQEAAKQYKARHGRLPKSLDELTQPYPNNWLSGRSKAMEQMF 280 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + + + T +P++ P +I L Sbjct: 281 ETLMQQQSQGAGGQGQAGQQPGNSTEEPGYWGTSPNGDPFFEQPLQVIIDRKRHRLAVVS 340 Query: 264 QYLKDNNIHMIDEKGKE------VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + N + K + + V+ N + + ++ + Sbjct: 341 GGILLRNYAVGLGGAKTPLGDFHINDKVVNPNGTTKGPY------------GTRGMQLSN 388 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHI 368 +H T + + GC+R+ ++ +L + T R + Sbjct: 389 T-LYAIHGTLDVDSIGANE---SEGCIRMLTEDVEELFDLVPMGTVVKIREGV 437 >gi|253580585|ref|ZP_04857849.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847956|gb|EES75922.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 301 Score = 43.9 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 L++ G + F + + +AVK FQ GL SG D +T Sbjct: 252 LLLHGYNPNGVEIPGIFGSGLLTAVKTFQKAQGLTVSGTCDRNTF 296 >gi|76825185|gb|AAI06861.1| Mmp21 protein [Mus musculus] Length = 415 Score = 43.9 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 45/168 (26%), Gaps = 44/168 (26%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA---IAFYQDILSRGGWP 95 + + F + P+ + IA A + Y GW Sbjct: 15 WLVAPQPTQPERLFHSRDRSDLEP----SPLSQAKPIADLHDAQSFLLKY-------GWS 63 Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+P S V G + AV+ FQ + L SG Sbjct: 64 EIPSPK-----ESAGVP--------VGF-------------TLAQAVRRFQKANRLPASG 97 Query: 156 MVDSSTLEAMNVP----VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +DS TL AMN P D R+ L + R Sbjct: 98 ELDSPTLAAMNKPRCGVPDTRLPPRAALPTPPALLTSLGLRPRARQKR 145 >gi|85707459|ref|ZP_01038539.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. 217] gi|85668047|gb|EAQ22928.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. 217] Length = 203 Score = 43.9 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 18/167 (10%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + V NI + + ++ LR+ I+ +D + S + Sbjct: 29 RGVAQTNEGLATPAVRSNISGFRVASWQDHFDNLRNGAILCDIDSRAVQFWSEDENVYKL 88 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 +P + + L I K P + Sbjct: 89 YPSSVPLT--------------EELTRRGYTEIVRKVDGPSWRPTPSMKERNPEWPDFVG 134 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + + + + +H T V ++GC+R+ N Sbjct: 135 PGPDNPLGTHALYLSWQY-YRVHGTVTR---ARSVDNPSNGCLRLYN 177 >gi|302541194|ref|ZP_07293536.1| N-acetylmuramoyl-L-alanine amidase [Streptomyces hygroscopicus ATCC 53653] gi|302458812|gb|EFL21905.1| N-acetylmuramoyl-L-alanine amidase [Streptomyces himastatinicus ATCC 53653] Length = 304 Score = 43.9 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 7/77 (9%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH----- 149 P P L + S L+ L +G + S S + ++AV F H Sbjct: 222 PAFPTG-LAPNKAKPSAVTLQRALKATGYMSKSVKESPNYGPATQAAVAKFHNAHPQYRA 280 Query: 150 -GLDPSGMVDSSTLEAM 165 G + A+ Sbjct: 281 KGTTHDVKIGPKGWGAL 297 >gi|240139809|ref|YP_002964286.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens AM1] gi|240009783|gb|ACS41009.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens AM1] Length = 413 Score = 43.9 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L+ RL G P G +A++ FQ GL P G D++ L+ + Sbjct: 356 LQTRLAALGH--PVGGADGKIGPKTRAAIRAFQEAKGLVPDGYADAALLDRVRAANAP 411 >gi|288941347|ref|YP_003443587.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] gi|288896719|gb|ADC62555.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] Length = 463 Score = 43.9 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 51/209 (24%), Gaps = 45/209 (21%) Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A + ++L L K + ++VN + STV G Sbjct: 65 AATETPPEQDKKLSGPLYEWKG---DGRKVTRIVVNTNEQKARFYSGDEEIGWSTVATGL 121 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 TP ++ + N + + KG V Sbjct: 122 PKYPTPTGRFQVTEKVENKRSNL------------------------YGKVYGKGGRVLR 157 Query: 284 EEVDWNSP---EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 V + F P + + +H P P + + Sbjct: 158 SSVKVGRDPIPDGGRFEGAHMP--------FFMRLT-DDGVGLHAGPIPN----PGQPAS 204 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 GC+R+ + L + + IE Sbjct: 205 HGCIRM--PTKIAPVLFRHVSNGTPVTIE 231 >gi|302527360|ref|ZP_07279702.1| predicted protein [Streptomyces sp. AA4] gi|302436255|gb|EFL08071.1| predicted protein [Streptomyces sp. AA4] Length = 246 Score = 43.9 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L G+ + +++ + R+ G G +D +AV Q +G++ Sbjct: 174 WPGL---VYAYGDCAPALRTFQLRMNAFGY--GFSGTGCYYD-KTRTAVLDLQRANGIND 227 Query: 154 SGMVDSSTLEAMNVPVDLR 172 SG + T +A R Sbjct: 228 SGRLGPKTWKAAWEGKAPR 246 >gi|157693918|ref|YP_001488380.1| peptidase [Bacillus pumilus SAFR-032] gi|157682676|gb|ABV63820.1| S41A subfamily peptidase [Bacillus pumilus SAFR-032] Length = 482 Score = 43.9 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL L ++ V++ + L G + FD + AV FQ + LD SG++D Sbjct: 390 KEPLQLDMNNEEVRQAQTLLK--GLSFDPGRVDGYFDEETKKAVLAFQSTYNLDKSGVID 447 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKK 185 T + MN VD ++ + N ++++ Sbjct: 448 LKTAKMMNKMVDE-VKSYEKNDLQLQT 473 >gi|84684354|ref|ZP_01012255.1| hypothetical protein 1099457000260_RB2654_12054 [Maritimibacter alkaliphilus HTCC2654] gi|84667333|gb|EAQ13802.1| hypothetical protein RB2654_12054 [Rhodobacterales bacterium HTCC2654] Length = 548 Score = 43.9 bits (102), Expect = 0.057, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 7/172 (4%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVD-MGIDSDIPIISKETIAQTEKAIAFYQDIL 89 + A ++ E +D F +D S A ++A A + I Sbjct: 218 LPAGDEGRVVIERTEQSPDDAFWVVARTMDDEEGYSLYLEYFPRG-AHNQEARAALRQIE 276 Query: 90 SRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + L+L ++ +++ L + G KG+ F +A++ +Q Sbjct: 277 DNRANRDETAEAALNLNQAARR--QVQRNLALLGH--DPKGIDGIFGPATRAAIRSYQSA 332 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 + +G + L M D R QL+ + E++ + + Sbjct: 333 NDFTVTGYLSRDMLARMTAQADDRAEQLEREAAERQARQEREDRRYWEQIGQ 384 Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 36/142 (25%), Gaps = 12/142 (8%) Query: 29 KPIHASVLDEIINESYHSIVNDRFD----NFLARVDMGIDSDIPIISKETIAQTEKAIAF 84 + LD+I D + + A ++A A Sbjct: 404 SEVAQDRLDDIEAAKRSEAQAQERDFWDRVRNEDKPGSYRAYLDRYPNGLFA--QEARAR 461 Query: 85 YQDILSRGGWPELPIRPLHLGNS--SVSVQRL--RERLIISGDLDPSKGLSVAFDAYVES 140 + + V RL RL+ G + F Sbjct: 462 LDQLSQNQQNEAQMAAAEREEQTVAGNQVTRLLVENRLVSLGF--DIPEVDGVFGPTARR 519 Query: 141 AVKLFQMRHGLDPSGMVDSSTL 162 A++ FQ GL +G V T+ Sbjct: 520 AIRRFQSSRGLPVTGFVTQETM 541 >gi|110635074|ref|YP_675282.1| lytic murein transglycosylase [Mesorhizobium sp. BNC1] gi|110286058|gb|ABG64117.1| lytic murein transglycosylase [Chelativorans sp. BNC1] Length = 407 Score = 43.9 bits (102), Expect = 0.057, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L++RL G + A++ FQ R GL G L + Sbjct: 354 ELQKRLGTLGYY--EGEIDGKVGQASREAIRAFQSRMGLAQDGHPSKEVLNVLR 405 >gi|171702397|dbj|BAG16271.1| matrix metalloproteinase 9 [Rhabdophis tigrinus tigrinus] Length = 677 Score = 43.9 bits (102), Expect = 0.057, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Query: 98 PIRPLHLGNSSVSVQRLRER------LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P P+ + ++ L +R L G L S +E+ +K Q + GL Sbjct: 28 PKGPVVVNFPGDALSLLTDRELAARYLQRYGYLTASNPGGQV---KLETPLKAMQKQLGL 84 Query: 152 DPSGMVDSSTLEAMNVP 168 +G +D+STL AM P Sbjct: 85 PETGELDASTLAAMRAP 101 >gi|296330269|ref|ZP_06872750.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676126|ref|YP_003867798.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. spizizenii str. W23] gi|296152537|gb|EFG93405.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414370|gb|ADM39489.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. spizizenii str. W23] Length = 480 Score = 43.9 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL + ++ V+ + L G F ++ AV FQ ++ LD +G++D Sbjct: 389 KEPLKVDMNNEDVKHAQVLLK--GLSFDPGRDDGYFSKDMKKAVMAFQDQNKLDKTGVID 446 Query: 159 SSTLEAMNVPVDLR 172 + T EA+N V+ + Sbjct: 447 TRTAEALNQLVEKK 460 >gi|256389541|ref|YP_003111105.1| peptidoglycan-binding protein [Catenulispora acidiphila DSM 44928] gi|256355767|gb|ACU69264.1| Peptidoglycan-binding domain 1 protein [Catenulispora acidiphila DSM 44928] Length = 360 Score = 43.9 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 9/79 (11%) Query: 95 PELPIRPLHLGNSS------VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 P LP PL G+ V+RL++ L ++ L+ + + FD AV +Q Sbjct: 280 PNLPGGPLG-GDKHHRGNNPADVKRLQQALAVA--LNTNLKATGQFDLDTFGAVVQYQGA 336 Query: 149 HGLDPSGMVDSSTLEAMNV 167 + P G+V+ + A+ Sbjct: 337 MHMTPDGLVNGTVWAALQQ 355 >gi|163761080|ref|ZP_02168157.1| putative amidase (ampd protein) [Hoeflea phototrophica DFL-43] gi|162281631|gb|EDQ31925.1| putative amidase (ampd protein) [Hoeflea phototrophica DFL-43] Length = 259 Score = 43.9 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 10/83 (12%) Query: 85 YQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Y++ + G W P R G+S V+ L+ L + G + + A + Sbjct: 168 YREGI--GHWVEPLPVGGGRFFQEGDSGQPVEALQTMLALYGY---GLEVDGVYSAQTAA 222 Query: 141 AVKLFQMRHG-LDPSGMVDSSTL 162 V+ FQ G+ D+ST+ Sbjct: 223 VVRAFQRHFRPARVDGIADASTI 245 >gi|89071137|ref|ZP_01158335.1| hypothetical protein OG2516_13961 [Oceanicola granulosus HTCC2516] gi|89043322|gb|EAR49545.1| hypothetical protein OG2516_13961 [Oceanicola granulosus HTCC2516] Length = 255 Score = 43.9 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 9/91 (9%) Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY--MHDTPEPILFNNVVRF 338 ++ + + G N + + + R +TY +H T +P Sbjct: 105 PGMIEREPEKYQQYADGMPGGPGNPLGARALYLFQPERGDTYLRIHGTDKPETIKQD--- 161 Query: 339 ETSGCVRV--RNIIDLDVWLLKDTPTWSRYH 367 ++GC R+ R II+L + DT + Sbjct: 162 VSNGCARLVDRQIIELYDRVPLDTKVYLYEK 192 >gi|328884149|emb|CCA57388.1| hypothetical protein SVEN_4102 [Streptomyces venezuelae ATCC 10712] Length = 122 Score = 43.9 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%) Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G F + A++ FQ GL P G+V +T Sbjct: 60 WKTGY--HPIAEDRIFGPDTDGAIRAFQQWKGLRPDGIVGPAT 100 >gi|13475412|ref|NP_106976.1| hypothetical protein mll6473 [Mesorhizobium loti MAFF303099] gi|14026164|dbj|BAB52762.1| mll6473 [Mesorhizobium loti MAFF303099] Length = 196 Score = 43.5 bits (101), Expect = 0.059, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 P G N + + + R+ Y +H T +P TSGC R+ Sbjct: 119 RARQPELPELVPSGPYNPLGARALYLLRDGRDTLYRIHGTNDPSGVGFDG---TSGCFRL 175 Query: 347 RN--IIDLDVWLLKDTP 361 N +IDL + T Sbjct: 176 TNTDVIDLFKRVPVGTK 192 >gi|288962623|ref|YP_003452917.1| plasma membrane H+-transporting two-sector ATPase [Azospirillum sp. B510] gi|288914889|dbj|BAI76373.1| plasma membrane H+-transporting two-sector ATPase [Azospirillum sp. B510] Length = 1139 Score = 43.5 bits (101), Expect = 0.059, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S V++ +E L G S + AV+ FQ GL P+G +D+ TL + + Sbjct: 57 SAEVRQAQEALRGKGFDVGSSDGQP--GERTQRAVRAFQRGQGLTPTGTLDAETLRRLGI 114 Query: 168 PVDLRIRQLQ 177 Q Sbjct: 115 GDSAPASQPA 124 >gi|158423847|ref|YP_001525139.1| lytic murein transglycosylase [Azorhizobium caulinodans ORS 571] gi|158330736|dbj|BAF88221.1| lytic murein transglycosylase [Azorhizobium caulinodans ORS 571] Length = 421 Score = 43.5 bits (101), Expect = 0.059, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 3/59 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMN 166 +Q +++RL G + G AVK FQ R GL G L A+ Sbjct: 362 AELQEIQQRLTRLGF--DTGGTDGRVGNDTMRAVKAFQQRAGLTPADGYPGLQVLTALR 418 >gi|163852472|ref|YP_001640515.1| lytic murein transglycosylase [Methylobacterium extorquens PA1] gi|163664077|gb|ABY31444.1| lytic murein transglycosylase [Methylobacterium extorquens PA1] Length = 413 Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ RL G P G +A++ FQ GL P G D++ L+ + Sbjct: 356 LQTRLAALGH--PVGGADGKIGPKTRAAIRAFQEAKGLVPDGYADAALLDRVRA 407 >gi|91977869|ref|YP_570528.1| N-acetylmuramoyl-L-alanine amidase [Rhodopseudomonas palustris BisB5] gi|91684325|gb|ABE40627.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodopseudomonas palustris BisB5] Length = 288 Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 10/85 (11%) Query: 86 QDILSRG--GW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + + + G W P LG ++ +++ L G + +D Sbjct: 187 RSLAASGVGHWVEPAPIEAGAGFRLGAEGEQIRVMQQALADYGY---GISATGKYDPATV 243 Query: 140 SAVKLFQMRHG-LDPSGMVDSSTLE 163 V FQ G+ D STL Sbjct: 244 EVVSAFQRHFRPEKVDGVADGSTLA 268 >gi|86743131|ref|YP_483531.1| peptidoglycan binding domain-containing protein [Frankia sp. CcI3] gi|86569993|gb|ABD13802.1| Peptidoglycan-binding domain 1 [Frankia sp. CcI3] Length = 266 Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 13/78 (16%) Query: 101 PLHLGNSSVSVQRLRERLII-------SGDLDPSKGLSVAFDAYVESAVKLFQM----RH 149 L G+ V L+ L I +GD + + V Q Sbjct: 180 TLREGSRGPDVVELQNALNIIFGHEAPTGD-PNRITPDGVYGPRTTARVASLQRYAAPWF 238 Query: 150 G-LDPSGMVDSSTLEAMN 166 G + G+ +T + Sbjct: 239 GRIPDDGVCGPNTWRKIG 256 >gi|146278312|ref|YP_001168471.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] gi|145556553|gb|ABP71166.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] Length = 182 Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 44/151 (29%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L E+G V R V + + +RI R + P W ++ ++D Sbjct: 63 LFWSEDGTVHRRFPAAVPAARDLSRVGLTRIIRKVEGPTWRPTPAMRERD---------- 112 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 P PG N + + + +H Sbjct: 113 -----------------------------PGLPASLPPGPGNPFGTHALCLEWDH-FRIH 142 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +P L GC+ + N D+ Sbjct: 143 GISDPALLGGE---VAHGCIGLHNA-DIAEL 169 >gi|163794075|ref|ZP_02188048.1| hypothetical protein BAL199_01639 [alpha proteobacterium BAL199] gi|159180689|gb|EDP65208.1| hypothetical protein BAL199_01639 [alpha proteobacterium BAL199] Length = 493 Score = 43.5 bits (101), Expect = 0.062, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ ++ L G +A++ +Q GL G+ D++ L +++ P Sbjct: 207 IRLIQATLTERGY--QPGPSDGVMGQATINAIRTYQTDAGLPVDGVADAALLASLDKP 262 >gi|149376588|ref|ZP_01894348.1| ErfK/YbiS/YcfS/YnhG [Marinobacter algicola DG893] gi|149359106|gb|EDM47570.1| ErfK/YbiS/YcfS/YnhG [Marinobacter algicola DG893] Length = 145 Score = 43.5 bits (101), Expect = 0.062, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y+H TP+ + GC+R+RN Sbjct: 102 IYIHGTPDTEPMGVPR---SHGCIRMRN 126 >gi|109392314|ref|YP_655544.1| gp27 [Mycobacterium phage Halo] gi|189043114|ref|YP_001936055.1| hypothetical protein BPs1_27 [Mycobacterium phage BPs] gi|239590038|ref|YP_002941885.1| gp27 [Mycobacterium phage Angel] gi|91980564|gb|ABE67284.1| hypothetical protein Halo27 [Mycobacterium phage Halo] gi|171909229|gb|ACB58186.1| hypothetical protein BPs1_27 [Mycobacterium phage BPs] gi|238890570|gb|ACR77559.1| gp27 [Mycobacterium phage Angel] gi|255927871|gb|ACU41491.1| gp27 [Mycobacterium phage Hope] Length = 438 Score = 43.5 bits (101), Expect = 0.062, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSST 161 G V+ L+ RL + + F + E+ V+ +Q H L G+V +T Sbjct: 374 RPGQDPRQVRVLQTRLKRA---YSKLDVDGIFGPHTEACVRDYQHLHPPLVADGIVGPAT 430 Query: 162 LEAMN 166 A+ Sbjct: 431 AAALG 435 >gi|269128526|ref|YP_003301896.1| peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] gi|268313484|gb|ACY99858.1| Peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] Length = 440 Score = 43.5 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L G+ V++L L G L +D E AV+ + +HG +P+G Sbjct: 134 RTLGPGDKGEDVEQLERALARLGF--DPGRLDGRYDGATERAVEKWYGKHGYEPAG 187 >gi|295688551|ref|YP_003592244.1| N-acetylmuramyl-L-alanine amidase [Caulobacter segnis ATCC 21756] gi|295430454|gb|ADG09626.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Caulobacter segnis ATCC 21756] Length = 242 Score = 43.5 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 9/81 (11%) Query: 90 SRGGW---PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 G W P P PL G V L+ L G + +D + + V FQ Sbjct: 157 GHGLWIEPPPSPGAPLGQGEEGTGVFALQAGLTRLGF---DCAPTGKYDEWTTTVVAAFQ 213 Query: 147 MRHGLDP--SGMVDSSTLEAM 165 RH L G+ D T + Sbjct: 214 -RHWLQSRFDGIADGETRARL 233 >gi|255648146|gb|ACU24527.1| unknown [Glycine max] Length = 388 Score = 43.5 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 17/107 (15%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L G ++ S+ + +FD SA+K +Q L +G+ + ++ M LR Sbjct: 97 LSEYGYIESSRPFNNSFDQETMSAIKTYQKFSNLPVTGVPNKQLIQQML---SLRCGVPD 153 Query: 178 VNLMR-------------IKKLLEQKMGLRYV-LVNIPAASLEAVEN 210 VN + + + ++ IP + + Sbjct: 154 VNFDYNFTDDNTSYPKAGHRWFPNRNLTYGFLPENQIPDNMTKVFRD 200 >gi|254562224|ref|YP_003069319.1| membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens DM4] gi|254269502|emb|CAX25468.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens DM4] Length = 413 Score = 43.5 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ RL G P G +A++ FQ GL P G D++ L+ + Sbjct: 356 LQTRLAALGH--PVGGADGKIGPKTRAAIRAFQEAKGLVPDGYADAALLDRVRA 407 >gi|311694519|gb|ADP97392.1| peptidoglycan-binding domain 1 protein-like protein [marine bacterium HP15] Length = 373 Score = 43.5 bits (101), Expect = 0.064, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 25/45 (55%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 D + +A++ +Q ++GL +G +D++TL+A+ V + Sbjct: 60 DEQLRAAIRAYQAQNGLQTNGNLDTATLKALGVTKTSSATITANS 104 >gi|227534613|ref|ZP_03964662.1| peptidoglycan-binding protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187753|gb|EEI67820.1| peptidoglycan-binding protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 716 Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 46/166 (27%), Gaps = 28/166 (16%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE---TIAQTEKAIAFYQDILSRG- 92 DE + + V + P + TI + I + G Sbjct: 3 DEAVRAVQK-----WLNKTYGSVPGFV--AAPENGQTGWPTIYSLRMGLQHEIGISAIGE 55 Query: 93 GWPELPI-------RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G+ E L G Q ++ G + F +AVK Sbjct: 56 GFGETTKNALAPVVGSLKPGYKGNIAQLIQGAFWCKG--ISPVDFNNEFTNNTLNAVKEL 113 Query: 146 QMRHGLDPSGMVDSSTLEA--------MNVPVDLRIRQLQVNLMRI 183 Q G+ G V + + A + D ++R +Q L R Sbjct: 114 QQDAGIAADGSVTVAFMAALFDMAAFVLVSNGDAKVRTMQQALNRK 159 >gi|291520973|emb|CBK79266.1| Cell wall-associated hydrolases (invasion-associated proteins) [Coprococcus catus GD/7] Length = 331 Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 23/53 (43%) Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 G + + + + V FQ +HGLD +G VD +T AM + + Sbjct: 122 QTLGLGNAVGMNGALYTSEIADTVADFQAQHGLDATGTVDLTTWLAMGLSEED 174 >gi|226526936|ref|YP_002790956.1| hypothetical protein pLB925A03_p3 [Lactobacillus brevis] gi|226442528|dbj|BAH56399.1| hypothetical protein [Lactobacillus brevis] Length = 716 Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 28/166 (16%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE---TIAQTEKAIAFYQDILSRG- 92 DE + + V + P + TI + I + G Sbjct: 3 DEAVRAVQK-----WLNKTYGSVPGFV--AAPENGQTGWPTIYSLRMGLQHEIGISAIGE 55 Query: 93 GWPELPI-------RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G+ + L G Q ++ G + F +AVK Sbjct: 56 GFGDTTKNALAPVVGNLKPGYKGNIAQLIQGAFWCKG--ISPVDFNNEFTNNTLNAVKEL 113 Query: 146 QMRHGLDPSGMVDSSTLEA--------MNVPVDLRIRQLQVNLMRI 183 Q G+ G V + + A + D ++R +Q L R Sbjct: 114 QQDAGIAADGSVTVAFMAALFDMAAFVLVSSGDAKVRTMQQALNRK 159 >gi|92114190|ref|YP_574118.1| ErfK/YbiS/YcfS/YnhG [Chromohalobacter salexigens DSM 3043] gi|91797280|gb|ABE59419.1| ErfK/YbiS/YcfS/YnhG [Chromohalobacter salexigens DSM 3043] Length = 173 Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK--DTPTW 363 R Y+H TP+ + GC+R+R+ L V+ TP W Sbjct: 124 SQRRYIYLHGTPDDQPMGVP---ASHGCIRLRDAALLSVFAAAPPGTPVW 170 >gi|312113681|ref|YP_004011277.1| lytic murein transglycosylase [Rhodomicrobium vannielii ATCC 17100] gi|311218810|gb|ADP70178.1| lytic murein transglycosylase [Rhodomicrobium vannielii ATCC 17100] Length = 415 Score = 43.5 bits (101), Expect = 0.066, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 13/111 (11%) Query: 61 MGIDSDIPIISKETIAQTEKAIAFY-QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERL 118 I S P T A AIA + G + + P + VQ L++RL Sbjct: 313 DAIKSYNPA---NTYAL---AIAHLGDRLKGEGPFVQQFPGGERAP--TLAEVQELQKRL 364 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNVP 168 +G + G A++ FQ++ G+ G L + Sbjct: 365 TAAGF--DTDGTDGRVGKDTMKAIRDFQLKVGMQPADGYAGLKVLARLRAS 413 >gi|23308683|ref|NP_694423.1| matrix metalloproteinase-21 precursor [Mus musculus] gi|50401063|sp|Q8K3F2|MMP21_MOUSE RecName: Full=Matrix metalloproteinase-21; Short=MMP-21; Flags: Precursor gi|22252944|gb|AAM94032.1| matrix metalloproteinase-21 [Mus musculus] gi|22854900|gb|AAN09805.1| matrix metalloproteinase 21 [Mus musculus] gi|76827853|gb|AAI06862.1| Matrix metallopeptidase 21 [Mus musculus] gi|148685821|gb|EDL17768.1| matrix metallopeptidase 21 [Mus musculus] Length = 568 Score = 43.5 bits (101), Expect = 0.066, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 45/168 (26%), Gaps = 44/168 (26%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA---IAFYQDILSRGGWP 95 + + F + P+ + IA A + Y GW Sbjct: 15 WLVAPQPTQPERLFHSRDRSDLEP----SPLSQAKPIADLHDAQSFLLKY-------GWS 63 Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+P S V G + AV+ FQ + L SG Sbjct: 64 EIPSPK-----ESAGVP--------VGF-------------TLAQAVRRFQKANRLPASG 97 Query: 156 MVDSSTLEAMNVP----VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +DS TL AMN P D R+ L + R Sbjct: 98 ELDSPTLAAMNKPRCGVPDTRLPPRAALPTPPALLTSLGLRPRARQKR 145 >gi|332710465|ref|ZP_08430412.1| opcA protein [Lyngbya majuscula 3L] gi|332350796|gb|EGJ30389.1| opcA protein [Lyngbya majuscula 3L] Length = 451 Score = 43.5 bits (101), Expect = 0.066, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 ++ L G + + +A+K Q +GL +G D +T + + ++ Sbjct: 59 QQLLAALGYYS--GPIDGILGPRMVAALKAAQKAYGLARTGKADEATKAKLREEYNESLQ 116 Query: 175 --QLQVNLM 181 Q Q NL Sbjct: 117 KGQRQKNLQ 125 >gi|239832320|ref|ZP_04680649.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum intermedium LMG 3301] gi|239824587|gb|EEQ96155.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum intermedium LMG 3301] Length = 268 Score = 43.5 bits (101), Expect = 0.066, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 E IA Y + P R L G + V+ L+ L + G ++ FD Sbjct: 177 EAGIAHYIE-----PTPIRGGRFLARGENGQPVEALQSMLALYGY---GIAITGIFDEDT 228 Query: 139 ESAVKLFQMRHG-LDPSGMVDSSTLE 163 E+ +K FQ + G+ D ST++ Sbjct: 229 ETVIKAFQRHFRPQNVDGVADVSTID 254 >gi|304319699|ref|YP_003853342.1| plasma membrane H+-transporting two-sector ATPase, C subunit [Parvularcula bermudensis HTCC2503] gi|303298602|gb|ADM08201.1| plasma membrane H+-transporting two-sector ATPase, C subunit [Parvularcula bermudensis HTCC2503] Length = 924 Score = 43.5 bits (101), Expect = 0.067, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 2/76 (2%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ +E+L+ G SA++ FQ L SG +D T+ + Sbjct: 7 AQDPAIRSAQEQLLERGY--EPGPADGFSGPRTVSAIEAFQRDQDLVVSGELDDQTVARL 64 Query: 166 NVPVDLRIRQLQVNLM 181 + P ++ Sbjct: 65 SAPSVAPAPLPDIDYE 80 >gi|83745679|ref|ZP_00942737.1| Membrane-bound lytic murein transglycosylase B [Ralstonia solanacearum UW551] gi|83727756|gb|EAP74876.1| Membrane-bound lytic murein transglycosylase B [Ralstonia solanacearum UW551] Length = 427 Score = 43.5 bits (101), Expect = 0.067, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +QRL+++L G + + A++ +Q H L G S L + Sbjct: 371 ADIQRLQQKLTDRGY--DPGTIDGIIGDRTQQAIRAYQKDHQLPQDGYASRSLLARLEQ 427 >gi|328871173|gb|EGG19544.1| hypothetical protein DFA_00122 [Dictyostelium fasciculatum] Length = 971 Score = 43.5 bits (101), Expect = 0.067, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 12/98 (12%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ----MRHGL----DPSGMVDSSTL 162 V+ L+ L L + +D +AVK FQ ++G+ + G +D T Sbjct: 382 VKELQAALSHLNYLPLLTRIDGQYDQKTINAVKAFQIDNNRKNGISNSKEVEGYIDQFTF 441 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 + + I L+ L + Y+ N Sbjct: 442 K----GIAEDINNLKRKLESLGYKPPNHPIKDYMSFNE 475 >gi|196234069|ref|ZP_03132903.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196221818|gb|EDY16354.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 198 Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 39/168 (23%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + +++ +++GKV S + GR TP ++ Sbjct: 19 APLAIDIDLGLQKAFLLQDGKVVYESPICSGRPGHLTPTGDFQV---------------- 62 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 L +D +L ++D GK + + D + P F Q P Sbjct: 63 -------LEKDENHLSSLYGRIVDTNGKTLVRDA-DADMSVPKGAKFVQAP--------M 106 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII-DLDVWLLK 358 K T +H P + GCVR+ + +L + + Sbjct: 107 KHFLRFDGATGLHSGYLPGY------PASHGCVRMPEVKAELFYSIAE 148 >gi|310828762|ref|YP_003961119.1| Peptidoglycan-binding lysin domain protein [Eubacterium limosum KIST612] gi|308740496|gb|ADO38156.1| Peptidoglycan-binding lysin domain protein [Eubacterium limosum KIST612] Length = 330 Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 110 SVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V R++E L G D+ G +A+K FQ ++GL+ G+ T A+ + Sbjct: 276 EVARIQEALKRHGHDIPVDGGAGPI----TFAALKDFQAKNGLEADGICGDLTRAALGI 330 >gi|297205125|ref|ZP_06922521.1| periplasmic protease [Lactobacillus jensenii JV-V16] gi|297149703|gb|EFH30000.1| periplasmic protease [Lactobacillus jensenii JV-V16] Length = 638 Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 9/80 (11%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQ--RLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y + P + +LG + V+ + RL G ++ +AV Sbjct: 399 YYQVQYNQIQPSIYAPGYNLGYNYEGVKTWLVMRRL---GTYAGYAN----YNWATVNAV 451 Query: 143 KLFQMRHGLDPSGMVDSSTL 162 K FQ HGL+P+G+VD +T Sbjct: 452 KNFQASHGLNPTGIVDLATW 471 >gi|310816330|ref|YP_003964294.1| peptidoglycan-binding domain 1 protein [Ketogulonicigenium vulgare Y25] gi|308755065|gb|ADO42994.1| peptidoglycan-binding domain 1 protein [Ketogulonicigenium vulgare Y25] Length = 272 Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 14/101 (13%) Query: 84 FYQDILSRGGW--------PELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSV 132 Q I ++GG P + LG + + ++ RL G ++G Sbjct: 174 QVQQIAAQGGNVTPTPTPNPNVATDQQEEQLLGLTLAERREIQTRLTALGY--NTRGADG 231 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLR 172 F +A+ FQ + +G + + L A+ +R Sbjct: 232 VFGQNTRNAIAGFQRDNSASITGYITADQLRALRSQTPSVR 272 >gi|294506301|ref|YP_003570359.1| conserved hypothetical protein containing ErfK/YbiS/YcfS/YnhG [Salinibacter ruber M8] gi|294342629|emb|CBH23407.1| conserved hypothetical protein containing ErfK/YbiS/YcfS/YnhG [Salinibacter ruber M8] Length = 325 Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 9/112 (8%) Query: 266 LKDNNIHMIDEKGKEVFVE-EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 L I ++N E PG+ M F++ ++H Sbjct: 157 LARWGIVNTGNPDSTATPTGRFNFNWKEKKRVSTMSPPGEEWTM-RWVFNFHAARGIHIH 215 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 P + GCVR+ + W+ W + + Sbjct: 216 QYSMP-----TGGPTSHGCVRLVDAD--AEWIYDWAEPWQTTKGHMGPSSGR 260 >gi|282931884|ref|ZP_06337363.1| NlpC/P60 family protein [Lactobacillus jensenii 208-1] gi|281303995|gb|EFA96118.1| NlpC/P60 family protein [Lactobacillus jensenii 208-1] Length = 736 Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 9/80 (11%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQ--RLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y + P + +LG + V+ + RL G ++ +AV Sbjct: 497 YYQVQYNQIQPSIYAPGYNLGYNYEGVKTWLVMRRL---GTYAGYAN----YNWATVNAV 549 Query: 143 KLFQMRHGLDPSGMVDSSTL 162 K FQ HGL+P+G+VD +T Sbjct: 550 KNFQASHGLNPTGIVDLATW 569 >gi|83956108|ref|ZP_00964590.1| hypothetical protein NAS141_02906 [Sulfitobacter sp. NAS-14.1] gi|83839674|gb|EAP78853.1| hypothetical protein NAS141_02906 [Sulfitobacter sp. NAS-14.1] Length = 193 Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 14/126 (11%) Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHM-IDEKGKEVFVEEVDWNSPEPPNFIFR--Q 300 W P + + + + R P + ++ ++ R Sbjct: 63 WTQPNNTAIRYTVGIGR--PGLYEAGEFYVGAKKEWPSWTPTPGMLRREPQKYGPLRNGM 120 Query: 301 DPGKINAMASTKIEF--YSRNNTYM--HDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 G N + + + R +T++ H T +P R ++GC R+ N II L Sbjct: 121 PGGLSNPLGARALYLFQPGRGDTFLRVHGTNDPTTIG---RAVSNGCARLVNNQIIQLFN 177 Query: 355 WLLKDT 360 + DT Sbjct: 178 QVPLDT 183 >gi|83814190|ref|YP_444553.1| ErfK/YbiS/YcfS/YnhG family protein [Salinibacter ruber DSM 13855] gi|83755584|gb|ABC43697.1| ErfK/YbiS/YcfS/YnhG family [Salinibacter ruber DSM 13855] Length = 325 Score = 43.5 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 9/112 (8%) Query: 266 LKDNNIHMIDEKGKEVFVE-EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 L I ++N E PG+ M F++ ++H Sbjct: 157 LARWGIVNTGNPDSTATPTGRFNFNWKEKKRVSTMSPPGEEWTM-RWVFNFHAARGIHIH 215 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 P + GCVR+ + W+ W + + Sbjct: 216 QYSMP-----TGGPTSHGCVRLVDAD--AEWIYDWAEPWQTTKGHMGPSSGR 260 >gi|17549461|ref|NP_522801.1| putative transglycosylase protein [Ralstonia solanacearum GMI1000] Length = 390 Score = 43.5 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++RL++RL G + ++A++ +Q L G S L + Sbjct: 335 DIKRLQQRLADKGY--DPGTIDGLIGDRTQTAIRAYQKDQHLPQDGYASRSLLARLEK 390 >gi|291441824|ref|ZP_06581214.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291344719|gb|EFE71675.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 256 Score = 43.5 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 108 SVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 SV + R+ + G S + + +SA + FQ GL G+V +T A Sbjct: 199 HASVATWQYRMNSAHGY---SLAVDGRYGPGSDSACRSFQSSKGLSVDGIVGPATWGA 253 >gi|239933456|ref|ZP_04690409.1| N-acetylmuramoyl-L-alanine amidase [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 43.5 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 108 SVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 SV + R+ + G S + + +SA + FQ GL G+V +T A Sbjct: 189 HASVATWQYRMNSAHGY---SLAVDGRYGPGSDSACRSFQSSKGLSVDGIVGPATWGA 243 >gi|319408149|emb|CBI81802.1| peptidoglycan-binding protein [Bartonella schoenbuchensis R1] Length = 418 Score = 43.5 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L+ RL GD + + A+K FQ+RHGL+ +G Sbjct: 365 ELQSRLAALGDYKGE--IDGKIGTASKQAIKSFQLRHGLEANG 405 >gi|197105879|ref|YP_002131256.1| hypothetical protein PHZ_c2418 [Phenylobacterium zucineum HLK1] gi|196479299|gb|ACG78827.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 213 Score = 43.5 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query: 92 GGWPELPIRPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G P LG + VQR++ LII G + + + A++ FQ Sbjct: 136 GADPSTAAPAERLGQDEITSFVQRVQIALIIKGY--DPGPANGVLSSKTKEALRAFQAAT 193 Query: 150 GLDPSGMVDSSTLEAMNV 167 GL +G +D TL A+ V Sbjct: 194 GLTATGAMDMDTLNALGV 211 >gi|153004608|ref|YP_001378933.1| peptidoglycan binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028181|gb|ABS25949.1| Peptidoglycan-binding domain 1 protein [Anaeromyxobacter sp. Fw109-5] Length = 146 Score = 43.5 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 95 PELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P +P P L G +V+ L+ L G L + D A++ FQ L Sbjct: 62 PRIPASPEALLAPG----AVKDLQRALTDRGLL--GTHRAGELDDATSRAIRRFQESEQL 115 Query: 152 DPSGMVDSSTLEAMNVPVD 170 +G D TL+ + + D Sbjct: 116 AATGFPDRETLQRLGLDPD 134 >gi|16126805|ref|NP_421369.1| N-acetylmuramoyl-L-alanine amidase [Caulobacter crescentus CB15] gi|221235586|ref|YP_002518023.1| anhydro-N-acetylmuramyl-tripeptide amidase [Caulobacter crescentus NA1000] gi|13424135|gb|AAK24537.1| N-acetylmuramoyl-L-alanine amidase [Caulobacter crescentus CB15] gi|220964759|gb|ACL96115.1| anhydro-N-acetylmuramyl-tripeptide amidase [Caulobacter crescentus NA1000] Length = 242 Score = 43.5 bits (101), Expect = 0.071, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 9/81 (11%) Query: 90 SRGGWPEL---PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 G W E P PL G V L+ L G S +D + + V FQ Sbjct: 157 GHGLWIEPAPSPGAPLGQGEEGTGVFALQAGLTRLGY---DCAPSGKYDEWTATVVSAFQ 213 Query: 147 MRHGLDP--SGMVDSSTLEAM 165 RH L G+ D T + Sbjct: 214 -RHWLQSRFDGIADGETRARL 233 >gi|159901130|ref|YP_001547377.1| ErfK/YbiS/YcfS/YnhG family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894169|gb|ABX07249.1| ErfK/YbiS/YcfS/YnhG family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 370 Score = 43.5 bits (101), Expect = 0.072, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 9/54 (16%) Query: 309 ASTKIEFYSRNNTY------MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 T + + Y +H T LF + R + GCV + +D WL Sbjct: 306 GETWVVPNVPHAMYFNGSVALHGTYWHNLFGSGTR-ISHGCVNL--PLDAAAWL 356 >gi|260434937|ref|ZP_05788907.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Synechococcus sp. WH 8109] gi|260412811|gb|EEX06107.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Synechococcus sp. WH 8109] Length = 55 Score = 43.5 bits (101), Expect = 0.073, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 3/57 (5%) Query: 315 FYSRNNTYMHDTPEPILFNNVVR-FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 + +H TP + GCVR+ + WL +TP + ++ Sbjct: 1 MSANEAICLHATPWQENTGKPFGVPRSHGCVRM--PMKHARWLFHNTPKGTPITMQA 55 >gi|312197181|ref|YP_004017242.1| peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] gi|311228517|gb|ADP81372.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] Length = 251 Score = 43.5 bits (101), Expect = 0.074, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 17/95 (17%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG--- 129 + ++ I D+ + G +P++ V L+ L I + + Sbjct: 159 QVFPTVQQGI---HDLGATGTFPDIA---------HP-VGTLQNALNIVNHKEAPQPGAL 205 Query: 130 -LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 F +AV+ FQ L +V T Sbjct: 206 SPDGVFGGMTANAVRAFQTAESLAADSVVGQRTWA 240 >gi|124514746|gb|EAY56258.1| protein of unknown function [Leptospirillum rubarum] gi|206602459|gb|EDZ38940.1| Protein of unknown function [Leptospirillum sp. Group II '5-way CG'] Length = 117 Score = 43.5 bits (101), Expect = 0.074, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V ++++ L+ G F A+ FQ H L +G VD++T +A+ Sbjct: 64 VMKVQKALVAKG---AKIKADGFFGPMTRKAIMAFQKTHKLKVTGHVDAATKKALG 116 >gi|163732765|ref|ZP_02140210.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] gi|161394125|gb|EDQ18449.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] Length = 196 Score = 43.5 bits (101), Expect = 0.076, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 16/135 (11%) Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R+ ++ + YW +P + + + R L ++ KE Sbjct: 45 RLRNDLEPFEIHVDPGQYALYWTLPDKKAIRYAVGIGRTQ---LYEHG-EFFVGAKKEWP 100 Query: 283 -----VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN----TYMHDTPEPILFN 333 E ++ + F G N + S + ++ + +H T +P Sbjct: 101 SWTPTPEMIERDPQSYARFADGMPGGINNPLGSRGLYLFTPSRGDTFLRIHGTNDPETIG 160 Query: 334 NVVRFETSGCVRVRN 348 R ++GC R+ N Sbjct: 161 ---RRVSNGCARLIN 172 >gi|152983342|ref|YP_001352705.1| hypothetical protein mma_1015 [Janthinobacterium sp. Marseille] gi|151283419|gb|ABR91829.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 199 Score = 43.5 bits (101), Expect = 0.076, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + + + A+K FQM GL +G + +STL A+ +P Sbjct: 155 DGQIDGVMNEDTKIALKRFQMIKGLPETGTMGTSTLNALGLPA 197 >gi|149640756|ref|XP_001508107.1| PREDICTED: similar to membrane-type matrix metalloproteinase 2 [Ornithorhynchus anatinus] Length = 920 Score = 43.5 bits (101), Expect = 0.076, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 14/108 (12%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRER--------LIISGDLDPSKGLSVAFDAY--VES 140 G P P R S+ +V +R L + G L + + S Sbjct: 395 DGKCPVGPSRSQSPRASTPTVLATSKRPDTPELSWLRLYGYLPQPSRQMSTMRSAQILAS 454 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDLRIRQLQVNLMRIK 184 A+ Q +G+ +G++D T + M P D +++ N+ R + Sbjct: 455 AISEMQRFYGITVTGVLDEETKDWMKRPRCGVPDQFGVRVKANMRRKR 502 >gi|228984101|ref|ZP_04144287.1| hypothetical protein bthur0001_8130 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775629|gb|EEM24009.1| hypothetical protein bthur0001_8130 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 746 Score = 43.5 bits (101), Expect = 0.076, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 16/141 (11%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPI---ISKETIAQTEKAIAFYQDI---LSRGGWPELPI 99 + +N +P S++ AI + + + + G + Sbjct: 151 RKIQQWLNNKYINRADF--FYMPCDGHYSRDVQKALMFAIQYEEGLKDGTANGYFGPTTQ 208 Query: 100 RPLHL-----GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + G++ V + LI + F ++ + +K FQ L + Sbjct: 209 EKIKPVVLKEGSTGTFVYLFQAALIFNDY---DVPFDGTFSTFMTTQLKQFQKFALLKAT 265 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G+ D T ++ V RQ Sbjct: 266 GVSDFQTWASLLVSTGDPERQ 286 >gi|254450592|ref|ZP_05064029.1| ErfK/YbiS/YcfS/YnhG family protein [Octadecabacter antarcticus 238] gi|198264998|gb|EDY89268.1| ErfK/YbiS/YcfS/YnhG family protein [Octadecabacter antarcticus 238] Length = 75 Score = 43.5 bits (101), Expect = 0.076, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 P + PG N + + + Y +H T + R ++GC+ + N Sbjct: 4 RNPEWPEFVGPGPDNPLGTHALYLS--WTYYRIHGTHDTRKIG---RRSSNGCIGLYN 56 >gi|126732715|ref|ZP_01748511.1| peptidoglycan binding domain protein [Sagittula stellata E-37] gi|126706845|gb|EBA05915.1| peptidoglycan binding domain protein [Sagittula stellata E-37] Length = 466 Score = 43.5 bits (101), Expect = 0.076, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +G WP RPL +S + L+ RL +G +KG+ A++ +Q R G Sbjct: 398 QGSWPR-DNRPL----TSSERKELQTRLTQAGY--DTKGVDGRIGPMTLQAIRGYQRRAG 450 Query: 151 LDPSGMVDSSTLEAMN 166 L P G L+ + Sbjct: 451 LVPDGYASMELLKKLR 466 >gi|311070871|ref|YP_003975794.1| YbfG protein [Bacillus atrophaeus 1942] gi|310871388|gb|ADP34863.1| YbfG [Bacillus atrophaeus 1942] Length = 725 Score = 43.1 bits (100), Expect = 0.077, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 20/164 (12%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP---IISKET 74 LI+ L + + S + + +P + +++T Sbjct: 128 LIMKALLDMSAFRLVPG------GNSRVRQIQQNLNRDYNDYIG----LMPCDGLYARDT 177 Query: 75 IAQTEKAIAFYQDI---LSRGGWPELPIR---PLHLGNSSVS-VQRLRERLIISGDLDPS 127 A+ + + ++ G + L G+S V ++ L +G Sbjct: 178 NKALIYALQKEEGMSTSVANGFFGNGTTNLCPTLTPGDSRTGFVLIVQYALYCNGKSFDP 237 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + V SAVK FQ L +G D T++A+ Sbjct: 238 GEFDGKYGVGVVSAVKAFQEFMCLPQTGYADMPTIKALLSSSGD 281 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA-------- 164 L+ L G G + F E+AVK FQ GL G+V + ++A Sbjct: 83 LQGALWCKGF--SPGGFTGVFFEQTENAVKKFQKAAGLTTQDGVVTALIMKALLDMSAFR 140 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + + R+RQ+Q NL R M + +L + G+ ++V G Sbjct: 141 LVPGGNSRVRQIQQNLNRDYNDYIGLMPCDGLYARDTNKALIYALQKEEGMSTSVANGFF 200 Query: 225 DRQTPILHSRIN 236 T L + Sbjct: 201 GNGTTNLCPTLT 212 >gi|145297589|ref|YP_001140430.1| general secretion pathway protein A [Aeromonas salmonicida subsp. salmonicida A449] gi|142850361|gb|ABO88682.1| general secretion pathway protein A [Aeromonas salmonicida subsp. salmonicida A449] Length = 547 Score = 43.1 bits (100), Expect = 0.077, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 9/168 (5%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIP-----IISKETIAQTEKAIAFYQDILSRGGW 94 + H + D + S P +I ++ + ++ + W Sbjct: 377 LQPLQHPALISLTDETGGIYYATLVSLGPDKANLLIGNQSWQVDRQWLSDFWGGSYTLLW 436 Query: 95 PELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +GN++ VQ L L + L FDA +++ ++ FQ GL+ Sbjct: 437 RMPKGGVALIGNNAGATQVQWLDNALSRA--LQQPDRKVRRFDAELKNKLQQFQREQGLN 494 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 P G+ S+TL +NV + +L+ R + +V + Sbjct: 495 PDGIAGSNTLLRLNVMAGEPMPRLEDESKRTGTPAKLDAMDDESMVTL 542 >gi|150397314|ref|YP_001327781.1| lytic murein transglycosylase [Sinorhizobium medicae WSM419] gi|150028829|gb|ABR60946.1| lytic murein transglycosylase [Sinorhizobium medicae WSM419] Length = 405 Score = 43.1 bits (100), Expect = 0.077, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 13/147 (8%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 +G++ + S L+ + + + + + T Sbjct: 272 WFALGVTPRDGNTSNSALEASLVLPQGRKGAAFLTYPNFNIYLEWNQSFIYTTSAAYFAT 331 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 A G P G ++ L+ RL G + + Sbjct: 332 RLA-----------GAPPYQQGNPEPGLGDAEMKALQTRLQALGH--DVGKIDGILGSGT 378 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A++ Q++ GL G + LEA+ Sbjct: 379 RAALQKEQLKLGLPADGWATQNLLEAL 405 >gi|295445967|gb|ADG21911.1| amidase [Alcaligenes sp. WRB10] Length = 254 Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 10/101 (9%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHS---IVNDRFDNFLARVDMGIDSDIPIISKE 73 YL + + S + S D ++ + P + Sbjct: 160 YLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQQALDK--GQLPTFVAGLAPQHPQ- 216 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQR 113 A +++ + WP+L + L G S V Sbjct: 217 -YAVMHESLLAL--LSDTKPWPQLTGKATLRPGQWSNDVPA 254 >gi|163867469|ref|YP_001608668.1| peptidoglycan-binding protein [Bartonella tribocorum CIP 105476] gi|161017115|emb|CAK00673.1| peptidoglycan-binding protein [Bartonella tribocorum CIP 105476] Length = 418 Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L+ RL G + + A+K FQ+ HGL +G Sbjct: 364 KELQSRLSALGYYKGN--VDGKIGTASRKAIKAFQLHHGLKANG 405 >gi|114704914|ref|ZP_01437822.1| hypothetical protein FP2506_08256 [Fulvimarina pelagi HTCC2506] gi|114539699|gb|EAU42819.1| hypothetical protein FP2506_08256 [Fulvimarina pelagi HTCC2506] Length = 1293 Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ ++ L G + +A+K FQ GL +G +D + + A+ Sbjct: 1234 AIRNIQAILGNLGY--DAGPPDGVIGDLTRTAIKDFQSDAGLASTGEIDEALIRAL 1287 >gi|322383009|ref|ZP_08056839.1| PDZ-containing carboxyl-terminal protease processing protease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153032|gb|EFX45492.1| PDZ-containing carboxyl-terminal protease processing protease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 467 Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 10/92 (10%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L + ++ + L +G F A E +VK FQ GL S Sbjct: 374 PLSKKSVLKRDENGEDIKNAQLMLTAAGF--KPDRTDGYFSAATEESVKAFQKAKGLTVS 431 Query: 155 GMVD--------SSTLEAMNVPVDLRIRQLQV 178 G +D +T+EA+ P + Q + Sbjct: 432 GQIDENTASKLERATIEAIKDPANDTQLQAAL 463 >gi|167463457|ref|ZP_02328546.1| Putative protease [Paenibacillus larvae subsp. larvae BRL-230010] Length = 481 Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 10/92 (10%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L + ++ + L +G F A E +VK FQ GL S Sbjct: 388 PLSKKSVLKRDENGEDIKNAQLMLTAAGF--KPDRTDGYFSAATEESVKAFQKAKGLTVS 445 Query: 155 GMVD--------SSTLEAMNVPVDLRIRQLQV 178 G +D +T+EA+ P + Q + Sbjct: 446 GQIDENTASKLERATIEAIKDPANDTQLQAAL 477 >gi|293604157|ref|ZP_06686565.1| type III effector HopAJ2 [Achromobacter piechaudii ATCC 43553] gi|292817382|gb|EFF76455.1| type III effector HopAJ2 [Achromobacter piechaudii ATCC 43553] Length = 411 Score = 43.1 bits (100), Expect = 0.079, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 2/69 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + L+ LI G A A+K Q GL G L+ Sbjct: 345 PGLSRAERRELQSLLIAKGY--EVGEPDGMVGARTRQALKAAQESLGLPADGRAGQKALQ 402 Query: 164 AMNVPVDLR 172 A+ R Sbjct: 403 ALRASSAPR 411 >gi|254468530|ref|ZP_05081936.1| ErfK/YbiS/YcfS/YnhG [beta proteobacterium KB13] gi|207087340|gb|EDZ64623.1| ErfK/YbiS/YcfS/YnhG [beta proteobacterium KB13] Length = 155 Score = 43.1 bits (100), Expect = 0.079, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 Y+H T + + + GC+R++N +I L + Sbjct: 111 IYIHGTHDEENIGHP---VSHGCIRMKNKDVISLFDLV 145 >gi|207724810|ref|YP_002255207.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum MolK2] gi|206590035|emb|CAQ36996.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum MolK2] Length = 390 Score = 43.1 bits (100), Expect = 0.079, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +QRL+++L G + + A++ +Q H L G S L + Sbjct: 334 ADIQRLQQKLTDRGY--DPGTIDGIIGDRTQQAIRAYQKDHQLPQDGYASRSLLARLEQ 390 >gi|91775566|ref|YP_545322.1| lytic murein transglycosylase [Methylobacillus flagellatus KT] gi|91709553|gb|ABE49481.1| Lytic murein transglycosylase [Methylobacillus flagellatus KT] Length = 417 Score = 43.1 bits (100), Expect = 0.079, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +V+RL+++L G + G ++A++ +Q H L G S L+ + Sbjct: 341 DAVKRLQQQLTELGF--DTGGSDGLPGPRTQAAIRGYQFAHALPADGYASPSLLQHVATT 398 Query: 169 VDLRIR 174 + + Sbjct: 399 LASQAE 404 >gi|46205977|ref|ZP_00210118.1| COG2951: Membrane-bound lytic murein transglycosylase B [Magnetospirillum magnetotacticum MS-1] Length = 167 Score = 43.1 bits (100), Expect = 0.079, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L+ RL G G +A++ FQ GL P G D+ L+ + + Sbjct: 110 LQTRLAGLGY--AVGGADGKVGPKTRAAIRAFQTATGLVPDGYADAGLLDRIRATGEA 165 >gi|294812816|ref|ZP_06771459.1| Membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294325415|gb|EFG07058.1| Membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 542 Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 19/68 (27%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S SV RL ERL G D A + Q G + G Sbjct: 411 FRPGAVSPSVTRLGERLRQLGYGRHYTSGPGPDWGEADRRNVEAFQRAQGWSGTEADGYP 470 Query: 158 DSSTLEAM 165 T + Sbjct: 471 GPHTWRRL 478 >gi|285018691|ref|YP_003376402.1| lytic murein transglycosylase precursor transmembrane protein [Xanthomonas albilineans GPE PC73] gi|283473909|emb|CBA16410.1| probable lytic murein transglycosylase precursor transmembrane protein [Xanthomonas albilineans] Length = 425 Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L++RL G + A++ FQ L G +S L + Sbjct: 368 AEITELQKRLNEKGF--DVGSVDGTLGPRTRQAIRAFQRSQQLPQDGYASTSLLARLRA 424 >gi|163735687|ref|ZP_02143118.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] gi|161391115|gb|EDQ15453.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] Length = 190 Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 5/84 (5%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMH 324 L + EK + P + G N + + + + +H Sbjct: 92 LTRLGYTEVVEKRENPSWAPTPSMRERNPEWPAVIPGGDPANPLGTRALYLSWQY-YRIH 150 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T + R ++GC+ + N Sbjct: 151 GTQDTRKIG---RRSSNGCIGLYN 171 >gi|260576429|ref|ZP_05844419.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sp. SW2] gi|259021312|gb|EEW24618.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sp. SW2] Length = 238 Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 45/195 (23%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + R + N R+ + V+V+ A L V + LR + VG Sbjct: 45 FAMAAVPRAYLTERN-RRVTVAYTGPEPVGTVVVDPYARYLYLVTGPQRALRYGIAVGEQ 103 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 R + + R P W ++I+ +P+ Sbjct: 104 GRN-FSGSAVVRRKQHWPSWTPTPNMIRT--------NPELYA----------------- 137 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETS 341 + G N M + + R+ Y +H T E Sbjct: 138 ----------PYARGLPGGPPNPMGARALYLYQGGRDTFYRIHGTQESSAVGKATVA--- 184 Query: 342 GCVRV--RNIIDLDV 354 GC+R+ ++ IDL Sbjct: 185 GCIRLFNQDAIDLFD 199 >gi|221640695|ref|YP_002526957.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides KD131] gi|332559673|ref|ZP_08413995.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides WS8N] gi|221161476|gb|ACM02456.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides KD131] gi|332277385|gb|EGJ22700.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides WS8N] Length = 176 Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 48/170 (28%) Query: 183 IKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + VLV+I + +L E+G+ L V D T + + + + Sbjct: 32 LDWQPYFSNLRNGAVLVDITSRALHFWSEDGQTYLLFPTSVPLSDDLTRRGRTEVVQKVV 91 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W ++ + ++P++ Sbjct: 92 APPWRPTPAMKE--------RNPEW-------------------------------PDMV 112 Query: 301 DPG-KINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + Y +H T + R ++GC+ + N Sbjct: 113 PGGAPDNPLGTHALYLS--WTYYRIHGTHDTRKIG---RKSSNGCIGLYN 157 >gi|163761303|ref|ZP_02168378.1| putative hemagglutinin protein [Hoeflea phototrophica DFL-43] gi|162281460|gb|EDQ31756.1| putative hemagglutinin protein [Hoeflea phototrophica DFL-43] Length = 1297 Score = 43.1 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 41/117 (35%), Gaps = 9/117 (7%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSS 108 ++ F+ + + + I A+ + + GG + Sbjct: 1185 DEVFNALRPEQAEAAREAVANWTAQPINAEANAV---EIPAAWGGDSTETASV----DMG 1237 Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ ++ L +G + +A+K FQ G++P+G +D ++ + Sbjct: 1238 KAIRNIQAILNNNGF--DAGAPDGVMGKRTVAAIKAFQSSIGMEPTGEIDDRLVKEL 1292 >gi|326441234|ref|ZP_08215968.1| hypothetical protein SclaA2_09211 [Streptomyces clavuligerus ATCC 27064] Length = 525 Score = 43.1 bits (100), Expect = 0.081, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 19/68 (27%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S SV RL ERL G D A + Q G + G Sbjct: 394 FRPGAVSPSVTRLGERLRQLGYGRHYTSGPGPDWGEADRRNVEAFQRAQGWSGTEADGYP 453 Query: 158 DSSTLEAM 165 T + Sbjct: 454 GPHTWRRL 461 >gi|299133806|ref|ZP_07027000.1| lytic murein transglycosylase [Afipia sp. 1NLS2] gi|298591642|gb|EFI51843.1| lytic murein transglycosylase [Afipia sp. 1NLS2] Length = 407 Score = 43.1 bits (100), Expect = 0.082, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +Q ++ RL +G + G AVK FQ + GL G + L + Sbjct: 350 AEIQEVQTRLTRAGF--NTGGTDGRVGNDTMKAVKDFQTKVGLPADGYAGLTVLARLR 405 >gi|212638261|ref|YP_002314781.1| N-acetylmuramoyl-L-alanine amidase fused to LysM and peptidoglycan binding domain [Anoxybacillus flavithermus WK1] gi|212559741|gb|ACJ32796.1| N-acetylmuramoyl-L-alanine amidase fused to LysM and peptidoglycan binding domain [Anoxybacillus flavithermus WK1] Length = 396 Score = 43.1 bits (100), Expect = 0.082, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPS 154 +LP + L G+ V+ L++ L F AVK + G + + Sbjct: 319 KLPNKVLRYGDRGEDVRILQQALNEIHF--KCGEEDGVFGKKTLDAVKRVNLMFSGGNKN 376 Query: 155 GMVDSSTLEAMNVPVDLRIR 174 G+ D T + + +++ Sbjct: 377 GIYDEKTKNYIISKLKEKMK 396 >gi|153955852|ref|YP_001396617.1| glycosyl hydrolase [Clostridium kluyveri DSM 555] gi|219856212|ref|YP_002473334.1| hypothetical protein CKR_2869 [Clostridium kluyveri NBRC 12016] gi|146348710|gb|EDK35246.1| Predicted glycosyl hydrolase [Clostridium kluyveri DSM 555] gi|219569936|dbj|BAH07920.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 306 Score = 43.1 bits (100), Expect = 0.082, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ S V ++++L L + + +D AV Q G++ T Sbjct: 243 GHKSHVVLWIQQKLEQYEYLKENSYTQMLYDEPTFQAVTELQKNWERPTDGVLKIETWN 301 >gi|298290683|ref|YP_003692622.1| peptidoglycan-binding protein [Starkeya novella DSM 506] gi|296927194|gb|ADH88003.1| Peptidoglycan-binding domain 1 protein [Starkeya novella DSM 506] Length = 225 Score = 43.1 bits (100), Expect = 0.083, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%) Query: 99 IRPLHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G S + +++ L G + + A++ F+ L +G Sbjct: 150 ASLLPPGEVPVSPRIVEIQKALARLGY--GPLRVDGRTGEATKQAIERFERDRRLPVTGD 207 Query: 157 VDSSTLEAMNV 167 V + +N Sbjct: 208 VSDRLIRELNA 218 >gi|326314908|ref|YP_004232580.1| peptidoglycan-binding domain 1 protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371744|gb|ADX44013.1| Peptidoglycan-binding domain 1 protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 346 Score = 43.1 bits (100), Expect = 0.083, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ + RL G + ++ FQ GL +G +DS+T +A++ Sbjct: 292 VREAQARLNALGY--DVGAPDGGMGPKTTNGLRAFQKDKGLPVTGRLDSATTDALSR 346 >gi|326315762|ref|YP_004233434.1| peptidoglycan-binding domain 1 protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372598|gb|ADX44867.1| Peptidoglycan-binding domain 1 protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 356 Score = 43.1 bits (100), Expect = 0.083, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ + RL G + ++ FQ GL +G +DS+T +A++ Sbjct: 302 VREAQARLNALGY--DVGAPDGGMGPKTTNGLRAFQKDKGLPVTGRLDSATTDALSR 356 >gi|225452580|ref|XP_002280833.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147807820|emb|CAN73129.1| hypothetical protein VITISV_030257 [Vitis vinifera] Length = 319 Score = 43.1 bits (100), Expect = 0.083, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY------VESAVKLFQMRHGLDPSGMVD 158 G+ +Q+L++ L G L S+ + +ESA+K +Q + L+ +G +D Sbjct: 52 GDEVNGIQKLKKYLEQFGYLSYSRSKNQTHADDDDFDDLLESAIKTYQANYHLEATGDLD 111 Query: 159 SSTLEAMNVP 168 S T+ M P Sbjct: 112 SETVSEMVKP 121 >gi|22218341|ref|NP_671724.1| matrix metalloproteinase-21 preproprotein [Homo sapiens] gi|317373390|sp|Q8N119|MMP21_HUMAN RecName: Full=Matrix metalloproteinase-21; Short=MMP-21; Flags: Precursor gi|22134532|gb|AAM92903.1|AF331526_1 putative matrix metalloproteinase [Homo sapiens] gi|55661689|emb|CAH73211.1| matrix metallopeptidase 21 [Homo sapiens] gi|55959618|emb|CAI12086.1| matrix metallopeptidase 21 [Homo sapiens] gi|162318546|gb|AAI56369.1| Matrix metallopeptidase 21 [synthetic construct] gi|225000648|gb|AAI72493.1| Matrix metallopeptidase 21 [synthetic construct] Length = 569 Score = 43.1 bits (100), Expect = 0.083, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 29/143 (20%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L ++L + + + F + P+ + IA A Sbjct: 2 LAASIFRPTLLLCWLAAPWPTQPESLFHSRDRSDLEP----SPLRQAKPIADLHAA---- 53 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q LSR GW + G + A + AV+ F Sbjct: 54 QRFLSRYGWSGVWA--------------------AWGPSPEGPPETPK-GAALAEAVRRF 92 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q + L SG +D++TL AMN P Sbjct: 93 QRANALPASGELDAATLAAMNRP 115 >gi|304409318|ref|ZP_07390938.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS183] gi|307303676|ref|ZP_07583429.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica BA175] gi|304351836|gb|EFM16234.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS183] gi|306912574|gb|EFN42997.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica BA175] Length = 557 Score = 43.1 bits (100), Expect = 0.084, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 + FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N R Sbjct: 500 RNARRVNQFDVQLENDLKSFQSQHGLKADGIAGNQTLVRLNLYLSQQGPRLTDNGAR 556 >gi|288916296|ref|ZP_06410675.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] gi|288352275|gb|EFC86473.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] Length = 263 Score = 43.1 bits (100), Expect = 0.084, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 22/94 (23%) Query: 87 DILSRGGWPELP-------------IRPLHLGNSSVS------VQRLRERLIISGDLDPS 127 ++ W + L G V ++ RLI Sbjct: 168 GLIDASKWGSVAPASTGATYDEPPMAYTLWEGAKDPVQGKYSFVHWVQARLI---HHTLR 224 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + F A AVK FQ+ GL P G+ T Sbjct: 225 ITVDGDFGAKTTEAVKTFQVSRGLKPDGVFGPVT 258 >gi|217974314|ref|YP_002359065.1| peptidoglycan-binding domain 1 protein [Shewanella baltica OS223] gi|217499449|gb|ACK47642.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS223] Length = 557 Score = 43.1 bits (100), Expect = 0.084, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 + FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N R Sbjct: 500 RNARRVNQFDVQLENDLKSFQSQHGLKADGIAGNQTLVRLNLYLSQQGPRLTDNGAR 556 >gi|281357530|ref|ZP_06244018.1| ErfK/YbiS/YcfS/YnhG family protein [Victivallis vadensis ATCC BAA-548] gi|281316133|gb|EFB00159.1| ErfK/YbiS/YcfS/YnhG family protein [Victivallis vadensis ATCC BAA-548] Length = 422 Score = 43.1 bits (100), Expect = 0.084, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 66/214 (30%), Gaps = 57/214 (26%) Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE----NGKVGLR 216 T++A+ + + L N++ + K L G + V A L+ G++ Sbjct: 258 TIDAIKISSRMP---LANNILPLGKRLVIYPGPWKIKVEKSARLLKLYNEFPAGGRLYAV 314 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 + +GR+ R TP I+ + NP W P + +Y N+ Sbjct: 315 FDIGIGRLGR-TPSADFVISTKLKNPDWYTPEG-----------RVIKYGDPENML---- 358 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPG--KINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 ++ + P + +H T + Sbjct: 359 -----------------GDYFLKLAPTGTPDKPL----------LGYGIHGTRDDASVTK 391 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 ++GC+R+ N L + P+ + I Sbjct: 392 SQ---SNGCIRMHNAD--VETLYRIVPSRTPVEI 420 >gi|21693575|gb|AAM75352.1|AF520613_1 matrix metalloproteinase-21 [Homo sapiens] gi|21928002|gb|AAM78033.1| MMP21 protein [Homo sapiens] gi|58003496|gb|AAW62254.1| matrix metalloproteinase 21 [Homo sapiens] Length = 569 Score = 43.1 bits (100), Expect = 0.084, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 29/143 (20%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L ++L + + + F + P+ + IA A Sbjct: 2 LAASIFRPTLLLCWLAAPWPTQPESLFHSRDRSDLEP----SPLRQAKPIADLHAA---- 53 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q LSR GW + G + A + AV+ F Sbjct: 54 QRFLSRYGWSGVWA--------------------AWGPSPEGPPETPK-GAALAEAVRRF 92 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q + L SG +D++TL AMN P Sbjct: 93 QRANALPASGELDAATLAAMNRP 115 >gi|312880800|ref|ZP_07740600.1| ErfK/YbiS/YcfS/YnhG family protein [Aminomonas paucivorans DSM 12260] gi|310784091|gb|EFQ24489.1| ErfK/YbiS/YcfS/YnhG family protein [Aminomonas paucivorans DSM 12260] Length = 156 Score = 43.1 bits (100), Expect = 0.086, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 43/172 (25%), Gaps = 61/172 (35%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--------RVDRQTPILHSRINRIM 239 + G ++ + L V V +G R DR+TP + RI Sbjct: 19 AEPAGEVWLKIEKGQHRLVVFRGQAVWDAFPVALGSNPGQKQRRGDRRTPEGEFSVVRIQ 78 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 + W D KG+ Sbjct: 79 DSRAWTH-------------------------DFRDGKGEI------------------- 94 Query: 300 QDPGKINAMASTKIEFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 PG A I + +H T +P T GC+R+RN Sbjct: 95 --PG---AYGPWFIRLKTGWDGIGIHGTHDPSSVGKD---VTEGCIRLRNAD 138 >gi|160874352|ref|YP_001553668.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS195] gi|160859874|gb|ABX48408.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS195] gi|315266587|gb|ADT93440.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS678] Length = 557 Score = 43.1 bits (100), Expect = 0.087, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N R Sbjct: 506 NQFDVQLENDLKSFQSQHGLKADGIAGNQTLVRLNLYLSQQGPRLTDNGAR 556 >gi|157278505|ref|NP_001098354.1| membrane-type matrix metalloproteinase [Oryzias latipes] gi|46359591|dbj|BAD15298.1| membrane-type matrix metalloproteinase [Oryzias latipes] Length = 607 Score = 43.1 bits (100), Expect = 0.087, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L + G L P+ + ++SA+ Q R+GL+ +G +DS+T+E M P Sbjct: 45 LQMYGYLPPADPRMAVLRSAKVMQSAIAAMQRRYGLNVTGTLDSNTIEWMRQP 97 >gi|126173395|ref|YP_001049544.1| peptidoglycan binding domain-containing protein [Shewanella baltica OS155] gi|125996600|gb|ABN60675.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS155] Length = 557 Score = 43.1 bits (100), Expect = 0.087, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N R Sbjct: 506 NQFDVQLENDLKSFQSQHGLKADGIAGNQTLVRLNLYLSQQGPRLTDNGAR 556 >gi|85707010|ref|ZP_01038099.1| hypothetical protein ROS217_03105 [Roseovarius sp. 217] gi|85668451|gb|EAQ23323.1| hypothetical protein ROS217_03105 [Roseovarius sp. 217] Length = 191 Score = 43.1 bits (100), Expect = 0.088, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 47/209 (22%) Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIP-AA 203 + R L +G V + L + V + + + + + +++ G Y + P Sbjct: 2 KRRKFLFATGAVGA--LCSQPVSAHVVLPKYDLPPEYLPQVVSIPGGADPYEIHVFPSQF 59 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 +L + +R TV +GR + P W +++++ Sbjct: 60 ALFWTQPDNTAIRYTVGIGRPSLY-EAGEFYVGAKKEWPSWTPTPGMLRREP-------- 110 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNT 321 + G N + + + R +T Sbjct: 111 ---------------------------QKYGPLRNGMPGGLSNPLGARALYLFQPGRGDT 143 Query: 322 YM--HDTPEPILFNNVVRFETSGCVRVRN 348 ++ H T +P R ++GC R+ N Sbjct: 144 FLRVHGTNDPTTIG---RAVSNGCARLVN 169 >gi|194015385|ref|ZP_03054001.1| S41A subfamily peptidase [Bacillus pumilus ATCC 7061] gi|194012789|gb|EDW22355.1| S41A subfamily peptidase [Bacillus pumilus ATCC 7061] Length = 482 Score = 43.1 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL L ++ V++ + L G + FD + AV FQ + LD SG++D Sbjct: 390 KEPLQLDMNNEEVRQAQTLLK--GLSFDPGRVDGYFDEETKKAVLAFQSTYNLDKSGVID 447 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKK 185 +T + MN VD ++ + N ++++ Sbjct: 448 LNTAKMMNKMVDE-VKSYEKNDLQLQT 473 >gi|222087083|ref|YP_002545618.1| membrane-bound lytic murein transglycosylase protein [Agrobacterium radiobacter K84] gi|221724531|gb|ACM27687.1| membrane-bound lytic murein transglycosylase protein [Agrobacterium radiobacter K84] Length = 407 Score = 43.1 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + GG WP P L + L+ RL G D + F + ++A+ Sbjct: 330 QLAGYGGMQQSWPR-PSGTLDVKQK----FELQTRLKELGYYD--GVVDGNFGSGSKAAI 382 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 Q R G+D G S L A+ Sbjct: 383 AAVQQRIGMDADGEPSMSLLNALRK 407 >gi|254488538|ref|ZP_05101743.1| peptidoglycan-binding domain 1 protein [Roseobacter sp. GAI101] gi|214045407|gb|EEB86045.1| peptidoglycan-binding domain 1 protein [Roseobacter sp. GAI101] Length = 496 Score = 43.1 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG + L+ RL+ G S F + AV +Q R G +G + + + Sbjct: 431 LGLTRAERVDLQRRLVRLGY--KSSPTDGIFSSETRRAVAEWQAREGETATGYLTADQVR 488 Query: 164 AMNV 167 + V Sbjct: 489 LIRV 492 >gi|157374224|ref|YP_001472824.1| peptidoglycan binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316598|gb|ABV35696.1| peptidoglycan-binding domain 1 protein [Shewanella sediminis HAW-EB3] Length = 541 Score = 43.1 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G + +Q L L + P FD+ +E +K FQ HGL Sbjct: 448 WQAPSDQPREIGQGANPAQIQWLENSLAHIDNTVPRLV--NRFDSQLEEQLKRFQREHGL 505 Query: 152 DPSGMVDSSTLEAMN 166 + S TL +N Sbjct: 506 RADAIAGSQTLVQLN 520 >gi|302383894|ref|YP_003819717.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Brevundimonas subvibrioides ATCC 15264] gi|302194522|gb|ADL02094.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Brevundimonas subvibrioides ATCC 15264] Length = 253 Score = 43.1 bits (100), Expect = 0.090, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMV 157 PL +G+ + V L+ L G + V+ FQ G+ Sbjct: 172 GPPLTIGDEGLGVHVLQAGLHRLGY---EPLPDGRYTDETRITVEAFQRHWRPSKVDGIA 228 Query: 158 DSSTLE 163 D T Sbjct: 229 DGETRA 234 >gi|332969801|gb|EGK08812.1| type III effector HopAJ2 [Psychrobacter sp. 1501(2011)] Length = 466 Score = 43.1 bits (100), Expect = 0.091, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 9/110 (8%) Query: 75 IAQTEKAIAFYQDILS-RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 IA + I + WP G S + ++E L + G Sbjct: 307 IAHLSQQIEKKDTHVDFATPWPTDD-----PGLSRKESRDVQEALNLLGY--DIGEADGI 359 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSS-TLEAMNVPVDLRIRQLQVNLMR 182 A++ +Q +GL+P G M+ +L+ Q + + Sbjct: 360 IGDDTRRAIQKYQADNGLEPDGKAGKKIHQHLMDKSAELKQAQSEQSTED 409 >gi|16901508|gb|AAL27029.1| matrix metalloproteinase MMP2 [Glycine max] Length = 357 Score = 43.1 bits (100), Expect = 0.091, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 12/116 (10%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE-SAVKLFQMRHGLDPSGMVDSSTLEAM 165 S+ V +++ L G ++ S LS + D SA+K +Q + L P+G +++ TL+ M Sbjct: 74 SAPPVSLIKDYLSNYGYIESSGPLSNSMDQETIISAIKTYQQYYCLQPTGKLNNETLQQM 133 Query: 166 N-VPVDLRIRQLQVNLMRI---------KKLLEQKMGLRYV-LVNIPAASLEAVEN 210 + + + + N + + ++ IPA + + Sbjct: 134 SFLRCGVPDINIDYNFTDDNMSYPKAGHRWFPHTNLTYGFLPENQIPANMTKVFRD 189 >gi|255263712|ref|ZP_05343054.1| ErfK/YbiS/YcfS/YnhG family protein [Thalassiobium sp. R2A62] gi|255106047|gb|EET48721.1| ErfK/YbiS/YcfS/YnhG family protein [Thalassiobium sp. R2A62] Length = 193 Score = 43.1 bits (100), Expect = 0.092, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 6/68 (8%) Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFET 340 P + PG N + S + Y +H T + R + Sbjct: 112 SWRPTPAMRKRNPEWPEFVGPGPDNPLGSHALYLS--WTYYRIHGTHDTRKIG---RRSS 166 Query: 341 SGCVRVRN 348 +GC+ + N Sbjct: 167 NGCIGLYN 174 >gi|182415294|ref|YP_001820360.1| ErfK/YbiS/YcfS/YnhG family protein [Opitutus terrae PB90-1] gi|177842508|gb|ACB76760.1| ErfK/YbiS/YcfS/YnhG family protein [Opitutus terrae PB90-1] Length = 156 Score = 43.1 bits (100), Expect = 0.092, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 28/172 (16%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH----SRINRIMFNPYWVIPRSI 250 ++V I +L+ G + V R + ++ I P + Sbjct: 1 MLVVRIGTGTLQFYRAGVMVRSYAVSTSRRPSSNIKGSLGTPTGLHEIAERIGAGQPPGM 60 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + K + R ++ + G+ + + W G++++ Sbjct: 61 VFKSRIPTGRHFSEFAESE------AAGQLIT-SRILWLR---GLEPGVNRGGEVDS--- 107 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H T + ++GC+ +RN +I+L + Sbjct: 108 ------YDRYIYVHGTNHEDRIGEPM---SAGCIEMRNMDVIELFEEVRAGD 150 >gi|120556504|ref|YP_960855.1| lytic murein transglycosylase [Marinobacter aquaeolei VT8] gi|120326353|gb|ABM20668.1| lytic murein transglycosylase [Marinobacter aquaeolei VT8] Length = 410 Score = 43.1 bits (100), Expect = 0.092, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G PS + A++ +Q GL G L A+ V Sbjct: 351 QVLELQQALNDKGY--PSGEPDGILGSNTRKAIRAYQKAEGLVADGFPSEQVLAALGV 406 >gi|332968027|gb|EGK07114.1| N-acetylmuramoyl-L-alanine amidase [Desmospora sp. 8437] Length = 147 Score = 43.1 bits (100), Expect = 0.093, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 4/70 (5%) Query: 105 GNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHG---LDPSGMVDSS 160 G S +V + +RL+ G D G F V+ FQ G D G Sbjct: 74 GKSHPAVTLMGKRLVAHGFDKHYKVGPGPTFSEADRKNVQDFQKAQGWTGSDADGYPGPE 133 Query: 161 TLEAMNVPVD 170 T + + V Sbjct: 134 TWKRLMATVK 143 >gi|159037243|ref|YP_001536496.1| peptidoglycan binding domain-containing protein [Salinispora arenicola CNS-205] gi|157916078|gb|ABV97505.1| Peptidoglycan-binding domain 1 protein [Salinispora arenicola CNS-205] Length = 270 Score = 43.1 bits (100), Expect = 0.094, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 14/46 (30%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 G + +K FQ GL G++ T +A Sbjct: 223 YLRKAGHDGRYGPEHRELIKAFQTDQGLSRDGLLGRKTWDAAYRNP 268 >gi|160879586|ref|YP_001558554.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428252|gb|ABX41815.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 275 Score = 43.1 bits (100), Expect = 0.096, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ ++E+L +G F + +S V+ FQ + L G +TL ++ Sbjct: 33 DGVKTMQEKLNKAGY--NCGTADGKFGSTTDSKVRSFQTANSLTVDGCAGKNTLTKLDA 89 >gi|23010179|ref|ZP_00050958.1| COG1376: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 192 Score = 43.1 bits (100), Expect = 0.096, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 12/78 (15%) Query: 308 MASTKIEFYSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLK 358 + + + +H T + + R + GCVR+ RN L + + Sbjct: 74 FSREWDNAPMPHAIFFTQVGHAIHGTTQTR---RLGRAASHGCVRLSQRNAATLFALVKQ 130 Query: 359 DTPTWSRYHIEEVVKTRK 376 T +R IE + + Sbjct: 131 QTMARTRVVIEGSGEAGE 148 >gi|39933165|ref|NP_945441.1| peptidoglycan-binding domain 1 [Rhodopseudomonas palustris CGA009] gi|39652790|emb|CAE25529.1| unknown protein [Rhodopseudomonas palustris CGA009] Length = 447 Score = 43.1 bits (100), Expect = 0.097, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G+ Q ++ L +GD + ++ + +A+K FQ G P+G++ Sbjct: 42 TAKTLAQGDR----QAIQSDLAWTGDY--NGLINGEVSDRMIAAIKQFQTNQGHKPTGVL 95 Query: 158 DSS 160 + Sbjct: 96 NPQ 98 >gi|222874548|gb|EEF11679.1| predicted protein [Populus trichocarpa] Length = 238 Score = 43.1 bits (100), Expect = 0.098, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +++L G + + ++A++ FQ L +G +D +T +A+ Sbjct: 187 QQKLNALGY--TAGTPDGSMGKNTQNALREFQRDQSLPQTGRLDRATSQALQQ 237 >gi|160895502|ref|YP_001561084.1| peptidoglycan-binding domain-containing protein [Delftia acidovorans SPH-1] gi|160361086|gb|ABX32699.1| Peptidoglycan-binding domain 1 protein [Delftia acidovorans SPH-1] Length = 344 Score = 43.1 bits (100), Expect = 0.098, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +++L G + + ++A++ FQ L +G +D +T +A+ Sbjct: 293 QQKLNALGY--TAGTPDGSMGKNTQNALREFQRDQSLPQTGRLDRATSQALQQ 343 >gi|332519371|ref|ZP_08395838.1| Peptidoglycan-binding domain 1 protein [Lacinutrix algicola 5H-3-7-4] gi|332045219|gb|EGI81412.1| Peptidoglycan-binding domain 1 protein [Lacinutrix algicola 5H-3-7-4] Length = 219 Score = 43.1 bits (100), Expect = 0.100, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 LP + L+ G S + +++ L+ G + + ++ +A++ F+ ++ L P G Sbjct: 151 MLPQKALYFGEKSAFIFEMQKLLLAKGY---NIPVDGVYEKKTSNALQAFETKNNLYPDG 207 Query: 156 MVDSSTLE 163 +D +L Sbjct: 208 KIDKMSLN 215 >gi|328544294|ref|YP_004304403.1| Lytic murein transglycosylase subfamily [polymorphum gilvum SL003B-26A1] gi|326414036|gb|ADZ71099.1| Lytic murein transglycosylase subfamily [Polymorphum gilvum SL003B-26A1] Length = 379 Score = 43.1 bits (100), Expect = 0.100, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 19/140 (13%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGI---DSDIPIISKETI 75 +G++ + L + + + S + S + Sbjct: 246 WARLGVTARAGSLPPGALAASLILPQGRKGPKFL--AYPNFAVYLKWNQSFVYTTSAAYL 303 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 A A Y G + ++ L+++L G + Sbjct: 304 ATRLAGAAPYD------------AGSPEPGLADAEMRLLQQKLQARGH--DVGKIDGILG 349 Query: 136 AYVESAVKLFQMRHGLDPSG 155 + +AV+ Q+R GL G Sbjct: 350 SGTRAAVRAEQLRLGLPADG 369 >gi|304403864|ref|ZP_07385526.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus curdlanolyticus YK9] gi|304346842|gb|EFM12674.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus curdlanolyticus YK9] Length = 469 Score = 43.1 bits (100), Expect = 0.100, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 12/118 (10%) Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P II + L + + + G+ E E PN Sbjct: 323 NEPLRIIVDKSVHRLAVVSGDVLVRSYKIGLGGGRTPEGEFNISEKVENPNGR------S 376 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 S + + +H T EP + GC+R+ ++ +L + T Sbjct: 377 DGPFGSRGMTLSNTR-YAIHGTDEPQSLGGDE---SLGCIRMSREDVEELYDLVPLGT 430 >gi|302381169|ref|YP_003816992.1| peptidoglycan-binding protein [Brevundimonas subvibrioides ATCC 15264] gi|302191797|gb|ADK99368.1| Peptidoglycan-binding domain 1 protein [Brevundimonas subvibrioides ATCC 15264] Length = 269 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ L+ L+ G + E+A+K +Q L P ++ T +A+ Sbjct: 2 DVRALQRLLLAQGF--DPGPIDGQIGKKTEAALKAWQAARRLLPDAVIGPRTRDALAA 57 >gi|226941433|ref|YP_002796507.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] gi|226716360|gb|ACO75498.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] Length = 218 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 13/179 (7%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + G ++ V + + +L + R VI + S ++ Sbjct: 46 NPRHPGEPWIRVGVGSQTLTLFDGDGTPRRHWVISTAKNGVGEQFGSYQTPRGWHTVCDK 105 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + D + RQD + + + K+ + + W F Q Sbjct: 106 IGADAAPDAIFYRRQDTGWRYSAEL-ARENPDKDWILTRILW--LCGAEPGFNQGELPDG 162 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTW 363 + + Y+H + F + GCVR+ DL + T W Sbjct: 163 TLVD-----SYQRGIYIHGGGAHVPFGTPT---SKGCVRMTTPSVIDLFELVPTGTDVW 213 >gi|153009062|ref|YP_001370277.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum anthropi ATCC 49188] gi|151560950|gb|ABS14448.1| N-acetylmuramoyl-L-alanine amidase family 2 [Ochrobactrum anthropi ATCC 49188] Length = 268 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSS 160 L G + V+ L+ L + G ++ FD E+ +K FQ + G+ D S Sbjct: 195 LARGENGQPVEALQSMLALYGY---EIAITGVFDEGTETVIKAFQRHFRTQNVDGVADVS 251 Query: 161 TLE 163 T++ Sbjct: 252 TID 254 >gi|332716513|ref|YP_004443979.1| putative membrane-bound lytic murein transglycosylase [Agrobacterium sp. H13-3] gi|325063198|gb|ADY66888.1| putative membrane-bound lytic murein transglycosylase [Agrobacterium sp. H13-3] Length = 423 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 11/84 (13%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 +I GG WP P L + L+ R+ G D + F + ++A+ Sbjct: 346 EIAGYGGMQQKWPR-PDGTLDIREK----FELQTRMKELGYYDGE--VDGNFGSGSKAAI 398 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMN 166 Q R GL+ G L A+ Sbjct: 399 SAIQSRMGLETDGQPSQRLLRALR 422 >gi|121602044|ref|YP_989279.1| ErfK/YbiS/YcfS/YnhG family protein [Bartonella bacilliformis KC583] gi|120614221|gb|ABM44822.1| ErfK/YbiS/YcfS/YnhG family protein [Bartonella bacilliformis KC583] Length = 232 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 22/197 (11%), Positives = 54/197 (27%), Gaps = 44/197 (22%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + + R + E ++++ L + LR + VG+ Sbjct: 57 PAIDLTTIHPKFWRQQVDYETTYPPGTLVIDTEKCFLYLIRENGKALRYGIGVGKEG-LA 115 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I P W +++ ++ Sbjct: 116 FQGTGVIQYKRQWPSWRPTAAMMAREP--------------------------------- 142 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVR 345 + G N + + + ++ + +H + E +SGC+R Sbjct: 143 --ERYGHLGEGMPAGPENPLGARALYLFQDGKDTLFRIHGSHETWSIGQ---AISSGCIR 197 Query: 346 V--RNIIDLDVWLLKDT 360 + ++IIDL + + Sbjct: 198 LLNQDIIDLYDRVPNGS 214 >gi|331699437|ref|YP_004335676.1| peptidoglycan-binding domain 1 protein [Pseudonocardia dioxanivorans CB1190] gi|326954126|gb|AEA27823.1| Peptidoglycan-binding domain 1 protein [Pseudonocardia dioxanivorans CB1190] Length = 171 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P++P+ S +++ L++ L ++ +A A+ Q L +G + Sbjct: 93 PVKPVTPVAPSAAIETLQKELGQLNYY--EGPVTGVMNAQTTQAITYLQRDAHLPQTGTM 150 Query: 158 DSSTLEAMN 166 +++T A+ Sbjct: 151 NAATQAALA 159 >gi|321469983|gb|EFX80961.1| hypothetical protein DAPPUDRAFT_303785 [Daphnia pulex] Length = 559 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 15/82 (18%) Query: 118 LIISGDLDPSKGLSV----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G LDP+ V A+ FQ GL+ +G++D T M+ P Sbjct: 3 LARFGYLDPALQNPSSGALISGDSVRRAIIDFQSFAGLNQTGILDPETSTWMSKPRCGVR 62 Query: 169 ------VDLRIRQLQVNLMRIK 184 R ++ + R + Sbjct: 63 DRVGAGSSARRKRYALQGARWR 84 >gi|77464778|ref|YP_354282.1| hypothetical protein RSP_1199 [Rhodobacter sphaeroides 2.4.1] gi|126463620|ref|YP_001044734.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] gi|77389196|gb|ABA80381.1| secreted conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] gi|126105284|gb|ABN77962.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] Length = 200 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 48/170 (28%) Query: 183 IKKLLEQ-KMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + VLV+I + +L E+G+ L V D T + + + + Sbjct: 56 LDWQPYFSNLRNGAVLVDITSRALHFWSEDGQTYLLFPTSVPLSDDLTRRGRTEVVQKVV 115 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 P W ++ + ++P++ Sbjct: 116 APPWRPTPAMKE--------RNPEW-------------------------------PDMV 136 Query: 301 DPG-KINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + Y +H T + R ++GC+ + N Sbjct: 137 PGGAPDNPLGTHALYLS--WTYYRIHGTHDTRKIG---RKSSNGCIGLYN 181 >gi|146339031|ref|YP_001204079.1| hypothetical protein BRADO1982 [Bradyrhizobium sp. ORS278] gi|146191837|emb|CAL75842.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 273 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 8/77 (10%) Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPT 362 + M I F++ H + + + + GCVR+ + L +L++ P Sbjct: 95 NSPM-PYAIFFHNGYAI--HGS---YAIDRLGGPASHGCVRLHPHHAARLFDLVLQEGPE 148 Query: 363 WSRYHIEEVVKTRKTTP 379 + + + + TP Sbjct: 149 HTTIEVTDAPRPDDPTP 165 >gi|83859898|ref|ZP_00953418.1| membrane-bound lytic murein transglycosylase, putative [Oceanicaulis alexandrii HTCC2633] gi|83852257|gb|EAP90111.1| membrane-bound lytic murein transglycosylase, putative [Oceanicaulis alexandrii HTCC2633] Length = 402 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 9/116 (7%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 D+ + + ++ K ++ + G WP+ + L Sbjct: 296 AFTNFDVIMRYNNSTAYALGVSYLAKRLSGLDALP--GDWPQDNPPITR-----SQAREL 348 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 ++ L G G+ F A +A+K FQ +GL P G EA+ Sbjct: 349 QQTLTDLGHDTR--GVDGIFGANSRAALKSFQAANGLTPDGYAGRLAYEAVMARAQ 402 >gi|298291066|ref|YP_003693005.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296927577|gb|ADH88386.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 222 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 10/146 (6%) Query: 224 VDRQTPILHSRINRIMFNPYWVI--PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 Q+ ++ + I I+ + PRSI+ + ++ R + + Sbjct: 78 AATQSALMPAGIAPIVVPLPEPVVIPRSIVAQINLSRQRMEVTVDGVPRYSWPISTARRG 137 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + V P+ + M I F H T + + R + Sbjct: 138 YRTPVGSYRPQRMYRRYFSRKYDNAPM-PYSIFFNGGYAI--HGTTD---LKRLGRPASH 191 Query: 342 GCVRVR--NIIDLDVWLLKDTPTWSR 365 GCVR+ N L + + +R Sbjct: 192 GCVRLHPSNAATLFALVKEYGAGNTR 217 >gi|114777595|ref|ZP_01452576.1| hypothetical protein SPV1_07806 [Mariprofundus ferrooxydans PV-1] gi|114552066|gb|EAU54583.1| hypothetical protein SPV1_07806 [Mariprofundus ferrooxydans PV-1] Length = 154 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDT 360 Y+H T L + GC+R+RN +L + + Sbjct: 110 IYIHGTHAEALAGTP---ASHGCIRMRNADIIELFAHVRINE 148 >gi|121997021|ref|YP_001001808.1| lytic murein transglycosylase [Halorhodospira halophila SL1] gi|121588426|gb|ABM61006.1| lytic murein transglycosylase [Halorhodospira halophila SL1] Length = 395 Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 8/78 (10%) Query: 99 IRPLHLG---NSSVSVQRLRER---LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 PL G + + LR+ L G + +A++ +Q GL Sbjct: 320 APPLRAGFPDDPAPRRSELRQAQEVLNELGF--DAGTPDGLLGPRTRAALRAYQQDQGLP 377 Query: 153 PSGMVDSSTLEAMNVPVD 170 G D LE + + Sbjct: 378 ADGYPDPKILERLQEKAE 395 >gi|154248430|ref|YP_001419388.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162515|gb|ABS69731.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 398 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 11/138 (7%) Query: 38 EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL 97 +++E F + + E+ +A G L Sbjct: 159 GLVDELQRQDW-VGFAIRY-NGPGYAKNQYDTKLAGAFRRWERWLAA----AGAGTANPL 212 Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L ++ ++++LI G + + AV FQ GL +G Sbjct: 213 PQHT-RLTKR--EIEAVQQQLIDLGY-PKIGLVDGKWGPDTTGAVSAFQAFEGLPTTGDY 268 Query: 158 DSSTLEAMNVPVDLRIRQ 175 D +T +A+ R Sbjct: 269 DDATRQALAE-ATPRAVS 285 >gi|297563702|ref|YP_003682676.1| peptidoglycan-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848150|gb|ADH70170.1| Peptidoglycan-binding domain 1 protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 376 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR-HGLDPSGM 156 RPL G+S V++ L G + + AV+ +Q G++ +G Sbjct: 131 AYRPLEPGSSGEDVRQFERALAELGY--SGFTVDDEYTWLTAEAVRRWQDDTEGMEVTGE 188 Query: 157 VDSSTL 162 V S + Sbjct: 189 VHPSQI 194 >gi|307317848|ref|ZP_07597286.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306896610|gb|EFN27358.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] Length = 405 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 10/137 (7%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE---TIAQTEKAIAFYQDILSR 91 V+ + F +R SD+P+ + E A+ + Sbjct: 136 VISDRQIAPVEVASEMLFQPSESRPQGPALSDVPLRPAIGEFNQSAVEVAMTDKRPSPVA 195 Query: 92 GGWPELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLSVAF-DAYVESAVKLFQMR 148 ++PIR L G SV+ L+ L G GL F +A++ FQ Sbjct: 196 SDEEKVPIRILITRRGTQ-ESVRDLQTLLNTLGY---DAGLPDGFSGPATAAAIEAFQRA 251 Query: 149 HGLDPSGMVDSSTLEAM 165 L G V +EA+ Sbjct: 252 EALPVEGKVTPELIEAV 268 >gi|325292881|ref|YP_004278745.1| Lysozyme [Agrobacterium sp. H13-3] gi|325060734|gb|ADY64425.1| Lysozyme [Agrobacterium sp. H13-3] Length = 307 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAMN 166 V+ +E L +G + A ++AV +Q H L G++ +T+ + Sbjct: 182 DPVVKEAQELLTTAGL--NPGAIDGWMGAKTKAAVIAYQKAHPHLIADGIIGPATIAQLR 239 Query: 167 VPVDL 171 Sbjct: 240 RDASA 244 >gi|260432642|ref|ZP_05786613.1| membrane-bound lytic murein transglycosylase B [Silicibacter lacuscaerulensis ITI-1157] gi|260416470|gb|EEX09729.1| membrane-bound lytic murein transglycosylase B [Silicibacter lacuscaerulensis ITI-1157] Length = 374 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 17/139 (12%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE--KAIAFYQD----------ILS 90 + A + P IA + I Y + + Sbjct: 237 VRGQPWGGEVGSPAASSGTPVAILQPQKPGPRIAVFRNFQVIKRYNNSDSYAIGVGHLAD 296 Query: 91 R--GGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 R GG P P G + + L+ RL +G ++G ++A+ +Q Sbjct: 297 RIAGGPPFRASFGPDENGLTLEDRKALQRRLTAAGY--DTQGADGVIGNNTKAAISAYQR 354 Query: 148 RHGLDPSGMVDSSTLEAMN 166 +GL +G S L A+ Sbjct: 355 ANGLPVTGEPSVSLLRALG 373 >gi|206972916|ref|ZP_03233838.1| cell wall biogenesis enzyme [Bacillus cereus AH1134] gi|206731800|gb|EDZ49000.1| cell wall biogenesis enzyme [Bacillus cereus AH1134] Length = 277 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + LG++ V L+ L G ++ FD K+FQ + L+P+G+V+ + Sbjct: 6 TIKLGSTGYYVTILQLNLSGLGVYYEKLAITGFFDEKTNKCTKIFQEKTKLNPNGIVEVN 65 Query: 161 TLEAMNVPVDLRIRQLQV 178 T +++ V L ++LQ Sbjct: 66 TWKSLFENVILIQKKLQT 83 >gi|89069939|ref|ZP_01157272.1| peptidoglycan binding domain protein [Oceanicola granulosus HTCC2516] gi|89044493|gb|EAR50621.1| peptidoglycan binding domain protein [Oceanicola granulosus HTCC2516] Length = 375 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 7/64 (10%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP R L + L+ERL +G +AV+ +Q+ HGL Sbjct: 308 GTWPR-QARVLETQER----RELQERLTSAGFCTRGA--DGLIGPDTVAAVRAYQLAHGL 360 Query: 152 DPSG 155 P G Sbjct: 361 RPDG 364 >gi|21264235|ref|NP_644735.1| lytic murein transglycosylase [Xanthomonas axonopodis pv. citri str. 306] gi|21110871|gb|AAM39253.1| lytic murein transglycosylase [Xanthomonas axonopodis pv. citri str. 306] Length = 425 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 NS+ + L++RL G G+ A ++ FQ L G +S L Sbjct: 363 PLNSTAQITELQQRLTDKGF--DVGGIDGVLGAQTRQGIRAFQRSQQLPQDGYASTSLLA 420 Query: 164 AMNVP 168 + P Sbjct: 421 RLRAP 425 >gi|158336019|ref|YP_001517193.1| OpcA protein [Acaryochloris marina MBIC11017] gi|158306260|gb|ABW27877.1| OpcA protein [Acaryochloris marina MBIC11017] Length = 450 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ L G + + + +E+A++ Q + GL +G +S TL + Sbjct: 62 QQLLAALGFY--TGPVDGIYGPRMEAALRSAQTKFGLAETGKPNSETLAKLRQ 112 >gi|156743429|ref|YP_001433558.1| ErfK/YbiS/YcfS/YnhG family protein [Roseiflexus castenholzii DSM 13941] gi|156234757|gb|ABU59540.1| ErfK/YbiS/YcfS/YnhG family protein [Roseiflexus castenholzii DSM 13941] Length = 397 Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 9/66 (13%) Query: 309 ASTKIEFYSRN------NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 + + +H T LF R + GCV + + WL + P Sbjct: 333 GKYWVVPNVPHVMYFYGGVALHGTYWHNLFGTGARP-SHGCVNL--PLKSAAWLYEWAPI 389 Query: 363 WSRYHI 368 + + Sbjct: 390 GTPVRV 395 >gi|317419770|emb|CBN81806.1| Matrix metalloproteinase-16 [Dicentrarchus labrax] Length = 591 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L + + ++SA+ Q R+GL+ +G +DS+T+E M P Sbjct: 29 LQRYGYLPSADPRMSVLRSARVMQSAIAAMQRRYGLNVTGTLDSNTIEWMKRP 81 >gi|284048918|ref|YP_003399257.1| 3D domain protein [Acidaminococcus fermentans DSM 20731] gi|283953139|gb|ADB47942.1| 3D domain protein [Acidaminococcus fermentans DSM 20731] Length = 194 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 3/102 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+ V+ ++ L + + + +SAVK FQ ++ +G V S Sbjct: 33 LGSKGQKVEEVQAMLSRLHYY--NGDIDGEYGTGTQSAVKKFQQKNRKPQTGEVTWSIYN 90 Query: 164 AMNVPVDLRIRQLQVN-LMRIKKLLEQKMGLRYVLVNIPAAS 204 M+ L + +M Q G+ V Sbjct: 91 LMSKQSGLSFGHFRKTWIMEATGYSPQDPGVTGVTYTGAMMR 132 >gi|296136686|ref|YP_003643928.1| Peptidoglycan-binding domain 1 protein [Thiomonas intermedia K12] gi|295796808|gb|ADG31598.1| Peptidoglycan-binding domain 1 protein [Thiomonas intermedia K12] Length = 343 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +E+L G P + +K FQ GL SG++D +T+ A N Sbjct: 293 QEKLNAQGF--PVGTPDGVMGPRTRAELKRFQNSRGLPESGVLDQATIAAFNQ 343 >gi|163733182|ref|ZP_02140626.1| transglycosylase, putative [Roseobacter litoralis Och 149] gi|161393717|gb|EDQ18042.1| transglycosylase, putative [Roseobacter litoralis Och 149] Length = 451 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + +++RL +G ++G+ A++ FQ GL P G S+ L+ + Sbjct: 399 KEIQQRLTRAGF--NTQGVDGRIGPNTIDAIRAFQRNRGLVPDGYASSALLQKLR 451 >gi|312876406|ref|ZP_07736390.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796764|gb|EFR13109.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 190 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 16/124 (12%) Query: 258 LLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + Y+ I GK V ++ G+ + Sbjct: 39 SIDDSRLYVFKEGILYKSYPISPGKPSTPTPVGTFKIISKDYW-----GEG--FGGRWMG 91 Query: 315 FYSRNN-TYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEV 371 R +H T + GCVR+ +++ +L ++ T + Sbjct: 92 LNVRYGKYGIHGTIYESYIGA---HVSKGCVRMLNKDVKELFSYIPIGTTVIVSEGLYGE 148 Query: 372 VKTR 375 + Sbjct: 149 FRNG 152 >gi|288920824|ref|ZP_06415122.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] gi|288347783|gb|EFC82062.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] Length = 257 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 15/68 (22%) Query: 300 QDPGKINAMASTKIEFYS-----------RNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H T P L + + GC+R+RN Sbjct: 181 RPADPNGPWGPFAFGLSGFSDVITQFNGADGIIGLHGTNRPDLVGSD---VSMGCIRLRN 237 Query: 349 IIDLDVWL 356 DL + Sbjct: 238 -DDLLRLV 244 >gi|120599845|ref|YP_964419.1| peptidoglycan binding domain-containing protein [Shewanella sp. W3-18-1] gi|120559938|gb|ABM25865.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. W3-18-1] Length = 559 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 + FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N Sbjct: 502 RNARRVTHFDLKLENDLKAFQSQHGLKADGIAGNQTLVRLNLYLSEQGPRLTDN 555 >gi|146292219|ref|YP_001182643.1| peptidoglycan binding domain-containing protein [Shewanella putrefaciens CN-32] gi|145563909|gb|ABP74844.1| Peptidoglycan-binding domain 1 protein [Shewanella putrefaciens CN-32] gi|319425519|gb|ADV53593.1| type II general secretion pathway protein A, GspA [Shewanella putrefaciens 200] Length = 559 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 + FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N Sbjct: 502 RNARRVTHFDLKLENDLKAFQSQHGLKADGIAGNQTLVRLNLYLSEQGPRLTDN 555 >gi|297182496|gb|ADI18658.1| hypothetical protein [uncultured Acidobacteria bacterium HF4000_26D02] Length = 349 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 4/131 (3%) Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF- 282 R + LHS + + + P S+ + + + P + + + Sbjct: 42 PGRASARLHSTASLRIPSLLQNGPPSLTRPTGLPAAARSPVTASEGWWRIPGSNRRPPDC 101 Query: 283 -VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + R PG + + + + + P+ +F+ + ++ Sbjct: 102 KPGALPAELIPHHARPRRCVPGTSS--GNRWPRLAAPLSVPLSHGPQRGVFDASLGEGSA 159 Query: 342 GCVRVRNIIDL 352 G +R L Sbjct: 160 GGIRALGPFRL 170 >gi|254561960|ref|YP_003069055.1| hypothetical protein METDI3562 [Methylobacterium extorquens DM4] gi|254269238|emb|CAX25204.1| Conserved hypothetical protein; putative exported protein, putative ErfK/YbiS/YcfS/YnhG domain [Methylobacterium extorquens DM4] Length = 211 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 12/71 (16%) Query: 308 MASTKIEFYSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLK 358 + + + +H T + R + GC+R+ RN L + + Sbjct: 74 FSREWDNAPMPHAIFFTQVGHAIHGTTHTR---RLGRAASHGCIRLSQRNAATLFTLVKQ 130 Query: 359 DTPTWSRYHIE 369 +R IE Sbjct: 131 QKMANTRVVIE 141 >gi|15965950|ref|NP_386303.1| putative transglycosylase transmembrane protein [Sinorhizobium meliloti 1021] gi|307308261|ref|ZP_07587970.1| lytic murein transglycosylase [Sinorhizobium meliloti BL225C] gi|15075219|emb|CAC46776.1| Membrane-bound lytic murein transglycosylase B [Sinorhizobium meliloti 1021] gi|306901259|gb|EFN31865.1| lytic murein transglycosylase [Sinorhizobium meliloti BL225C] Length = 405 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G ++ L+ RL G + + +A++ Q++ G+ Sbjct: 335 GAPPYQQGNPEPGLGDAEMKALQTRLQALGH--DVGKIDGILGSGTRAALQKEQLKLGIP 392 Query: 153 PSGMVDSSTLEAM 165 G LEA+ Sbjct: 393 ADGWATPGLLEAL 405 >gi|307319728|ref|ZP_07599153.1| lytic murein transglycosylase [Sinorhizobium meliloti AK83] gi|306894659|gb|EFN25420.1| lytic murein transglycosylase [Sinorhizobium meliloti AK83] Length = 405 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G ++ L+ RL G + + +A++ Q++ G+ Sbjct: 335 GAPPYQQGNPEPGLGDAEMKALQTRLQALGH--DVGKIDGILGSGTRAALQKEQLKLGIP 392 Query: 153 PSGMVDSSTLEAM 165 G LEA+ Sbjct: 393 ADGWATPGLLEAL 405 >gi|291568104|dbj|BAI90376.1| peptidoglycan-binding domain 1 protein [Arthrospira platensis NIES-39] Length = 606 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +++ RLI G L P + F +A + FQ + SG++DS T + + +R Sbjct: 114 QIQTRLIDLGLLAP--PVDGIFGPLSRAAFRRFQELINISESGVLDSETAQKLIDTTTIR 171 Query: 173 IRQLQVN 179 +++ Sbjct: 172 RENMRLQ 178 Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +++ RLI G L+P + F +A + FQ + SG++ S T + + +R Sbjct: 27 QIQTRLIDLGLLNP--PVDGIFGPLSTAAFRRFQELMNISESGILASETAQKLLETTTMR 84 Query: 173 IRQLQV 178 +++ Sbjct: 85 PPNMRL 90 >gi|152999733|ref|YP_001365414.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS185] gi|151364351|gb|ABS07351.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS185] Length = 557 Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N +R Sbjct: 506 NQFDVQLENDLKSFQSQHGLKADGIAGNQTLVRLNLYLSQQGPRLTDNGVR 556 >gi|255010410|ref|ZP_05282536.1| putative phage-related protein [Bacteroides fragilis 3_1_12] gi|313148212|ref|ZP_07810405.1| peptidoglycan-binding domain 1 protein [Bacteroides fragilis 3_1_12] gi|313136979|gb|EFR54339.1| peptidoglycan-binding domain 1 protein [Bacteroides fragilis 3_1_12] Length = 264 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + L L + L +G S S F ++ +V FQ + LD G+V Sbjct: 2 KTIKLDYEGEEALLLCQGLKRNGY---SVNESRIFTQEMKESVVDFQRKSQLDADGIVGY 58 Query: 160 STLEAM---NVPVDLRIR 174 T E++ P R+ Sbjct: 59 RTWESLFFTGRPTTERLT 76 >gi|126733793|ref|ZP_01749540.1| hypothetical protein RCCS2_06539 [Roseobacter sp. CCS2] gi|126716659|gb|EBA13523.1| hypothetical protein RCCS2_06539 [Roseobacter sp. CCS2] Length = 250 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 42/170 (24%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + G + V+ A L V R V VGR R + + + + Sbjct: 55 RRSGIYNGEAGPNTLDVDPYAKFLYHVREDGTTTRYPVGVGRAGR-SIRGTTTMKFMRQW 113 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +++++ + + F Sbjct: 114 PGWTPTQNMLRTEP----------------EVY-------------------GPFRAGIP 138 Query: 302 PGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G + + + + SR+ Y +H T + N ++GC+R+ N Sbjct: 139 GGLRSPLGARALYLFRGSRDTHYRIHGTNDLESIGNSG---SAGCIRMFN 185 >gi|254413372|ref|ZP_05027143.1| opcA protein [Microcoleus chthonoplastes PCC 7420] gi|196179992|gb|EDX74985.1| opcA protein [Microcoleus chthonoplastes PCC 7420] Length = 455 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-L 176 L G + + +A+K Q +GL +G D T E + + R +Q + Sbjct: 64 LSALGYYS--GPIDGIIGPRMFAAIKAAQKTYGLPRTGKADDKTKEKLREEYNERHQQEV 121 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAA 203 N ++ + + I AA Sbjct: 122 NGNGQTRRQTYSADIEGSGIADAIAAA 148 >gi|163758707|ref|ZP_02165794.1| hypothetical protein HPDFL43_14827 [Hoeflea phototrophica DFL-43] gi|162283997|gb|EDQ34281.1| hypothetical protein HPDFL43_14827 [Hoeflea phototrophica DFL-43] Length = 319 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAMNV 167 LI G L + + V SAV+ FQ H L G++ +TL+ + Sbjct: 196 LIKLGYLADAARGDM---KRVRSAVRRFQEAHPQLSNDGVMGRATLDQLQR 243 >gi|307942634|ref|ZP_07657982.1| protein ErfK/srfK [Roseibium sp. TrichSKD4] gi|307774273|gb|EFO33486.1| protein ErfK/srfK [Roseibium sp. TrichSKD4] Length = 53 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 6/57 (10%) Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETS 341 + + G N + + + + Y +H T E +S Sbjct: 2 IARERKKGRKLPAYMPGGPKNPLGARALYLGN--TIYRIHGTNEDWSIGQ---AVSS 53 >gi|237809403|ref|YP_002893843.1| Peptidoglycan-binding domain 1 protein [Tolumonas auensis DSM 9187] gi|237501664|gb|ACQ94257.1| Peptidoglycan-binding domain 1 protein [Tolumonas auensis DSM 9187] Length = 542 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ L + + L +S FDA + V+ FQ + GL G+ TL + + Sbjct: 453 ADVRWLEAAVSQALRLPVRNKVS-RFDAQLTDKVRQFQKQEGLVEDGVAGEQTLLRLVIR 511 Query: 169 VDLRIRQL 176 + +L Sbjct: 512 SQKAVPRL 519 >gi|163852687|ref|YP_001640730.1| lytic murein transglycosylase [Methylobacterium extorquens PA1] gi|163664292|gb|ABY31659.1| lytic murein transglycosylase [Methylobacterium extorquens PA1] Length = 393 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 WP R ++RL+ L G + AV+ +Q+R Sbjct: 320 ALAAPWPNGAARL-----DGPGLKRLQAGLAAKGLYAGE--QDGRAGPKLREAVRQYQIR 372 Query: 149 HGLDPSGMVDSSTLEAMNVPV 169 GL G + LE + Sbjct: 373 EGLPADGYARPALLERLEGRP 393 >gi|163849538|ref|YP_001637581.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163661143|gb|ABY28510.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 368 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 11/107 (10%), Positives = 28/107 (26%), Gaps = 19/107 (17%) Query: 289 NSPEPPNFIFRQDPGKINAM-------ASTKIEFYSRNNTY-------MHDTPEPILFNN 334 + ++ G + + + + +H + Sbjct: 232 WAVSTGRAPYKTPAGTFRPFRLEKEHYSREWDDAPMPYSIFFTAAGHAIHASNATRQLG- 290 Query: 335 VVRFETSGCVRVR--NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 R + GCVR+ + L + + P ++ I +T Sbjct: 291 --RPASHGCVRLAPSHAAALFTLVRAEGPGATKVTITNGASAGRTAR 335 >gi|91793495|ref|YP_563146.1| lytic murein transglycosylase [Shewanella denitrificans OS217] gi|91715497|gb|ABE55423.1| Lytic murein transglycosylase [Shewanella denitrificans OS217] Length = 437 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L+E+L G + ++ FQ GL G ST A+ +P Sbjct: 380 IKALQEKLNQLGF--DVGEPDGVLGRNSMAGLQAFQRSKGLIADGYPGQSTFNALGLP 435 >gi|259418047|ref|ZP_05741966.1| lytic murein transglycosylase [Silicibacter sp. TrichCH4B] gi|259346953|gb|EEW58767.1| lytic murein transglycosylase [Silicibacter sp. TrichCH4B] Length = 455 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 13/68 (19%) Query: 91 RGGWPELPIRPLHLGNSS---VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 +G WP G+ + + L++RL +G + G+ +AV+ +Q Sbjct: 387 KGSWPR--------GDRALTFSERKELQQRLTRAGF--STDGVDGRIGPNTVAAVRAYQS 436 Query: 148 RHGLDPSG 155 GL P G Sbjct: 437 AKGLMPDG 444 >gi|53803821|ref|YP_114311.1| hypothetical protein MCA1874 [Methylococcus capsulatus str. Bath] gi|53757582|gb|AAU91873.1| conserved domain protein [Methylococcus capsulatus str. Bath] Length = 241 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 59/217 (27%), Gaps = 54/217 (24%) Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G + R + + + + ++ +++P LE +E GKV Sbjct: 48 GRIARHDWARRGPSKPARPAKPGH-----RNMTAPENVADFLHISVPRQRLELIEAGKVV 102 Query: 215 LRSTVIVGRVDRQ-------TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 V + TP R+ + +P + L Sbjct: 103 AHYRVSTAKNGVGEKRGSECTPRGWHRVRAKI---GAGLPAGAVLVGRRPTGEIYTPLLA 159 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN------- 320 + G++ + + W + + F +R Sbjct: 160 ARH------PGRDWILSRILW-------------------LGGLQPGF-NRYGEVDTAWR 193 Query: 321 -TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDV 354 Y+H +P+ ++ GC+R+ + DL Sbjct: 194 YIYIHGSPDD---GVDGTPQSHGCIRLTSADVIDLFD 227 >gi|149921154|ref|ZP_01909612.1| hypothetical protein PPSIR1_24989 [Plesiocystis pacifica SIR-1] gi|149818041|gb|EDM77500.1| hypothetical protein PPSIR1_24989 [Plesiocystis pacifica SIR-1] Length = 335 Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 ++ A++ AVK +Q RHGL GMV + T Sbjct: 29 ATGTSVTGAWNDETVEAVKQWQGRHGLKADGMVGAGTYA 67 >gi|212635639|ref|YP_002312164.1| membrane-bound lytic transglycolase-like protein [Shewanella piezotolerans WP3] gi|212557123|gb|ACJ29577.1| Membrane-bound lytic transglycolase-like protein [Shewanella piezotolerans WP3] Length = 396 Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ L+ +L G + ++ FQ +GL G + +T +A+ V Sbjct: 339 ARVKALQSQLNALGF--DVGKPDGILGSKSLKGLQAFQKGNGLVADGYPNEATFKALGV 395 >gi|317052071|ref|YP_004113187.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurispirillum indicum S5] gi|316947155|gb|ADU66631.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurispirillum indicum S5] Length = 350 Score = 42.3 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 16/126 (12%) Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NSPEPPNFIFRQDPGKI-- 305 + + M + Y + + + K + ++W + + + G+ Sbjct: 231 RDECMPREQGGNCYFTEPGEYAVR--WKIYEPDGIEWCIPPSMEKEERYAADIAAGQRCF 288 Query: 306 -NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 + + + H T + +SGC+R N D+ L K Sbjct: 289 PGVLGNFALNIGKTYAI--HGTRNLDSIGQRM---SSGCIRTHN--DVAEQLYKLMREGD 341 Query: 365 RYHIEE 370 R I+E Sbjct: 342 RVVIQE 347 >gi|240140021|ref|YP_002964498.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens AM1] gi|240009995|gb|ACS41221.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens AM1] Length = 393 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 WP R ++RL+ L G + AV+ +Q+R Sbjct: 320 ALAAPWPNGAARL-----DGPGLKRLQAGLAAKGLY--GGEQDGRAGPKLREAVRQYQIR 372 Query: 149 HGLDPSGMVDSSTLEAMNVPV 169 GL G + LE + Sbjct: 373 EGLPADGYARPALLERLEGRP 393 >gi|148927471|ref|ZP_01810974.1| Peptidoglycan-binding domain 1 protein [candidate division TM7 genomosp. GTL1] gi|147887195|gb|EDK72662.1| Peptidoglycan-binding domain 1 protein [candidate division TM7 genomosp. GTL1] Length = 194 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ RL+ S L + + F + + FQ + + G+V T Sbjct: 110 GSTGTCVKYIQ-RLLNSFPLAGTLAVDGIFGSKTRGTTRSFQSKEHIRVDGIVGPQTWRH 168 Query: 165 MNVP 168 + Sbjct: 169 LCAS 172 >gi|110632387|ref|YP_672595.1| peptidoglycan binding domain-containing protein [Mesorhizobium sp. BNC1] gi|110283371|gb|ABG61430.1| Peptidoglycan-binding domain 1 [Chelativorans sp. BNC1] Length = 1261 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ ++ L G SA++ FQ ++GL+ +G +D + A+ Sbjct: 1200 AISNVQLILTRIGY--DPGPADGVMGEKTRSAIRSFQKQNGLEETGEIDEPLVRAL 1253 >gi|154250914|ref|YP_001411738.1| peptidoglycan-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154154864|gb|ABS62081.1| Peptidoglycan-binding domain 1 protein [Parvibaculum lavamentivorans DS-1] Length = 1012 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 24/104 (23%) Query: 86 QDILSRGGWPELPIRPLHLGNSS----------------------VSVQRLRERLIISGD 123 + ++ G W P+ G+ V R++E L G Sbjct: 908 RAKIASGTWRAKKPEPVANGDMGTLKRWDISSMEGATSASAPVTRADVARVQELLNRLGY 967 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + A+ +Q+ GL+ +G TL ++ Sbjct: 968 --NAGSPDGLMGPRTRDAILEYQLTEGLETTGTATRETLTSLEA 1009 >gi|119385237|ref|YP_916293.1| lytic murein transglycosylase [Paracoccus denitrificans PD1222] gi|119375004|gb|ABL70597.1| lytic murein transglycosylase [Paracoccus denitrificans PD1222] Length = 417 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 15/95 (15%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGN---SSVSVQRLRERLIISGDLDPSKGLS 131 +A +AIA + I +G WP G+ S+ ++ L+ G + G+ Sbjct: 334 VAYLGEAIAGRRGI--QGNWPR--------GDRTLSNNEKAEIQRLLMARGF--DTGGVD 381 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 A++ FQ G+ P G D+ L + Sbjct: 382 GKLGGQSTEAIRAFQRSRGVTPDGYADTRLLAMLR 416 >gi|24372876|ref|NP_716918.1| general secretion pathway protein a [Shewanella oneidensis MR-1] gi|24346991|gb|AAN54363.1|AE015573_10 general secretion pathway protein a [Shewanella oneidensis MR-1] Length = 554 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N Sbjct: 505 FDLKLENDLKAFQSQHGLKADGIAGNQTLVRLNLYLSDQGPRLTDN 550 >gi|113971231|ref|YP_735024.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-4] gi|113885915|gb|ABI39967.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-4] Length = 562 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N Sbjct: 513 FDLKLENDLKAFQSQHGLKADGIAGNQTLVRLNLYLSDQGPRLTDN 558 >gi|148273399|ref|YP_001222960.1| hypothetical protein CMM_2215 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831329|emb|CAN02285.1| hypothetical protein with peptidoglycan binding domain [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 148 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +GN S +V RL++ L D + F +++A++ Q G+ G+ S Sbjct: 69 LEIGNQSPAVTRLQQELKDGCDSAPQDIAVDGQFGRAIKAALQSAQSTLGITADGIYGSQ 128 Query: 161 T 161 T Sbjct: 129 T 129 >gi|114048469|ref|YP_739019.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-7] gi|113889911|gb|ABI43962.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-7] Length = 562 Score = 42.3 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N Sbjct: 513 FDLKLENDLKAFQSQHGLKADGIAGNQTLVRLNLYLSDQGPRLTDN 558 >gi|237735561|ref|ZP_04566042.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381306|gb|EEO31397.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 44 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F + A+ +FQ GL G+V S+T + + Sbjct: 3 VDGDFGKKTKEAIIVFQRNRGLVQDGVVGSNTWDWL 38 >gi|254284845|ref|ZP_04959812.1| VgrG protein [Vibrio cholerae AM-19226] gi|150425630|gb|EDN17406.1| VgrG protein [Vibrio cholerae AM-19226] Length = 108 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM----RHGLDPS 154 GN S V+ L+E LI G G F + ++A++ FQ H PS Sbjct: 32 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 91 Query: 155 GMVDSSTLEAMNV 167 + + T+ + V Sbjct: 92 YSIGAVTVLSAKV 104 >gi|254500718|ref|ZP_05112869.1| N-acetylmuramoyl-L-alanine amidase domain protein [Labrenzia alexandrii DFL-11] gi|222436789|gb|EEE43468.1| N-acetylmuramoyl-L-alanine amidase domain protein [Labrenzia alexandrii DFL-11] Length = 263 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLE 163 G V+ L+ L + G ++ FD V FQ G+VD+ST+E Sbjct: 194 GEEGQPVEALQSMLALYGY---EVDINGRFDRRTSEVVTAFQRHFRPEKVDGVVDASTIE 250 >gi|15223067|ref|NP_177174.1| MMP (MATRIX METALLOPROTEINASE); metalloendopeptidase/ metallopeptidase [Arabidopsis thaliana] gi|2194124|gb|AAB61099.1| Similar to Glycine metalloendoproteinase (gb|U63725) [Arabidopsis thaliana] gi|332196906|gb|AEE35027.1| matrix metalloproteinase [Arabidopsis thaliana] Length = 378 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + + R+++ G + S + FD +++AV+L+Q L+ +G +D+ T+ Sbjct: 53 GQNVDGLYRIKKYFQRFGYIPETFSGNFTDDFDDILKAAVELYQTNFNLNVTGELDALTI 112 Query: 163 EAMNVP 168 + + +P Sbjct: 113 QHIVIP 118 >gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1082 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 10/82 (12%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN- 166 S ++ ++ L G + + + E+A++ Q +GL +G D +TL+ + Sbjct: 196 SDNIIAIQTLLANGGFY--NGSIDNIWGVETETAIQDAQNAYGLPVTGQPDRATLQQLVQ 253 Query: 167 -------VPVDLRIRQLQVNLM 181 P + RI + ++L Sbjct: 254 STNNINLTPENQRIAVIAIDLN 275 >gi|189520793|ref|XP_699803.3| PREDICTED: matrix metalloproteinase-24 [Danio rerio] Length = 608 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 111 VQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L+ L G L P + + ++SAV Q +G+ +G++D +T+E M P Sbjct: 40 IVELQTWLKNYGYLLPHDIRTSDLRSEKAMQSAVAAMQRFYGIPVTGILDQTTIEWMRKP 99 >gi|110741618|dbj|BAE98757.1| predicted GPI-anchored protein [Arabidopsis thaliana] Length = 378 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + + R+++ G + S + FD +++AV+L+Q L+ +G +D+ T+ Sbjct: 53 GQNVDGLYRIKKYFQRFGYIPETFSGNFTDDFDDILKAAVELYQTNFNLNVTGELDALTI 112 Query: 163 EAMNVP 168 + + +P Sbjct: 113 QHIVIP 118 >gi|73669458|ref|YP_305473.1| hypothetical protein Mbar_A1955 [Methanosarcina barkeri str. Fusaro] gi|72396620|gb|AAZ70893.1| hypothetical protein Mbar_A1955 [Methanosarcina barkeri str. Fusaro] Length = 1282 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 P E A T ++++ Q ++ P G + V+ + L+ G LD + Sbjct: 917 PTKDTEISASTSVSLSYLQ--VAAESDPARSQGKTTPGATDS-VKIVEAALVEEGYLDDA 973 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLD---PSGMVDSS 160 A+ + +A K +Q G G+ Sbjct: 974 YAYDGAYGSATINAYKQWQESLGSPAKYCDGIPGKK 1009 >gi|291486076|dbj|BAI87151.1| hypothetical protein BSNT_05362 [Bacillus subtilis subsp. natto BEST195] Length = 480 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL + ++ V+ + L G F ++ AV FQ ++ L+ +G++D Sbjct: 389 KEPLKVDMNNEDVKHAQVLLK--GLSFDPGREDGYFSKDMKKAVMAFQDQNKLNKTGVID 446 Query: 159 SSTLEAMNVPVDLR 172 + T E +N ++ + Sbjct: 447 TRTAETLNRQIEKK 460 >gi|110833878|ref|YP_692737.1| hypothetical protein ABO_1017 [Alcanivorax borkumensis SK2] gi|110646989|emb|CAL16465.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 122 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y+H TP+ + GC+R+RN Sbjct: 78 IYIHGTPDYEPMGTP---ASHGCIRMRN 102 >gi|297838805|ref|XP_002887284.1| hypothetical protein ARALYDRAFT_476141 [Arabidopsis lyrata subsp. lyrata] gi|297333125|gb|EFH63543.1| hypothetical protein ARALYDRAFT_476141 [Arabidopsis lyrata subsp. lyrata] Length = 378 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + + R+++ G + S + FD +++AV+L+Q L+ +G +D+ T+ Sbjct: 53 GQNVEGLYRIKKYFQRFGYIPETFSGNFTDDFDDILKTAVELYQRNFKLNVTGELDAMTI 112 Query: 163 EAMNVP 168 + + +P Sbjct: 113 KHIVIP 118 >gi|268609047|ref|ZP_06142774.1| spore cortex-lytic enzyme, pre-pro-form [Ruminococcus flavefaciens FD-1] Length = 169 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 21/46 (45%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 +++ AV+ FQ +GL +G DS T + + I +L Sbjct: 36 GQYNSETAEAVRKFQQIYGLPQTGETDSDTWDMIVSVYRDSIDELP 81 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 7/68 (10%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVA-----FDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ V ++ L SG + FD+ AV+ Q + GL SG V+ Sbjct: 97 GDHGQLVYIIQAML--SGLCSAYDNMPDVAVCGDFDSETAEAVRAVQKKTGLPESGEVNC 154 Query: 160 STLEAMNV 167 T + Sbjct: 155 HTWNMLVK 162 >gi|160898818|ref|YP_001564400.1| peptidoglycan-binding domain-containing protein [Delftia acidovorans SPH-1] gi|160364402|gb|ABX36015.1| Peptidoglycan-binding domain 1 protein [Delftia acidovorans SPH-1] Length = 586 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 51/173 (29%), Gaps = 29/173 (16%) Query: 80 KAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQ-----------------RLRERLIIS 121 + + I G W LP + L L + Q +R+ LI Sbjct: 282 RTLVELGMIELLGKWSRLPYWQCLTLDQTHPDFQRQLRDWYEEGEAGIHQELVRQSLISK 341 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD-----SSTLEAMNVPVDLRIRQL 176 G L P A + A+ FQ G+ SG+VD + + + V D I ++ Sbjct: 342 GYLPPDAPAFTAGNPQWREAIGRFQADSGMVVSGVVDFNTYERALRDFVAVGADGHITRI 401 Query: 177 QVNLMRIKKLLEQK------MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 N + G P L+ R++ G Sbjct: 402 GWNTKSAAPVTTASENVAVGTGDYRYGAPAPDRKLDLWVENITPTRTSFETGE 454 >gi|185134733|ref|NP_001117842.1| matrix metalloproteinase-9 [Oncorhynchus mykiss] gi|20160306|emb|CAC85923.1| matrix metalloproteinase 9 [Oncorhynchus mykiss] Length = 675 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 9/118 (7%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L + + L G +D A A+ Q + GL+ +G Sbjct: 29 TFPGDVLK-NMTDTELAN--SYLQRFGYMDVQHRSGFQSMASTSKALMRMQRQMGLEETG 85 Query: 156 MVDSSTLEAMNVP--VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN-IPAASLEAVEN 210 +D ST+ AM P +R Q +K + Y ++N P +++ Sbjct: 86 TLDKSTVAAMKAPRCGVPDVRSYQTFQGDLKW---DHHDITYRILNYSPDMGASLIDD 140 >gi|16080577|ref|NP_391404.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. subtilis str. 168] gi|221311474|ref|ZP_03593321.1| hypothetical protein Bsubs1_19066 [Bacillus subtilis subsp. subtilis str. 168] gi|221315801|ref|ZP_03597606.1| hypothetical protein BsubsN3_18982 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320716|ref|ZP_03602010.1| hypothetical protein BsubsJ_18945 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325001|ref|ZP_03606295.1| hypothetical protein BsubsS_19101 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313070|ref|YP_004205357.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis BSn5] gi|81669165|sp|O35002|CTPB_BACSU RecName: Full=Carboxy-terminal processing protease CtpB; Short=C-terminal processing protease; Flags: Precursor gi|2618834|gb|AAC67263.1| putative protease [Bacillus subtilis] gi|2636050|emb|CAB15541.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. subtilis str. 168] gi|148356709|dbj|BAF63027.1| serine protease [Bacillus subtilis subsp. natto] gi|320019344|gb|ADV94330.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis BSn5] Length = 480 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL + ++ V+ + L G F ++ AV FQ ++ L+ +G++D Sbjct: 389 KEPLKVDMNNEDVKHAQVLLK--GLSFDPGREDGYFSKDMKKAVMAFQDQNKLNKTGVID 446 Query: 159 SSTLEAMNVPVDLR 172 + T E +N ++ + Sbjct: 447 TRTAETLNQQIEKK 460 >gi|170749757|ref|YP_001756017.1| lytic murein transglycosylase [Methylobacterium radiotolerans JCM 2831] gi|170656279|gb|ACB25334.1| lytic murein transglycosylase [Methylobacterium radiotolerans JCM 2831] Length = 430 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 L+ RL G + G+ +A++ FQ GL P G D++ L+ + Sbjct: 377 LQTRLTERGF--ATGGVDGKIGPKTRAALRAFQGSVGLPPDGYADAALLDRVRAAP 430 >gi|110678455|ref|YP_681462.1| peptidoglycan binding domain-containing protein [Roseobacter denitrificans OCh 114] gi|109454571|gb|ABG30776.1| peptidoglycan binding domain protein [Roseobacter denitrificans OCh 114] Length = 377 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + L+ RL SG ++G ++A++ +Q GL +G+ L+ + Sbjct: 321 KDDRI-ALQIRLTASGF--DTQGADGVIGPNSQAAIRAYQASQGLPVTGVPSPQLLDRLQ 377 >gi|86139891|ref|ZP_01058457.1| hypothetical protein MED193_12698 [Roseobacter sp. MED193] gi|85823520|gb|EAQ43729.1| hypothetical protein MED193_12698 [Roseobacter sp. MED193] Length = 431 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 9/86 (10%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + I GW L + + ++ L G + + +A++ F Sbjct: 355 EAIAGACGWSTLDLSR-------DDYRAIQTMLNAGGF--DAGTPDGVWGNGSRNAMRTF 405 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDL 171 Q ++GL P+G D +TLEA+ + Sbjct: 406 QEQNGLAPTGAPDRATLEALGIQASD 431 >gi|307946177|ref|ZP_07661512.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] gi|307769841|gb|EFO29067.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] Length = 255 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + ++ L G + A++ F++ GL +G ++ + Sbjct: 189 RDARLANIQRLLADLGYGPLAA--DGVMGENTSIAIRRFELDRGLPLTGEPSPDVIQRLE 246 Query: 167 VPVDLRI 173 RI Sbjct: 247 KVSGQRI 253 >gi|296444538|ref|ZP_06886502.1| lytic murein transglycosylase [Methylosinus trichosporium OB3b] gi|296257806|gb|EFH04869.1| lytic murein transglycosylase [Methylosinus trichosporium OB3b] Length = 392 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 7/76 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +G WP G S + ++ L G A+ FQ R G Sbjct: 322 QGAWPTDD-----PGLSRAERREVQALLSRHGY--EVGEPDGVIGTRTMQAIADFQGRAG 374 Query: 151 LDPSGMVDSSTLEAMN 166 + G TL A+ Sbjct: 375 MRADGRAGRKTLNALR 390 >gi|312114874|ref|YP_004012470.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220003|gb|ADP71371.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 139 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 5/48 (10%) Query: 314 EFYSRNNTYMHDTPEPIL---FNNVVRFETSGCVRV--RNIIDLDVWL 356 + + H N+ R + GC+R+ + +L + Sbjct: 80 NSPMPYSIFFHGGYAIHGSYDIGNLGRPVSHGCIRLHPEDARELYGLV 127 >gi|150396530|ref|YP_001326997.1| peptidoglycan binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150028045|gb|ABR60162.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium medicae WSM419] Length = 307 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 3/69 (4%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTL 162 V+ +E L G + A+ +Q H L+ G++ +TL Sbjct: 178 PRKPDALVKEAQEILTSKGF--NPGAIDGWMGEKTRDAIIAYQKAHPHLEADGILGPATL 235 Query: 163 EAMNVPVDL 171 + Sbjct: 236 SQLRRDAKA 244 >gi|302551078|ref|ZP_07303420.1| peptidoglycan-binding membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302468696|gb|EFL31789.1| peptidoglycan-binding membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 319 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 4/74 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L LG+ V L+ + + +D +E AV+ +Q G+ G+ Sbjct: 248 TLRLGDRGPEVTELQL--RLRQLSLYVEDDDGTYDEGLEDAVRTYQWSRGIQDDDLGVYG 305 Query: 159 SSTLEAMNVPVDLR 172 T + Sbjct: 306 RGTRTRLESETKEP 319 >gi|47215834|emb|CAG00689.1| unnamed protein product [Tetraodon nigroviridis] Length = 618 Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + + SAV Q +GL+ +G +D T+ AM P D Sbjct: 4 LRMYGYLPQASRQMSTMRSAQILSSAVSDMQRFYGLEVTGKMDPETISAMKRPRCGVPDK 63 Query: 172 RIRQLQVNLMRIK 184 Q++ N+ R + Sbjct: 64 FGGQIKTNVRRKR 76 >gi|307138337|ref|ZP_07497693.1| hypothetical protein EcolH7_09430 [Escherichia coli H736] gi|331642276|ref|ZP_08343411.1| putative LysM domain protein [Escherichia coli H736] gi|331039074|gb|EGI11294.1| putative LysM domain protein [Escherichia coli H736] Length = 177 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 36/125 (28%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + G Sbjct: 148 TPTAGIRQRSL-----------------------------------ERGIKLPPVVPAGP 172 Query: 305 INAMA 309 N + Sbjct: 173 NNPLG 177 >gi|90418209|ref|ZP_01226121.1| putative N-acetylmuramoyl-L-alanine amidase [Aurantimonas manganoxydans SI85-9A1] gi|90337881|gb|EAS51532.1| putative N-acetylmuramoyl-L-alanine amidase [Aurantimonas manganoxydans SI85-9A1] Length = 262 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 19/112 (16%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPE---------LPIRPLH------LGNSSVSVQ 112 PI + +A ++ A A D + W + + PL LG+ V Sbjct: 130 PIRPEFVLAHSDVAPARKSDPGEKFPWLQLFSAGIGHAVDPAPLRGGRYFSLGDRGEPVA 189 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSSTLE 163 + L G FD A FQ + G+ D+ST+E Sbjct: 190 AYQSLLAAYGY---GVPCDGTFDDTTRQATVAFQRHFRQERVDGIADASTIE 238 >gi|164687240|ref|ZP_02211268.1| hypothetical protein CLOBAR_00881 [Clostridium bartlettii DSM 16795] gi|164603664|gb|EDQ97129.1| hypothetical protein CLOBAR_00881 [Clostridium bartlettii DSM 16795] Length = 370 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ + V++++++L + SK S +K FQ ++GL +G VD T Sbjct: 150 LKKGSMGLKVRKVQQKLGM------SKTYKAIVGPVTISKIKAFQKKNGLKQTGEVDYKT 203 Query: 162 LEAMNVPVDL 171 + M + D Sbjct: 204 WKKMGLSDDD 213 >gi|121592469|ref|YP_984365.1| peptidoglycan-binding domain-containing protein [Acidovorax sp. JS42] gi|120604549|gb|ABM40289.1| Peptidoglycan-binding domain 1 protein [Acidovorax sp. JS42] Length = 346 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ +E L G + S A++ FQ GL +G +D++T A++ Sbjct: 292 VREAQESLNAMGYNVGTPDGSA--GPKTAKALREFQQSQGLPVTGRLDTATAGALSR 346 >gi|163852214|ref|YP_001640257.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163663819|gb|ABY31186.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 214 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 12/71 (16%) Query: 308 MASTKIEFYSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLK 358 + + + +H T + R + GCVR+ RN L + + Sbjct: 77 FSREWDNAPMPHAIFFTQVGHAIHGTTHTR---RLGRAASHGCVRLSQRNAATLFTLVKQ 133 Query: 359 DTPTWSRYHIE 369 +R IE Sbjct: 134 QKMANTRVVIE 144 >gi|82702355|ref|YP_411921.1| ErfK/YbiS/YcfS/YnhG [Nitrosospira multiformis ATCC 25196] gi|82410420|gb|ABB74529.1| ErfK/YbiS/YcfS/YnhG [Nitrosospira multiformis ATCC 25196] Length = 159 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 51/181 (28%), Gaps = 41/181 (22%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ-------TPILHSRINRIM----FNPYW 244 + V IP+ +L+ + V R + + TP+ I + Sbjct: 3 IEVGIPSQTLDLHDKNAVVRRYRISSAKNGVGQENGSFCTPLGRHIIRAKIGTDQPVNTV 62 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + R + + + + + W S P F Sbjct: 63 FVKRRPTGEIYTPEFAAN---FPRRDWILTR----------ILWLSGCEPGF-------- 101 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPT 362 N + R Y+H TP+ + + GC+R+RN +L + T Sbjct: 102 -NRLGKVDTM---RRYIYIHGTPDSVEMGKPG---SIGCIRMRNQDLLELFDLVEAGTEV 154 Query: 363 W 363 Sbjct: 155 D 155 >gi|329929360|ref|ZP_08283108.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] gi|328936447|gb|EGG32892.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] Length = 468 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 58/233 (24%), Gaps = 24/233 (10%) Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 + G V+++ L+ R +L +L + + Sbjct: 221 RLKRSAGQWADLQVETAVLQEAAKQYKARHGRLPKSLDELTQPYPNNWLSGRSKAMEQMF 280 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + + + T +P++ P +I L Sbjct: 281 ETLMQQQSQGAGGQGQAGQQPGNSTEEPGYWGTSPSGDPFFEQPLQVIIDRKRHRLAVVS 340 Query: 264 QYLKDNNIHMIDEKGKE------VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + N + K + + V+ N + + ++ Sbjct: 341 GGILLRNYEVGLGGAKTPLGDFHINDKVVNPNGTTKGPY------------GTRGMQLSD 388 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHI 368 +H T + + GC+R+ ++ +L + T R + Sbjct: 389 T-LYAIHGTLDMDSIGANE---SEGCIRMLTEDVEELFDLVPMGTAVKIREGV 437 >gi|294944769|ref|XP_002784421.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239897455|gb|EER16217.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 1445 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 20/42 (47%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 A+K FQ H L G +D T + + ++ R ++++ Sbjct: 1012 PGTVDAIKGFQEYHSLPVDGNMDDRTWQLLVDSLETRRQKIE 1053 >gi|220934434|ref|YP_002513333.1| ErfK/YbiS/YcfS/YnhG family protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995744|gb|ACL72346.1| ErfK/YbiS/YcfS/YnhG family protein [Thioalkalivibrio sp. HL-EbGR7] Length = 220 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNI--IDLDVWLLKDT 360 Y+H T E L + GCVR+ N I+L + T Sbjct: 176 IYIHGTDEEGLIGQP---ASDGCVRMTNAAVIELFDQVPLGT 214 >gi|114705232|ref|ZP_01438140.1| hypothetical protein FP2506_09846 [Fulvimarina pelagi HTCC2506] gi|114540017|gb|EAU43137.1| hypothetical protein FP2506_09846 [Fulvimarina pelagi HTCC2506] Length = 143 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 5/53 (9%) Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTPTWSRYHIEE 370 +H T + + R + GCVR+ N + + +R ++ Sbjct: 94 GYAIHGT---GAISRLGRPASHGCVRLHPANAKAFYNLVRRHGMGNTRVVVQR 143 >gi|15891172|ref|NP_356844.1| lytic murein transglycosylase [Agrobacterium tumefaciens str. C58] gi|15159526|gb|AAK89629.1| lytic murein transglycosylase [Agrobacterium tumefaciens str. C58] Length = 406 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 11/84 (13%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 +I GG WP P L + L+ R+ G D + F + ++A+ Sbjct: 329 EIAGYGGMQQKWPR-PDGTLDIREK----FELQTRMKELGYYDGE--IDGNFGSGSKAAI 381 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMN 166 Q R G+ G L A+ Sbjct: 382 SAIQSRMGMQNDGEPSQRLLRALR 405 >gi|328544242|ref|YP_004304351.1| ErfK/YbiS/YcfS/YnhG [polymorphum gilvum SL003B-26A1] gi|326413984|gb|ADZ71047.1| ErfK/YbiS/YcfS/YnhG [Polymorphum gilvum SL003B-26A1] Length = 141 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 20/107 (18%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF-----YSRNN 320 L D + + G+ V V R P + +A + Sbjct: 31 LSDQEMQV-SVGGRLVHTWPVSTARRGYRTPTGRYRPTR---LARVWYSTIYDYAPMPYS 86 Query: 321 TY------MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKD 359 + +H T E N+ R + GCVR+ N L + + Sbjct: 87 IFFKGGYAIHGTTE---IRNLGRPASHGCVRLHPDNARALFELIEAN 130 >gi|298249255|ref|ZP_06973059.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297547259|gb|EFH81126.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 18/38 (47%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + F + AV FQ +GLDP G+V T A+ Sbjct: 163 AVDGQFGVLTQQAVFDFQDYYGLDPDGIVGPRTWHALG 200 >gi|84684732|ref|ZP_01012632.1| hypothetical protein 1099457000245_RB2654_02449 [Maritimibacter alkaliphilus HTCC2654] gi|84667067|gb|EAQ13537.1| hypothetical protein RB2654_02449 [Rhodobacterales bacterium HTCC2654] Length = 222 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 51/164 (31%), Gaps = 10/164 (6%) Query: 190 KMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + Y + + AVE G V V P ++ Y+V Sbjct: 30 PLPDFYGPITDEPYPIPAVEEGVVHPSLWRQEVANPWPNRPRGTIVVDPNEARLYFVDTP 89 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ---DPGKI 305 + +++ + + + + + + PE + +R+ +PG Sbjct: 90 ETATRYGVSVGAAGFAWAGIARLQFWRDWPRWKVPDAMIERKPELAQYSWRKGGMEPGPG 149 Query: 306 NAMASTKIEFYSR--NNTY-MHDTPEPILFNNVVRFETSGCVRV 346 N M + + + + Y +H +SGC+R+ Sbjct: 150 NPMGARALYLFDDGVDTLYRIHGDASARELGQ---AVSSGCIRM 190 >gi|219848318|ref|YP_002462751.1| peptidoglycan-binding domain 1 protein [Chloroflexus aggregans DSM 9485] gi|219542577|gb|ACL24315.1| Peptidoglycan-binding domain 1 protein [Chloroflexus aggregans DSM 9485] Length = 478 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ + +P + +V L+ RL G + F +AV+ F++ GL Sbjct: 401 GFATISPQPANHRQFDPAVADLQGRLATLGF--DPGPIDGLFGPTTATAVQAFRIATGLP 458 Query: 153 PSGMVD 158 +D Sbjct: 459 AGDSID 464 >gi|310826913|ref|YP_003959270.1| Peptidoglycan-binding lysin domain protein [Eubacterium limosum KIST612] gi|308738647|gb|ADO36307.1| Peptidoglycan-binding lysin domain protein [Eubacterium limosum KIST612] Length = 331 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + +++E L G + +A+K FQ ++GL+ G+ T A+ + Sbjct: 277 EIAQIQETLKRQGY---DIAIDGGAGPISIAALKDFQTKNGLEADGICGDLTRAALGI 331 >gi|255541150|ref|XP_002511639.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223548819|gb|EEF50308.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] Length = 363 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + +L+ G L ++ FD +ESAV +Q + GL +G +D + Sbjct: 59 RRGSHVSGMSQLKRYFHHFGYLPLRDFDNITDTFDVPLESAVFRYQAKLGLPITGELDFN 118 Query: 161 TLEAMNVP 168 T+ + P Sbjct: 119 TVSQLMAP 126 >gi|213616032|ref|ZP_03371858.1| hypothetical protein SentesTyp_16804 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 75 Score = 42.3 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Query: 313 IEFYSRNNTYM-HDTPEPILFNNVVRFETSGCVRVRN 348 + + Y+ H T F +R +SGC+R+R+ Sbjct: 1 MRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 34 >gi|16077289|ref|NP_388102.1| pepdidoglycan binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|221308033|ref|ZP_03589880.1| hypothetical protein Bsubs1_01223 [Bacillus subtilis subsp. subtilis str. 168] gi|221312356|ref|ZP_03594161.1| hypothetical protein BsubsN3_01226 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317289|ref|ZP_03598583.1| hypothetical protein BsubsJ_01228 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321553|ref|ZP_03602847.1| hypothetical protein BsubsS_01249 [Bacillus subtilis subsp. subtilis str. SMY] gi|81555893|sp|O31447|YBFG_BACSU RecName: Full=Uncharacterized protein ybfG gi|2632506|emb|CAB12014.1| putative pepdidoglycan binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|3599642|dbj|BAA33117.1| ybfG [Bacillus subtilis] Length = 732 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 101 PLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+S V ++ L +G + V SAVK FQ L +G D Sbjct: 211 TLTPGDSRTGFVLIVQYALYCNGKSFDPGEFDGKYGVGVVSAVKAFQEFMCLPQTGYADM 270 Query: 160 STLEAMNVPVDL 171 T++A+ Sbjct: 271 PTIKALLSSSGD 282 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 11/78 (14%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA-------- 164 L+ L G G + F E+AVK FQ GL G+V + ++A Sbjct: 84 LQGALWCKGF--NPGGFTGVFYEKTENAVKEFQKAAGLTTQDGIVTTLIMKALLDMSAFK 141 Query: 165 MNVPVDLRIRQLQVNLMR 182 + D RIRQ+Q NL R Sbjct: 142 LVSGGDSRIRQIQQNLNR 159 >gi|301627877|ref|XP_002943093.1| PREDICTED: matrix metalloproteinase-17, partial [Xenopus (Silurana) tropicalis] Length = 518 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P S + AVK Q GL +G +D +T+ MN P Sbjct: 3 LTRYGYLPPPDPFSARQQTLEGLREAVKAMQRVAGLPETGELDDATVRMMNKPRCSLPDI 62 Query: 176 LQVNLMRIK 184 + R + Sbjct: 63 IMRPEGRSR 71 >gi|260683966|ref|YP_003215251.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile CD196] gi|260687626|ref|YP_003218760.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile R20291] gi|260210129|emb|CBA64277.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile CD196] gi|260213643|emb|CBE05474.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile R20291] Length = 175 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 17/42 (40%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S F +AVK Q R GL G+V ST +A Sbjct: 132 SSIDDDSEFGPATYNAVKSLQGRLGLTRDGIVGRSTWDAAGR 173 >gi|254975977|ref|ZP_05272449.1| hypothetical protein CdifQC_11719 [Clostridium difficile QCD-66c26] gi|255093365|ref|ZP_05322843.1| hypothetical protein CdifC_12004 [Clostridium difficile CIP 107932] gi|255101545|ref|ZP_05330522.1| hypothetical protein CdifQCD-6_12099 [Clostridium difficile QCD-63q42] gi|255315110|ref|ZP_05356693.1| hypothetical protein CdifQCD-7_12197 [Clostridium difficile QCD-76w55] gi|255517780|ref|ZP_05385456.1| hypothetical protein CdifQCD-_11761 [Clostridium difficile QCD-97b34] gi|255650895|ref|ZP_05397797.1| hypothetical protein CdifQCD_11961 [Clostridium difficile QCD-37x79] gi|306520782|ref|ZP_07407129.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile QCD-32g58] Length = 195 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 17/42 (40%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S F +AVK Q R GL G+V ST +A Sbjct: 152 SSIDDDSEFGPATYNAVKSLQGRLGLTRDGIVGRSTWDAAGR 193 >gi|294139662|ref|YP_003555640.1| general secretion pathway protein A [Shewanella violacea DSS12] gi|293326131|dbj|BAJ00862.1| general secretion pathway protein A [Shewanella violacea DSS12] Length = 531 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G++ +Q L L + L FD+ +E+ +K FQ +HGL Sbjct: 445 PTDQLGEIDKGSAQSQIQWLENSLAQVD--SRTPRLLNDFDSQLETKLKHFQRQHGLRAD 502 Query: 155 GMVDSSTLEAMN 166 + S TL +N Sbjct: 503 AIAGSQTLVQLN 514 >gi|146339385|ref|YP_001204433.1| hypothetical protein BRADO2369 [Bradyrhizobium sp. ORS278] gi|146192191|emb|CAL76196.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278] Length = 453 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 12/67 (17%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 N +H P P + GCVR+ L T W + ++ Sbjct: 67 NGVALHGGPLPGY------AASHGCVRM--PYGFAEKLFDRT--WIGMRV--IIAPGDPV 114 Query: 379 PVKLATE 385 PV+ + Sbjct: 115 PVEFSHP 121 >gi|148653769|ref|YP_001280862.1| lytic murein transglycosylase [Psychrobacter sp. PRwf-1] gi|148572853|gb|ABQ94912.1| lytic murein transglycosylase [Psychrobacter sp. PRwf-1] Length = 486 Score = 42.3 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G S + L++ L + G + A++ +Q +GL P G Sbjct: 351 PGLSRKQSRELQQALNLLGY--DIGEVDGIIGDGTRRAIQQYQTDNGLTPDGRAGKK 405 >gi|188581913|ref|YP_001925358.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179345411|gb|ACB80823.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 224 Score = 41.9 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDSSTLEAMNVPV 169 ++++E L+ G G A+ LFQ L+ G + T+ A+ + Sbjct: 4 KQIQEALLARGHDLGPTGADGVLGRRTIEAITLFQKAEKLEIRFPGTIGPKTIAALGISA 63 Query: 170 DLRIRQ 175 + Sbjct: 64 AEPMAP 69 >gi|297850892|ref|XP_002893327.1| hypothetical protein ARALYDRAFT_889959 [Arabidopsis lyrata subsp. lyrata] gi|297339169|gb|EFH69586.1| hypothetical protein ARALYDRAFT_889959 [Arabidopsis lyrata subsp. lyrata] Length = 387 Score = 41.9 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + +L++ G + S + FD +++AV+++Q L+ +G++D T Sbjct: 55 GKKYDGLYKLKQYFQHFGYIPETDLSGNFTDDFDDILKNAVEMYQRNFQLNVTGVLDELT 114 Query: 162 LEAMNVP 168 L+ + +P Sbjct: 115 LKHVVIP 121 >gi|156741206|ref|YP_001431335.1| ErfK/YbiS/YcfS/YnhG family protein [Roseiflexus castenholzii DSM 13941] gi|156232534|gb|ABU57317.1| ErfK/YbiS/YcfS/YnhG family protein [Roseiflexus castenholzii DSM 13941] Length = 413 Score = 41.9 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 37/244 (15%) Query: 142 VKLFQMRHGLDPSGM-VDSSTLEAMNVPVDLRIRQLQVNLMRIKK-LLEQKMGLRYVLVN 199 +K +Q R GL G + E + +RI Q R + +K+ Y + Sbjct: 188 LKFWQKRGGLRIFGYPISEPFEEISPIDGQVRITQY---FERARFEYHPEKLPAFYRQME 244 Query: 200 IPA-------ASLEAVENGKVGL--------RSTVIVGRVDRQTPILHSRINRIMFNPYW 244 ++ + G+ + + + G + + RI + Sbjct: 245 RANGIMLAGLYEVQLTDLGRQAMQRRGHTPQSTGPMPGAPVWSSALFERRIEVNLSTQML 304 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + + R P + + + + + Sbjct: 305 T-----AFEGEAPVYRA-PVATGRDGFNTPVGTFAVYSKLPIQTMTGSAGGESWYVPDIP 358 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 +++ +H T + VR + GC+ + NI D WL + T + Sbjct: 359 -------WVQYVVG-GVALHGTYWHDAWGTGVRM-SHGCINL-NIDD-AEWLYRWTDIGT 407 Query: 365 RYHI 368 R I Sbjct: 408 RVDI 411 >gi|114765851|ref|ZP_01444944.1| hypothetical protein 1100011001323_R2601_11144 [Pelagibaca bermudensis HTCC2601] gi|114541850|gb|EAU44887.1| hypothetical protein R2601_11144 [Roseovarius sp. HTCC2601] Length = 391 Score = 41.9 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G S + L+ L G G+ A SAV+ Q R GL G Sbjct: 332 PGLSGEQMLALQRALDAKGY--DVGGIDGILGAGTRSAVRDMQARLGLPADG 381 >gi|269126589|ref|YP_003299959.1| glycoside hydrolase family 25 [Thermomonospora curvata DSM 43183] gi|268311547|gb|ACY97921.1| glycoside hydrolase family 25 [Thermomonospora curvata DSM 43183] Length = 297 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 3/64 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+R + R+ G + E + FQ GL G+V T A Sbjct: 235 MHGQDVRRWQARMRERG---WRIAADGWYGPASERVCRAFQAEKGLAVDGVVGPVTWRAA 291 Query: 166 NVPV 169 Sbjct: 292 WEAP 295 >gi|254442802|ref|ZP_05056278.1| ErfK/YbiS/YcfS/YnhG superfamily [Verrucomicrobiae bacterium DG1235] gi|198257110|gb|EDY81418.1| ErfK/YbiS/YcfS/YnhG superfamily [Verrucomicrobiae bacterium DG1235] Length = 178 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 15/59 (25%) Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 Q PG+ + Y+H T + ++GCV++RN +L + Sbjct: 124 QGPGRD----------SYQRYIYIHGTNHEEKIGSP---ASAGCVQLRNAEMIELFDAV 169 >gi|86749899|ref|YP_486395.1| hypothetical protein RPB_2782 [Rhodopseudomonas palustris HaA2] gi|86572927|gb|ABD07484.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 503 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 12/67 (17%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 N +H P P + GCVR+ L T R + +V + T Sbjct: 114 NGIALHGGPLPGY------AASHGCVRM--PYGFAETLFDRT----RIGMRVIVSPQDTA 161 Query: 379 PVKLATE 385 PV ++ Sbjct: 162 PVDISHP 168 >gi|332206790|ref|XP_003252478.1| PREDICTED: matrix metalloproteinase-19 [Nomascus leucogenys] Length = 503 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER-----LIISGDLDPSKGLSVAFDAY-VESAVKLFQM 147 WP+L + L S V L E L G L S F + A++ FQ Sbjct: 3 WPQLWLGFLLPMTVSGRVLGLAEVAAVDYLSQYGYLQKPLEGSNNFKPEDITEALRAFQE 62 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 L SG +D +T M P Sbjct: 63 ASELPVSGQLDDATRARMRQP 83 >gi|213691418|ref|YP_002322004.1| Peptidoglycan-binding domain 1 protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522879|gb|ACJ51626.1| Peptidoglycan-binding domain 1 protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457489|dbj|BAJ68110.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 350 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 7/102 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLE 163 G++ V L++ L G + + + + V + G +P G + + + Sbjct: 119 GDTGPDVLALQQELARLGY---NAEGNGTYGWRTKDGVNQLLSQAGDRNPDGRIGPTDVA 175 Query: 164 AMNVPVDLRIRQ---LQVNLMRIKKLLEQKMGLRYVLVNIPA 202 + + L NL ++++ L + PA Sbjct: 176 WLPQTTATPTQCTAGLNTNLTDGAEIMKTGGQLTAITFPTPA 217 >gi|240139544|ref|YP_002964020.1| hypothetical protein MexAM1_META1p2995 [Methylobacterium extorquens AM1] gi|240009517|gb|ACS40743.1| Conserved hypothetical protein; putative exported protein, putative ErfK/YbiS/YcfS/YnhG domain [Methylobacterium extorquens AM1] Length = 211 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 12/71 (16%) Query: 308 MASTKIEFYSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLK 358 + + + +H T + R + GCVR+ RN L + + Sbjct: 74 FSREWDNAPMPHAIFFTQVGHAIHGTTHTR---RLGRAASHGCVRLSQRNAATLFSLVKQ 130 Query: 359 DTPTWSRYHIE 369 +R IE Sbjct: 131 QKMANTRVVIE 141 >gi|148263549|ref|YP_001230255.1| peptidoglycan binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146397049|gb|ABQ25682.1| Peptidoglycan-binding domain 1 protein [Geobacter uraniireducens Rf4] Length = 536 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G+S V RL++ L +G L+ FDA ++A+K +++ G++ S V Sbjct: 454 TISAGSSGWRVSRLQQLLAGAGFYKIR--LNGVFDAATQNALKQYRLARGIEQSDRVGEL 511 Query: 161 TL 162 TL Sbjct: 512 TL 513 >gi|227515313|ref|ZP_03945362.1| cell surface protein [Lactobacillus fermentum ATCC 14931] gi|227086327|gb|EEI21639.1| cell surface protein [Lactobacillus fermentum ATCC 14931] Length = 199 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 20/145 (13%) Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMID-----EKGKEVF 282 ++ + I+ + P D+ + ++ YL DN + GK Sbjct: 48 VMRTPIDWQKSSETVAYPDVNAHPDLWIKVSKKKQRVYLIDNGKILYTMYCSTGTGKNDT 107 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN--------N 334 + E + + Q G+ A + + + H P N Sbjct: 108 PTGTYYIQAERGTYFYSQQSGEG---AHYWVSWLNHGEYLFHSVPTDESGNYKLSEAKQL 164 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKD 359 + + GCVR+ W ++ Sbjct: 165 GKKAASHGCVRLSVPD--AKWFYEN 187 >gi|329888601|ref|ZP_08267199.1| phage lysozyme family protein [Brevundimonas diminuta ATCC 11568] gi|328847157|gb|EGF96719.1| phage lysozyme family protein [Brevundimonas diminuta ATCC 11568] Length = 206 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 23/165 (13%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P L + + L + G L + D + +A+K GL Sbjct: 12 PHAPGGKLKP-DWVPMIDALAD---AMG-LPRAADAPGDPDPELIAALK---KDEGLR-- 61 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIPAASLEAVENGKV 213 L+A P+ R R + + + G ++ A +E+ + Sbjct: 62 -------LKAYPDPLSPRARTGKGSGAPWTIGYGRARGIQEGQVITEATAEAWLIEDARE 114 Query: 214 GLRSTVIVGRVDR---QTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VI + P+ I + FN W P++ ++ + Sbjct: 115 --HNRVIHAALPWLKRLDPVRRRVIENMHFNMGWDDPKTPQREGL 157 >gi|320094135|ref|ZP_08025948.1| hypothetical protein HMPREF9005_0560 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978937|gb|EFW10467.1| hypothetical protein HMPREF9005_0560 [Actinomyces sp. oral taxon 178 str. F0338] Length = 372 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%) Query: 100 RPLHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R S V +L L G + +D +A++ +Q GL +G++ Sbjct: 112 RAFEPDMSNGDDVTQLETALKELGYFTGEP--NTHYDWLTRAAIQKWQKDKGLTQNGIL 168 >gi|74316079|ref|YP_313819.1| lytic murein transglycosylase [Thiobacillus denitrificans ATCC 25259] gi|74055574|gb|AAZ96014.1| lytic murein transglycosylase [Thiobacillus denitrificans ATCC 25259] Length = 434 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 10/95 (10%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 T+AQ + +A ++ P + L L V+ L++ L G + Sbjct: 326 TVAQLAQQLADGDGLVH----PAVEEAALSLVQ----VKLLQQALNELGF--DAGEPDGV 375 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++A++ +Q+ H L G S+ + + Sbjct: 376 LGPQTQAALRRYQVVHALPADGYPGSAVMAHVART 410 >gi|310825599|ref|YP_003957957.1| peptidoglycan binding-like protein [Stigmatella aurantiaca DW4/3-1] gi|309398671|gb|ADO76130.1| Peptidoglycan binding-like protein [Stigmatella aurantiaca DW4/3-1] Length = 538 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 17/73 (23%) Query: 104 LGNSSVSVQR----LRERLIISGDLDPSKGLSVAFDAY------------VESAVKLFQM 147 +G +V +++RL G L + D A++ FQ Sbjct: 145 VGARGANVPADVRQVQDRLHELGFLSDEAYTAEQADPAQTEAVAEAAMPQTIEAIREFQR 204 Query: 148 R-HGLDPSGMVDS 159 G+ P G V Sbjct: 205 EVAGITPDGNVGP 217 >gi|291409995|ref|XP_002721290.1| PREDICTED: matrix metalloproteinase 21 [Oryctolagus cuniculus] Length = 574 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDLRIRQLQVNLMRIKKLLEQK 190 A + AV+ FQ + L SG +D++TL AMN P D R+ Sbjct: 81 GAALAEAVRRFQQVNALPASGELDAATLAAMNRPRCGVPDTRLPPPAAPTTLPPWGSPSP 140 Query: 191 MG 192 +G Sbjct: 141 LG 142 >gi|213028701|ref|ZP_03343148.1| hypothetical protein Salmonelentericaenterica_43278 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 113 Score = 41.9 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 H T F +R + GCVR+RN D+ +L ++ P +R Sbjct: 1 HGTNAN--FGIGLR-VSHGCVRLRN-DDI-KFLFENVPVGTRVQF 40 >gi|321471531|gb|EFX82503.1| hypothetical protein DAPPUDRAFT_316218 [Daphnia pulex] Length = 550 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 9/75 (12%) Query: 118 LIISGDLDPSKGLSVAFDAYV-----ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP---V 169 L G L+ ++ V SA++ FQ GL+ +G +D TLE M+ P V Sbjct: 83 LERFGYLER-GPQDSSYSESVSAESFRSAIEDFQSFAGLNKTGEIDKETLELMSKPRCGV 141 Query: 170 DLRIRQLQVNLMRIK 184 R+R + R + Sbjct: 142 ADRVRPGHSSTRRKR 156 >gi|256852003|ref|ZP_05557390.1| periplasmic protease [Lactobacillus jensenii 27-2-CHN] gi|260661428|ref|ZP_05862341.1| periplasmic protease [Lactobacillus jensenii 115-3-CHN] gi|256615415|gb|EEU20605.1| periplasmic protease [Lactobacillus jensenii 27-2-CHN] gi|260547883|gb|EEX23860.1| periplasmic protease [Lactobacillus jensenii 115-3-CHN] Length = 341 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 9/80 (11%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQ--RLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y + P + +LG + V+ + RL G ++ +AV Sbjct: 102 YYQVQYNQIQPSIYAPGYNLGYNYEGVKTWLVMRRL---GTYAGYAN----YNWATVNAV 154 Query: 143 KLFQMRHGLDPSGMVDSSTL 162 K FQ HGL+P+G+VD +T Sbjct: 155 KNFQASHGLNPTGIVDLATW 174 >gi|254491768|ref|ZP_05104947.1| ErfK/YbiS/YcfS/YnhG superfamily [Methylophaga thiooxidans DMS010] gi|224463246|gb|EEF79516.1| ErfK/YbiS/YcfS/YnhG superfamily [Methylophaga thiooxydans DMS010] Length = 165 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 7/58 (12%) Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 N + + R Y+H P+ + + GC+R+ N DL + P Sbjct: 108 KNRLGNVDTM---RRYIYIHGCPDALPMGQ---ALSHGCIRMHN-RDLLTLFEQVKPG 158 >gi|291237328|ref|XP_002738587.1| PREDICTED: matrix metalloproteinase 19 isoform rasi-1 preproprotein-like [Saccoglossus kowalevskii] Length = 525 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L K D +AV+ FQ L+ +G +D T+ M P Sbjct: 48 LEKFGYLKKLKEGVQHDDKSTNAAVRAFQRMANLEETGNMDEKTIAMMQAP 98 >gi|317406972|gb|EFV87017.1| hypothetical protein HMPREF0005_05881 [Achromobacter xylosoxidans C54] Length = 383 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S ++ ++E L G A AV+ Q + L G V + Sbjct: 321 PGLSRAQIKEVQEMLNARGY--DVGTADGIPGAKTRDAVRAEQEKRNLPQDGRVGKRIYD 378 Query: 164 AMNV 167 A+ Sbjct: 379 ALKA 382 >gi|328541951|ref|YP_004302060.1| ErfK/YbiS/YcfS/YnhG family protein [polymorphum gilvum SL003B-26A1] gi|326411701|gb|ADZ68764.1| ErfK/YbiS/YcfS/YnhG family protein [Polymorphum gilvum SL003B-26A1] Length = 144 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 5/46 (10%) Query: 316 YSRNNTYMHDTPE---PILFNNVVRFETSGCVRVR--NIIDLDVWL 356 ++ + H ++ R + GCVR+ N L + Sbjct: 85 PMPHSVFFHGGYAIHGTDAIKSLGRPASHGCVRLHPDNARALFTLI 130 >gi|310817038|ref|YP_003965002.1| membrane-bound lytic murein transglycosylase B [Ketogulonicigenium vulgare Y25] gi|308755773|gb|ADO43702.1| membrane-bound lytic murein transglycosylase B [Ketogulonicigenium vulgare Y25] Length = 419 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +L+ERL +G + G + +A++ +Q +GL G S LE + Sbjct: 368 QLQERLTRAGY--NTGGADGILGSNSLNAIRAYQRANGLTADGYPSRSLLERLR 419 >gi|113477723|ref|YP_723784.1| OpcA protein [Trichodesmium erythraeum IMS101] gi|110168771|gb|ABG53311.1| OpcA protein [Trichodesmium erythraeum IMS101] Length = 445 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 6/70 (8%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE----AMNVPVD 170 ++ L G + + +AVK Q + L +G VD TL + Sbjct: 56 QQLLGGLGFY--NGPIDGIHGPETRNAVKEAQKAYKLTITGRVDPKTLAKLREEFAKKPE 113 Query: 171 LRIRQLQVNL 180 + VNL Sbjct: 114 DSQKITNVNL 123 >gi|196231513|ref|ZP_03130371.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196224366|gb|EDY18878.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 268 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 43/169 (25%), Gaps = 28/169 (16%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 K + +++P + E+G R + + Sbjct: 22 ATKPNPHLIRISVPDQKMVLFEHGVEIARYDISTSKFGVGDRPGSYA----------TPL 71 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + ++ + + K+ G+ V + R N Sbjct: 72 GEMEVREKIGSGQPSGMKFKNR-----RPTGEIVRPNTPGRDPIVSRILWLRGLE-PQN- 124 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 + + Y+H T E + GC+R+ ++I L Sbjct: 125 --HRAFD----RDIYIHGTAEEWSIGTP---ASYGCIRMRSHDVIQLFD 164 >gi|327277063|ref|XP_003223285.1| PREDICTED: matrix metalloproteinase-19-like [Anolis carolinensis] Length = 475 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 106 NSSVSVQRLRER-----LIISGDLDPSKGL-SVAFDAY-VESAVKLFQMRHGLDPSGMVD 158 +V RL E+ L+ G L S F +E A++ FQ+ GL +G VD Sbjct: 19 AKGAAVTRLEEKEALDYLLQFGYLQKPLEQFSNNFTEEEIEEALRSFQLASGLPVTGRVD 78 Query: 159 SSTLEAMNVP 168 +TL M P Sbjct: 79 VATLSQMRQP 88 >gi|284051018|ref|ZP_06381228.1| histidine kinase [Arthrospira platensis str. Paraca] Length = 264 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S ++ ++ L G + + + E+A++ Q +GL +G D +TL+ + Sbjct: 196 SDNIIAIQTLLANGGFY--NGSIDNIWGVETETAIQDAQNAYGLPVTGQPDRATLQQLVQ 253 Query: 168 P 168 Sbjct: 254 S 254 >gi|126740201|ref|ZP_01755890.1| peptidoglycan-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718656|gb|EBA15369.1| peptidoglycan-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 382 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + L+ RL G + G ++A++ +Q GL +G L + Sbjct: 326 KDDRI-ALQRRLTAKGF--DTGGADGVLGPNSQAAIRAYQSSIGLPATGQPSPELLRRLG 382 >gi|85714730|ref|ZP_01045717.1| hypothetical protein NB311A_21146 [Nitrobacter sp. Nb-311A] gi|85698615|gb|EAQ36485.1| hypothetical protein NB311A_21146 [Nitrobacter sp. Nb-311A] Length = 462 Score = 41.9 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ ++ LI G L + A+ ++Q + G+ +G +D T+ ++ + Sbjct: 294 EDIRVIQRVLIDRGLLHGDA--DGVWGPATREAITVYQRQQGIAVTGTIDMRTVSSLGIS 351 >gi|323492329|ref|ZP_08097482.1| hypothetical protein VIBR0546_10844 [Vibrio brasiliensis LMG 20546] gi|323313376|gb|EGA66487.1| hypothetical protein VIBR0546_10844 [Vibrio brasiliensis LMG 20546] Length = 447 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 11/73 (15%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---------- 150 G V+ +++ LI G + G F + V+ FQ + Sbjct: 182 SYKSGARGQEVEYIQQALIKLGFDFGNAGADGDFGPTTKRQVEQFQKEYQETNNTHLAYQ 241 Query: 151 -LDPSGMVDSSTL 162 G+V TL Sbjct: 242 VGTIDGIVGQGTL 254 >gi|297520868|ref|ZP_06939254.1| hypothetical protein EcolOP_24757 [Escherichia coli OP50] Length = 129 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 320 NTYM-HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y+ H T F +R +SGC+R+R+ D+ + TP I +K Sbjct: 5 GVYLLHGTNAD--FGIGMR-VSSGCIRLRD-DDIKTLFSQVTPGTKVNIINTPIK 55 >gi|296160646|ref|ZP_06843461.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. Ch1-1] gi|295889172|gb|EFG68975.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. Ch1-1] Length = 270 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 3/63 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 SV L+ L P + +SA++ FQ G+ +G V T + Sbjct: 8 GTSVVFLQRALAQEN---PRLKVDGLSGPETQSALRRFQQLRGVPDTGTVCEQTRALVAQ 64 Query: 168 PVD 170 Sbjct: 65 TAQ 67 >gi|86133683|ref|ZP_01052265.1| conserved hypothetical protein [Polaribacter sp. MED152] gi|85820546|gb|EAQ41693.1| conserved hypothetical protein [Polaribacter sp. MED152] Length = 217 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + + ++++L+ G + + + +A+K F+ ++ L G +D TLE Sbjct: 157 GEKNAIIYEVQKKLVEQG---ETVRIDGVYRIETLNAIKAFEEKNNLLADGYLDELTLEW 213 Query: 165 M 165 + Sbjct: 214 L 214 >gi|260462409|ref|ZP_05810617.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium opportunistum WSM2075] gi|259031903|gb|EEW33171.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium opportunistum WSM2075] Length = 278 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 18/160 (11%), Positives = 46/160 (28%), Gaps = 20/160 (12%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY----HSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + +G + P+ + + +++ F + A P + + Sbjct: 23 IAVGGMISRNPVLVGGSTAFLVTLFYVSANALWYQPFPHAGAFFATRSFQGFPHTATDEP 82 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 T +I+ P V++++ L + Sbjct: 83 ETT-------INIVRPNAAPAPIKG-------DPVVEQVQGILKDLDFYS--GTVDGISG 126 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 A++ +Q + GL+ SG +D+ L+ + Sbjct: 127 PNTRKAIEAYQQKVGLNASGEIDAMLLDQLGATPKTAAVP 166 Score = 39.6 bits (91), Expect = 0.95, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + +++ L G + L A ++A+K FQ GL +G D Sbjct: 216 DPRIVKIQAGLKAFG--NDDMQLDGVVGARTKAAIKEFQSLFGLPQTGEPDE 265 >gi|255657666|ref|ZP_05403075.1| hypothetical protein CdifQCD-2_18693 [Clostridium difficile QCD-23m63] gi|296450189|ref|ZP_06891950.1| probable peptidoglycan-binding/hydrolysing protein [Clostridium difficile NAP08] gi|296878570|ref|ZP_06902575.1| probable peptidoglycan-binding/hydrolyzing protein [Clostridium difficile NAP07] gi|296260952|gb|EFH07786.1| probable peptidoglycan-binding/hydrolysing protein [Clostridium difficile NAP08] gi|296430377|gb|EFH16219.1| probable peptidoglycan-binding/hydrolyzing protein [Clostridium difficile NAP07] Length = 195 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 17/42 (40%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S F +AVK Q R GL G+V ST +A Sbjct: 152 SSIKDDSEFGPATYNAVKSLQGRLGLTRDGIVGRSTWDAAGR 193 >gi|15894034|ref|NP_347383.1| ErfK family protein [Clostridium acetobutylicum ATCC 824] gi|15023630|gb|AAK78723.1|AE007590_3 Secreted protein containing uncharacterized conserved protein of ErfK family [Clostridium acetobutylicum ATCC 824] gi|325508161|gb|ADZ19797.1| Secreted protein containing uncharacterized conserved protein of ErfK family [Clostridium acetobutylicum EA 2018] Length = 466 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 13/109 (11%) Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP------GKINAMASTK 312 L + + N ++ V E D +++ G + + S Sbjct: 352 LSKQHLWFYKNGSLVVQGDVVTGNVSENDATPAGVYRLKYKERNATLKGQGYSSPV-SYW 410 Query: 313 IEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRVRNIIDLDVWLLKD 359 + F +HD +F + GCV + DL + ++ Sbjct: 411 MPFNG--GIGIHDANWRSVFGGEIYKTGGSHGCV--NSPYDLAKTVFEN 455 >gi|329848176|ref|ZP_08263204.1| N-acetylmuramoyl-L-alanine amidase family protein [Asticcacaulis biprosthecum C19] gi|328843239|gb|EGF92808.1| N-acetylmuramoyl-L-alanine amidase family protein [Asticcacaulis biprosthecum C19] Length = 251 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 90 SRGGW--PELP-----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 G W P LP L +G++ V L+ L G + +D + V Sbjct: 155 GHGLWVEPALPPEGVMGPALTVGDTGPGVFALQGALGKLGY---NILPGGPYDDETATLV 211 Query: 143 KLFQMRH 149 + FQ Sbjct: 212 RAFQRHW 218 >gi|115375119|ref|ZP_01462387.1| putative peptidoglycan binding domain protein [Stigmatella aurantiaca DW4/3-1] gi|115367865|gb|EAU66832.1| putative peptidoglycan binding domain protein [Stigmatella aurantiaca DW4/3-1] Length = 491 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 17/73 (23%) Query: 104 LGNSSVSVQR----LRERLIISGDLDPSKGLSVAFDAY------------VESAVKLFQM 147 +G +V +++RL G L + D A++ FQ Sbjct: 98 VGARGANVPADVRQVQDRLHELGFLSDEAYTAEQADPAQTEAVAEAAMPQTIEAIREFQR 157 Query: 148 R-HGLDPSGMVDS 159 G+ P G V Sbjct: 158 EVAGITPDGNVGP 170 >gi|85707354|ref|ZP_01038436.1| hypothetical protein ROS217_03365 [Roseovarius sp. 217] gi|85668086|gb|EAQ22965.1| hypothetical protein ROS217_03365 [Roseovarius sp. 217] Length = 122 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 5/84 (5%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMH 324 L + EK + P + G N + + + + +H Sbjct: 24 LTKRGYTEVVEKRENPSWAPTPSMRERNPEWPALIPGGDPANPLGTRALYLSWQY-YRIH 82 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 T + R ++GC+ + N Sbjct: 83 GTQDTRKIG---RKSSNGCIGLYN 103 >gi|188582164|ref|YP_001925609.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179345662|gb|ACB81074.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 210 Score = 41.9 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 12/75 (16%) Query: 308 MASTKIEFYSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLK 358 + + + +H T + R + GCVR+ RN L + + Sbjct: 74 FSREWDNAPMPHAIFFTQVGHAIHGTTHTR---RLGRAASHGCVRLSQRNAATLFALVKQ 130 Query: 359 DTPTWSRYHIEEVVK 373 +R IE V Sbjct: 131 QKMANTRVVIEGSVA 145 >gi|253578557|ref|ZP_04855829.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850875|gb|EES78833.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 477 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMR 148 GG + G+ + SV L+E L G + + D A+K +Q Sbjct: 396 GGSYMFNPETVKAGDKNTSVLLLQEILRARGFKGKNGKALKLTWTADVNTIYALKAYQES 455 Query: 149 HG--LDPSGMVDSSTLE 163 L+ G+ S+T + Sbjct: 456 RKEVLEVDGICGSATWK 472 >gi|56751778|ref|YP_172479.1| glucose 6-phosphate dehydrogenase assembly protein [Synechococcus elongatus PCC 6301] gi|81301142|ref|YP_401350.1| opcA protein [Synechococcus elongatus PCC 7942] gi|93141292|sp|Q54709|OPCA_SYNE7 RecName: Full=Putative OxPP cycle protein opcA gi|56686737|dbj|BAD79959.1| glucose 6-phosphate dehydrogenase assembly protein [Synechococcus elongatus PCC 6301] gi|81170023|gb|ABB58363.1| opcA protein [Synechococcus elongatus PCC 7942] Length = 445 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 2/71 (2%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 ++ L G L +A+ Q + GL +G DS+T +A+ Sbjct: 58 QQILAALGLYH--GHLDGLHGPMTRAAIAQAQTQFGLPSTGRPDSATFKALRQAYQALKH 115 Query: 175 QLQVNLMRIKK 185 + ++ Sbjct: 116 SPSLTNQDLRG 126 >gi|329903586|ref|ZP_08273559.1| General secretion pathway protein A [Oxalobacteraceae bacterium IMCC9480] gi|327548281|gb|EGF32975.1| General secretion pathway protein A [Oxalobacteraceae bacterium IMCC9480] Length = 530 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 4/80 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G L +L + D P+ D + V+ FQ+ GL P G+ TL Sbjct: 454 GAQGPVSDWLAAQLAVI-DGSPAPPAGKPVDE---ARVRRFQLMQGLKPDGIAGPQTLMR 509 Query: 165 MNVPVDLRIRQLQVNLMRIK 184 + L +L + + Sbjct: 510 LASTAGLAEPRLHTPPVAAR 529 >gi|303241186|ref|ZP_07327694.1| Peptidase M23 [Acetivibrio cellulolyticus CD2] gi|302591313|gb|EFL61053.1| Peptidase M23 [Acetivibrio cellulolyticus CD2] Length = 740 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 109 VSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDP----SGMVDSST 161 V L+++L G D F + SAV ++ ++GL G V +T Sbjct: 186 EEVLLLQKKLNELGYTDDKGRKLVEDGLFGSNTLSAVNKYKEQNGLWNFGEYGGKVGKTT 245 Query: 162 LE 163 Sbjct: 246 WN 247 >gi|328544535|ref|YP_004304644.1| Lysozyme [polymorphum gilvum SL003B-26A1] gi|326414277|gb|ADZ71340.1| Lysozyme [Polymorphum gilvum SL003B-26A1] Length = 291 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAMNV 167 + L G + +AV FQ H L G + +T A+ Sbjct: 178 QRLLASLGY--RPGPVDGFDGPRTRAAVMRFQQDHPPLSVDGRIGPATRAALRR 229 >gi|307332608|ref|ZP_07611652.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306881741|gb|EFN12883.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 17/80 (21%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 +LSR GW + + L L G G+ AVK Q Sbjct: 183 AVLSRPGWDVVEAQCL---------------LDHLGF--DPGGVDGVDGEMTTRAVKRLQ 225 Query: 147 MRHGLDPSGMVDSSTLEAMN 166 + GL G+V T + + Sbjct: 226 EKAGLATDGLVGPQTWKVLR 245 >gi|225627891|ref|ZP_03785927.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella ceti str. Cudo] gi|256160175|ref|ZP_05457869.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M490/95/1] gi|256255381|ref|ZP_05460917.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti B1/94] gi|260169113|ref|ZP_05755924.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella sp. F5/99] gi|261222586|ref|ZP_05936867.1| N-acetylmuramoyl-L-alanine amidase [Brucella ceti B1/94] gi|261758622|ref|ZP_06002331.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. F5/99] gi|265998551|ref|ZP_06111108.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M490/95/1] gi|225617054|gb|EEH14100.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella ceti str. Cudo] gi|260921170|gb|EEX87823.1| N-acetylmuramoyl-L-alanine amidase [Brucella ceti B1/94] gi|261738606|gb|EEY26602.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. F5/99] gi|262553175|gb|EEZ09009.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M490/95/1] Length = 268 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSS 160 L G ++ L+ L + G ++ FD E +K FQ + G+ D S Sbjct: 195 LARGEQGQPMEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 161 TLE 163 T++ Sbjct: 252 TID 254 >gi|224136988|ref|XP_002326995.1| predicted protein [Populus trichocarpa] gi|222835310|gb|EEE73745.1| predicted protein [Populus trichocarpa] Length = 295 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L ++ FD E+A+ +Q + GL +G +D TL + P Sbjct: 3 ELKRYFHHFGYLPSQDLKSITDIFDDRFETAIVRYQAKLGLQTTGKLDLDTLNQIMAP 60 >gi|254503648|ref|ZP_05115799.1| Sel1 repeat family [Labrenzia alexandrii DFL-11] gi|222439719|gb|EEE46398.1| Sel1 repeat family [Labrenzia alexandrii DFL-11] Length = 1338 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++S ++ +++L G + SA++ FQ GL +G VDS ++ + Sbjct: 1276 DNSALIREAQDKLNYLGF--DTGTPDGQMGPRTRSAIRAFQRSLGLPETGQVDSRLIDEL 1333 Query: 166 NVPV 169 Sbjct: 1334 KSQA 1337 >gi|284045708|ref|YP_003396048.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283949929|gb|ADB52673.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 233 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 8/85 (9%) Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI-----EFYSRNNTYMHD 325 + + G Q +A+ ++ E+ + +H Sbjct: 135 LTVRIGIGAAATPTPAGRYWIREKLRFAAQPVYGTHALGTSAYAPTLTEWPAGGVVGLHG 194 Query: 326 TPEPILFNNVVRFETSGCVRVRNII 350 T +P L R + GCVR+RN Sbjct: 195 TDQPELI--PGRP-SHGCVRIRNAE 216 >gi|330824901|ref|YP_004388204.1| lytic murein transglycosylase [Alicycliphilus denitrificans K601] gi|329310273|gb|AEB84688.1| lytic murein transglycosylase [Alicycliphilus denitrificans K601] Length = 442 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 7/76 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP R L + S V+ L+E L G + + V+ +Q GL Sbjct: 374 PWP----RDLQPLSRS-DVKTLQELLNARGL--DAGTPDGVAGPATRAGVRRYQQSLGLP 426 Query: 153 PSGMVDSSTLEAMNVP 168 G L+ + P Sbjct: 427 ADGYATRELLQQLQEP 442 >gi|192362309|ref|YP_001984198.1| Chitosanase Csn46F [Cellvibrio japonicus Ueda107] gi|190688474|gb|ACE86152.1| Chitosanase Csn46F [Cellvibrio japonicus Ueda107] Length = 310 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 103 HLGNSSVSV--QRLRE---RLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 G ++SV LR RL+ G L S F SAVK FQ + L + Sbjct: 239 QPGTRTLSVQAPLLRGLDIRLVQLG-LSKSGINLRADGIFGNGSVSAVKTFQTKQNLPAT 297 Query: 155 GMVDSSTLEAM 165 G+VD++ + + Sbjct: 298 GIVDNALIAKL 308 >gi|86747744|ref|YP_484240.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86570772|gb|ABD05329.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris HaA2] Length = 460 Score = 41.9 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 19/109 (17%) Query: 82 IAFYQDILSRGGWP---ELPIRPLHLGNSSVSVQRLR------------ERLIISGDLDP 126 IA + + P +P ++ L+ ER I DL Sbjct: 11 IASATGLAAAQTAPPSGAVPAVKPKPVATTPVRPALQTPAETAQAMTPAERQAIQSDLAW 70 Query: 127 SKGLSVAFD----AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + + + + +A+K FQ HG +G+++ + Sbjct: 71 TGDYNGVINGEPSERMVTAIKAFQKNHGGKQTGVLNPQERAQLTEAARK 119 >gi|319762822|ref|YP_004126759.1| lytic murein transglycosylase [Alicycliphilus denitrificans BC] gi|317117383|gb|ADU99871.1| lytic murein transglycosylase [Alicycliphilus denitrificans BC] Length = 442 Score = 41.9 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 7/76 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP R L + S V+ L+E L G + + V+ +Q GL Sbjct: 374 PWP----RDLQPLSRS-DVKTLQELLNARGL--DAGTPDGVAGPATRAGVRRYQQSLGLP 426 Query: 153 PSGMVDSSTLEAMNVP 168 G L+ + P Sbjct: 427 ADGYATRELLQQLQEP 442 >gi|284049125|ref|YP_003399464.1| ErfK/YbiS/YcfS/YnhG family protein [Acidaminococcus fermentans DSM 20731] gi|283953346|gb|ADB48149.1| ErfK/YbiS/YcfS/YnhG family protein [Acidaminococcus fermentans DSM 20731] Length = 241 Score = 41.9 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 45/182 (24%), Gaps = 54/182 (29%) Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV---------DRQ 227 QV + VLV+ L + V +G+ D Sbjct: 86 QVAPQPAAEQPLVPGKKYAVLVDKSDHKLYLKDGDTVVRTWGCAIGKGGLGQKERRGDNM 145 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 TP+ RI+ I W ++ P +L + + + + Sbjct: 146 TPVGTFRIDEIDDASGWTHDFGDGNGEI--QGAYGPWFLSLD----------TEDLSQGN 193 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 W + +H T +P + GCVR+ Sbjct: 194 W------------------------------DGIGIHGTHDPASIGTD---ASEGCVRLD 220 Query: 348 NI 349 N Sbjct: 221 NA 222 >gi|254282058|ref|ZP_04957026.1| glycosidase family protein [gamma proteobacterium NOR51-B] gi|219678261|gb|EED34610.1| glycosidase family protein [gamma proteobacterium NOR51-B] Length = 395 Score = 41.9 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 5/83 (6%) Query: 87 DILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 I G + +P + L V +++E LI G + SA++ F Sbjct: 316 RIAGAGALKQSIPKDQVRL--RRADVVQMQELLIDKGF--DAGVPDGLLGPTTRSALREF 371 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q+ GL G D TL + V Sbjct: 372 QISAGLVGDGFPDRKTLTQLGVD 394 >gi|171921109|gb|ACB59207.1| matrixin family protein [Brassica oleracea] Length = 383 Score = 41.9 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + ++++ G + + S FD +++AV+++Q L+ +G +D TL Sbjct: 55 GMKVDGLYKIKQYFQHFGYIPQTLPGNFSDDFDDILKNAVEMYQRNFKLNITGELDELTL 114 Query: 163 EAMNVP 168 + + +P Sbjct: 115 QHVVIP 120 >gi|220908800|ref|YP_002484111.1| OpcA protein [Cyanothece sp. PCC 7425] gi|219865411|gb|ACL45750.1| OpcA protein [Cyanothece sp. PCC 7425] Length = 456 Score = 41.9 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 2/58 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 ++ L G + E+A++ Q + L G L+ + + R Sbjct: 63 QQLLAALGFY--RGPVDGILGPQTEAAIRAAQTTYKLPVDGTSSPELLQKLQQALAER 118 >gi|257094051|ref|YP_003167692.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046575|gb|ACV35763.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 162 Score = 41.9 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 8/61 (13%) Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPT 362 N + R Y+H +P+ R + GC+R+ N +L + TP Sbjct: 104 RNRLGEVDTM---RRYVYIHGSPDSTPMG---RPGSIGCIRMHNADIIELFDLVAPYTPV 157 Query: 363 W 363 Sbjct: 158 D 158 >gi|254471723|ref|ZP_05085124.1| putative hemagglutinin protein [Pseudovibrio sp. JE062] gi|211958925|gb|EEA94124.1| putative hemagglutinin protein [Pseudovibrio sp. JE062] Length = 1481 Score = 41.9 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S +V+++++ L+ G + A+K Q R G++ +G D + A+ Sbjct: 1421 SPTVKKMQQALLNMGYDPGNP--DGVMGPNTRRAIKSLQARLGMEATGEPDQRLITALA 1477 >gi|293189660|ref|ZP_06608377.1| putative peptidoglycan binding domain protein [Actinomyces odontolyticus F0309] gi|292821398|gb|EFF80340.1| putative peptidoglycan binding domain protein [Actinomyces odontolyticus F0309] Length = 344 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%) Query: 100 RPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R G S V +L L G + FD +A+K +Q L SG + Sbjct: 98 RAFEEGMSDGEDVTQLETALSELGYF--EATPNAHFDWNTIAAIKRWQKALSLPQSGSLP 155 Query: 159 SSTL 162 T+ Sbjct: 156 LGTV 159 >gi|268316180|ref|YP_003289899.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodothermus marinus DSM 4252] gi|262333714|gb|ACY47511.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodothermus marinus DSM 4252] Length = 215 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 41/171 (23%), Gaps = 52/171 (30%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-----------DRQTPILHSRINRIM 239 Y++V+ G++ G QTP + + Sbjct: 69 PAGAYLVVSTTENHFWLYVGGRLIREGRCSTGSYVYLKGSGGRSWLFQTPRGQFFVQSKI 128 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P ++ GK + P R Sbjct: 129 VNPVWHKPDWAFVEE-----------------------GKPIPP----------PGSPER 155 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + G + + + +H T L T GCVR+ + Sbjct: 156 YEYG---VLGRYALAIGN--GYLIHGTLYQRLLG---LPVTHGCVRLGDAD 198 >gi|297201187|ref|ZP_06918584.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197713739|gb|EDY57773.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 176 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++ L G+L S G+ F + +A +Q + + G T A Sbjct: 71 QKILWADGELAAS-GIDGDFGSNTAAATARWQTKFQVPSDGSAGQQTWTAAG 121 >gi|188582710|ref|YP_001926155.1| lytic murein transglycosylase [Methylobacterium populi BJ001] gi|179346208|gb|ACB81620.1| lytic murein transglycosylase [Methylobacterium populi BJ001] Length = 400 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++RL+ L G + AV+ +Q+R GL G + LE + Sbjct: 338 GPGLKRLQAGLAAQGLYAGE--QDGRAGPKLREAVRQYQIREGLPADGYARPALLERLER 395 >gi|927023|gb|AAA99948.1| senescence-specific protein [Cucumis sativus] Length = 126 Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 103 HLGNSSVSVQRLRERLIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHGLD 152 HLG++ + ++++ L G + + FD +ESA+K +Q H L Sbjct: 55 HLGDTKQGIHQIKKYLQRFGYITTNIQKHSNPIFDDTFDHILESALKTYQTNHNLA 110 >gi|154245354|ref|YP_001416312.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154159439|gb|ABS66655.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 239 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 27/83 (32%), Gaps = 4/83 (4%) Query: 86 QDILSRGGWPELPIRPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 + S G ++ G+ +S + +++ L G + +A++ Sbjct: 151 RPPASVGAGTDVTGAVRPPGDVPASPRLLAVQKALAKLGY--GPLKVDGRPGGETRTAIQ 208 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 FQ + G V + + Sbjct: 209 RFQRDRNMTADGEVSDKLVRELA 231 >gi|148656278|ref|YP_001276483.1| ErfK/YbiS/YcfS/YnhG family protein [Roseiflexus sp. RS-1] gi|148568388|gb|ABQ90533.1| ErfK/YbiS/YcfS/YnhG family protein [Roseiflexus sp. RS-1] Length = 398 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 9/66 (13%) Query: 309 ASTKIEFYSRN------NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 + + +H T LF R + GCV + + WL + P Sbjct: 334 GKYWVVPNVPHVMYFSGGVALHGTYWHNLFGTGARP-SHGCVNL--PLKSAAWLYEWAPV 390 Query: 363 WSRYHI 368 + + Sbjct: 391 GTPVRV 396 >gi|323135715|ref|ZP_08070798.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322398806|gb|EFY01325.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 176 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 13/81 (16%) Query: 315 FYSRNNTYMHDTPEPILFNNVV-RFETSGCVR--VRNIIDLDVWLLKDTPTWSRY---HI 368 F+S +H F + R + GCVR V N L W+ ++ S Sbjct: 86 FFSPRGLAIHG-----SFERGLGRPASHGCVRLSVANAQKLYQWV-EEQGGASIEIVGET 139 Query: 369 EEVVKTRKTTPVK-LATEVPV 388 + + PV Sbjct: 140 RSAARRGPRLERPRFSRRPPV 160 >gi|311031912|ref|ZP_07710002.1| carboxyl-terminal protease [Bacillus sp. m3-13] Length = 492 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L L +S V+ ++ L G F E AVK FQ + L SG VDS T Sbjct: 405 LALDANSEKVKNVQVMLKGLGF--DPGREDGYFSKETEDAVKSFQAENDLSTSGKVDSQT 462 Query: 162 LEAMNV 167 E + Sbjct: 463 AEQLQA 468 >gi|86359710|ref|YP_471601.1| hypothetical protein RHE_PA00005 [Rhizobium etli CFN 42] gi|86283812|gb|ABC92874.1| hypothetical protein RHE_PA00005 [Rhizobium etli CFN 42] Length = 217 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 96 ELPIRPLHLGNSSV---SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P++ L GNS V +++ L+ G ++ DA + Q +GL Sbjct: 143 PMPLKTL-PGNSDKFRRIVIQVQTALVAFGYF--GGPITGQVDAATRVGLNKMQDAYGLK 199 Query: 153 PSGMVDSSTLEAMNVP 168 +G + L A + Sbjct: 200 VTGTITPQVLTAFGIS 215 >gi|302551254|ref|ZP_07303596.1| predicted protein [Streptomyces viridochromogenes DSM 40736] gi|302468872|gb|EFL31965.1| predicted protein [Streptomyces viridochromogenes DSM 40736] Length = 606 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 16/110 (14%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + +G V+ ++ L G + F V FQ+ GL P+G+V+ Sbjct: 430 TIAMGEHDACVKEVQRLLHTKG---ADIDVDGDFGPQTLRRVTAFQVLAGLQPNGVVEEP 486 Query: 161 TLEAMNVP-------VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 T +A+ ++RQ R++++ + + + + Sbjct: 487 TKKALYTSRVRMTVWPQEKVRQ------RVREVFPEAPDKAVAIADCQSF 530 >gi|241896161|ref|ZP_04783457.1| YbfG like protein [Weissella paramesenteroides ATCC 33313] gi|241870580|gb|EER74331.1| YbfG like protein [Weissella paramesenteroides ATCC 33313] Length = 257 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 10/100 (10%) Query: 74 TIAQTEKAIAFYQDI--LSRG----GWPELPI--RPLHLGNSSVSVQRLRERLIISGDLD 125 TI + + I ++ G + L G S V+ ++ G Sbjct: 35 TIYALREGLQHEVGISPVASGFGEATENAVSKVLGKLKNGYSGNLVKLIQGAFWAKG--I 92 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L + SA++ Q + G+ G + + ++A+ Sbjct: 93 SPSALDGKYTNETTSAIENLQRQAGVTADGKMTTQLMKAL 132 >gi|222110881|ref|YP_002553145.1| lytic murein transglycosylase [Acidovorax ebreus TPSY] gi|221730325|gb|ACM33145.1| lytic murein transglycosylase [Acidovorax ebreus TPSY] Length = 466 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 7/75 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP R L + S V+ L+E L G + + V+ +Q GL Sbjct: 399 WP----RELQPLSRS-EVRALQEALNARGL--DTGTPDGVAGPATRAGVRRYQQSVGLPA 451 Query: 154 SGMVDSSTLEAMNVP 168 G L+ + P Sbjct: 452 DGYATRELLQRLLTP 466 >gi|159038429|ref|YP_001537682.1| peptidoglycan binding domain-containing protein [Salinispora arenicola CNS-205] gi|157917264|gb|ABV98691.1| Peptidoglycan-binding domain 1 protein [Salinispora arenicola CNS-205] Length = 268 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 15/46 (32%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 G + + +K FQ GL G++ T +A Sbjct: 221 YLRRAGSDGLYGPEHQELIKAFQADQGLARDGLLGRLTWDAAYHNP 266 >gi|319795776|ref|YP_004157416.1| erfk/ybis/ycfs/ynhg family protein [Variovorax paradoxus EPS] gi|315598239|gb|ADU39305.1| ErfK/YbiS/YcfS/YnhG family protein [Variovorax paradoxus EPS] Length = 508 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 12/66 (18%) Query: 309 ASTKIEFYSRN---------NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 + I + + ++H TP P F + GCV + N DL L K Sbjct: 317 GALPINYPNPYDVRRGRTGSGIWLHGTP-PQQFARAPLA-SDGCVVMANP-DLKQLLRKV 373 Query: 360 TPTWSR 365 + Sbjct: 374 QIGATP 379 >gi|310825691|ref|YP_003958048.1| muramoyl-pentapeptide carboxypeptidase [Eubacterium limosum KIST612] gi|308737425|gb|ADO35085.1| muramoyl-pentapeptide carboxypeptidase [Eubacterium limosum KIST612] Length = 244 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 9/95 (9%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 ET A + Y DI + G + L S V+ ++ +L G + Sbjct: 27 GPETQAAVRRTQEGY-DIEADGIAGPVTKEHL-----SKQVRGIQAQLNAKG---CGCPV 77 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++AVK Q GL G+V +T A+ Sbjct: 78 DGLPGPLTDAAVKTLQADFGLVADGIVGYNTEAAL 112 >gi|260662383|ref|ZP_05863278.1| cell surface protein [Lactobacillus fermentum 28-3-CHN] gi|260553074|gb|EEX26017.1| cell surface protein [Lactobacillus fermentum 28-3-CHN] Length = 216 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 20/145 (13%) Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMID-----EKGKEVF 282 ++ + I+ + P D+ + ++ YL DN + GK Sbjct: 65 VMRTPIDWQKSSETVAYPDVNAHPDLWIKVSKKKQRVYLIDNGKILYTMYCSTGTGKNDT 124 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN--------N 334 + E + + Q G+ A + + + H P N Sbjct: 125 PTGTYYIQAERGTYFYSQQSGEG---AHYWVSWLNHGEYLFHSVPTDESGNYKLSEAKQL 181 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKD 359 + + GCVR+ W ++ Sbjct: 182 GKKAASHGCVRLSVPD--AKWFYEN 204 >gi|225628550|ref|ZP_03786584.1| lytic murein transglycosylase [Brucella ceti str. Cudo] gi|237816592|ref|ZP_04595584.1| lytic murein transglycosylase [Brucella abortus str. 2308 A] gi|225616396|gb|EEH13444.1| lytic murein transglycosylase [Brucella ceti str. Cudo] gi|237787405|gb|EEP61621.1| lytic murein transglycosylase [Brucella abortus str. 2308 A] Length = 429 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 376 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 428 >gi|225020851|ref|ZP_03710043.1| hypothetical protein CORMATOL_00859 [Corynebacterium matruchotii ATCC 33806] gi|224946333|gb|EEG27542.1| hypothetical protein CORMATOL_00859 [Corynebacterium matruchotii ATCC 33806] Length = 369 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 18/124 (14%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LG--------- 105 + + + + + + I++ G E+ +R L LG Sbjct: 13 PDHAIYNADTLFDDELEAALRGFQQARGIIASGEINEMTLRVLREASYELGARVLNYQPH 72 Query: 106 --NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 S V +L+++L G + F + A+ +QM +GL+ G+ +T+ Sbjct: 73 NEMSGDDVVQLQQQLQELGFYS--DRIDGHFGEHTYRALLKYQMNYGLNMDGICGPNTIR 130 Query: 164 AMNV 167 ++N Sbjct: 131 SLNR 134 >gi|84500741|ref|ZP_00998990.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanicola batsensis HTCC2597] gi|84391694|gb|EAQ04026.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanicola batsensis HTCC2597] Length = 206 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 50/182 (27%), Gaps = 46/182 (25%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQ 227 +R + + +LV+I + +L E+ + V + Sbjct: 50 PAVRRNISSFRSLDWRPYFSNTRNG-AILVDIDSRALHYWSEDQSIYRLYPSSVPVSEEL 108 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T + + + + P W ++ +++P + Sbjct: 109 TRRGRTSVVQKVVKPTWRPTPNMR--------KRNP-----------------------E 137 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 W + + N + + Y +H T + R ++GC+ + Sbjct: 138 WPA-------VVEGGAPDNPLGPLALYL--GWTYYRIHGTHDTRKIG---RRSSNGCIGL 185 Query: 347 RN 348 N Sbjct: 186 YN 187 >gi|158311974|ref|YP_001504482.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Frankia sp. EAN1pec] gi|158107379|gb|ABW09576.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Frankia sp. EAN1pec] Length = 361 Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 13/78 (16%) Query: 101 PLHLGNSSVSVQRLRERLII-------SGDLDPSKGLSVAFDAYVESAVKLFQM----RH 149 L G S V L+ L I +GD A+ A + V Q Sbjct: 275 TLREGMSGPEVVTLQNALNIIFGHEAPTGD-PYRLAPDGAYGARTTARVASLQRYATPWF 333 Query: 150 G-LDPSGMVDSSTLEAMN 166 G + G+ +T + Sbjct: 334 GRIPEDGVCGPNTWRKIG 351 >gi|259417667|ref|ZP_05741586.1| lytic murein transglycosylase [Silicibacter sp. TrichCH4B] gi|259346573|gb|EEW58387.1| lytic murein transglycosylase [Silicibacter sp. TrichCH4B] Length = 398 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G S ++ L+ RL G + A AV+ Q R GL Sbjct: 328 GAPVYDAGNSEQGLSGDQMKELQRRLQARGH--DVGDVDGILGANTRLAVQAEQKRLGLP 385 Query: 153 PSGMVDSSTLEAM 165 L A+ Sbjct: 386 ADAWPTPDLLNAL 398 >gi|288574492|ref|ZP_06392849.1| ErfK/YbiS/YcfS/YnhG family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570233|gb|EFC91790.1| ErfK/YbiS/YcfS/YnhG family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 135 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +++ + +H T E L + GC+R++N L Sbjct: 79 IRLKTPPWSGIGIHGTDEGHLSEIGT-DASHGCIRMKNEDLL 119 >gi|256395922|ref|YP_003117486.1| peptidoglycan-binding protein [Catenulispora acidiphila DSM 44928] gi|256362148|gb|ACU75645.1| Peptidoglycan-binding domain 1 protein [Catenulispora acidiphila DSM 44928] Length = 389 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 7/74 (9%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLD----P 153 L LG+S +V +L++ L + +S +D+ + AV+ FQ + P Sbjct: 313 SLKLGSSGAAVTQLQQNLRRWQRSSFGWSTIQVSGNYDSATQDAVQSFQDNNPGTSPPDP 372 Query: 154 SGMVDSSTLEAMNV 167 +G+ +T +A+ Sbjct: 373 AGVYGPATDQALRK 386 >gi|145594170|ref|YP_001158467.1| peptidoglycan binding domain-containing protein [Salinispora tropica CNB-440] gi|145303507|gb|ABP54089.1| Peptidoglycan-binding domain 1 protein [Salinispora tropica CNB-440] Length = 270 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 22/91 (24%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + +A + L+R GWP + LR+ G + Sbjct: 200 RQWLAMWTKQLTRRGWPAGKGKRY-----------LRK-----------NGHDGLYGPEH 237 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + FQ GL G++ +T +A Sbjct: 238 RELITAFQADQGLSRDGLLGRNTWDAAYRNP 268 >gi|311267841|ref|XP_003131763.1| PREDICTED: matrix metalloproteinase-28-like [Sus scrofa] Length = 521 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L+ S A++ FQ L SG++D +TL M P Sbjct: 40 LEKYGYLNEQVPQSPTSSLRFSKAIREFQWVSQLPISGVLDPATLRQMMRP 90 >gi|254562448|ref|YP_003069543.1| membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens DM4] gi|254269726|emb|CAX25698.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens DM4] Length = 393 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 WP R ++RL+ L G + AV+ +Q+R Sbjct: 320 ALAAPWPNGAARL-----DGPGLKRLQVGLAAKGLYAGE--QDGRAGPKLREAVRQYQIR 372 Query: 149 HGLDPSGMVDSSTLEAMNVPV 169 GL G + LE + Sbjct: 373 EGLPADGYARPALLERLEGRP 393 >gi|221133642|ref|ZP_03559947.1| lytic murein transglycosylase [Glaciecola sp. HTCC2999] Length = 398 Score = 41.6 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L+ L G G+ + +A++ FQ+ +G+ G E Sbjct: 341 KALQRHLQALGY--DVNGIDGVIGSGTRAAIRAFQLDNGMIADGFAHPEVFEKAAQ 394 >gi|78044022|ref|YP_360720.1| putative peptidoglycan binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996137|gb|ABB15036.1| putative peptidoglycan binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 168 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 2/56 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V ++ L + + + + + ++ FQ + G+V T Sbjct: 50 VLAIQRMLKDTPY--GYSSVDGYYGSLTQKGIEDFQRSEKIQVDGIVGKVTWGEFQ 103 >gi|126667790|ref|ZP_01738757.1| hypothetical protein MELB17_09083 [Marinobacter sp. ELB17] gi|126627738|gb|EAZ98368.1| hypothetical protein MELB17_09083 [Marinobacter sp. ELB17] Length = 643 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ L+ L SG + + SA+K FQ +G P+G D ST+ + Sbjct: 585 VKDLQRTLTASGY--NAGPIDGVIGRATVSALKQFQHDNGTTPTGTQDYSTIRLLKA 639 >gi|159170556|gb|ABW96008.1| matrix metalloproteinase [Glycine max] Length = 393 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 17/107 (15%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L G ++ S + +FD + SA+K +Q L +G ++ ++ M +R Sbjct: 114 LSDYGYIESSGPFNDSFDQEIISAIKTYQNFSNLQVTGGLNKELIQQML---SIRCGVPD 170 Query: 178 VNLMR-------------IKKLLEQKMGLRYV-LVNIPAASLEAVEN 210 VN + + + ++ IP + + Sbjct: 171 VNFDYNSTDDNISYPKAGHRWFPNRNLTYGFLPENQIPDNMTKVFRD 217 >gi|218438479|ref|YP_002376808.1| OpcA protein [Cyanothece sp. PCC 7424] gi|218171207|gb|ACK69940.1| OpcA protein [Cyanothece sp. PCC 7424] Length = 456 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 2/76 (2%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 ++ L G + +A+K Q +GL+ +G + L + I Sbjct: 60 QQLLTALGFYS--GPIDGIAGPRTTAAIKAAQKAYGLEVTGKSNPQLLTKLQEAFAQAIE 117 Query: 175 QLQVNLMRIKKLLEQK 190 + ++ K L Sbjct: 118 EGKLTSSDQKSLQPYP 133 >gi|187477736|ref|YP_785760.1| lytic murein transglycosylase [Bordetella avium 197N] gi|115422322|emb|CAJ48846.1| putative lytic murein transglycosylase [Bordetella avium 197N] Length = 405 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 12/94 (12%) Query: 81 AIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 AIA D L G WP G S + ++E L+ G Sbjct: 319 AIAHLSDRLRGGLPFARPWPTDDA-----GLSRAERKEIQELLVARGY--DIGMPDGVIG 371 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 A A++ Q GL G TL+A+ Sbjct: 372 ARTRQALQSVQRELGLPDDGRAGQRTLKALRAQP 405 >gi|254711939|ref|ZP_05173750.1| Putative peptidoglycan binding domain 1 [Brucella ceti M644/93/1] gi|261319579|ref|ZP_05958776.1| lytic Murein transglycosylase [Brucella ceti M644/93/1] gi|261292269|gb|EEX95765.1| lytic Murein transglycosylase [Brucella ceti M644/93/1] Length = 412 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 411 >gi|254699386|ref|ZP_05161214.1| Putative peptidoglycan binding domain 1 [Brucella suis bv. 5 str. 513] gi|261749835|ref|ZP_05993544.1| lytic Murein transglycosylase [Brucella suis bv. 5 str. 513] gi|261739588|gb|EEY27514.1| lytic Murein transglycosylase [Brucella suis bv. 5 str. 513] Length = 412 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 411 >gi|148558066|ref|YP_001257145.1| putative transglycosylase [Brucella ovis ATCC 25840] gi|148369351|gb|ABQ62223.1| putative transglycosylase [Brucella ovis ATCC 25840] Length = 412 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 411 >gi|92119350|ref|YP_579079.1| peptidoglycan binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91802244|gb|ABE64619.1| Peptidoglycan-binding domain 1 [Nitrobacter hamburgensis X14] Length = 522 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ ++ LI G L A+ +FQ + G+ SG +D+ T+ ++ V Sbjct: 338 DDIRVVQRVLIERGLLHGEA--DGVLGPETREAITVFQRQQGIQMSGSIDARTVSSLGVS 395 >gi|62317029|ref|YP_222882.1| transglycosylase [Brucella abortus bv. 1 str. 9-941] gi|83269023|ref|YP_418314.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189022296|ref|YP_001932037.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19] gi|254695217|ref|ZP_05157045.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 3 str. Tulya] gi|254698316|ref|ZP_05160144.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 2 str. 86/8/59] gi|254706370|ref|ZP_05168198.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis M163/99/10] gi|254711340|ref|ZP_05173151.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis B2/94] gi|254731759|ref|ZP_05190337.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 4 str. 292] gi|256014866|ref|YP_003104875.1| membrane-bound lytic murein transglycosylase B [Brucella microti CCM 4915] gi|256030031|ref|ZP_05443645.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis M292/94/1] gi|256158203|ref|ZP_05456112.1| Putative peptidoglycan binding domain 1 [Brucella ceti M490/95/1] gi|256252855|ref|ZP_05458391.1| Putative peptidoglycan binding domain 1 [Brucella ceti B1/94] gi|256256672|ref|ZP_05462208.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 9 str. C68] gi|260166918|ref|ZP_05753729.1| membrane-bound lytic murein transglycosylase B [Brucella sp. F5/99] gi|260544265|ref|ZP_05820086.1| lytic murein transglycosylase [Brucella abortus NCTC 8038] gi|260759523|ref|ZP_05871871.1| lytic Murein transglycosylase [Brucella abortus bv. 4 str. 292] gi|260762767|ref|ZP_05875099.1| lytic Murein transglycosylase [Brucella abortus bv. 2 str. 86/8/59] gi|260882916|ref|ZP_05894530.1| lytic Murein transglycosylase [Brucella abortus bv. 9 str. C68] gi|261215579|ref|ZP_05929860.1| lytic Murein transglycosylase [Brucella abortus bv. 3 str. Tulya] gi|261219942|ref|ZP_05934223.1| lytic Murein transglycosylase [Brucella ceti B1/94] gi|261313816|ref|ZP_05953013.1| lytic Murein transglycosylase [Brucella pinnipedialis M163/99/10] gi|261318943|ref|ZP_05958140.1| lytic Murein transglycosylase [Brucella pinnipedialis B2/94] gi|261756303|ref|ZP_06000012.1| lytic Murein transglycosylase [Brucella sp. F5/99] gi|265987053|ref|ZP_06099610.1| lytic Murein transglycosylase [Brucella pinnipedialis M292/94/1] gi|265996715|ref|ZP_06109272.1| lytic Murein transglycosylase [Brucella ceti M490/95/1] gi|294853097|ref|ZP_06793769.1| transglycosylase [Brucella sp. NVSL 07-0026] gi|297250027|ref|ZP_06933728.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62197222|gb|AAX75521.1| hypothetical transglycosylase [Brucella abortus bv. 1 str. 9-941] gi|82939297|emb|CAJ12235.1| Putative peptidoglycan binding domain 1 [Brucella melitensis biovar Abortus 2308] gi|189020870|gb|ACD73591.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19] gi|255997526|gb|ACU49213.1| membrane-bound lytic murein transglycosylase B [Brucella microti CCM 4915] gi|260097536|gb|EEW81410.1| lytic murein transglycosylase [Brucella abortus NCTC 8038] gi|260669841|gb|EEX56781.1| lytic Murein transglycosylase [Brucella abortus bv. 4 str. 292] gi|260673188|gb|EEX60009.1| lytic Murein transglycosylase [Brucella abortus bv. 2 str. 86/8/59] gi|260872444|gb|EEX79513.1| lytic Murein transglycosylase [Brucella abortus bv. 9 str. C68] gi|260917186|gb|EEX84047.1| lytic Murein transglycosylase [Brucella abortus bv. 3 str. Tulya] gi|260918526|gb|EEX85179.1| lytic Murein transglycosylase [Brucella ceti B1/94] gi|261298166|gb|EEY01663.1| lytic Murein transglycosylase [Brucella pinnipedialis B2/94] gi|261302842|gb|EEY06339.1| lytic Murein transglycosylase [Brucella pinnipedialis M163/99/10] gi|261736287|gb|EEY24283.1| lytic Murein transglycosylase [Brucella sp. F5/99] gi|262551012|gb|EEZ07173.1| lytic Murein transglycosylase [Brucella ceti M490/95/1] gi|264659250|gb|EEZ29511.1| lytic Murein transglycosylase [Brucella pinnipedialis M292/94/1] gi|294818752|gb|EFG35752.1| transglycosylase [Brucella sp. NVSL 07-0026] gi|297173896|gb|EFH33260.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 412 Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 411 >gi|306845309|ref|ZP_07477884.1| lytic murein transglycosylase [Brucella sp. BO1] gi|306274225|gb|EFM56037.1| lytic murein transglycosylase [Brucella sp. BO1] Length = 412 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 411 >gi|224541968|ref|ZP_03682507.1| hypothetical protein CATMIT_01141 [Catenibacterium mitsuokai DSM 15897] gi|224525108|gb|EEF94213.1| hypothetical protein CATMIT_01141 [Catenibacterium mitsuokai DSM 15897] Length = 502 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + L + G F V A+K F+ HGL G++ Sbjct: 426 IIVMERLLEVLGY--NPGRTDGYFSQGVSDALKRFEQDHGLTVDGVL 470 >gi|19223862|gb|AAL86364.1|AF332574_1 putative lytic transglycosylase [Desulfovibrio gigas] Length = 313 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 9/128 (7%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S V+ ++ RL G L + A++ ++ GL +G + L + Sbjct: 22 SALVRDVQHRLKTLGYL--EGKVDGVAGPGTRLAIRRYEHVSGLPLTGKATETLLTRLRT 79 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 Q+ V E + Y + P EAV K L + Sbjct: 80 EKRHAPPQVTV-------PPEPEGPTVYRSIVTPERLAEAVVFYKTNLPLLRRIEAEYGV 132 Query: 228 TPILHSRI 235 P + + + Sbjct: 133 PPPVTTGL 140 >gi|42522457|ref|NP_967837.1| hypothetical protein Bd0886 [Bdellovibrio bacteriovorus HD100] gi|39574989|emb|CAE78830.1| hypothetical protein predicted by Glimmer/Critica [Bdellovibrio bacteriovorus HD100] Length = 486 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 58/192 (30%), Gaps = 28/192 (14%) Query: 207 AVENGKVGLRSTVIVGRVDR--QTPILHSRINRIM--------FNPYWVIPRSIIQKDMM 256 +E V R G+ D +T + HSRI+ + F P W P I+ Sbjct: 158 VMETDMVVGRPEEGDGQDDNAYKTWVGHSRISEWVKFYQDGKAFYPRWYTPGQNIKDIPD 217 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 + Y+ +E+GK W + + G+ + I Sbjct: 218 PVTDSMSLYMGARKWLRKNEQGKTSNYGAFGWYAAKLT------PAGENGGVNYQWIHGT 271 Query: 317 SRNNTYMHDTPEP------ILFNNVVRFETSGCVRVRN-IIDLDVWLLKDTPTWSRYHIE 369 D +P + N + GC R+ N + LL P Y + Sbjct: 272 MGWGK---DGSKPIEITRMKMINFFSNPGSHGCTRLENQAVAYMRHLLG--PGTDIYRVY 326 Query: 370 EVVKTRKTTPVK 381 +R+ P Sbjct: 327 AREASREAAPFS 338 >gi|220924768|ref|YP_002500070.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium nodulans ORS 2060] gi|219949375|gb|ACL59767.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium nodulans ORS 2060] Length = 249 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 20/145 (13%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE--------- 96 + +A + I + PI + +A ++ A + QD W Sbjct: 109 PYPEAQVAAVIA-LARDILARWPIRADRVLAHSDVAPSRKQDPGEGFPWERLHRAGVGHW 167 Query: 97 LPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +P P+ G++ ++ L+ + G + ++ FD + + V+ FQ Sbjct: 168 VPPAPIRDGRFFAEGDAGQPIEALQAMFALYGY---DQPVTGTFDVRMRAVVEAFQRHFR 224 Query: 151 -LDPSGMVDSSTLEAMNVPVDLRIR 174 G+ D+ST+ + + R Sbjct: 225 PARVDGVADASTITTLRDLIAARAA 249 >gi|13476355|ref|NP_107925.1| hypothetical protein mlr7650 [Mesorhizobium loti MAFF303099] gi|14027116|dbj|BAB54070.1| mlr7650 [Mesorhizobium loti MAFF303099] Length = 270 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V++++ L + A++ +Q + GL+ SG +D+ L+ + Sbjct: 101 DPVVEQVQGILKDLDFYS--GTVDGISGPNTRKAIQAYQQKVGLNASGEIDALLLDQLGA 158 Query: 168 PVD 170 Sbjct: 159 TPK 161 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + +++ L G + L A ++A+K FQ GL +G D Sbjct: 208 DPRIVKIQAGLKAFG--NDDMQLDGVVGARTKAAIKEFQSLFGLPQTGEPDE 257 >gi|229551218|ref|ZP_04439943.1| peptidoglycan binding domain protein [Lactobacillus rhamnosus LMS2-1] gi|258541025|ref|YP_003175524.1| peptidoglycan-binding protein [Lactobacillus rhamnosus Lc 705] gi|229315381|gb|EEN81354.1| peptidoglycan binding domain protein [Lactobacillus rhamnosus LMS2-1] gi|257152701|emb|CAR91673.1| Peptidoglycan-binding protein [Lactobacillus rhamnosus Lc 705] Length = 701 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 14/129 (10%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKE---TIAQTEKAIAFYQDILSRG-GWPELPI---- 99 V + + V P + TI + I + G G+ + Sbjct: 9 VQKWLNKTYSSVSGFT--TAPENGQTGWPTIYSLRMGLQHEIGISAIGEGFGDATKTALA 66 Query: 100 ---RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G Q ++ G ++P + F E A K Q G+ +G+ Sbjct: 67 SVVGSLKPGYKGNIAQLIQGAFWCKG-INPGSDFNQDFSDATEQAFKTLQQNAGITANGV 125 Query: 157 VDSSTLEAM 165 V + + A+ Sbjct: 126 VTVNLMAAL 134 >gi|184156152|ref|YP_001844492.1| cell surface protein [Lactobacillus fermentum IFO 3956] gi|183227496|dbj|BAG28012.1| cell surface protein [Lactobacillus fermentum IFO 3956] Length = 231 Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 43/145 (29%), Gaps = 20/145 (13%) Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMID-----EKGKEVF 282 I+ + I+ + P D+ + ++ YL DN + GK Sbjct: 80 IMRTPIDWQKSSETVAYPDVNAHPDLWIKVSKKKQRVYLIDNGKILYTMYCSTGTGKNDT 139 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN--------N 334 + E + + Q G+ A + + + H P N Sbjct: 140 PTGTYYIQAERGTYFYSQQSGEG---AHYWVSWLNHGEYLFHSVPTDESGNYKLSEAKQL 196 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKD 359 + + GCVR+ W ++ Sbjct: 197 GKKAASHGCVRLSVPD--AKWFYEN 219 >gi|260757107|ref|ZP_05869455.1| LOW QUALITY PROTEIN: lytic Murein transglycosylase [Brucella abortus bv. 6 str. 870] gi|260677215|gb|EEX64036.1| LOW QUALITY PROTEIN: lytic Murein transglycosylase [Brucella abortus bv. 6 str. 870] Length = 300 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 247 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 299 >gi|228943446|ref|ZP_04105890.1| Cell wall biogenesis enzyme (N-terminal domain to N-Acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976299|ref|ZP_04136770.1| Cell wall biogenesis enzyme (N-terminal domain to N-Acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783403|gb|EEM31511.1| Cell wall biogenesis enzyme (N-terminal domain to N-Acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816226|gb|EEM62407.1| Cell wall biogenesis enzyme (N-terminal domain to N-Acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 277 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V L+ LI G ++ FD K+FQ + L P+G+V+ + Sbjct: 6 TLKFGSTGYYVTVLQLNLIGLGVNYEKLTITGFFDEKTNKYTKIFQEKTKLKPNGIVEVN 65 Query: 161 TLEAMNVPV---DLRIRQLQVNLMRIKKLL 187 T +++ V +++ + + ++ + Sbjct: 66 TWKSLFENVILIQKKLQSIGIYFGQLDGIF 95 >gi|227512734|ref|ZP_03942783.1| periplasmic protease [Lactobacillus buchneri ATCC 11577] gi|227084059|gb|EEI19371.1| periplasmic protease [Lactobacillus buchneri ATCC 11577] Length = 344 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------VDLRIRQLQVNLMRIKK 185 ++ AV+ FQ RH L +G V+ +T M +D + L+ N + +K Sbjct: 147 NKYNQATYYAVRQFQSRHHLKVTGNVNEATWLKMGFTKTSWTEIDSYVAPLKANAWQGRK 206 Query: 186 -LLEQKMGLRYVLVNIP 201 ++ + Y + P Sbjct: 207 AHIDAMIHQAYRYMGKP 223 >gi|297744706|emb|CBI37968.3| unnamed protein product [Vitis vinifera] Length = 131 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ +Q++++ L G L S+ + FD +ESA+K+FQ + L+ Sbjct: 20 KKGDKMEGIQKVKQYLQRYGYLSSTHYSQTNTDEFDDALESAIKVFQTFYHLN 72 >gi|239817408|ref|YP_002946318.1| ErfK/YbiS/YcfS/YnhG family protein [Variovorax paradoxus S110] gi|239803985|gb|ACS21052.1| ErfK/YbiS/YcfS/YnhG family protein [Variovorax paradoxus S110] Length = 374 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 12/66 (18%) Query: 309 ASTKIEFYSRN---------NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 + I + + ++H TP P F+ + GCV + N DL L K Sbjct: 181 GALPINYPNPYDVRRGKTGSGIWLHGTP-PQQFSRAPLA-SDGCVVMANP-DLKQLLRKV 237 Query: 360 TPTWSR 365 + Sbjct: 238 QIGATP 243 >gi|147768132|emb|CAN60605.1| hypothetical protein VITISV_020064 [Vitis vinifera] Length = 149 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ +Q++++ L G L S+ + FD +ESA+K+FQ + L+ Sbjct: 38 KKGDKMEGIQKVKQYLQRYGYLSSTHYSQTNTDEFDDALESAIKVFQTFYHLN 90 >gi|319784577|ref|YP_004144053.1| peptidoglycan-binding domain 1 protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170465|gb|ADV14003.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 265 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 48/155 (30%), Gaps = 20/155 (12%) Query: 20 LPMGLSLVEKPIHASVLDEIINESY----HSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + +G + P+ + + +++ F + A + P + + Sbjct: 23 VAVGGMISRNPVLVGGSTAFLVTLFYVSANALWYQPFPHAGAFFATRSIAGFPHATPDEP 82 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 T +I+ G P V++++ L + Sbjct: 83 ETTF-------NIVRPSGAPAPIKG-------DPVVEQVQGILKDLDFYS--GTVDGISG 126 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 A++ +Q + GL+ SG +D+ L+ + Sbjct: 127 PNTRKAIQDYQQKVGLNTSGEIDALLLDQLGATPK 161 Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + +++ L G + L A ++A+K FQ GL +G D Sbjct: 203 DARIVKIQAGLKAFG--NDDMQLDGVVGARTKAAIKEFQSLFGLPQTGEPDE 252 >gi|284054148|ref|ZP_06384358.1| hypothetical protein AplaP_22106 [Arthrospira platensis str. Paraca] gi|291567772|dbj|BAI90044.1| peptidoglycan-binding domain 1 protein [Arthrospira platensis NIES-39] Length = 253 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V L L I +P + + +AVK FQ R+ L +G+ D+ + + Sbjct: 64 AIVSSLHNHLNIVVRPNPPLPGNQFYGPKTTAAVKDFQKRYDLPVTGVADTYVRDKLEDT 123 Query: 169 V 169 Sbjct: 124 A 124 Score = 39.6 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 1/95 (1%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LR L G P S DA + ++ FQ L G+V T M V Sbjct: 11 ELRFVLYGLGYGVPVNNDSPT-DAIAQQGIRAFQHDRNLVVDGIVGDKTQAEMAAIVSSL 69 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 L + + L + + Sbjct: 70 HNHLNIVVRPNPPLPGNQFYGPKTTAAVKDFQKRY 104 >gi|209964384|ref|YP_002297299.1| hypothetical protein RC1_1064 [Rhodospirillum centenum SW] gi|209957850|gb|ACI98486.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 226 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V+ +++ L G + + SA++ FQ G V + L A+ Sbjct: 168 VRNIQQELNRLGY--SAGKPDGLYGPSTRSAIEGFQKDRDQSVDGEVTADLLRALR 221 >gi|84499391|ref|ZP_00997679.1| peptidoglycan-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84392535|gb|EAQ04746.1| peptidoglycan-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 379 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + L+ERL G + G S +A++ +Q GL +G+ + L Sbjct: 320 GLTRADRIALQERLTARGY--DTGGTSGVIGPKSRAAIEAYQWDAGLGVTGVPSPALLAQ 377 Query: 165 MN 166 + Sbjct: 378 LG 379 >gi|121602040|ref|YP_988744.1| peptidoglycan binding domain-containing protein [Bartonella bacilliformis KC583] gi|120614217|gb|ABM44818.1| peptidoglycan binding domain protein [Bartonella bacilliformis KC583] Length = 281 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 9/131 (6%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDILSR 91 LD + + N I +P S + IA + D ++ Sbjct: 148 GSLDNSKIHHAATQWEQKATNKTVPTQGDI---VPKQSADEIALLIERSEMEMANDTATK 204 Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G + L + +++E L G + ++ D AVK FQ L Sbjct: 205 GVVTQSEEASLKP--VIADIMQVQEALRAFG--NQEVTITGIEDQKTVDAVKQFQKIFHL 260 Query: 152 DPSGMVDSSTL 162 +G +D++ L Sbjct: 261 PITGKIDNTVL 271 >gi|115523515|ref|YP_780426.1| hypothetical protein RPE_1496 [Rhodopseudomonas palustris BisA53] gi|115517462|gb|ABJ05446.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris BisA53] Length = 503 Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 12/67 (17%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 N +H P P + GCVR+ D L T R + ++ Sbjct: 126 NGIALHGGPLPGY------AASHGCVRM--PYDFAEKLFDKT----RIGMRVIIAPHDAA 173 Query: 379 PVKLATE 385 PV+ A Sbjct: 174 PVEFAHP 180 >gi|320180157|gb|EFW55096.1| General secretion pathway protein A [Shigella boydii ATCC 9905] Length = 266 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L+ L + L S S + + +K FQ H L Sbjct: 169 WKMSPEGESTITRDSSEEEILWLKTMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 226 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 227 KTDGVVGFSTL 237 >gi|261216711|ref|ZP_05930992.1| lytic Murein transglycosylase [Brucella ceti M13/05/1] gi|260921800|gb|EEX88368.1| lytic Murein transglycosylase [Brucella ceti M13/05/1] Length = 174 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 121 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 173 >gi|170747515|ref|YP_001753775.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170654037|gb|ACB23092.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 212 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVR--VRNIIDLDVWLLKDTPTWSRYHIEEV 371 F++ +H T R + GCVR VRN L + +R IE Sbjct: 88 MFFTTQGHAIHGTNHVRSLG---RAASHGCVRLSVRNAATLFNLVKSQGMGRTRVVIEGA 144 >gi|167624318|ref|YP_001674612.1| lytic murein transglycosylase [Shewanella halifaxensis HAW-EB4] gi|167354340|gb|ABZ76953.1| lytic murein transglycosylase [Shewanella halifaxensis HAW-EB4] Length = 396 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ L+ +L G A ++ +Q GL G D +T +A+ V Sbjct: 339 ARVKELQVQLNSQGY--DVGKPDGILGAKSVKGLQAYQKSQGLVADGYPDEATFKALKV 395 >gi|51891198|ref|YP_073889.1| putative carboxy-terminal processing proteinase [Symbiobacterium thermophilum IAM 14863] gi|51854887|dbj|BAD39045.1| putative carboxy-terminal processing proteinase [Symbiobacterium thermophilum IAM 14863] Length = 465 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + R + G+ + V L+ERL + G F AV F HGL+ Sbjct: 370 PLVADRVMTTGHVGLDVLGLQERLALLGY---RTDRDGYFKGQTTLAVLQFARDHGLNEV 426 Query: 155 GMVDSS 160 MVD + Sbjct: 427 PMVDKA 432 >gi|293381123|ref|ZP_06627140.1| NlpC/P60 family protein [Lactobacillus crispatus 214-1] gi|290922335|gb|EFD99320.1| NlpC/P60 family protein [Lactobacillus crispatus 214-1] Length = 375 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 7/77 (9%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR--IRQLQVNLMRIKKL--- 186 ++ +AVK FQ H L +G V+ +T E M I L Sbjct: 178 NYYNQATYNAVKNFQRSHHLPATGNVNLATWEKMGFSKKSWYSIDSYVAPLKAYAWQGRK 237 Query: 187 --LEQKMGLRYVLVNIP 201 +E + Y + P Sbjct: 238 AHIEAMINQAYKYMGKP 254 >gi|227879015|ref|ZP_03996910.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] gi|256844233|ref|ZP_05549719.1| periplasmic protease [Lactobacillus crispatus 125-2-CHN] gi|256849367|ref|ZP_05554800.1| periplasmic protease [Lactobacillus crispatus MV-1A-US] gi|312977013|ref|ZP_07788762.1| peptidoglycan binding domain-containing protein [Lactobacillus crispatus CTV-05] gi|227861386|gb|EEJ69010.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] gi|256613311|gb|EEU18514.1| periplasmic protease [Lactobacillus crispatus 125-2-CHN] gi|256714143|gb|EEU29131.1| periplasmic protease [Lactobacillus crispatus MV-1A-US] gi|310896341|gb|EFQ45406.1| peptidoglycan binding domain-containing protein [Lactobacillus crispatus CTV-05] Length = 380 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 7/77 (9%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR--IRQLQVNLMRIKKL--- 186 ++ +AVK FQ H L +G V+ +T E M I L Sbjct: 183 NYYNQATYNAVKNFQRSHHLPATGNVNLATWEKMGFSKKSWYSIDSYVAPLKAYAWQGRK 242 Query: 187 --LEQKMGLRYVLVNIP 201 +E + Y + P Sbjct: 243 AHIEAMINQAYKYMGKP 259 >gi|332976083|gb|EGK12951.1| N-acetylmuramoyl-L-alanine amidase [Desmospora sp. 8437] Length = 310 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 9/130 (6%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRH---GLDPSG 155 +G S +V+ L ERL+ G K G F + A FQ G D G Sbjct: 178 SAFQIGKSHPAVKVLGERLVTHGFGSYYKVGPGPTFTEVDKKACAAFQRAQGWSGSDADG 237 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 T E + + ++ V+ + A ++ K + Sbjct: 238 FPGPVTWERLMKQAKG-----EKKPAPKPTPQPDPKKDDWIRVSHNGKQVNAFKDPKNAV 292 Query: 216 RSTVIVGRVD 225 R + Sbjct: 293 REVEKYAKPG 302 >gi|224543426|ref|ZP_03683965.1| hypothetical protein CATMIT_02635 [Catenibacterium mitsuokai DSM 15897] gi|224523653|gb|EEF92758.1| hypothetical protein CATMIT_02635 [Catenibacterium mitsuokai DSM 15897] Length = 216 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 GN +V L+ L + G + G++ + +AVK +Q GL +G++D Sbjct: 79 PGN--PNVCILQCALFVKGY--NAGGITGVYYTAGVNAVKQYQEDAGLPVTGIIDWKVW 133 >gi|15896489|ref|NP_349838.1| spore cortex-lytic protein [Clostridium acetobutylicum ATCC 824] gi|15026317|gb|AAK81178.1|AE007820_4 Spore cortex-lytic enzyme, pre-pro-form (diverged form of N-acetylmuramyl-L-alanine amidase); peptidoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325510648|gb|ADZ22284.1| Spore cortex-lytic enzyme, pre-pro-form (diverged form of N-acetylmuramyl-L-alanine amidase) [Clostridium acetobutylicum EA 2018] Length = 437 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ + V+ ++ L IS + P ++ F ++V+ FQ + + Sbjct: 324 PGYALRVGSTGIPVRTIQTYLNRISNNYSAIPKVAVTSTFGTETRNSVQAFQRIFNIPVT 383 Query: 155 GMVDSSTLEAMN 166 G+VD T ++ Sbjct: 384 GVVDYGTWYRIS 395 >gi|307825598|ref|ZP_07655816.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307733484|gb|EFO04343.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 168 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 3/32 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 Y+H P+ ++ + + GC+R++N L Sbjct: 124 IYIHGCPDELMNGSPE---SHGCIRMKNADVL 152 >gi|260769526|ref|ZP_05878459.1| VgrG protein [Vibrio furnissii CIP 102972] gi|260614864|gb|EEX40050.1| VgrG protein [Vibrio furnissii CIP 102972] Length = 1073 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 11/73 (15%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH----------- 149 G+ V+ +++ LI G + G +F + E VK+FQ + Sbjct: 747 SYKTGSKGQEVELIQKALIKLGFDLGTYGADGSFGSTTERQVKMFQQSYTPSHSTHPDYK 806 Query: 150 GLDPSGMVDSSTL 162 G+V TL Sbjct: 807 VGKADGIVGQGTL 819 >gi|260464330|ref|ZP_05812522.1| lytic murein transglycosylase [Mesorhizobium opportunistum WSM2075] gi|259029954|gb|EEW31238.1| lytic murein transglycosylase [Mesorhizobium opportunistum WSM2075] Length = 392 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 7/89 (7%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 T A T +A G L R G + ++ L+ +L G + Sbjct: 308 TYALTAANLA-----ARLDGAQPLDPRSPEPGLDNNQMKALQTKLEARGY--DVGTVDGI 360 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 AV+ QMR GL G L Sbjct: 361 LGTNTREAVRKEQMRLGLPVDGWPTPELL 389 >gi|254715008|ref|ZP_05176819.1| Putative peptidoglycan binding domain 1 [Brucella ceti M13/05/1] Length = 184 Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P G L + Sbjct: 131 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLSVLRR 183 >gi|209526749|ref|ZP_03275271.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209492793|gb|EDZ93126.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 253 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V L L I +P + + +AVK FQ R+ L +G+ D+ + + Sbjct: 64 AIVSSLHNHLNIVVRPNPPLPGNQFYGPKTTAAVKDFQKRYDLPVTGVADTYVRDKLEDT 123 Query: 169 V 169 Sbjct: 124 A 124 Score = 39.6 bits (91), Expect = 0.95, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 1/95 (1%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LR L G P S DA + ++ FQ L G+V T M V Sbjct: 11 ELRFVLYGLGYGVPVNNDSPT-DAIAQQGIRAFQHDRNLVVDGIVGDKTQAEMAAIVSSL 69 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 L + + L + + Sbjct: 70 HNHLNIVVRPNPPLPGNQFYGPKTTAAVKDFQKRY 104 >gi|194754836|ref|XP_001959700.1| GF11910 [Drosophila ananassae] gi|190620998|gb|EDV36522.1| GF11910 [Drosophila ananassae] Length = 585 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQQTWVSAIQEFQNFAGLNITGELDEETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 + R ++ + R + Sbjct: 97 DRVGNGEGRSKRYALQGSRWR 117 >gi|121594204|ref|YP_986100.1| lytic murein transglycosylase [Acidovorax sp. JS42] gi|120606284|gb|ABM42024.1| lytic murein transglycosylase [Acidovorax sp. JS42] Length = 474 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 7/75 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP R L + S V+ L+E L G + + V+ +Q GL Sbjct: 407 WP----RELQPLSRS-EVRALQEALNARGL--DTGTPDGVAGPATRAGVRRYQQSVGLPA 459 Query: 154 SGMVDSSTLEAMNVP 168 G L+ + P Sbjct: 460 DGYATRELLQRLLTP 474 >gi|328770924|gb|EGF80965.1| hypothetical protein BATDEDRAFT_88038 [Batrachochytrium dendrobatidis JAM81] Length = 1001 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 3/59 (5%) Query: 115 RERLIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 R RL G P D + VK FQ GL+ + ++D T M+ R Sbjct: 299 RSRLTALGYPPPKGVH--LSDPNSLRKQVKHFQRTVGLEVTMVLDKRTRTKMDSNTTGR 355 >gi|254510501|ref|ZP_05122568.1| peptidoglycan binding domain protein [Rhodobacteraceae bacterium KLH11] gi|221534212|gb|EEE37200.1| peptidoglycan binding domain protein [Rhodobacteraceae bacterium KLH11] Length = 430 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 19/82 (23%) Query: 91 RGGWPELPIRPLHLGNSSVSV------QRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + GWP V + L+ RL +G +KG+ +AV+ Sbjct: 362 QTGWP-----------RGDRVLSFAERKELQRRLTQAGF--DTKGIDGRTGPNTINAVRA 408 Query: 145 FQMRHGLDPSGMVDSSTLEAMN 166 FQ+ GL P G S LE M Sbjct: 409 FQVAQGLVPDGYPTLSLLERMR 430 >gi|189346361|ref|YP_001942890.1| ErfK/YbiS/YcfS/YnhG family protein [Chlorobium limicola DSM 245] gi|189340508|gb|ACD89911.1| ErfK/YbiS/YcfS/YnhG family protein [Chlorobium limicola DSM 245] Length = 257 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 25/91 (27%) Query: 288 WNSPEPPNFIFRQDPGK---------------INAMASTKIEFYSRNNTYMHDTPEPILF 332 W +R PGK NA I FY +MH + L Sbjct: 168 WGPVSSGRKTYRTPPGKFFVNYKQRHKLSIKYDNAPMPFSINFYG--GYFMH---QQSLP 222 Query: 333 NNVVRFETSGCVR--VRNIIDLDVWLLKDTP 361 + GCVR + + L W+ P Sbjct: 223 GYP---ASHGCVRLLMTDAEKLFNWVKPRDP 250 >gi|167745912|ref|ZP_02418039.1| hypothetical protein ANACAC_00606 [Anaerostipes caccae DSM 14662] gi|167654427|gb|EDR98556.1| hypothetical protein ANACAC_00606 [Anaerostipes caccae DSM 14662] Length = 322 Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 15/98 (15%) Query: 72 KETIAQTEKAIAF--YQDILSRGGWPE-----LPIRPLHLGNSSVSVQRLRERLIISGDL 124 K ++ +KAI Y + G + + G V+ ++ Sbjct: 228 KTSVVALQKAINKDKYAKLSVNGKLDAKTKNAMKKIVIRSGKRGEVVKFVQG-------- 279 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + A+K +Q +H L GM +TL Sbjct: 280 KVGTTKDGICGSKTVKAIKAYQRKHNLKVDGMAGYNTL 317 >gi|195586513|ref|XP_002083018.1| GD24926 [Drosophila simulans] gi|194195027|gb|EDX08603.1| GD24926 [Drosophila simulans] Length = 536 Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 66 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 125 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 126 DRVGTGDSRSKRYALQGSRWR 146 >gi|171913441|ref|ZP_02928911.1| ErfK/YbiS/YcfS/YnhG family protein [Verrucomicrobium spinosum DSM 4136] Length = 536 Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 37/170 (21%), Gaps = 24/170 (14%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 I L+ + G++ V R + W + Sbjct: 366 PLADASEPVTASIIALTRLQIYKAGRLVAVMPVASARPGLRGRNF------------WTV 413 Query: 247 PRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +I + +DP + + E V + G Sbjct: 414 LDAIPAPRLATLQEDRDPPKAPA-SPVISIGASSIPTPEAVPPKAKLEEEQFL--GSGPN 470 Query: 306 NAMASTKIEFYSRNN-----TYMHDTPEPILFNNVVRFETSGCVRVRNII 350 N + I +H T P N+ G R+ N Sbjct: 471 NPVGVVWINLARGKGAEPLPFGLHGTSIPAKMNSQEGL---GGFRLTNWD 517 >gi|224541178|ref|ZP_03681717.1| hypothetical protein CATMIT_00331 [Catenibacterium mitsuokai DSM 15897] gi|224525929|gb|EEF95034.1| hypothetical protein CATMIT_00331 [Catenibacterium mitsuokai DSM 15897] Length = 487 Score = 41.2 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 50/207 (24%), Gaps = 80/207 (38%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPR 248 +G Y+ V++ L +NG+ L+S + G++ DR TP + N Sbjct: 348 LGGNYIEVDLSRQHLWIYKNGQCVLQSDCVSGKMTRDRYTPAGTYYVYSKERN------- 400 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 ++ V + + Sbjct: 401 -----------------------RVLRGTKDPVT-----------GKYPYESPV------ 420 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFE---TSGCVRVRNIIDLDVWLLKDTPTWSR 365 S + F HD F + + GCV + + Sbjct: 421 -SYWMPFN--RGIGFHDANWRNKFG-GNLYVNGGSHGCVNL--PVGFA------------ 462 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVY 392 + + T +PV Y Sbjct: 463 GTMYNTITTG----------MPVVIYY 479 >gi|320528722|ref|ZP_08029874.1| peptidase [Solobacterium moorei F0204] gi|320130932|gb|EFW23510.1| peptidase [Solobacterium moorei F0204] Length = 513 Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L G F + E A++ F+ G+ G++D T Sbjct: 441 LDYLGY--SVGRTDGYFSSQTEDALRQFETDKGIKADGVLDKETFS 484 >gi|255308768|ref|ZP_05352939.1| hypothetical protein CdifA_19448 [Clostridium difficile ATCC 43255] Length = 202 Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 F +AVK Q + GL G+V +T EA Sbjct: 161 STDGQFGPATYNAVKSLQGKLGLTKDGIVGKNTWEAAGK 199 >gi|315079336|gb|EFT51337.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL053PA2] Length = 343 Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKGFQRANALKQTGVTDAVTL 198 >gi|304393565|ref|ZP_07375493.1| peptidoglycan-binding domain 1 protein [Ahrensia sp. R2A130] gi|303294572|gb|EFL88944.1| peptidoglycan-binding domain 1 protein [Ahrensia sp. R2A130] Length = 262 Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 2/66 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 ++ L + G L + + A+ FQ GL G L + + + Sbjct: 106 EVQTALSVRGYY--GGKLDGVYGSRTRKAITAFQTDTGLAKDGKPSVRLLTQILMSASAQ 163 Query: 173 IRQLQV 178 ++ + Sbjct: 164 TDRVPL 169 >gi|157278503|ref|NP_001098353.1| membrane-type matrix metalloproteinase [Oryzias latipes] gi|46359589|dbj|BAD15297.1| membrane-type matrix metalloproteinase [Oryzias latipes] Length = 658 Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + AV Q +GL +G +D T+ AM P D Sbjct: 43 LRMYGYLPQASRQMSTMRSSQILSDAVSDMQRFYGLQVTGQMDPQTISAMKRPRCGVPDK 102 Query: 172 RIRQLQVNLMRIK 184 Q++ N+ R + Sbjct: 103 FGGQIKTNVRRKR 115 >gi|317968892|ref|ZP_07970282.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Synechococcus sp. CB0205] Length = 127 Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 9/54 (16%) Query: 321 TYMHDTP----EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 MH P F + GC+R+ + WL ++TP + I+ Sbjct: 79 ICMHGAPWQEQANEAFGVPR---SHGCIRIPSPH--ARWLFENTPKGTPVSIQA 127 >gi|302551661|ref|ZP_07304003.1| membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302469279|gb|EFL32372.1| membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 510 Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 8/78 (10%) Query: 96 ELPIRP----LHLGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHG 150 ++P P G ++ + R+R +L+ G + + AV+ FQ G Sbjct: 431 DVPGYPGRAMFRPGEANPHITRMRRQLVRKGFGRFYTAEPGPRWSEADRRAVEAFQRTQG 490 Query: 151 ---LDPSGMVDSSTLEAM 165 G T + Sbjct: 491 WRGGAADGFPGPETWRRL 508 >gi|313836530|gb|EFS74244.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL037PA2] gi|314928984|gb|EFS92815.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL044PA1] gi|314971123|gb|EFT15221.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL037PA3] gi|328906571|gb|EGG26346.1| lipoprotein A-like protein [Propionibacterium sp. P08] Length = 361 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ T ++ Sbjct: 142 GDHNARSKVVQRDLSTLNYFPA-KWVGLPYGPATTNAVKVFQRANALKQTGVTDAVT-QS 199 Query: 165 MNVPVDLRIRQLQVNLMR 182 + RQ + + Sbjct: 200 LLKSKANYQRQRAASAEK 217 >gi|298490390|ref|YP_003720567.1| OpcA protein ['Nostoc azollae' 0708] gi|298232308|gb|ADI63444.1| OpcA protein ['Nostoc azollae' 0708] Length = 457 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L +G + +SA++ Q +H L +G TL A+ Sbjct: 65 LTATGFYH--GPIDGILGPQTQSALREVQKKHHLPETGSATPETLTALR 111 >gi|218510707|ref|ZP_03508585.1| hypothetical protein RetlB5_26753 [Rhizobium etli Brasil 5] Length = 98 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ +++ L G + + A +A+K FQ H L P+G+V +L A+ P Sbjct: 40 VRDVQKALAEQGF--DAGVADGIWGAKSIAALKGFQRAHDLIPTGVVTQDSLRALFPP 95 >gi|170742496|ref|YP_001771151.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium sp. 4-46] gi|168196770|gb|ACA18717.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium sp. 4-46] Length = 249 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 20/133 (15%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE--------- 96 + +A + I + PI + + ++ A A QD W Sbjct: 109 PYPEAQVAAVIA-LSRDILARWPIRADRVLGHSDVAPARKQDPGETFPWARLHREGIGHF 167 Query: 97 LPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +P P+ G++ ++ L+ + G + ++ FD+ + + V+ FQ Sbjct: 168 VPPVPIRDGRFFAEGDAGQPIEALQAMFALYGY---DQPVTGRFDSGMRAVVEAFQRHFR 224 Query: 151 LD-PSGMVDSSTL 162 + G+ DSST+ Sbjct: 225 PERVDGVADSSTI 237 >gi|262047872|ref|ZP_06020820.1| periplasmic protease [Lactobacillus crispatus MV-3A-US] gi|260571816|gb|EEX28389.1| periplasmic protease [Lactobacillus crispatus MV-3A-US] Length = 380 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 7/77 (9%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR--IRQLQVNLMRIKKL--- 186 ++ +AVK FQ H L +G V+ +T E M I L Sbjct: 183 NYYNQATYNAVKNFQRSHHLPATGNVNLATWEKMGFSKKSWYSIDSYVAPLKAYAWQGRK 242 Query: 187 --LEQKMGLRYVLVNIP 201 +E + Y + P Sbjct: 243 AHIEAMINQAYKYMGKP 259 >gi|149915539|ref|ZP_01904065.1| hypothetical protein RAZWK3B_06277 [Roseobacter sp. AzwK-3b] gi|149810431|gb|EDM70274.1| hypothetical protein RAZWK3B_06277 [Roseobacter sp. AzwK-3b] Length = 389 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G S ++ L+ +L G G+ A +AV+ Q GL Sbjct: 319 GAPVFEAGNPAEGLSGEDMKALQRKLAARGY--DVGGIDGILGAGTRAAVQDVQQELGLP 376 Query: 153 PS 154 Sbjct: 377 AD 378 >gi|314924447|gb|EFS88278.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL001PA1] Length = 343 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 198 >gi|227509795|ref|ZP_03939844.1| periplasmic protease [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190719|gb|EEI70786.1| periplasmic protease [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 344 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------VDLRIRQLQVNLMRIK 184 ++ AV+ FQ RH L +G V+ +T M +D + L+ N + + Sbjct: 147 NKYNQATYHAVRQFQSRHHLKVTGNVNEATWLKMGFTKTSWTGIDSYVAPLKANAWQGR 205 >gi|118590236|ref|ZP_01547639.1| hypothetical protein SIAM614_11998 [Stappia aggregata IAM 12614] gi|118437208|gb|EAV43846.1| hypothetical protein SIAM614_11998 [Stappia aggregata IAM 12614] Length = 276 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 22/133 (16%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK------GLSVAFDAY 137 + + W L G+S V ++ LI G P + Sbjct: 13 QLEAAATNSPW-------LGSGSSGHGVHLVQFGLIELGFPMPKSVGGTGLSPDGIYGNE 65 Query: 138 VESAVKLFQM-RHG---LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 VK FQ HG ++ G V +T+ + R + +R+ + Sbjct: 66 TVQKVKEFQRSSHGGPPINDDGAVGRNTMAKL-----DRALPFLTHKVRVHIFVVVTPDA 120 Query: 194 RYVLVNIPAASLE 206 A L Sbjct: 121 PISTAESTAKELY 133 >gi|254295252|ref|YP_003061275.1| peptidoglycan-binding protein [Hirschia baltica ATCC 49814] gi|254043783|gb|ACT60578.1| Peptidoglycan-binding domain 1 protein [Hirschia baltica ATCC 49814] Length = 497 Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 S+ L+ L G + E AV+ FQ +GL G V T+ Sbjct: 267 SSISDLQIALRDRGFYS--GPIDGIIGTQTEEAVRQFQAANGLPHQGFVTMETMR 319 >gi|332652764|ref|ZP_08418509.1| penicillin-resistant DD-carboxypeptidase [Ruminococcaceae bacterium D16] gi|332517910|gb|EGJ47513.1| penicillin-resistant DD-carboxypeptidase [Ruminococcaceae bacterium D16] Length = 176 Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 19/50 (38%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL P + F AV LFQ +G+VD T +A+ Sbjct: 23 WRLATRYPFLPKLAMDGLFGEETLEAVMLFQREMAPPVTGVVDQRTWDAI 72 >gi|317050819|ref|YP_004111935.1| lytic murein transglycosylase [Desulfurispirillum indicum S5] gi|316945903|gb|ADU65379.1| lytic murein transglycosylase [Desulfurispirillum indicum S5] Length = 415 Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 6/75 (8%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 V L++RL G D A +AV+ FQ + + LE + Sbjct: 346 EVLELQQRLAALGLYDAEAT--GRIGAQTRNAVRQFQQMVKVPADAYPTHALLEQLR--- 400 Query: 170 DLRIRQLQVNLMRIK 184 R + + V L R+ Sbjct: 401 -QRQQDVTVELSRVD 414 >gi|261323654|ref|ZP_05962851.1| lytic Murein transglycosylase [Brucella neotomae 5K33] gi|261299634|gb|EEY03131.1| lytic Murein transglycosylase [Brucella neotomae 5K33] Length = 399 Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L+ L G D + + A +A++ FQ R+GL+P G L Sbjct: 346 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLS 394 >gi|225016924|ref|ZP_03706116.1| hypothetical protein CLOSTMETH_00837 [Clostridium methylpentosum DSM 5476] gi|224950318|gb|EEG31527.1| hypothetical protein CLOSTMETH_00837 [Clostridium methylpentosum DSM 5476] Length = 146 Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 99 IRPLHLGNSSVSV---QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L GN V Q+LR + I P + D + A+ FQ+ + L P G Sbjct: 51 SKILEEGNIGAEVRPVQQLRAVINIPDGQIPVRIQDRIVDQNRKDALTTFQLWYALVPDG 110 Query: 156 MVDSSTLEAMNVPVDL 171 ++D T +N P Sbjct: 111 VLDRETWNKINEPPSP 126 >gi|282854958|ref|ZP_06264292.1| lipoprotein A-like protein [Propionibacterium acnes J139] gi|282582104|gb|EFB87487.1| lipoprotein A-like protein [Propionibacterium acnes J139] gi|314967174|gb|EFT11273.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL082PA2] gi|314981567|gb|EFT25661.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL110PA3] gi|315092330|gb|EFT64306.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL110PA4] gi|327328748|gb|EGE70508.1| lipoprotein A family protein [Propionibacterium acnes HL103PA1] Length = 343 Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 198 >gi|170740072|ref|YP_001768727.1| lytic murein transglycosylase [Methylobacterium sp. 4-46] gi|168194346|gb|ACA16293.1| lytic murein transglycosylase [Methylobacterium sp. 4-46] Length = 391 Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 3/80 (3%) Query: 91 RGGWPELPIRPLH-LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GG P P+ + + L+ L L + AV+ +Q Sbjct: 314 AGGGPLAAPWPIRAPRLDAAGLAALQRGLAARDLYA--GPLDGRAGPKLREAVRRYQTAA 371 Query: 150 GLDPSGMVDSSTLEAMNVPV 169 GL G + L+ + Sbjct: 372 GLPADGYATPALLDHLRRAP 391 >gi|126737297|ref|ZP_01753032.1| peptidoglycan binding domain protein [Roseobacter sp. SK209-2-6] gi|126721882|gb|EBA18585.1| peptidoglycan binding domain protein [Roseobacter sp. SK209-2-6] Length = 673 Score = 41.2 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 97/287 (33%), Gaps = 32/287 (11%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L + +L + + ++V ++ + + + + P+ T A Sbjct: 176 FLALADNLRSQFYPLGAGNT--QTPVATLVQNQIQSQIEALSETQPTAEPVAEPATPALP 233 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 ++ A + L + + L+ L +G + AF Sbjct: 234 DETRAEARR----------SESRL---SRDER-KDLQIALKAAGFYS--AAIDGAFGRGT 277 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 ++ +Q GL+P+G++ ++ + + + + + V + R++ L + + Sbjct: 278 RRSMSDWQATRGLEPTGVLTTAQRQMLLDEYNAPL--ISVGMARVQDLKAG------IAL 329 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 IPA + ++ + G + + ++ R ++ + I + +++ Sbjct: 330 EIPAGEVT-FDHYEPPFAHYNASGDLGARVLLISQRGDKRTLYGLYDI---MQTLEIVP- 384 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 + P+ + N+ + GK V + + E F G Sbjct: 385 -LEGPRSREGNSFTLEGRDGKIVSHTQASLKNGEIKGFTLIWPAGDE 430 >gi|315104685|gb|EFT76661.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL050PA2] Length = 343 Score = 41.2 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAITL 198 >gi|114707783|ref|ZP_01440677.1| Lytic murein transglycosylase [Fulvimarina pelagi HTCC2506] gi|114536772|gb|EAU39902.1| Lytic murein transglycosylase [Fulvimarina pelagi HTCC2506] Length = 1068 Score = 41.2 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + +++RL G S A + V +Q +GL +G +D + L + Sbjct: 141 ADIALVQDRLHALGYDVGSA--DGIAGARTLAGVSRYQTENGLVVTGQLDRALLSHIK 196 >gi|186684152|ref|YP_001867348.1| OpcA protein [Nostoc punctiforme PCC 73102] gi|1352642|sp|P48971|OPCA_NOSP7 RecName: Full=Putative OxPP cycle protein opcA gi|558506|gb|AAA50771.1| putative OxPPCycle gene [Nostoc sp.] gi|186466604|gb|ACC82405.1| OpcA protein [Nostoc punctiforme PCC 73102] gi|1094846|prf||2106403D opcA gene Length = 465 Score = 41.2 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 L G + + + +A++ Q +H L +G TL Sbjct: 77 LAALGFY--NGPIDGILGPQMAAALREVQKKHKLPETGTATQETL 119 >gi|268317590|ref|YP_003291309.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodothermus marinus DSM 4252] gi|262335124|gb|ACY48921.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodothermus marinus DSM 4252] Length = 321 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 9/90 (10%) Query: 276 EKGKEVFVEEVD-WNSPEPPNFIFRQDPGKINAMASTK-IEFYSRNNTYMHDTPEPILFN 333 G +N + F+ ++H P P Sbjct: 157 NTGAPDNPTPNGRFNFNWKEEYRVSSLSPPGEPWEMYWVFNFHDARGIHVHQYPMP---- 212 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 ++ GCVR+ + W+ W Sbjct: 213 -TGGPDSHGCVRLIDAD--AKWVFHWADPW 239 >gi|289665049|ref|ZP_06486630.1| transglycosylase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 425 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 NS+ + L++RL G G+ A ++ FQ L G +S L Sbjct: 363 PLNSTAQITELQQRLTDKGF--DVGGIDGVLGAQTRQGIRAFQRSQQLPQDGYASTSLLA 420 Query: 164 AMNV 167 + Sbjct: 421 RLRA 424 >gi|256059683|ref|ZP_05449878.1| Putative peptidoglycan binding domain 1 [Brucella neotomae 5K33] Length = 382 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L+ L G D + + A +A++ FQ R+GL+P G L Sbjct: 329 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPDGHPSKEVLS 377 >gi|239979465|ref|ZP_04701989.1| hypothetical protein SalbJ_08518 [Streptomyces albus J1074] Length = 134 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 6/74 (8%) Query: 99 IRPLHLGNSSVSVQRLRERLIIS----GDLDPSKGLSVAFDAYVESAVKLFQMRH--GLD 152 + G++ V+ ++ + + G + + + A SAV+ FQ ++ Sbjct: 56 AKWAEYGSTGAHVKEIQALINGTTTYYGTHGKALAVDGIYGAGTRSAVRWFQQKYIGASA 115 Query: 153 PSGMVDSSTLEAMN 166 G+V T +A+ Sbjct: 116 VDGIVGPRTWDALR 129 >gi|303272007|ref|XP_003055365.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463339|gb|EEH60617.1| predicted protein [Micromonas pusilla CCMP1545] Length = 576 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 1/104 (0%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + AV+ +Q+ +GL P+G + A + I L + Sbjct: 76 KTDGIYGRDTAEAVEAWQVMNGLAPTGYFGPKSRAAFIMN-SEPISGLAAPARLDLAMAP 134 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 +V P+ V + + P+++ Sbjct: 135 TSSAPPPSVVASPSHVPAYVPVYVPSQTARGVGVANGGGAPMMN 178 >gi|227903913|ref|ZP_04021718.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC 4796] gi|227868304|gb|EEJ75725.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC 4796] Length = 208 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 7/53 (13%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL G ++ +AVK FQ H L +G V+ T + + Sbjct: 2 HRLGTWG-------GHNYYNQATYNAVKNFQKNHNLPATGNVNLKTWQKLGFS 47 >gi|254485842|ref|ZP_05099047.1| Putative peptidoglycan binding domain protein [Roseobacter sp. GAI101] gi|214042711|gb|EEB83349.1| Putative peptidoglycan binding domain protein [Roseobacter sp. GAI101] Length = 486 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 36/72 (50%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +S ++ ++L+ L + AFD +++K +Q+ GL P+G++D + L+ + Sbjct: 9 TSSTIVLEAQKLLNQSALQSRAPENGAFDKSTLNSIKQYQLESGLRPTGILDKTLLDNLR 68 Query: 167 VPVDLRIRQLQV 178 + + Q+ Sbjct: 69 KSAKISNPKYQI 80 >gi|153011588|ref|YP_001372802.1| lytic murein transglycosylase [Ochrobactrum anthropi ATCC 49188] gi|151563476|gb|ABS16973.1| lytic murein transglycosylase [Ochrobactrum anthropi ATCC 49188] Length = 412 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + + +A++ FQ R+GL P G L + Sbjct: 359 ELQTHLKALGYYDGN--IDGKIGSTSRAAIEAFQQRNGLQPDGHPSKEVLSVLRR 411 >gi|289669825|ref|ZP_06490900.1| transglycosylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 425 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 NS+ + L++RL G G+ A ++ FQ L G +S L Sbjct: 363 PLNSTAQITELQQRLTDKGF--DVGGIDGVLGAQTRQGIRAFQRSQQLPQDGYASTSLLA 420 Query: 164 AMNV 167 + Sbjct: 421 RLRA 424 >gi|302873762|ref|YP_003842395.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307689999|ref|ZP_07632445.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302576619|gb|ADL50631.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 447 Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 84 FYQDILSRG-GWPELPIRPLHLGNSSVSVQRLRERL--IISGD-LDPSKGLSVAFDAYVE 139 + + G P P PL +G++ V+ ++ L I + L P + + + Sbjct: 316 RIRKLKKMGNLTPSYPGFPLQIGSTGEPVKIIQTSLNKIATHYPLIPKSNVDGNLGSVTK 375 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMN 166 A++ FQ L +G + +T ++ Sbjct: 376 KAIETFQGIFNLPKTGTANYATWHKIS 402 >gi|224536863|ref|ZP_03677402.1| hypothetical protein BACCELL_01739 [Bacteroides cellulosilyticus DSM 14838] gi|224521529|gb|EEF90634.1| hypothetical protein BACCELL_01739 [Bacteroides cellulosilyticus DSM 14838] Length = 181 Score = 41.2 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 6/54 (11%) Query: 305 INAMASTKIEF--YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 A I +H T P R + GC+R+ N DL + Sbjct: 109 DGAYGDFFIRLLVPGHKGIGIHGTHLPESIG--TRA-SEGCIRMYN-EDLKKLV 158 >gi|27377359|ref|NP_768888.1| hypothetical protein blr2248 [Bradyrhizobium japonicum USDA 110] gi|27350503|dbj|BAC47513.1| blr2248 [Bradyrhizobium japonicum USDA 110] Length = 520 Score = 41.2 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 8/42 (19%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 N +H P P + GCVR+ L T Sbjct: 126 NGIALHGGPLPGY------AASHGCVRM--PFGFAEGLFDKT 159 >gi|315094697|gb|EFT66673.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL060PA1] Length = 343 Score = 41.2 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 198 >gi|209693664|ref|YP_002261592.1| putative cell wall degradation enzyme [Aliivibrio salmonicida LFI1238] gi|208007615|emb|CAQ77716.1| putative cell wall degradation enzyme [Aliivibrio salmonicida LFI1238] Length = 739 Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 15/83 (18%) Query: 99 IRPLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR----HG 150 + G+ ++ ++E L+ G F + E AV FQ H Sbjct: 464 KGAIKKGDKDAPKSNEIKTIQEALLALNFDLGKYGADGDFGSGTEQAVIDFQREFVPTHE 523 Query: 151 L-------DPSGMVDSSTLEAMN 166 + G+V + TL A++ Sbjct: 524 VHPEYEMKKSDGVVGNQTLLALD 546 >gi|311070029|ref|YP_003974952.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus atrophaeus 1942] gi|310870546|gb|ADP34021.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus atrophaeus 1942] Length = 483 Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +PL L ++ V+ + L G F ++ AV FQ ++ L+ SG++D Sbjct: 392 KQPLKLDMNNEDVKHAQVLLK--GLSFDPGRDDGYFSEGMKKAVLAFQDQNKLNKSGVID 449 Query: 159 SSTLEAMNV 167 T E MN Sbjct: 450 QRTAEKMNQ 458 >gi|162448546|ref|YP_001610913.1| hypothetical protein sce0276 [Sorangium cellulosum 'So ce 56'] gi|161159128|emb|CAN90433.1| hypothetical protein sce0276 [Sorangium cellulosum 'So ce 56'] Length = 885 Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 RL G + D ++++ FQ H L+P+G +D +T Sbjct: 833 RLKNLGYYRGAGK--GEIDDETRASLRRFQSDHALEPTGELDGAT 875 >gi|47523768|ref|NP_999520.1| epoxide hydrolase 1 [Sus scrofa] gi|75069447|sp|P79381|HYEP_PIG RecName: Full=Epoxide hydrolase 1; AltName: Full=Epoxide hydratase; AltName: Full=Microsomal epoxide hydrolase gi|1840391|dbj|BAA19200.1| epoxide hydrolase [Sus scrofa] Length = 454 Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 GC + + L ++L+ TW+ ++ L + V +Y + Sbjct: 310 GCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLYWT 362 >gi|330841023|ref|XP_003292505.1| hypothetical protein DICPUDRAFT_157221 [Dictyostelium purpureum] gi|325077253|gb|EGC30978.1| hypothetical protein DICPUDRAFT_157221 [Dictyostelium purpureum] Length = 285 Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 69/246 (28%), Gaps = 54/246 (21%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L+ L + L+ + LS FD+ E A+ FQ + L +G++D T + Sbjct: 39 GGDIYILQNLLTRTKGLE-NLSLSSNFDSDTEMALGKFQSLNNLKSTGVLDVETANLL-- 95 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA-------SLEAVE-NGKVGLRSTV 219 L++N K Q V+IP + + + V L+ TV Sbjct: 96 --------LELNSADGYKDNGQIPPGFLYKVHIPVYKNRSIETTATLYDADLNVLLQFTV 147 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 + + + + F P + D Sbjct: 148 RTHGQNNN----ATGLAQNEFCNSGNTPT---------------------GLMTFDLNSP 182 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS-RNNTYMHDTPEPILFNNVVRF 338 E + Q + I + R+ MH P + Sbjct: 183 EPDPTDFGPYPIN----RAVQGIA-----GNAFIIISNIRDGILMHTGEWPDWNPTLPMP 233 Query: 339 ETSGCV 344 + GCV Sbjct: 234 NSHGCV 239 >gi|291451334|ref|ZP_06590724.1| predicted protein [Streptomyces albus J1074] gi|291354283|gb|EFE81185.1| predicted protein [Streptomyces albus J1074] Length = 138 Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 6/74 (8%) Query: 99 IRPLHLGNSSVSVQRLRERLIIS----GDLDPSKGLSVAFDAYVESAVKLFQMRH--GLD 152 + G++ V+ ++ + + G + + + A SAV+ FQ ++ Sbjct: 60 AKWAEYGSTGAHVKEIQALINGTTTYYGTHGKALAVDGIYGAGTRSAVRWFQQKYIGASA 119 Query: 153 PSGMVDSSTLEAMN 166 G+V T +A+ Sbjct: 120 VDGIVGPRTWDALR 133 >gi|221066750|ref|ZP_03542855.1| ErfK/YbiS/YcfS/YnhG family protein [Comamonas testosteroni KF-1] gi|220711773|gb|EED67141.1| ErfK/YbiS/YcfS/YnhG family protein [Comamonas testosteroni KF-1] Length = 438 Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 17/128 (13%) Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA----MASTKIE 314 +D ++ N ++ K EE D +P+ FI RQ PG + + + Sbjct: 192 ANEDGRFRVVGNFYVSVGKLGLGKKEEGDQRTPQGLYFIGRQIPGMKLPEFYGLGALTMN 251 Query: 315 FYSRN---------NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 + + ++H TP P + + + GCV + N +L++ + Sbjct: 252 YPNDWDRVVGRSGSGIWLHGTP-PDQYARLPEA-SDGCVVLANPD--LDFLMQTVERQTP 307 Query: 366 YHIEEVVK 373 I + Sbjct: 308 VLIRSSLH 315 >gi|195353242|ref|XP_002043114.1| GM11800 [Drosophila sechellia] gi|194127202|gb|EDW49245.1| GM11800 [Drosophila sechellia] Length = 610 Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 63 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 122 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 123 DRVGTGDSRSKRYALQGSRWR 143 >gi|241113037|ref|YP_002972872.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861245|gb|ACS58911.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 75 Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%) Query: 98 PIRPLHLGNSSV---SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L GNS+ V +++ L G S D +A+ Q + L + Sbjct: 3 PEKTL-PGNSNKFRRIVIQVQSGLPAYGYYAGSLT--GVVDEDTRAALSQMQKDNKLKVT 59 Query: 155 GMVDSSTLEAMNVPVD 170 G V + L A + Sbjct: 60 GTVTTEVLNAFGIAAR 75 >gi|314961936|gb|EFT06037.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL002PA2] Length = 343 Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 198 >gi|313813705|gb|EFS51419.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL025PA1] gi|327335339|gb|EGE77049.1| lipoprotein A family protein [Propionibacterium acnes HL097PA1] Length = 343 Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 198 >gi|297180603|gb|ADI16814.1| hypothetical protein [uncultured gamma proteobacterium HF0010_11K06] Length = 192 Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H T E L + GC+R++N +I L + K T Sbjct: 144 SKSRYIYIHGTAEEGLIGEP---ASLGCIRMKNSDVIKLFNRVRKGT 187 >gi|163849618|ref|YP_001637661.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] gi|163661223|gb|ABY28590.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium extorquens PA1] Length = 219 Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 11/107 (10%), Positives = 28/107 (26%), Gaps = 19/107 (17%) Query: 289 NSPEPPNFIFRQDPGKINAM-------ASTKIEFYSRNNTY-------MHDTPEPILFNN 334 + ++ G + + + + +H + Sbjct: 83 WAVSTGRAPYKTPAGTFRPFRLEKEHYSREWDDAPMPYSIFFTAAGHAIHASNATRQLG- 141 Query: 335 VVRFETSGCVRVR--NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 R + GCVR+ + L + + P ++ I +T Sbjct: 142 --RPASHGCVRLAPSHAAALFTLVRAEGPGATKVTITNGASAGRTAR 186 >gi|50843612|ref|YP_056839.1| rare lipoprotein A (RlpA) family protein [Propionibacterium acnes KPA171202] gi|289426002|ref|ZP_06427749.1| lipoprotein A-like protein [Propionibacterium acnes SK187] gi|289427943|ref|ZP_06429647.1| lipoprotein A-like protein [Propionibacterium acnes J165] gi|295131694|ref|YP_003582357.1| lipoprotein A-like protein [Propionibacterium acnes SK137] gi|50841214|gb|AAT83881.1| rare lipoprotein A (RlpA) family protein [Propionibacterium acnes KPA171202] gi|289153545|gb|EFD02259.1| lipoprotein A-like protein [Propionibacterium acnes SK187] gi|289158826|gb|EFD07026.1| lipoprotein A-like protein [Propionibacterium acnes J165] gi|291377050|gb|ADE00905.1| lipoprotein A-like protein [Propionibacterium acnes SK137] gi|313765634|gb|EFS36998.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL013PA1] gi|313808349|gb|EFS46816.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL087PA2] gi|313810700|gb|EFS48414.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL083PA1] gi|313816578|gb|EFS54292.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL059PA1] gi|313821110|gb|EFS58824.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL036PA1] gi|313824034|gb|EFS61748.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL036PA2] gi|313827221|gb|EFS64935.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL063PA1] gi|313829657|gb|EFS67371.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL063PA2] gi|313831478|gb|EFS69192.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL007PA1] gi|313833473|gb|EFS71187.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL056PA1] gi|314916618|gb|EFS80449.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL005PA4] gi|314918921|gb|EFS82752.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL050PA1] gi|314920932|gb|EFS84763.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL050PA3] gi|314926923|gb|EFS90754.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL036PA3] gi|314931427|gb|EFS95258.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL067PA1] gi|314956652|gb|EFT00904.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL027PA1] gi|314959530|gb|EFT03632.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL002PA1] gi|314968868|gb|EFT12966.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL037PA1] gi|314974828|gb|EFT18923.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL053PA1] gi|314977845|gb|EFT21939.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL045PA1] gi|314979555|gb|EFT23649.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL072PA2] gi|314984745|gb|EFT28837.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL005PA1] gi|314988398|gb|EFT32489.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL005PA2] gi|314990295|gb|EFT34386.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL005PA3] gi|315083839|gb|EFT55815.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL027PA2] gi|315087248|gb|EFT59224.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL002PA3] gi|315089665|gb|EFT61641.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL072PA1] gi|315095615|gb|EFT67591.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL038PA1] gi|315100299|gb|EFT72275.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL059PA2] gi|315102419|gb|EFT74395.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL046PA1] gi|315107740|gb|EFT79716.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL030PA1] gi|327326672|gb|EGE68460.1| lipoprotein A family protein [Propionibacterium acnes HL096PA3] gi|327332934|gb|EGE74666.1| lipoprotein A family protein [Propionibacterium acnes HL096PA2] gi|327448639|gb|EGE95293.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL043PA1] gi|327449510|gb|EGE96164.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL013PA2] gi|327451136|gb|EGE97790.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL043PA2] gi|327455754|gb|EGF02409.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL087PA3] gi|328757070|gb|EGF70686.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL025PA2] gi|328757265|gb|EGF70881.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL087PA1] gi|328757453|gb|EGF71069.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL020PA1] gi|328761985|gb|EGF75492.1| lipoprotein A family protein [Propionibacterium acnes HL099PA1] gi|332676558|gb|AEE73374.1| rare lipoprotein A (RlpA) family protein [Propionibacterium acnes 266] Length = 343 Score = 40.8 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 198 >gi|332976792|gb|EGK13622.1| type III effector HopAJ2 [Psychrobacter sp. 1501(2011)] Length = 441 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Query: 86 QDILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + I+ + G WP +PL +S V+ L++RL +G +KG+ +A Sbjct: 363 RGIIGQPGIQKSWPRY-EKPL----TSSQVRNLQQRLTSAGY--DTKGVDGIMGTNTRNA 415 Query: 142 VKLFQMRHGLDPSGMVD 158 +Q +G P G V Sbjct: 416 FARWQAANGQTPDGFVT 432 >gi|281200353|gb|EFA74573.1| hypothetical protein PPL_11541 [Polysphondylium pallidum PN500] Length = 724 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L+ G LD S + + + A+K Q H L +G D ST++ Sbjct: 353 LLSIGSLDESADRN-LYTTQTQDAIKKLQSTHNLPDTGEADPSTIK 397 >gi|206597316|gb|ACI15752.1| FI01410p [Drosophila melanogaster] Length = 613 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 66 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 125 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 126 DRVGTGDSRSKRYALQGSRWR 146 >gi|83951618|ref|ZP_00960350.1| hypothetical protein ISM_13685 [Roseovarius nubinhibens ISM] gi|83836624|gb|EAP75921.1| hypothetical protein ISM_13685 [Roseovarius nubinhibens ISM] Length = 390 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G SS ++ L+ +L G + A +AV+ Q + GL Sbjct: 320 GAPVFDAGNPDPGLSSAQMKELQAKLAQRGY--DVGKIDGILGAGTRAAVQDVQQKLGLP 377 Query: 153 PS 154 Sbjct: 378 AD 379 >gi|313793623|gb|EFS41654.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL110PA1] gi|313802934|gb|EFS44145.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL110PA2] gi|313839433|gb|EFS77147.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL086PA1] gi|314964726|gb|EFT08826.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL082PA1] gi|315082422|gb|EFT54398.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL078PA1] gi|327455956|gb|EGF02611.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL092PA1] Length = 343 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 198 >gi|225685937|ref|YP_002733909.1| lytic murein transglycosylase [Brucella melitensis ATCC 23457] gi|256261850|ref|ZP_05464382.1| lytic Murein transglycosylase [Brucella melitensis bv. 2 str. 63/9] gi|225642042|gb|ACO01955.1| lytic murein transglycosylase [Brucella melitensis ATCC 23457] gi|263091326|gb|EEZ15862.1| lytic Murein transglycosylase [Brucella melitensis bv. 2 str. 63/9] gi|326410256|gb|ADZ67320.1| lytic murein transglycosylase [Brucella melitensis M28] gi|326553549|gb|ADZ88188.1| lytic murein transglycosylase [Brucella melitensis M5-90] Length = 412 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + A +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYD--GKIDGKIGATSRAALEAFQQRNGLEPDGHPSKEVLSVLRR 411 >gi|254486853|ref|ZP_05100058.1| peptidoglycan binding domain protein [Roseobacter sp. GAI101] gi|214043722|gb|EEB84360.1| peptidoglycan binding domain protein [Roseobacter sp. GAI101] Length = 386 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 2/83 (2%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 D ++ GG + P G + + L++RL G + G A+ Sbjct: 306 HLSDRIAGGGPIQAKFGPDRYGLTIDDRKALQQRLTARGF--DTDGTDGVIGPNSRKAIA 363 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 +Q GL +G + L+ ++ Sbjct: 364 AYQQSVGLSATGDPSRALLDRLS 386 >gi|163746090|ref|ZP_02153449.1| Peptidoglycan-binding domain 1 [Oceanibulbus indolifex HEL-45] gi|161380835|gb|EDQ05245.1| Peptidoglycan-binding domain 1 [Oceanibulbus indolifex HEL-45] Length = 629 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 16/199 (8%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + L+ L +G D + AF +++ +Q +G D +G++ + A+ Sbjct: 204 SSEERKDLQVALQWAGFYD--AAIDGAFGRGTRASMGAWQAANGYDQTGVLTTRQRAALI 261 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 + + L + ++R + + +P A +E G V Sbjct: 262 AQYNAVLDGLGLQMVRDD--------KAGIEIMMPTAEVEFARYEPPFAHYDAS-GNVGA 312 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 + ++ NR + I + +++ + P+ ++ +I E G + +V Sbjct: 313 RVLLISQPGNRDTLYGLYDI---MQTLEIVP--LEGPRERARDSFELIGENGSIISQTQV 367 Query: 287 DWNSPEPPNFIFRQDPGKI 305 + F G Sbjct: 368 SLEDGQIKGFTLIWPAGDE 386 >gi|17988368|ref|NP_541001.1| membrane-bound lytic murein transglycosylase B [Brucella melitensis bv. 1 str. 16M] gi|256042995|ref|ZP_05445941.1| membrane-bound lytic murein transglycosylase B [Brucella melitensis bv. 1 str. Rev.1] gi|256112021|ref|ZP_05452966.1| membrane-bound lytic murein transglycosylase B [Brucella melitensis bv. 3 str. Ether] gi|260564228|ref|ZP_05834713.1| lytic murein transglycosylase [Brucella melitensis bv. 1 str. 16M] gi|265989432|ref|ZP_06101989.1| lytic Murein transglycosylase [Brucella melitensis bv. 1 str. Rev.1] gi|265993467|ref|ZP_06106024.1| lytic Murein transglycosylase [Brucella melitensis bv. 3 str. Ether] gi|17984146|gb|AAL53265.1| membrane-bound lytic murein transglycosylase b [Brucella melitensis bv. 1 str. 16M] gi|260151871|gb|EEW86964.1| lytic murein transglycosylase [Brucella melitensis bv. 1 str. 16M] gi|262764337|gb|EEZ10369.1| lytic Murein transglycosylase [Brucella melitensis bv. 3 str. Ether] gi|263000101|gb|EEZ12791.1| lytic Murein transglycosylase [Brucella melitensis bv. 1 str. Rev.1] Length = 412 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + A +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYD--GKIDGKIGATSRAALEAFQQRNGLEPDGHPSKEVLSVLRR 411 >gi|332706111|ref|ZP_08426182.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] gi|332355089|gb|EGJ34558.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] Length = 47 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + + F + AV+ FQ+ GL +G+V T A++ Sbjct: 1 TGKIDGIFASLTLEAVQRFQLDRGLLGNGVVSEHTWNALS 40 >gi|269468191|gb|EEZ79887.1| membrane-bound lytic murein transglycosylase B [uncultured SUP05 cluster bacterium] Length = 149 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 3/75 (4%) Query: 93 GWPELPIRPLH-LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G P+L P+ S + ++ L G + +A + +Q + L Sbjct: 77 GTPQLFATPIKEPSLSRDDITHIQTMLNQLGF--DTGEPDGISGPKTRNATRDYQRANNL 134 Query: 152 DPSGMVDSSTLEAMN 166 G V + + Sbjct: 135 PIDGYVGYQLFQQLQ 149 >gi|229551060|ref|ZP_04439785.1| peptidoglycan binding domain protein [Lactobacillus rhamnosus LMS2-1] gi|258538230|ref|YP_003172729.1| YkuG protein [Lactobacillus rhamnosus Lc 705] gi|229315655|gb|EEN81628.1| peptidoglycan binding domain protein [Lactobacillus rhamnosus LMS2-1] gi|257149906|emb|CAR88878.1| YkuG protein [Lactobacillus rhamnosus Lc 705] Length = 775 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 9/101 (8%) Query: 73 ETIAQTEKAIAFYQDILSRG-GWPELP-------IRPLHLGNSSVSVQRLRERLIISGDL 124 TI +A+ I S G G+ + L G Q ++ G + Sbjct: 35 ATIYALREALQHELGISSIGEGFGTATRTALSGVVDQLKPGYKGNIAQLIQGAFWCKG-I 93 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +P L+ F A E A K Q GL G V + + A+ Sbjct: 94 NPGTELNQNFSAETEQAFKSLQQDAGLTADGTVTVNLMAAL 134 >gi|91974696|ref|YP_567355.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91681152|gb|ABE37454.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB5] Length = 454 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G + ++ L +GD + ++ + +A+K FQ HG P+ Sbjct: 47 PAETAKSMAQGER----EAIQSDLAWTGDY--NGVINGEASDRMVAAIKAFQNNHGAKPT 100 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+++ + R+LQ N Sbjct: 101 GVLNPQERAQL----AEAARKLQGN 121 >gi|294625350|ref|ZP_06703986.1| type III secretion system hopAJ-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600368|gb|EFF44469.1| type III secretion system hopAJ-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 425 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 + WP+ PL NS+ + L++RL G G+ A ++ FQ Sbjct: 354 QQPWPK-DDPPL---NSTAQITELQQRLTDKGF--DVGGIDGVLGARTRQGIRAFQRSQQ 407 Query: 151 LDPSGMVDSSTLEAMNV 167 L G +S L + Sbjct: 408 LPQDGYASTSLLARLRA 424 >gi|86137700|ref|ZP_01056276.1| hypothetical protein MED193_07558 [Roseobacter sp. MED193] gi|85825292|gb|EAQ45491.1| hypothetical protein MED193_07558 [Roseobacter sp. MED193] Length = 529 Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 7/100 (7%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDS--STLE 163 + V LR+ L +G G S DA + A+ FQ + G +VD T + Sbjct: 25 TGKDVSLLRDMLAANG--IGPLGQSAKIDAGLIKAINHFQKKVGFKVTDSVVDPGGRTFK 82 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 A+ ++ L+ L + K + +L N Sbjct: 83 ALLPKYQKALKALEKASREP--LYQMKFKGKTILCNKADY 120 >gi|45383954|ref|NP_990528.1| matrix metalloproteinase-16 [Gallus gallus] gi|1519365|gb|AAB07491.1| membrane type-matrix metalloproteinase [Gallus gallus] Length = 608 Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|182680540|ref|YP_001834686.1| lytic murein transglycosylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636423|gb|ACB97197.1| lytic murein transglycosylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 419 Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + ++ L+ G D A+ FQ RHGL P+G +S L Sbjct: 357 PGLSRAERREVQALLMRQGY-DLDGKADGVIGTKSRQAISDFQQRHGLAPNGRASASVLA 415 Query: 164 AMNV 167 A+ Sbjct: 416 ALRR 419 >gi|125974431|ref|YP_001038341.1| carboxyl-terminal protease [Clostridium thermocellum ATCC 27405] gi|256005216|ref|ZP_05430184.1| carboxyl-terminal protease [Clostridium thermocellum DSM 2360] gi|281418956|ref|ZP_06249974.1| carboxyl-terminal protease [Clostridium thermocellum JW20] gi|125714656|gb|ABN53148.1| carboxyl-terminal protease [Clostridium thermocellum ATCC 27405] gi|255990870|gb|EEU00984.1| carboxyl-terminal protease [Clostridium thermocellum DSM 2360] gi|281407413|gb|EFB37673.1| carboxyl-terminal protease [Clostridium thermocellum JW20] gi|316941567|gb|ADU75601.1| carboxyl-terminal protease [Clostridium thermocellum DSM 1313] Length = 505 Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V + L G D AV FQ GL G++D +T +A+ Sbjct: 422 AQSEDVLNAEKILSALGY--DVDTPDNLMDEKTVKAVAEFQRDCGLYSYGVLDFATQQAL 479 Query: 166 N 166 N Sbjct: 480 N 480 >gi|298490028|ref|YP_003720205.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298231946|gb|ADI63082.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 225 Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 5/86 (5%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 R L G D ++ A+ FQ + L G T ++ Sbjct: 42 RAVLHGLGY-SVKVTNDALTDEEIKKAISEFQKGYKLTVDGKAGQKTQAF----AANIVK 96 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNI 200 LQ NL K ++ + Sbjct: 97 ILQGNLNAALKPNPPLPRDQFYSPRM 122 Score = 37.7 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V+ L+ L + +P + +E VK +Q ++ L +G+ D + ++ Sbjct: 95 VKILQGNLNAALKPNPPLPRDQFYSPRMEKLVKEYQKKNQLTETGIADLVLRQKLDENAK 154 Query: 171 LRIRQ 175 I Q Sbjct: 155 KAIGQ 159 >gi|188580147|ref|YP_001923592.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium populi BJ001] gi|179343645|gb|ACB79057.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium populi BJ001] Length = 250 Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 21/116 (18%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP---------------IRPLHLGNS 107 + IP +A ++ A A +D W L R L +G + Sbjct: 128 VRRAIPA--PRVLAHSDVAPARKEDPGENFPWERLAQEGVGHWVPPAPVRDGRFLAMGET 185 Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTL 162 V+ L+ L + G ++ ++ FDA + V FQ G+ DSST+ Sbjct: 186 GQPVEALQAMLALYGY---AQPVTGQFDAATGAVVTAFQRHFRPARIDGVADSSTI 238 >gi|329945494|ref|ZP_08293234.1| peptidoglycan binding domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328528849|gb|EGF55791.1| peptidoglycan binding domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 373 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 ++ V +L L G D F SA+ +Q GL +G + Sbjct: 130 DNGEDVHQLETLLRDMGYFDYEP--DNHFSWATTSAIMKWQKAVGLPQTGTI 179 >gi|21243951|ref|NP_643533.1| transglycosylase [Xanthomonas axonopodis pv. citri str. 306] gi|21109562|gb|AAM38069.1| transglycosylase [Xanthomonas axonopodis pv. citri str. 306] Length = 425 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 NS+ + L++RL G G+ A ++ FQ L G +S L Sbjct: 363 PLNSTAQITELQQRLTDKGF--DVGGIDGVLGAQTRQGIRAFQRSQQLPQDGYASTSLLA 420 Query: 164 AMNV 167 + Sbjct: 421 RLRA 424 >gi|78047996|ref|YP_364171.1| lytic murein transglycosylase precursor [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|38564795|gb|AAR23828.1| putative murein transglycosylase precursor [Xanthomonas euvesicatoria] gi|78036426|emb|CAJ24117.1| Lytic murein transglycosylase precursor [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 425 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 NS+ + L++RL G G+ A ++ FQ L G +S L Sbjct: 363 PLNSTAQITELQQRLTDKGF--DVGGIDGVLGAQTRQGIRAFQRSQQLPQDGYASTSLLA 420 Query: 164 AMNV 167 + Sbjct: 421 RLRA 424 >gi|313771652|gb|EFS37618.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL074PA1] gi|313818038|gb|EFS55752.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL046PA2] Length = 329 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 128 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 184 >gi|303248615|ref|ZP_07334870.1| Peptidoglycan-binding domain 1 protein [Desulfovibrio fructosovorans JJ] gi|302489965|gb|EFL49889.1| Peptidoglycan-binding domain 1 protein [Desulfovibrio fructosovorans JJ] Length = 384 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 14/132 (10%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V + RL G + D + A+K +Q GL P+ S LE + Sbjct: 93 VADTQNRLSALGWYP--GPVDGRLDRMTKWAIKSYQTAVGLPPNPAASESLLEELARNPV 150 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP----AASLEAVENGKVGLRSTVIVGRVDR 226 + + + +V P A N + R G + Sbjct: 151 RAPENIA--------YPDFSAREVHDIVLTPQRLGEAREFYARNREALSRVRQRYGVPEE 202 Query: 227 QTPILHSRINRI 238 L + R+ Sbjct: 203 YLVALLAVETRV 214 >gi|166364350|ref|YP_001656623.1| hypothetical protein MAE_16090 [Microcystis aeruginosa NIES-843] gi|166086723|dbj|BAG01431.1| hypothetical protein MAE_16090 [Microcystis aeruginosa NIES-843] Length = 616 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S S++ ++ + G + + E + FQ + L+ G++ T A Sbjct: 183 MESESIRLWQKCMKERGY---PIEVDGEYGPNSERICREFQAKMKLEVDGVIGRDTWNAS 239 Query: 166 NVPVDL 171 Sbjct: 240 WRQPKQ 245 >gi|221468755|ref|NP_726473.2| matrix metalloproteinase 1, isoform C [Drosophila melanogaster] gi|21392160|gb|AAM48434.1| RE62222p [Drosophila melanogaster] gi|60677889|gb|AAX33451.1| RE19818p [Drosophila melanogaster] gi|220902386|gb|AAF47255.3| matrix metalloproteinase 1, isoform C [Drosophila melanogaster] Length = 584 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 97 DRVGTGDSRSKRYALQGSRWR 117 >gi|56698311|ref|YP_168684.1| peptidoglycan binding domain-containing protein [Ruegeria pomeroyi DSS-3] gi|56680048|gb|AAV96714.1| peptidoglycan binding domain protein [Ruegeria pomeroyi DSS-3] Length = 423 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 RG WP R L L + L+ERL +G ++ + +AV+ +Q+ G Sbjct: 352 RGNWPR-ADRALTL---DERI-ELQERLTAAGF--NTQKIDGKIGPLTINAVRDYQLDQG 404 Query: 151 LDPSGMVDSSTLEAMN 166 L P G LE + Sbjct: 405 LAPDGYASLRVLERLR 420 >gi|81157905|dbj|BAE48203.1| matrix metalloproteinase 9 [Paralichthys olivaceus] Length = 267 Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 11/131 (8%) Query: 88 ILSRGGWPELPIRPLH---LGNSSVSVQR--LRE-RLIISGDLDPSKGLSVAFDAYVESA 141 ++ + GW LP+R + G+ +V L E L G LD A Sbjct: 21 VIVQDGW-SLPLRSISVTFPGDILKNVTDTDLAETYLKRFGYLDKMHRSGFQSMVSTAKA 79 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVP--VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +K+ Q + GL +G +D STLEAM P + Q +K + L Sbjct: 80 LKMMQRQMGLKETGRLDKSTLEAMKQPRCGVPDVANYQTFEGDLKW--DHNDVTYRTLNY 137 Query: 200 IPAASLEAVEN 210 P +++ Sbjct: 138 SPDMESSLIDD 148 >gi|311270531|ref|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-17 [Sus scrofa] Length = 592 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 21/114 (18%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------- 168 L G L P + + A+ Q GL+ +G++D +TL M P Sbjct: 51 LSRFGYLPPPDPATGQLQTQEELAKAIAAMQRFGGLEATGVLDEATLALMKTPRCSLPDL 110 Query: 169 -----VDLRIRQLQVNL-------MRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 R + L R++ R + + +L+ + Sbjct: 111 PASASARRRRQALAPTKWNKRNLSWRVRTFPRDSPLGRDTVRALMHYALKVWSD 164 >gi|218530973|ref|YP_002421789.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218523276|gb|ACK83861.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 214 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 12/71 (16%) Query: 308 MASTKIEFYSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLK 358 + + + +H T + R + GCVR+ RN L + + Sbjct: 77 FSREWDNAPMPHAIFFTQVGHAIHGTTYTR---RLGRAASHGCVRLSQRNAATLFTLVKQ 133 Query: 359 DTPTWSRYHIE 369 +R IE Sbjct: 134 QKMANTRVVIE 144 >gi|85858976|ref|YP_461179.1| erfK/ybiS/ycfS/ynhG family protein [Syntrophus aciditrophicus SB] gi|85722067|gb|ABC77010.1| erfK/ybiS/ycfS/ynhG family protein [Syntrophus aciditrophicus SB] Length = 218 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 17/137 (12%) Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 + N+++ + + +++ D+ L + I + Sbjct: 87 KTAGNKLLPRREYKVGTAVLGLDVYPLGKGQVTA-----IDFYPSWYPT--PYSREVFRK 139 Query: 292 EPPNFIFRQDPG-KINAMASTKIEFYS---RNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 PG +N M + KI + Y +H P V R T GC + Sbjct: 140 RGIELPPAVPPGHPLNYMGAAKISLSHRTRKGAIYRIHGNNNP---GRVGRRVTGGCFVM 196 Query: 347 RN--IIDLDVWLLKDTP 361 N +++L + T Sbjct: 197 YNDDVLELARTISVGTE 213 >gi|315109341|gb|EFT81317.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL030PA2] Length = 328 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 127 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 183 >gi|330468304|ref|YP_004406047.1| hypothetical protein VAB18032_21735 [Verrucosispora maris AB-18-032] gi|328811275|gb|AEB45447.1| hypothetical protein VAB18032_21735 [Verrucosispora maris AB-18-032] Length = 928 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 46/155 (29%), Gaps = 34/155 (21%) Query: 92 GGWPELP-------IRPLHLGNSSVS--------------VQRLRERLIISGDLDPSKGL 130 G WP P PL LG+S V+ L++ L G + Sbjct: 365 GSWPVAPRALDTYGAHPLRLGDSDADGRYGGIAHGEPGTHVRLLQQHLTQLGFPTSPDPV 424 Query: 131 SVAFDAYVESAVKLFQ------MRHGLDPS---GMVDSSTLEAMNVPVDLRIRQLQVNLM 181 F SA++ FQ H L VD + L A+ L + Sbjct: 425 GS-FGPRTASALREFQISARFARVHKLRLDEAGNPVDPAVLPAVRRYHGRINGCLNPDTA 483 Query: 182 RI--KKLLEQKMG-LRYVLVNIPAASLEAVENGKV 213 + L G + A ++A G+V Sbjct: 484 TLLKTWLTPDAKGLQTRNAATVDAYRMQADVPGEV 518 >gi|320544348|ref|NP_001189002.1| matrix metalloproteinase 1, isoform H [Drosophila melanogaster] gi|318068688|gb|ADV37248.1| matrix metalloproteinase 1, isoform H [Drosophila melanogaster] Length = 554 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 97 DRVGTGDSRSKRYALQGSRWR 117 >gi|239834506|ref|ZP_04682834.1| lytic murein transglycosylase [Ochrobactrum intermedium LMG 3301] gi|239822569|gb|EEQ94138.1| lytic murein transglycosylase [Ochrobactrum intermedium LMG 3301] Length = 441 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + + +A++ FQ R+GL P G L + Sbjct: 388 ELQTHLKALGYYDGN--IDGKIGSTSRAAIEAFQQRNGLQPDGHPSKEVLSVLRR 440 >gi|195489771|ref|XP_002092878.1| GE11424 [Drosophila yakuba] gi|194178979|gb|EDW92590.1| GE11424 [Drosophila yakuba] Length = 586 Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 97 DRVGTGDSRSKRYALQGSRWR 117 >gi|194886655|ref|XP_001976657.1| GG19900 [Drosophila erecta] gi|190659844|gb|EDV57057.1| GG19900 [Drosophila erecta] Length = 584 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQQTWVSAIEEFQNFAGLNITGELDAETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 97 DRVGTGDSRSKRYALQGSRWR 117 >gi|163732767|ref|ZP_02140212.1| peptidoglycan binding domain protein [Roseobacter litoralis Och 149] gi|161394127|gb|EDQ18451.1| peptidoglycan binding domain protein [Roseobacter litoralis Och 149] Length = 376 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + L+ RL G ++G ++A++ +Q GL +G+ L Sbjct: 321 KDDRI-ALQTRLTARGF--DTQGSDGVIGPNSQAAIRAYQASQGLPVTGVPSQQLLS 374 >gi|297263898|ref|XP_002798895.1| PREDICTED: matrix metalloproteinase-17-like [Macaca mulatta] Length = 845 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 113 RLRERLIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 L+E L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 291 LLKEWLSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMRTPRC 350 Query: 171 LRIRQLQVNLMRIKKLLEQK 190 + R ++ Sbjct: 351 SLPDLPVLTQARRRRQAPAP 370 >gi|224046469|ref|XP_002199883.1| PREDICTED: matrix metalloproteinase 16 [Taeniopygia guttata] Length = 609 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|149374881|ref|ZP_01892654.1| hypothetical protein MDG893_07485 [Marinobacter algicola DG893] gi|149360770|gb|EDM49221.1| hypothetical protein MDG893_07485 [Marinobacter algicola DG893] Length = 300 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAMNVPVDLRIRQL 176 L +G D + SA++ +Q H GL +G +D TL A+ + + Sbjct: 39 LYGAGY--DIGKADGWMDDTLRSAIRKYQSGHEGLQATGDLDPQTLSALGIAAKD---AV 93 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 N ++ G+ P A Sbjct: 94 TGNSAPSREGAMADAGVSKQRFGSPDAE 121 >gi|114320482|ref|YP_742165.1| ErfK/YbiS/YcfS/YnhG family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226876|gb|ABI56675.1| ErfK/YbiS/YcfS/YnhG family protein [Alkalilimnicola ehrlichii MLHE-1] Length = 177 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 Y+H P+ + GC+R+RN + Sbjct: 123 IYIHGCPDECPMGIP---LSHGCIRMRNTDVIA 152 >gi|103484506|dbj|BAE94745.1| membrane type-matrix metalloproteinase 16 [Gallus gallus] Length = 609 Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|308497310|ref|XP_003110842.1| CRE-ZMP-1 protein [Caenorhabditis remanei] gi|308242722|gb|EFO86674.1| CRE-ZMP-1 protein [Caenorhabditis remanei] Length = 322 Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L G + + A+K Q GL+ +G +D T M P Sbjct: 27 LQKYGYLPR--GSNQVSSESLSEALKNMQRMAGLEETGELDERTKRMMERP 75 >gi|299131934|ref|ZP_07025129.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Afipia sp. 1NLS2] gi|298592071|gb|EFI52271.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Afipia sp. 1NLS2] Length = 257 Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 4/57 (7%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDS 159 LG +S + L+ L+ G S +D AV FQ + G+ D Sbjct: 184 LGTTSDEIMALQRALVRYGY---PVLPSGQYDGVTMDAVAAFQRHFRPERVDGIADQ 237 >gi|285808350|gb|ADC35879.1| hypothetical protein [uncultured bacterium 246] Length = 97 Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 ++ L G +DA +A++ FQ +G++ +G +DS +L +N+ Sbjct: 13 EIQSALAKEGYF--QGPADGVWDASSVAALQKFQQENGIEATGKIDSLSLIKLNLGPK 68 >gi|170744460|ref|YP_001773115.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168198734|gb|ACA20681.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 513 Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Query: 114 LRER------LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 LR R LI +G + + A+K FQ ++G+ P G+++ ST + + Sbjct: 39 LRSRVIAQVLLIATGH--QTSVPTENLGLRTFEAIKRFQEQNGIWPDGVLNKSTHDRLFA 96 Query: 168 PVDL 171 Sbjct: 97 TAAP 100 >gi|148241564|ref|YP_001226721.1| hypothetical protein SynRCC307_0465 [Synechococcus sp. RCC307] gi|147849874|emb|CAK27368.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 126 Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 39/175 (22%), Gaps = 59/175 (33%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++V++ L A ++ V G+ TP S++ Sbjct: 9 IVVDLSDQKLYAYNGPQLVRTIPVSSGKASTPTPTFSSKVQSK----------------- 51 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + + V V W P Sbjct: 52 --------------HRSVTMRGRGYVAPG-VPWAMCVPGGM------------------- 77 Query: 316 YSRNNTYMHDTPEPILFNNVVR-FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 MH P + GCVR+ WL T T + I+ Sbjct: 78 -----ICMHGAPWQEAAGQPYGVPRSHGCVRM--PTVQAKWLFHRTKTGTPITIQ 125 >gi|327458105|gb|EGF04760.1| bacterial SH3 domain protein [Propionibacterium acnes HL083PA2] Length = 289 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + + ++ L K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYFPA-KWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTL 198 >gi|326917841|ref|XP_003205203.1| PREDICTED: matrix metalloproteinase-16-like [Meleagris gallopavo] Length = 609 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|7341370|gb|AAF61270.1|AF244994_1 membrane type-3 matrix metalloproteinase [Scyliorhinus torazame] Length = 613 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L S+ + SAV Q +G+ +G +D +T++ M P D Sbjct: 51 LQKYGYLQASEPRMSVLRSSQSMHSAVAAMQQFYGIKVTGTLDENTIDWMKKPRCGVPDQ 110 Query: 172 RIRQLQVNLMRIKK-LLEQKMGLRYVLVNIPAAS 204 ++ ++ R + L QK +++ +I + Sbjct: 111 FGSSIRFSVRRKRYALTGQKWHHKHITYSIKNFT 144 >gi|93005492|ref|YP_579929.1| lytic murein transglycosylase [Psychrobacter cryohalolentis K5] gi|92393170|gb|ABE74445.1| Lytic murein transglycosylase [Psychrobacter cryohalolentis K5] Length = 433 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 11/79 (13%) Query: 86 QDILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + ++ +GG WP RPL S+ V+ L++RL SG +KG +A Sbjct: 354 KALIGQGGLQKSWPRY-ERPL----STSQVRNLQQRLTSSGY--DTKGSDGIVGTNTRNA 406 Query: 142 VKLFQMRHGLDPSGMVDSS 160 + +Q +G P G + Sbjct: 407 FQRWQAANGQTPDGFITQR 425 >gi|294664919|ref|ZP_06730235.1| type III secretion system hopAJ-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605319|gb|EFF48654.1| type III secretion system hopAJ-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 425 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 NS+ + L++RL G G+ A ++ FQ L G +S L Sbjct: 363 PLNSTAQITELQQRLTDKGF--DVGGIDGVLGARTRQGIRAFQRSQQLPQDGYASTSLLA 420 Query: 164 AMNV 167 + Sbjct: 421 RLRA 424 >gi|170063963|ref|XP_001867331.1| vitronectin [Culex quinquefasciatus] gi|167881406|gb|EDS44789.1| vitronectin [Culex quinquefasciatus] Length = 488 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Query: 118 LIISGDLDPSKGLSVAFDAYVESA--------VKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G DA + + ++ FQ +GL+ +G++D T A+ P Sbjct: 67 LVGLGYNKEDAKSGSVVDARLSDSDVRSLTELIRKFQEDNGLEVNGVLDDETKLAIGSP 125 >gi|47220689|emb|CAG11758.1| unnamed protein product [Tetraodon nigroviridis] Length = 439 Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 115 RERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + LI G L + + V A+++FQ + L P+G D +T++ M P Sbjct: 3 QAYLIKYGYLKDAADQEDPQYLEEVIEALRVFQKANDLLPTGEPDEATIQVMRQP 57 >gi|307941473|ref|ZP_07656828.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] gi|307775081|gb|EFO34287.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] Length = 1408 Score = 40.8 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + +L G + SAV+ FQ GL +G +D++ ++ +N Sbjct: 1355 QTKLNALGF--NAGAPDGQTGPQTRSAVRAFQRSLGLPETGDIDAALIKELN 1404 >gi|227822672|ref|YP_002826644.1| lytic murein transglycosylase [Sinorhizobium fredii NGR234] gi|227341673|gb|ACP25891.1| lytic murein transglycosylase [Sinorhizobium fredii NGR234] Length = 405 Score = 40.8 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 17/149 (11%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID--SDIPIISKETIA 76 +G++ + L+ + + ++ + Sbjct: 272 WFALGVAPRDGNTSHGALEASLVLPQGRKGVAFLT--YPNFKIYLEWNQSFIYTTSAAYF 329 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 T A G P G ++ L+ +L G + + Sbjct: 330 ATRLA-----------GAPPYQAGNPEPGLGDTEMKTLQTKLQALGH--DVGKIDGILGS 376 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A++ Q++ GL G L+A+ Sbjct: 377 GTRTALQKEQLKLGLPADGWATPDLLQAL 405 >gi|117921513|ref|YP_870705.1| peptidoglycan binding domain-containing protein [Shewanella sp. ANA-3] gi|117613845|gb|ABK49299.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. ANA-3] Length = 562 Score = 40.8 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 FD +E+ +K FQ +HGL G+ + TL Sbjct: 513 FDLKLENDLKAFQSQHGLKADGIAGNQTL 541 >gi|312883788|ref|ZP_07743507.1| hypothetical protein VIBC2010_14344 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368537|gb|EFP96070.1| hypothetical protein VIBC2010_14344 [Vibrio caribbenthicus ATCC BAA-2122] Length = 489 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 22/174 (12%) Query: 29 KPIHASVLDEIINESYHSIVN--DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ 86 + D+ I E+ H + + + +S E I + ++ + Sbjct: 128 GDLSKGTFDQGIIENAHEPSDRIETKTSPAPSPQQATESAKNDSEDELI--LKSSLKQSK 185 Query: 87 DI--LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + L+ G + L + + ++++++ LI G G F E AVK Sbjct: 186 PLNELAAGKFNALKKGSIE----TEEIKKVQQALIDCGFNLGKFGADGDFGRATEGAVKQ 241 Query: 145 FQMRH-----------GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 FQ + + G+VD +T+ A++ + + + + K L Sbjct: 242 FQAHYKPTHTTHKSYQFGNVDGIVDKNTILALDEAIKEGWKFVDDEM-DQKWLT 294 >gi|213423298|ref|ZP_03356292.1| hypothetical protein Salmonentericaenterica_37912 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 38 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 1/35 (2%) Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPE 328 + G N M I + Y +H T Sbjct: 1 DLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNA 35 >gi|150018201|ref|YP_001310455.1| peptidoglycan binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904666|gb|ABR35499.1| Peptidoglycan-binding domain 1 protein [Clostridium beijerinckii NCIMB 8052] Length = 309 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +Q ++++L G + G++ + V FQ +GL GMV SSTL A+ Sbjct: 67 DIQLIQQQLNSKGYVLTVDGIAGI---NTYNTVVKFQRENGLVADGMVGSSTLAAL 119 >gi|148255717|ref|YP_001240302.1| hypothetical protein BBta_4352 [Bradyrhizobium sp. BTAi1] gi|146407890|gb|ABQ36396.1| hypothetical protein BBta_4352 [Bradyrhizobium sp. BTAi1] Length = 486 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 ++ RL G ++ FD + +K +Q G +G + +A+ Sbjct: 365 IQRRLTGLGF---DTKMTGVFDDETRAVMKRWQAARGYPATGFMTKLQHKALLAEPQPAP 421 Query: 174 RQLQVNLM 181 V Sbjct: 422 ATAAVGDE 429 >gi|330830587|ref|YP_004393539.1| general secretion pathway protein A [Aeromonas veronii B565] gi|328805723|gb|AEB50922.1| General secretion pathway protein A [Aeromonas veronii B565] Length = 522 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSST---LEAMNVPVDLRIR 174 FD +++ ++ FQ GL P G+ S+T L A++ R+ Sbjct: 475 RFDGELKNKLQQFQRDQGLTPDGIAGSNTLLRLNALSGEPMPRLE 519 >gi|197105795|ref|YP_002131172.1| N-acetylmuramoyl-L-alanine amidase [Phenylobacterium zucineum HLK1] gi|196479215|gb|ACG78743.1| N-acetylmuramoyl-L-alanine amidase [Phenylobacterium zucineum HLK1] Length = 248 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 7/83 (8%) Query: 89 LSRGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G W E P + G +V L+ L G S FDA + V F Sbjct: 163 AGHGLWAEAAPAPGAPIGEGEEGAAVFALQAGLTRLGY---DLPPSGRFDADTTTVVSAF 219 Query: 146 QMRHGLD-PSGMVDSSTLEAMNV 167 Q + G+ D T + Sbjct: 220 QRHWRPERIDGIADGETRARLIA 242 >gi|30688744|ref|NP_173824.2| matrixin family protein [Arabidopsis thaliana] gi|53749140|gb|AAU90055.1| At1g24140 [Arabidopsis thaliana] gi|332192361|gb|AEE30482.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana] Length = 384 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + L++ G + S + FD +++AV+++Q L+ +G++D T Sbjct: 55 GKKYDGLYMLKQYFQHFGYITETNLSGNFTDDFDDILKNAVEMYQRNFQLNVTGVLDELT 114 Query: 162 LEAMNVP 168 L+ + +P Sbjct: 115 LKHVVIP 121 >gi|11228711|gb|AAG33131.1|AF271666_1 matrix metalloproteinase 1 [Drosophila melanogaster] Length = 567 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 63 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 122 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 123 DRVGTGDSRSKRYALQGSRWR 143 >gi|254504281|ref|ZP_05116432.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222440352|gb|EEE47031.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 210 Score = 40.8 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMV 157 RP+ V+ +E L G + ++AV +Q +H L G++ Sbjct: 74 ARPVPPSAPDPVVREAQEALTRFGF--DPGVIDGWMGHRTKAAVLAYQRQHPDLVNDGII 131 Query: 158 DSSTLEAMNVPV 169 +TL + Sbjct: 132 GPATLVQLRKDA 143 >gi|126737123|ref|ZP_01752858.1| hypothetical protein RSK20926_11849 [Roseobacter sp. SK209-2-6] gi|126721708|gb|EBA18411.1| hypothetical protein RSK20926_11849 [Roseobacter sp. SK209-2-6] Length = 243 Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 15/164 (9%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V+ L+ L G + A+ F++ GL P V TL Sbjct: 3 QHSYDVRWLQRALQQLGHYK--GRVDGISGPMTRKAIVAFKLSQGLWPRDYVGPITLG-- 58 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 R+R K + +++ L V + +V G Sbjct: 59 ------RLRDAVEVSEPRKFGPDTAPEPPWLVELGKVMGLHEVRDNRVLSDWLRSDGSTL 112 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 L + + +P ++ + + Y N Sbjct: 113 GDPAKLPWCGDAAITALELTLP-----EEPLPKNLEANPYWARN 151 >gi|194302980|ref|YP_002014249.1| gp33 [Mycobacterium phage Boomer] gi|194153028|gb|ACF34095.1| gp33 [Mycobacterium phage Boomer] Length = 333 Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 73/253 (28%), Gaps = 50/253 (19%) Query: 102 LHLGNSSVSVQRLRERLII-----SGDLDPSKGLSVAFDAYVESAVKLFQMRH------- 149 L LG+SS +++++ + +GDL + +D + +AV Q R+ Sbjct: 10 LGLGDSSDEIRKIKAFMRRKFASYAGDL----ADTPLYDEAMTAAVAEMQARYSAAGQLR 65 Query: 150 -GLDPSGMVDSSTLEAMNVPVDL----RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 GL G+V + T M R + V + + + Sbjct: 66 AGLYIPGIVGAETKYVMGYLPRPVVDTRPVLITVCGTGVPWWIGPDAD-----------T 114 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 AVE+ + +G P+ S I + + R ++ + Sbjct: 115 ARAVEDKYLW----QPIGYPAAPFPMGKS-ITAAITEAHNQANR--WRERIETHGAALAG 167 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK-------IEFYS 317 Y + + + + E + +P + + + Sbjct: 168 Y-SQGAVVVSELWMNHIAPETGSLHWMKPHIEKAVTWGNPNRELGHVWADHGGSPMAPSN 226 Query: 318 RNNT---YMHDTP 327 M DTP Sbjct: 227 TQGVSSNGMRDTP 239 >gi|171915574|ref|ZP_02931044.1| hypothetical protein VspiD_30425 [Verrucomicrobium spinosum DSM 4136] Length = 200 Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 37/192 (19%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + ++ L + PV +QL V + G Y++V++ E G V Sbjct: 26 LGANYLAGLGGPVPTAPQQLGVAEPVSYWDDDGSQGESYIVVDLRRQVAEFYRAGHVIGV 85 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 + + G R TP +I L +D ++ + H+ D Sbjct: 86 AAISSGTEMRATPSGDYKI-----------------------LEKDIDHVSSSYGHVEDS 122 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 G V + + P P +N + + MH P Sbjct: 123 AGNAVNNDATPRSPVPPGCKYV---PAPMN----FFMRLTW-DGVGMHQGYLPGY----- 169 Query: 337 RFETSGCVRVRN 348 + GC+R+ Sbjct: 170 -PASHGCIRMDR 180 >gi|326669661|ref|XP_002662954.2| PREDICTED: matrix metalloproteinase-15-like [Danio rerio] Length = 655 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + + +A+ Q +GL+ +G +D T+EAM P D Sbjct: 43 LRMYGYLPQASRQMSTMRSAQILSNAISDMQRFYGLEITGEMDPGTIEAMKRPRCGVPDK 102 Query: 172 RIRQLQVNLMRIK 184 Q++ N+ R + Sbjct: 103 FGAQIKTNVRRKR 115 >gi|294101487|ref|YP_003553345.1| ErfK/YbiS/YcfS/YnhG family protein [Aminobacterium colombiense DSM 12261] gi|293616467|gb|ADE56621.1| ErfK/YbiS/YcfS/YnhG family protein [Aminobacterium colombiense DSM 12261] Length = 167 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 42/166 (25%), Gaps = 61/166 (36%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--------DRQTPILHSRINRIMFNPY 243 ++V L GK L V VGR D +TP+ + RI + + Sbjct: 34 PPDRIVVEKRKFVLTLYREGKEVLSFPVAVGRNKGNKQRVGDLRTPVGTFMVERIHDSSH 93 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 WV + + Sbjct: 94 WV-------------------------------------------HDFKDGKGPI----- 105 Query: 304 KINAMASTKIEFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRN 348 A I + +H T +P R T GCVR+RN Sbjct: 106 -KGAYGPWFIRLKTGWSGIGIHGTHDPGSIGQ--RA-TEGCVRLRN 147 >gi|302536419|ref|ZP_07288761.1| secreted protein [Streptomyces sp. C] gi|302445314|gb|EFL17130.1| secreted protein [Streptomyces sp. C] Length = 235 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 8/109 (7%) Query: 141 AVKLFQMRHGLDPS-GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A++ FQ HG+ P+ G T + M+ + R N +G + Sbjct: 69 AIQSFQATHGITPTMGYAGPLTWQTMSTMLAQRAAGKNPNAE---GKCPVNLGRIACVDL 125 Query: 200 IPAASLEAVENGKVGL--RSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 L +++G V G+ + T +I N + I Sbjct: 126 T--RQLSWIQDGATLKYGPVPVRTGKAETPTRTGLKKIYYRSINHWSTI 172 >gi|254292987|ref|YP_003059010.1| peptidoglycan-binding protein [Hirschia baltica ATCC 49814] gi|254041518|gb|ACT58313.1| Peptidoglycan-binding domain 1 protein [Hirschia baltica ATCC 49814] Length = 323 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 10/99 (10%) Query: 74 TIAQTEKAIAFYQDILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 TI T K I +++ GG W ++ S+ + ++ L +G S Sbjct: 233 TIPATYKTIEK-REVTGGGGIEWRQVLCDT---NTSAAEIAEVQRALTNAGY---SVPAD 285 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 F A +A++ +Q +GL G + ST+E++ + + Sbjct: 286 GVFGAATLTAMESYQRANGLPV-GYLTMSTVESLGLSIR 323 >gi|296130713|ref|YP_003637963.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] gi|296022528|gb|ADG75764.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] Length = 137 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 5/109 (4%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQR 113 A V S + T + + A+ + + G P+ + GN +V Sbjct: 15 AAGALVATAPASTAAGLGSCTAYKQYSSGAYARFVPVNGSTPDCILGK---GNYGNAVWA 71 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 L++ L + S F +K FQ + ++ G+ T Sbjct: 72 LQKALKTCEKYSLAVDKS--FGNETRDVLKKFQTKKKIEVDGIYGPETR 118 >gi|196230143|ref|ZP_03129006.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196225740|gb|EDY20247.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 206 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 47/181 (25%), Gaps = 38/181 (20%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +V+V++ + + +V + + G+ +TP + + RS Sbjct: 64 NPDNSHVIVSLSKQRVYLMVGEQVYIDTPCSTGKRGHETPRGDFHVREKDPDH-----RS 118 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I D + + ++ + + Sbjct: 119 SIYGDFV----------DRGGRVVRSGVSTQIDSAPSGTHYVGA---------------S 153 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 + MH P + GCVR+ D+ + + + IE Sbjct: 154 MKWFCRLTDTGVGMHVGILPGY------AASHGCVRL--PSDIAPLIYQKVKVGTPAVIE 205 Query: 370 E 370 E Sbjct: 206 E 206 >gi|304320863|ref|YP_003854506.1| hypothetical protein PB2503_06492 [Parvularcula bermudensis HTCC2503] gi|303299765|gb|ADM09364.1| hypothetical protein PB2503_06492 [Parvularcula bermudensis HTCC2503] Length = 403 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 8/106 (7%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 + + I AIA + WP R L L + L++ L G Sbjct: 306 MRYNNSTAYALGIGLLSDAIAG-RQSALSTQWPR-DDRSLSLTER----KSLQQTLKERG 359 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + A ++A++ +Q GL G + TL +++ Sbjct: 360 Y--DPGPVDGIIGAGTKAALRAWQRDQGLPADGYASARTLSVLSMN 403 >gi|301610029|ref|XP_002934557.1| PREDICTED: matrix metalloproteinase-19 [Xenopus (Silurana) tropicalis] Length = 440 Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 115 RERLIISGDL--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L G L V+ A+++FQ+ L +G++D T++ M P Sbjct: 67 KRYLQQFGYLQKPLESDTEDFSSEEVQEALRIFQLSTHLPGTGVLDEDTIDKMRQP 122 >gi|312383885|gb|EFR28782.1| hypothetical protein AND_02824 [Anopheles darlingi] Length = 491 Score = 40.4 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 12/90 (13%) Query: 307 AMASTKIEFYSRNNTYMH-DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 + E + YMH +P + V N + L ++L+ TW+ Sbjct: 314 PLGEYWKELVYESG-YMHIQATKPDTIGAAL---------VGNPVGLAAYILEKFSTWTN 363 Query: 366 YHIEEVVKTRKTTPVKLATEV-PVHFVYIS 394 + L + V Y++ Sbjct: 364 KAFRSLPDGGLERYFTLDALLDNVMIYYLT 393 >gi|284515810|gb|ADB91412.1| MIP15906p [Drosophila melanogaster] Length = 541 Score = 40.4 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSKGL---SVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 66 LSQFGYLPASASNPASSGLHDQRTWVSAIEEFQNFAGLNITGELDAETMKLMSLPRCGVR 125 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 126 DRVGTGDSRSKRYALQGSRWR 146 >gi|90418104|ref|ZP_01226016.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Aurantimonas manganoxydans SI85-9A1] gi|90337776|gb|EAS51427.1| conserved hypothetical protein, ErfK/YbiS/YcfS/YnhG family [Aurantimonas manganoxydans SI85-9A1] Length = 142 Score = 40.4 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTPTWSR 365 M+ + +H T + + R + GCVR+ N + K +R Sbjct: 81 MSPMPYSVFYHRGYAIHGT---GAVSRLGRPASHGCVRLHTANAKIFYTMVRKMGMGNTR 137 Query: 366 YHIEE 370 ++ Sbjct: 138 VVVQR 142 >gi|49474017|ref|YP_032059.1| hypothetical protein BQ03770 [Bartonella quintana str. Toulouse] gi|49239520|emb|CAF25877.1| hypothetical protein BQ03770 [Bartonella quintana str. Toulouse] Length = 280 Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI---PIISKETIAQTEKAIAFYQDILS 90 + D ++ + + GI + + PI+ + T+ + +I Sbjct: 143 GLYDGPLDGLEGPKTRRAIALWKQQTADGIQNSVLSKPIVDEITLLIERSEMEMENEITK 202 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P L + ++++ L I G + ++ D A+K FQ G Sbjct: 203 TKDLPHSTETVLEPPVVD--IIKVQKALRIFG--NQEVIVTGVEDQKTIEALKQFQKMFG 258 Query: 151 LDPSGMVDSSTL 162 L +G ++ + L Sbjct: 259 LPITGKINHAVL 270 >gi|255264719|ref|ZP_05344061.1| peptidoglycan-binding domain 1 [Thalassiobium sp. R2A62] gi|255107054|gb|EET49728.1| peptidoglycan-binding domain 1 [Thalassiobium sp. R2A62] Length = 559 Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 16/36 (44%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + FD A++ +Q GL +G ++ +T Sbjct: 511 EPGRVDGRFDGNTRRALRRYQQARGLPVTGYMNEAT 546 >gi|194219304|ref|XP_001498812.2| PREDICTED: similar to matrix metalloproteinase 25 preproprotein [Equus caballus] Length = 599 Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P A + A+K+ Q GL +G++D T+ AM P Sbjct: 73 LTRYGYLPPPNPAQAQLQSPAKLRDAIKVMQRFAGLRETGVLDPETMAAMRKP 125 >gi|192361979|ref|YP_001980771.1| peptidoglycan lytic transglycosylase [Cellvibrio japonicus Ueda107] gi|190688144|gb|ACE85822.1| peptidoglycan lytic transglycosylase, putative, plt103B [Cellvibrio japonicus Ueda107] Length = 434 Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V +L+E L G F A+ FQ + GL G + L + V Sbjct: 376 QVIQLQEALGQKGFYHEKA--DGIFGPATRRALSEFQHQQGLIADGFPSRTLLTMLGV 431 >gi|90424897|ref|YP_533267.1| hypothetical protein RPC_3408 [Rhodopseudomonas palustris BisB18] gi|90106911|gb|ABD88948.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 496 Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 8/42 (19%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 N +H P P + GCVR+ D L T Sbjct: 115 NGIALHGGPLPGY------AASHGCVRM--PYDFAEKLFDKT 148 >gi|157821123|ref|NP_001099778.1| matrix metalloproteinase-21 [Rattus norvegicus] gi|149061331|gb|EDM11754.1| matrix metalloproteinase 21 (predicted) [Rattus norvegicus] Length = 568 Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 45/143 (31%), Gaps = 34/143 (23%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L + ++L + + F + P+ + IA A Sbjct: 2 LAVSDLRLTMLLCWLVTPQPAQPERLFHSRDRSDLEP----SPLSRAKPIADLHAA---- 53 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q+ L + GW E+ S V G + AV+ F Sbjct: 54 QNFLLKYGWSEVSSPK-----ESAGVP--------VGF-------------TLAQAVRRF 87 Query: 146 QMRHGLDPSGMVDSSTLEAMNVP 168 Q + L SG +DS TL AMN P Sbjct: 88 QKANRLPASGKLDSPTLAAMNKP 110 >gi|195120101|ref|XP_002004567.1| GI19538 [Drosophila mojavensis] gi|193909635|gb|EDW08502.1| GI19538 [Drosophila mojavensis] Length = 588 Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D + SA++ FQ GL+ +G +D TL+ M++P Sbjct: 40 LSQFGYLPASARNPANSGLQDKHTWVSAIEEFQSFAGLNITGELDEETLKLMSLPRCGVR 99 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 100 DRVGTGDSRAKRYALQGSRWR 120 >gi|149756826|ref|XP_001493989.1| PREDICTED: matrix metallopeptidase 17 (membrane-inserted) [Equus caballus] Length = 579 Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 31 LSRFGYLPPADPTTGQLQTQEELSKAIAAMQRFGGLEATGILDEATLALMKTPRCSLPDL 90 Query: 176 LQVNLMRIKKLLEQK 190 V L R ++ Sbjct: 91 PAVILSRRRRQAPAP 105 >gi|115467320|ref|NP_001057259.1| Os06g0239100 [Oryza sativa Japonica Group] gi|51535159|dbj|BAD37871.1| putative metalloproteinase [Oryza sativa Japonica Group] gi|51535823|dbj|BAD37908.1| putative metalloproteinase [Oryza sativa Japonica Group] gi|113595299|dbj|BAF19173.1| Os06g0239100 [Oryza sativa Japonica Group] gi|125596648|gb|EAZ36428.1| hypothetical protein OsJ_20758 [Oryza sativa Japonica Group] Length = 371 Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+ + +L++ L G L + FDA +E A+K++Q GLD +G +D Sbjct: 56 GDERQGLGKLKDYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLD 115 Query: 159 SSTLEAMNVP 168 ++T+ M P Sbjct: 116 AATVSQMMAP 125 >gi|186685823|ref|YP_001869019.1| PT repeat-containing protein [Nostoc punctiforme PCC 73102] gi|186468275|gb|ACC84076.1| PT repeat-containing protein [Nostoc punctiforme PCC 73102] Length = 225 Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 7/85 (8%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSSTLEAMNVPVDL 171 + R L G + D + A++ FQ + L P G+ T Sbjct: 40 QFRSVLRGLGY-NVKVTNGPLTDEETKKAIREFQTGYKLKPVDGIAGPKT-----QDFAA 93 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYV 196 I Q+ + + + Sbjct: 94 NIVQILHTNLNAVVKPNPPLPRDHF 118 >gi|110677589|ref|YP_680596.1| transglycosylase, putative [Roseobacter denitrificans OCh 114] gi|109453705|gb|ABG29910.1| transglycosylase, putative [Roseobacter denitrificans OCh 114] Length = 451 Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + +++RL +G ++G+ A++ FQ GL G S+ L+ + Sbjct: 399 KEIQQRLTHAGF--NTQGVDGRIGPKTTDAIRAFQRNRGLVADGYASSALLQKLR 451 >gi|331674824|ref|ZP_08375581.1| general secretory pathway component, cryptic [Escherichia coli TA280] gi|331067733|gb|EGI39131.1| general secretory pathway component, cryptic [Escherichia coli TA280] Length = 489 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + ++ +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPFLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|221468756|ref|NP_523852.3| matrix metalloproteinase 1, isoform D [Drosophila melanogaster] gi|320544344|ref|NP_001189000.1| matrix metalloproteinase 1, isoform F [Drosophila melanogaster] gi|320544346|ref|NP_001189001.1| matrix metalloproteinase 1, isoform G [Drosophila melanogaster] gi|220902387|gb|AAM68327.2| matrix metalloproteinase 1, isoform D [Drosophila melanogaster] gi|318068686|gb|ADV37246.1| matrix metalloproteinase 1, isoform F [Drosophila melanogaster] gi|318068687|gb|ADV37247.1| matrix metalloproteinase 1, isoform G [Drosophila melanogaster] Length = 541 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 97 DRVGTGDSRSKRYALQGSRWR 117 >gi|239814037|ref|YP_002942947.1| lytic murein transglycosylase [Variovorax paradoxus S110] gi|239800614|gb|ACS17681.1| lytic murein transglycosylase [Variovorax paradoxus S110] Length = 438 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L+ L G + ++ +Q GL G + L+ + P Sbjct: 381 SQIAELQAALTRRGF--ATGAADGVMGPATREGLRRYQRSVGLPADGYPSAELLQRLQQP 438 >gi|241203749|ref|YP_002974845.1| peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857639|gb|ACS55306.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 317 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 13/152 (8%) Query: 25 SLVEKPIHASVLDEIINESY-----HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 S+ I +V+ + + + F + + + P ++ T Sbjct: 59 SVAGGAITFAVIFSFVAANALWYQPGLHPHPIFRTRDPQSPTVLGARRPAEEQQG-DVTT 117 Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 I +D + P G S V ++++L+ G Sbjct: 118 FRIERPRDTATTNATPAPAA----PGQQPSQLVMDIQQQLVRRGLYS--GIPDGIIGPRT 171 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 +A+ F+ G+ +G L A+ Sbjct: 172 SAAILFFEETVGMTQTGDPTPEVLVALKTDAA 203 Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V ++++ L + G+ +A++ FQ + L G + + L+ + Sbjct: 259 VLKIQKGLSNMAY--ANVGVDGVAGEQTRAAIRHFQKHYNLPEDGEPNQAVLKKLK 312 >gi|149579401|ref|XP_001519031.1| PREDICTED: similar to matrix metalloproteinase 28 [Ornithorhynchus anatinus] Length = 421 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 20/103 (19%) Query: 118 LIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------ 168 L G L +FD AV+ FQ L SG++D++TL M P Sbjct: 61 LGRYGYLRERVGEAPSPESFDD----AVREFQWTARLPVSGVLDAATLRQMKRPRCGVDD 116 Query: 169 -------VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 + L R++K Q G P Sbjct: 117 ADSREAWAERVTAPLAGRRARLRKRYVQPRGETPRAPADPGGE 159 >gi|56478199|ref|YP_159788.1| putative peptidoglycan-binding protein [Aromatoleum aromaticum EbN1] gi|56314242|emb|CAI08887.1| putative peptidoglycan-binding protein [Aromatoleum aromaticum EbN1] Length = 401 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 7/70 (10%) Query: 108 SVSVQRLRER-----LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + R+ R L G + A A +AV+ FQ GL+P G L Sbjct: 334 DPGLSRVERREVQTLLSQLGY--DAGEADGALGARSRAAVQQFQRGQGLEPDGRAGRQVL 391 Query: 163 EAMNVPVDLR 172 E + R Sbjct: 392 ELLRKAYAER 401 >gi|319426715|gb|ADV54789.1| lytic murein transglycosylase [Shewanella putrefaciens 200] Length = 442 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S V++L+E+L +G + ++ FQ Sbjct: 366 NGGEPLKVAPPEQPRLSREQVKQLQEKLNEAGF--EVGKPDGVLGRNSMAGIQAFQRSKK 423 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 424 MIADGFPSPEVFAALGLT 441 >gi|31543257|ref|NP_035976.3| matrix metalloproteinase-17 precursor [Mus musculus] gi|30354087|gb|AAH51917.1| Matrix metallopeptidase 17 [Mus musculus] gi|148687566|gb|EDL19513.1| matrix metallopeptidase 17 [Mus musculus] Length = 578 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 13/86 (15%) Query: 87 DILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAV 142 + + GG P L LG L G L P+ S + A+ Sbjct: 31 ALAAHGGCAAPAPRAEDLSLGVEW---------LSRFGYLPPADPASGQLQTQEELSKAI 81 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 Q GL+ +G++D +TL M P Sbjct: 82 TAMQQFGGLETTGILDEATLALMKTP 107 >gi|21624137|dbj|BAA82708.2| membrane-type-4 matrix metalloproteinase [Mus musculus] Length = 578 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 13/86 (15%) Query: 87 DILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAV 142 + + GG P L LG L G L P+ S + A+ Sbjct: 31 ALAAHGGCAAPAPRAEDLSLGVEW---------LSRFGYLPPADPASGQLQTQEELSKAI 81 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 Q GL+ +G++D +TL M P Sbjct: 82 TAMQQFGGLETTGILDEATLALMKTP 107 >gi|120598509|ref|YP_963083.1| lytic murein transglycosylase [Shewanella sp. W3-18-1] gi|120558602|gb|ABM24529.1| lytic murein transglycosylase [Shewanella sp. W3-18-1] Length = 439 Score = 40.4 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S V++L+E+L +G + ++ FQ Sbjct: 363 NGGEPLKVAPPEQPRLSREQVKQLQEKLNEAGF--EVGKPDGVLGRNSMAGIQAFQRSKK 420 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 421 MIADGFPSPEVFAALGLT 438 >gi|261756759|ref|ZP_06000468.1| conserved hypothetical protein [Brucella sp. F5/99] gi|261736743|gb|EEY24739.1| conserved hypothetical protein [Brucella sp. F5/99] Length = 202 Score = 40.4 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LI G L + A+ FQ G+ +G+ DS TL + +P Sbjct: 143 LIKLGYLT-DSDADGEYGPLTRFALTKFQQAKGIQQTGLPDSVTLVRLFIP 192 >gi|261318770|ref|ZP_05957967.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|265986568|ref|ZP_06099125.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|261297993|gb|EEY01490.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|264658765|gb|EEZ29026.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] Length = 202 Score = 40.4 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LI G L + A+ FQ G+ +G+ DS TL + +P Sbjct: 143 LIKLGYLT-DSDADGEYGPLTRFALTKFQQAKGIQQTGLPDSVTLVRLFIP 192 >gi|260574123|ref|ZP_05842128.1| lytic murein transglycosylase [Rhodobacter sp. SW2] gi|259023589|gb|EEW26880.1| lytic murein transglycosylase [Rhodobacter sp. SW2] Length = 417 Score = 40.4 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 7/65 (10%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 + WP R L + L+ L +G + + VK FQ +G Sbjct: 349 QAAWPR-EDRLLTP---DERL-ELQALLARAGFYA--DAVDGRIGPNTVAGVKAFQRANG 401 Query: 151 LDPSG 155 L P G Sbjct: 402 LVPDG 406 >gi|217977417|ref|YP_002361564.1| lytic murein transglycosylase [Methylocella silvestris BL2] gi|217502793|gb|ACK50202.1| lytic murein transglycosylase [Methylocella silvestris BL2] Length = 405 Score = 40.4 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 6/74 (8%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP G S + L+ L+ G D + A+ FQ + GL Sbjct: 336 PWPTND-----PGLSRADRRELQALLMRRGY-DLDGKADGVIGTKTKRAISDFQAKAGLA 389 Query: 153 PSGMVDSSTLEAMN 166 P G S L A Sbjct: 390 PDGRASVSVLAAAR 403 >gi|2829864|gb|AAC00572.1| similar to zinc metalloproteinases [Arabidopsis thaliana] Length = 377 Score = 40.4 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + L++ G + S + FD +++AV+++Q L+ +G++D T Sbjct: 48 GKKYDGLYMLKQYFQHFGYITETNLSGNFTDDFDDILKNAVEMYQRNFQLNVTGVLDELT 107 Query: 162 LEAMNVP 168 L+ + +P Sbjct: 108 LKHVVIP 114 >gi|146293412|ref|YP_001183836.1| lytic murein transglycosylase [Shewanella putrefaciens CN-32] gi|145565102|gb|ABP76037.1| lytic murein transglycosylase [Shewanella putrefaciens CN-32] Length = 439 Score = 40.4 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S V++L+E+L +G + ++ FQ Sbjct: 363 NGGEPLKVAPPEQPRLSREQVKQLQEKLNEAGF--EVGKPDGVLGRNSMAGIQAFQRSKK 420 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 421 MIADGFPSPEVFAALGLT 438 >gi|329114298|ref|ZP_08243060.1| Putative protein Y4bJ [Acetobacter pomorum DM001] gi|326696374|gb|EGE48053.1| Putative protein Y4bJ [Acetobacter pomorum DM001] Length = 643 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 16/93 (17%) Query: 63 IDSDIPIISKETIAQTEKAIA-FYQDILSRGGWPELPIRPL----HLGNSSVSVQRLRER 117 D IP ++A Y+ L L ++ L+++ Sbjct: 422 TDQSIPTNGAACYISAMDSLAEKYRR--------RLSGAALEEASRPIDTH---IALQKK 470 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 LI G L + A+ +Q G Sbjct: 471 LIDLGYLPAGSMADGVYGESTRIAIGTWQRVAG 503 >gi|310816562|ref|YP_003964526.1| ErfK/YbiS/YcfS/YnhG family [Ketogulonicigenium vulgare Y25] gi|308755297|gb|ADO43226.1| ErfK/YbiS/YcfS/YnhG family [Ketogulonicigenium vulgare Y25] Length = 273 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 29/169 (17%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y L+ L V + + ++ R + I+ YW++P + + Sbjct: 51 YGLIEDEGYRLPPVSPQYLQGVNRRVLMRYPGELRPGTIEIDPNAKFLYWIMPDGMAWR- 109 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP------------ 302 Y I + +G + + W P + R+DP Sbjct: 110 ----------YSIGVGIEGVGLRGTTIIQRKAKWPGWTPTANMLRRDPALYGPFRGGVPG 159 Query: 303 GKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G + + + + + Y +H T + N ++GC+R+ N Sbjct: 160 GLASPLGARALYLYRNGSDTYYRIHGTNDLESIGNSG---SAGCIRLFN 205 >gi|241764603|ref|ZP_04762619.1| Peptidoglycan-binding domain 1 protein [Acidovorax delafieldii 2AN] gi|241365966|gb|EER60592.1| Peptidoglycan-binding domain 1 protein [Acidovorax delafieldii 2AN] Length = 575 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 18/137 (13%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSS 108 D G+ ++ + + + I G W +P + L L + Sbjct: 226 QGLDLAGRIGSYGVKFNVGRDYAQGAGSAMRTLIDLGTIELVGKWARVPYWQCLTLDQTH 285 Query: 109 VSVQ-----------------RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 + Q ++ LI G L + + +A+ FQ GL Sbjct: 286 PNFQRQMRDWFDESGPQAQSSLVQSSLISRGYLPLGTEPLPSNSPQLRTALARFQADSGL 345 Query: 152 DPSGMVDSSTLEAMNVP 168 SG+VD T E Sbjct: 346 VASGVVDFPTYERALRN 362 >gi|297481953|ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos taurus] gi|296481308|gb|DAA23423.1| matrix metallopeptidase 24 (membrane-inserted) [Bos taurus] Length = 596 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L P S A ++SAV Q +G+ +G++D +T+E M P Sbjct: 31 RLANWLKSYGYLLPYDSRSSALHSGKALQSAVATMQQFYGIPVTGVLDQTTIEWMKKP 88 >gi|86356893|ref|YP_468785.1| putative peptidoglycan-binding protein (cell wall degradation activity) [Rhizobium etli CFN 42] gi|86280995|gb|ABC90058.1| putative peptidoglycan-binding protein (cell wall degradation activity) [Rhizobium etli CFN 42] Length = 296 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 I +D + P L S V ++++L+ G + + Sbjct: 98 RIERPEDGTATSAMPALAAPAQQP---SGLVMDIQQQLVRRGLY--NGTADGIIGPRTSA 152 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 A+ FQ G+ +G L A+ Sbjct: 153 AILFFQETVGMAQTGEATPEVLAALKTDAA 182 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V ++++ L + G+ +A++ FQ + L G + + L+ + Sbjct: 238 VLKIQKGLSNMAY--ANVGIDGVAGEQTRAAIRHFQKHYNLPEDGEPNEAVLKKLK 291 >gi|328780642|ref|XP_393358.4| PREDICTED: matrix metalloproteinase-14-like [Apis mellifera] Length = 575 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P S + + A+ FQ GL+ +G +D T + M +P Sbjct: 47 LSQFGYLQPMNPTSGGIISEETLSKAISEFQAFAGLNITGDIDEETYKLMTLP 99 >gi|125554704|gb|EAZ00310.1| hypothetical protein OsI_22327 [Oryza sativa Indica Group] Length = 371 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+ + +L++ L G L + FDA +E A+K++Q GLD +G +D Sbjct: 56 GDERQGLGKLKDYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLD 115 Query: 159 SSTLEAMNVP 168 ++T+ M P Sbjct: 116 AATVSQMMAP 125 >gi|21542428|sp|Q9R0S3|MMP17_MOUSE RecName: Full=Matrix metalloproteinase-17; Short=MMP-17; AltName: Full=Membrane-type matrix metalloproteinase 4; Short=MT-MMP 4; Short=MTMMP4; AltName: Full=Membrane-type-4 matrix metalloproteinase; Short=MT4-MMP; Short=MT4MMP; Flags: Precursor gi|8052272|emb|CAB92315.1| membrane-type-4 matrix metalloproteinase [Mus musculus] Length = 578 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 13/86 (15%) Query: 87 DILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAV 142 + + GG P L LG L G L P+ S + A+ Sbjct: 31 ALAAHGGCAAPAPRGEDLSLGVEW---------LSRFGYLPPADPASGQLQTQEELSKAI 81 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 Q GL+ +G++D +TL M P Sbjct: 82 TAMQQFGGLETTGILDEATLALMKTP 107 >gi|23097985|ref|NP_691451.1| carboxypeptidase [Oceanobacillus iheyensis HTE831] gi|22776209|dbj|BAC12486.1| carboxypeptidase [Oceanobacillus iheyensis HTE831] Length = 339 Score = 40.4 bits (93), Expect = 0.55, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 19/225 (8%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 +D+ + ELP PL + V L+ L G + ++ V A+ F Sbjct: 41 EDVTANQNNKELPETPLQKLDQGEEVDALQYFLEQLGY---NFSEQGNYNEQVTWAITDF 97 Query: 146 Q-MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR----YVLVNI 200 Q + L SG+ + T + + + Q + + + L +++ Sbjct: 98 QLQQEDLLVSGVYNEDTKQKI-----EEVIQSENSYKPGEGLPAPTEPAFTDAGTEIISN 152 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM-MALL 259 P L V D P + + Y + +++ L Sbjct: 153 PYDQLALVNK---EFSLPADYIPDDLVIPNVPFPFTEDIPKKYMRQAAADALEELFADAL 209 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 ++ + + D + + F R PG+ Sbjct: 210 EENLELYAQSGYRSYDRQDNIFAANAAENGEKHANTFSAR--PGE 252 >gi|307153983|ref|YP_003889367.1| OpcA protein [Cyanothece sp. PCC 7822] gi|306984211|gb|ADN16092.1| OpcA protein [Cyanothece sp. PCC 7822] Length = 456 Score = 40.4 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 ++ L G + A+K Q +GL+ +G + L + I Sbjct: 60 QQLLTALGYYS--GPIDGIAGPRTVLAIKAAQKAYGLEITGKSNQQLLTKLQETYAQAIA 117 Query: 175 QLQVNLMRIK 184 + ++ K Sbjct: 118 EGRLTNAEEK 127 >gi|218289713|ref|ZP_03493921.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] gi|218240170|gb|EED07354.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] Length = 209 Score = 40.4 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L++ L G + ++ + +AV+ FQ GL P+G VD Sbjct: 86 VLQQGDKGSKVVALQQALSALGFF--NYAITGTYGPITAAAVEAFQAAEGLTPTGAVDER 143 Query: 161 TLEAMNVPVDLRIR 174 TL A+ + Sbjct: 144 TLTALQQAMKAHAT 157 >gi|163856176|ref|YP_001630474.1| putative peptidoglycan-binding protein [Bordetella petrii DSM 12804] gi|163259904|emb|CAP42205.1| putative peptidoglycan-binding protein [Bordetella petrii] Length = 421 Score = 40.4 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 2/79 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + L+ LI G A +A++ Q GL G +L Sbjct: 345 PGLSRAERRELQSLLIARGY--DIGEPDGLIGARTRTALQAVQREAGLVADGRAGQKSLL 402 Query: 164 AMNVPVDLRIRQLQVNLMR 182 + + R Sbjct: 403 WLRQNAADPPAGVNAPPAR 421 >gi|152206059|gb|ABS30415.1| light organ matrix metalloproteinase 1 [Euprymna scolopes] Length = 265 Score = 40.4 bits (93), Expect = 0.56, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L G ++ SV + A+KLFQ GL+ +G V+ E M P + Sbjct: 45 LRKYGYMNDVNERSVDYAERRTDAIKLFQEFAGLEVTGEVNEEVRELMLKPRCGMKDIVV 104 Query: 178 VNLMRIKK 185 + Sbjct: 105 GRPENARW 112 >gi|320544342|ref|NP_001188999.1| matrix metalloproteinase 1, isoform E [Drosophila melanogaster] gi|318068685|gb|ADV37245.1| matrix metalloproteinase 1, isoform E [Drosophila melanogaster] Length = 542 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 97 DRVGTGDSRSKRYALQGSRWR 117 >gi|157423149|gb|AAI53751.1| LOC100127631 protein [Xenopus (Silurana) tropicalis] Length = 483 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 115 RERLIISGDL--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L G L V+ A+++FQ+ L +G++D T++ M P Sbjct: 39 KRYLQQFGYLQKPLESDTEDFSSEEVQEALRIFQLSTHLPGTGVLDEDTIDKMRQP 94 >gi|172039052|ref|YP_001805553.1| hypothetical protein cce_4139 [Cyanothece sp. ATCC 51142] gi|171700506|gb|ACB53487.1| hypothetical protein cce_4139 [Cyanothece sp. ATCC 51142] Length = 109 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 19/84 (22%) Query: 102 LHLGNSSVSVQRLRERLIIS----------GDLDPSKGLSVAFDAYVESAVKLFQMRHG- 150 L G+S SV+ L + L + + +D + VK FQ + Sbjct: 15 LKNGDSGSSVRFLEQLLSSIYWFSQRPNWPTLITENVIFDAKYDDQCQKIVKEFQQNYNA 74 Query: 151 --------LDPSGMVDSSTLEAMN 166 + G+V T +A+ Sbjct: 75 NFPAPAPHITVDGIVGPETWQALG 98 >gi|115351502|ref|YP_773341.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Burkholderia ambifaria AMMD] gi|115281490|gb|ABI87007.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Burkholderia ambifaria AMMD] Length = 300 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 14/88 (15%) Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFD 135 +A+A G WP+ LG+ V+ L+ +L G D Sbjct: 195 QALAQ----AGVGAWPDDATVAARLGDRDPHALVDVRELQLKLARYGY---DVPTDGVLD 247 Query: 136 AYVESAVKLFQMRHGLDPS--GMVDSST 161 A FQ H G D+ T Sbjct: 248 ARTRRVFAAFQ-MHFRPSDYAGNPDAET 274 >gi|33597706|ref|NP_885349.1| putative peptidoglycan-binding protein [Bordetella parapertussis 12822] gi|33602554|ref|NP_890114.1| putative peptidoglycan-binding protein [Bordetella bronchiseptica RB50] gi|33574134|emb|CAE38463.1| putative peptidoglycan-binding protein [Bordetella parapertussis] gi|33576993|emb|CAE34073.1| putative peptidoglycan-binding protein [Bordetella bronchiseptica RB50] Length = 409 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + L+E L+ G A A++ Q + GL G TL+ Sbjct: 347 PGLSRAERRELQELLLARGF--DIGKPDGVIGARTRQALQTVQGQLGLPADGRAGQKTLK 404 Query: 164 AMNVP 168 A+ P Sbjct: 405 ALRTP 409 >gi|326931703|ref|XP_003211965.1| PREDICTED: matrix metalloproteinase-24-like [Meleagris gallopavo] Length = 557 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 110 SVQRLRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L L G L PS + V+SAV Q +G+ +G++D +TLE M Sbjct: 14 DVVELEGWLKTYGYLLPSDSQMSAAQSGKAVQSAVATMQRFYGIPVTGVLDQTTLEWMKK 73 Query: 168 P 168 P Sbjct: 74 P 74 >gi|89067326|ref|ZP_01154839.1| hypothetical protein OG2516_10816 [Oceanicola granulosus HTCC2516] gi|89046895|gb|EAR52949.1| hypothetical protein OG2516_10816 [Oceanicola granulosus HTCC2516] Length = 389 Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G S + L+E+L+ G + +AV+ Q+R G+ Sbjct: 319 GAPVYDAGNPRPGLSGEQMVELQEKLVARGH--DVGDVDGILGEKTRAAVQAEQIRLGMP 376 Query: 153 PSGMVDSSTLEAM 165 P + L + Sbjct: 377 PDAWPTAELLARL 389 >gi|298247674|ref|ZP_06971479.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297550333|gb|EFH84199.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 231 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G++ V+ L++ L D + + F + AVK +Q + + G V T Sbjct: 165 GSTGSWVRTLQQELNARNMRDQNGHALAVDGDFGVNTQYAVKEWQTKEHIQVDGQVGPIT 224 Query: 162 L 162 Sbjct: 225 W 225 >gi|255524547|ref|ZP_05391501.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296185805|ref|ZP_06854212.1| hypothetical protein CLCAR_1244 [Clostridium carboxidivorans P7] gi|255511700|gb|EET87986.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296049633|gb|EFG89060.1| hypothetical protein CLCAR_1244 [Clostridium carboxidivorans P7] Length = 466 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 11/108 (10%) Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA-----STKI 313 + + + N + + ++Q+ ++ + S + Sbjct: 349 ITRQHLWFYKNGRLISEGDIVTGDPNRGCSTVLGTYMLNYKQNGATLSGLNYETEVSYWM 408 Query: 314 EFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRVRNIIDLDVWLLKD 359 F+ N +HD F R T GCV V +DL + + Sbjct: 409 PFFG--NIGIHDATWRYSFGGDIYKRNGTHGCVNV--PLDLAKAIFDN 452 >gi|73950335|ref|XP_544383.2| PREDICTED: similar to matrix metalloproteinase 14 (membrane-inserted) [Canis familiaris] Length = 741 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Query: 105 GNSSV--SVQRLRERLIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSS 160 G S +V + L + G L + + SA+ Q +G+ +G++D Sbjct: 106 GGSGPNRAVVAVNW-LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEE 164 Query: 161 TLEAMNVP----VDLRIRQLQVNLMRIK 184 T M P D +++ NL R + Sbjct: 165 TKAWMKRPRCGVPDQFGVRVKANLRRRR 192 >gi|71065257|ref|YP_263984.1| membrane-bound lytic murein transglycosylase [Psychrobacter arcticus 273-4] gi|71038242|gb|AAZ18550.1| possible membrane-bound lytic murein transglycosylase [Psychrobacter arcticus 273-4] Length = 434 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 ++ KA+ + WP RPL S+ V+ L++RL SG +KG Sbjct: 350 VSLLGKALVGQDGLQKS--WPRY-ERPL----STSQVRNLQQRLTSSGY--DTKGADGIV 400 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSS 160 A + +Q +G P G + Sbjct: 401 GTNTRKAFQRWQADNGQTPDGFITQG 426 >gi|322435596|ref|YP_004217808.1| YD repeat protein [Acidobacterium sp. MP5ACTX9] gi|321163323|gb|ADW69028.1| YD repeat protein [Acidobacterium sp. MP5ACTX9] Length = 2294 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 8/69 (11%) Query: 292 EPPNFIFRQDPGKINAMASTKIEFY--SRNNTYMHDT------PEPILFNNVVRFETSGC 343 N + + NA ++ ++H T P + + GC Sbjct: 2206 NSANTPWSKTALGGNAFGPYQLHIKELDGRGIFIHGTMGPGWSPTTWGNALFLSPTSHGC 2265 Query: 344 VRVRNIIDL 352 +R+ N D+ Sbjct: 2266 IRMCNRDDI 2274 >gi|156384222|ref|XP_001633230.1| predicted protein [Nematostella vectensis] gi|156220297|gb|EDO41167.1| predicted protein [Nematostella vectensis] Length = 515 Score = 40.4 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 2/92 (2%) Query: 118 LIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G LD + + A++ FQ GL +G++D++T M P Sbjct: 27 LTRYGYLDAPNRKTGAIRSRQDLSRAIRQFQRYTGLQETGIMDAATKSKMEQPRCGLPDI 86 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 + + +K G R+ I Sbjct: 87 VGTSENARRKRRYALQGSRWEKSEITYRFASY 118 >gi|294678909|ref|YP_003579524.1| lytic murein transglycosylase [Rhodobacter capsulatus SB 1003] gi|294477729|gb|ADE87117.1| lytic murein transglycosylase [Rhodobacter capsulatus SB 1003] Length = 388 Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P + R G + ++ L+ RL G + AV++ Q R GL Sbjct: 318 GAPRVDPRAAEPGLAPAQMKALQARLQARGH--DVGPIDGILGEKTREAVQIEQGRLGLP 375 Query: 153 PSGMVDSSTLEAM 165 + L+ + Sbjct: 376 ADAWPTPALLDRL 388 >gi|86749108|ref|YP_485604.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris HaA2] gi|86572136|gb|ABD06693.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris HaA2] Length = 288 Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 10/85 (11%) Query: 86 QDILSRG--GW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + + S G W P L G VQ L+ L G ++ FD Sbjct: 187 RALASSGVGHWVEPAPIDAGAVLRHGAEGEPVQVLQRALADYGY---GIAINGKFDHATF 243 Query: 140 SAVKLFQMRHG-LDPSGMVDSSTLE 163 V FQ G+ D STL Sbjct: 244 EVVTAFQRHFRPEKVDGIADGSTLA 268 >gi|320544352|ref|NP_001189004.1| matrix metalloproteinase 1, isoform J [Drosophila melanogaster] gi|318068690|gb|ADV37250.1| matrix metalloproteinase 1, isoform J [Drosophila melanogaster] Length = 512 Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 97 DRVGTGDSRSKRYALQGSRWR 117 >gi|224371348|ref|YP_002605512.1| hypothetical protein HRM2_42920 [Desulfobacterium autotrophicum HRM2] gi|223694065|gb|ACN17348.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 394 Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + R++ L+ +G + +AV FQ L + + TL+A+ V Sbjct: 338 ITRIQNALVKAGY--DPGPVDGVIGTQTMAAVNKFQADAKLAITKYLTIETLQALKVKP 394 >gi|197117605|ref|YP_002138032.1| peptidoglycan-binding ATPase [Geobacter bemidjiensis Bem] gi|197086965|gb|ACH38236.1| peptidoglycan-binding ATPase, putative [Geobacter bemidjiensis Bem] Length = 536 Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V+ L+ L G D ++ ++AV FQ R L G + TL Sbjct: 460 AGVKLLQGLLKQVGCYD--GAVNGELSDKTQAAVAEFQRREQLTADGKLGGQTL 511 >gi|15718389|dbj|BAB68366.1| gelatinase [Paralichthys olivaceus] Length = 673 Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 11/131 (8%) Query: 88 ILSRGGWPELPIRPLH---LGNSSVSVQR--LRE-RLIISGDLDPSKGLSVAFDAYVESA 141 ++ + GW LP+R + G+ +V L E L G LD A Sbjct: 13 VIVQDGW-SLPLRSISVTFPGDILKNVTDTDLAETYLKRFGYLDKMHRSGFQSMVSTAKA 71 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVP--VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +K+ Q + GL +G +D STLEAM P + Q +K + L Sbjct: 72 LKMMQRQMGLKETGKLDKSTLEAMKQPRCGVPDVANYQTFEGDLKW--DHNDVTYRTLNY 129 Query: 200 IPAASLEAVEN 210 P +++ Sbjct: 130 SPDMESSLIDD 140 >gi|321462023|gb|EFX73050.1| hypothetical protein DAPPUDRAFT_325672 [Daphnia pulex] Length = 533 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Query: 118 LIISGDLDPSKGLSV---AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP---VDL 171 L G L+P S V +A+ FQ GLDP+G+V+ TL M P + Sbjct: 31 LASFGYLEPRLKNSSTASVSANTVRNAISDFQSYAGLDPTGIVNEETLTWMRKPRCGLPD 90 Query: 172 RIRQLQVNLMRIKKL 186 RI + R + + Sbjct: 91 RIIPEGSSTRRKRSI 105 >gi|304391498|ref|ZP_07373440.1| ErfK/YbiS/YcfS/YnhG [Ahrensia sp. R2A130] gi|303295727|gb|EFL90085.1| ErfK/YbiS/YcfS/YnhG [Ahrensia sp. R2A130] Length = 196 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%) Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLK 358 + +H T + R + GCVR+ N L + + Sbjct: 145 MFYHRGFAIHGTNS---IKRLGRVASHGCVRLHPSNAATLFSLVRR 187 >gi|306844345|ref|ZP_07476937.1| lytic murein transglycosylase [Brucella sp. BO1] gi|306275417|gb|EFM57158.1| lytic murein transglycosylase [Brucella sp. BO1] Length = 410 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 340 GAPAFDPGTPVPGLTQDQLKELQAKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 397 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 398 ADSWPTQELLDRL 410 >gi|326677672|ref|XP_698601.5| PREDICTED: matrix metalloproteinase-17 [Danio rerio] Length = 588 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L PS ++ + A+K Q GL+ +G++D +TL M P Sbjct: 41 LSKFGYLPPSDPVNGQLQTKEALTKAIKAMQRFGGLEETGVLDQATLGLMKTP 93 >gi|260836059|ref|XP_002613024.1| hypothetical protein BRAFLDRAFT_266228 [Branchiostoma floridae] gi|229298407|gb|EEN69033.1| hypothetical protein BRAFLDRAFT_266228 [Branchiostoma floridae] Length = 494 Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Query: 118 LIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G LD S D V AV LFQ L +G +D T++ M++P Sbjct: 28 LTKYGYLDDGMMSKASDMTPTEMDDMVRDAVMLFQEMAHLPMTGRLDEMTMQQMSMP 84 >gi|315925294|ref|ZP_07921506.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621415|gb|EFV01384.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 663 Score = 40.4 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 54/228 (23%), Gaps = 87/228 (38%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A ++ + + + + + V+ P +L+A NG+ L + VI G Sbjct: 514 RAPGSTARPYVKMVPKSPKAFGWMP---VSPTCICVDRPHQTLKAYVNGREILSTPVITG 570 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R TP + +I +Q P L Sbjct: 571 RPGMSTPAGNYKI----------------------RAKQSPSVLIGPGYRSYVR------ 602 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP---------EPILFN 333 + F RN+ +HD L Sbjct: 603 ----------------------------YWMPF-IRNSIGIHDASWQDAKGYGGNAYLIG 633 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 + GCV +TP W+ + V+ Sbjct: 634 RG----SHGCV--------------NTPLWAVKKVYRTFPVGTPVYVR 663 >gi|215778396|ref|YP_002261536.1| putative cell wall degradation protein [Aliivibrio salmonicida LFI1238] gi|208011441|emb|CAQ81905.1| putative cell wall degradation protein [Aliivibrio salmonicida LFI1238] Length = 739 Score = 40.4 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 99 IRPLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR----HG 150 + G+ ++ ++E L+ G F + E AV FQ H Sbjct: 464 KGAIKKGDKDAPKSNEIKTIQEALLTLNFDLGKYGADGDFGSGTEQAVIDFQREFVPTHE 523 Query: 151 L-------DPSGMVDSSTLEAMNVPVDLRIR 174 + G+V + TL A++ V ++ + Sbjct: 524 VHPEYEMKKSDGVVGNQTLLALDEAVTIKWK 554 >gi|154509325|ref|ZP_02044967.1| hypothetical protein ACTODO_01850 [Actinomyces odontolyticus ATCC 17982] gi|153798959|gb|EDN81379.1| hypothetical protein ACTODO_01850 [Actinomyces odontolyticus ATCC 17982] Length = 344 Score = 40.4 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 100 RPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R G S V++L L G + FD +A+K +Q L SG + Sbjct: 98 RAFEEGMSDGEDVRQLETALSELGYF--EATPNAHFDWNTIAAIKKWQKALTLPQSGSLP 155 Query: 159 SSTL 162 T+ Sbjct: 156 LGTV 159 >gi|306843207|ref|ZP_07475819.1| lytic murein transglycosylase [Brucella sp. BO2] gi|306286597|gb|EFM58172.1| lytic murein transglycosylase [Brucella sp. BO2] Length = 410 Score = 40.4 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 340 GAPAFDPGTPVPGLTQDQLKELQAKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 397 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 398 ADSWPTQELLDRL 410 >gi|239941796|ref|ZP_04693733.1| hypothetical protein SrosN15_12419 [Streptomyces roseosporus NRRL 15998] gi|239988256|ref|ZP_04708920.1| hypothetical protein SrosN1_13196 [Streptomyces roseosporus NRRL 11379] Length = 771 Score = 40.4 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 49/160 (30%), Gaps = 21/160 (13%) Query: 69 IISKETIAQTEKAIAFYQDILSR------GGWPELPIRPLHLGNSSVSVQRLRER----- 117 I S++ A+ + I + G L L G+S V Sbjct: 165 IYSRDVQKSLLTALQYELGISAPNGNFGPGTQAALRNVTLKEGDSGTLVSLFTAACVFNE 224 Query: 118 -LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 L I + FDA VKLFQ + SG D +T + V + R++ Sbjct: 225 PLPIGALEARRTTFTPTFDAKTTGYVKLFQEFSYIPESGKGDYTTWAQLLVSMGDPDRKV 284 Query: 177 QVNLM-------RIKKLLEQKMG--LRYVLVNIPAASLEA 207 + R K L + RY+ P E Sbjct: 285 TASDTRFVIDAPRAKWLYDNDYRIVGRYLYNPDPNYEKEI 324 >gi|254719477|ref|ZP_05181288.1| Putative peptidoglycan binding domain 1 [Brucella sp. 83/13] gi|306839256|ref|ZP_07472073.1| lytic murein transglycosylase [Brucella sp. NF 2653] gi|306405803|gb|EFM62065.1| lytic murein transglycosylase [Brucella sp. NF 2653] Length = 410 Score = 40.4 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 340 GAPAFDPGTPVPGLTQDQLKELQAKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 397 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 398 ADSWPTQELLDRL 410 >gi|254711180|ref|ZP_05172991.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis B2/94] gi|256029561|ref|ZP_05443175.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 220 Score = 40.4 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LI G L + A+ FQ G+ +G+ DS TL + +P Sbjct: 161 LIKLGYLT-DSDADGEYGPLTRFALTKFQQAKGIQQTGLPDSVTLVRLFIP 210 >gi|225629039|ref|ZP_03787073.1| Conserved hypothetical protein [Brucella ceti str. Cudo] gi|260167350|ref|ZP_05754161.1| peptidoglycan binding domain-containing protein [Brucella sp. F5/99] gi|225616885|gb|EEH13933.1| Conserved hypothetical protein [Brucella ceti str. Cudo] Length = 220 Score = 40.4 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LI G L + A+ FQ G+ +G+ DS TL + +P Sbjct: 161 LIKLGYLT-DSDADGEYGPLTRFALTKFQQAKGIQQTGLPDSVTLVRLFIP 210 >gi|146276937|ref|YP_001167096.1| hypothetical protein Rsph17025_0888 [Rhodobacter sphaeroides ATCC 17025] gi|145555178|gb|ABP69791.1| hypothetical protein Rsph17025_0888 [Rhodobacter sphaeroides ATCC 17025] Length = 152 Score = 40.4 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 90 SRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 G W ++P L V L+ L + G +S D +A++ FQ Sbjct: 50 DEGRWFQVPCPDALTP----ERVATLQRALEVRGL--HRGAISGEMDRETRAAIRRFQEP 103 Query: 149 HGLDPS 154 GLD Sbjct: 104 LGLDSD 109 >gi|291445243|ref|ZP_06584633.1| ykuG [Streptomyces roseosporus NRRL 15998] gi|291348190|gb|EFE75094.1| ykuG [Streptomyces roseosporus NRRL 15998] Length = 783 Score = 40.4 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 49/160 (30%), Gaps = 21/160 (13%) Query: 69 IISKETIAQTEKAIAFYQDILSR------GGWPELPIRPLHLGNSSVSVQRLRER----- 117 I S++ A+ + I + G L L G+S V Sbjct: 177 IYSRDVQKSLLTALQYELGISAPNGNFGPGTQAALRNVTLKEGDSGTLVSLFTAACVFNE 236 Query: 118 -LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 L I + FDA VKLFQ + SG D +T + V + R++ Sbjct: 237 PLPIGALEARRTTFTPTFDAKTTGYVKLFQEFSYIPESGKGDYTTWAQLLVSMGDPDRKV 296 Query: 177 QVNLM-------RIKKLLEQKMG--LRYVLVNIPAASLEA 207 + R K L + RY+ P E Sbjct: 297 TASDTRFVIDAPRAKWLYDNDYRIVGRYLYNPDPNYEKEI 336 >gi|162456479|ref|YP_001618846.1| putative Rhs element Vgr protein [Sorangium cellulosum 'So ce 56'] gi|161167061|emb|CAN98366.1| Putative Rhs element Vgr protein [Sorangium cellulosum 'So ce 56'] Length = 880 Score = 40.4 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LR RL G + + D +A+ FQ H L SG +D+ T Sbjct: 823 ALR-RLKNLGYYEGAIKEDPPADKGFRAALAWFQKDHELGESGELDAQT 870 >gi|256831334|ref|YP_003160061.1| hypothetical protein Jden_0082 [Jonesia denitrificans DSM 20603] gi|256684865|gb|ACV07758.1| hypothetical protein Jden_0082 [Jonesia denitrificans DSM 20603] Length = 391 Score = 40.4 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 12/166 (7%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 +++ G P R LH G+S V++L L G + D+ +A+ Q Sbjct: 113 VIAAGNTPA--YRDLHPGDSGPDVKQLAALLNTLGY--SVEPTQQTIDSQFTAAIH--QW 166 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY---VLVNIPAAS 204 L G+ S T+ A +V + + G + PA Sbjct: 167 HKDL---GVPRSETVTAGDVLYVPTLPTRVAYAPDAPSIGAVLTGQDPLILTVAAEPAFH 223 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++ + + V + I I N ++ Sbjct: 224 IDLTTAQAQRITTGNTVTITPPTGDPWIAEITTIEPNTDGGHTATL 269 >gi|256376604|ref|YP_003100264.1| peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] gi|255920907|gb|ACU36418.1| Peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] Length = 396 Score = 40.4 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 11/83 (13%) Query: 91 RGGWPELPIRPL--------HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 RGG PE+ R L +G V+ L++ L+ + + +F + Sbjct: 211 RGGTPEVDDRLLFSPACDAVVMGQHDSCVRELQQLLVRA---RARMSVDGSFGPETLRRL 267 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 FQ+ GL+P G+VD+ T EA+ Sbjct: 268 TAFQVLAGLEPRGVVDAGTREAL 290 >gi|153207658|ref|ZP_01946322.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii 'MSU Goat Q177'] gi|154706813|ref|YP_001424546.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii Dugway 5J108-111] gi|161830871|ref|YP_001596648.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii RSA 331] gi|212218524|ref|YP_002305311.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii CbuK_Q154] gi|120576477|gb|EAX33101.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii 'MSU Goat Q177'] gi|154356099|gb|ABS77561.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii Dugway 5J108-111] gi|161762738|gb|ABX78380.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii RSA 331] gi|212012786|gb|ACJ20166.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii CbuK_Q154] Length = 160 Score = 40.4 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 33/172 (19%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-------RQTPILHSRINRIMFNPYWVI 246 Y+ V+IP+ +L + +V R V R +TP I + Sbjct: 3 TYLTVDIPSQTLTLFRDNQVIKRYRVSTARNGPGELINSEKTPRGWHIIRAKV---GEGC 59 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + + + LK ++ + + W S N Sbjct: 60 PPNTVFVERRPTGEVYSPALKRR------YPDRDWVLTRILWLSGLEVG---------KN 104 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + + R Y+H + + I+ + GC+R+ N II+L + Sbjct: 105 RLGNVDTM---RRYVYIHGSGDEIIMGKPG---SRGCIRMHNHDIIELFDEV 150 >gi|83717816|ref|YP_439539.1| hypothetical protein BTH_II1343 [Burkholderia thailandensis E264] gi|83651641|gb|ABC35705.1| gp28 [Burkholderia thailandensis E264] Length = 250 Score = 40.4 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 3/64 (4%) Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 + +G +S +D E AV+ Q L G+ T + Sbjct: 1 MRAGY---PVDVSHLYDEQTERAVQTLQAAASLVVDGIAGPKTYRVLASGQRDPKHLTDA 57 Query: 179 NLMR 182 +L R Sbjct: 58 DLAR 61 >gi|169350988|ref|ZP_02867926.1| hypothetical protein CLOSPI_01765 [Clostridium spiroforme DSM 1552] gi|169292050|gb|EDS74183.1| hypothetical protein CLOSPI_01765 [Clostridium spiroforme DSM 1552] Length = 730 Score = 40.4 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 7/122 (5%) Query: 49 NDRFDNFLARVDMGIDSDIP-IISKETIAQTEKAIAFYQDILSR-GGWPELPIRP---LH 103 + I +TI +A+ + I S + ++ Sbjct: 9 QQWLNLTYGDDSRFNRVTEDGITGWDTIYGLRRALQIEEGITSTSNSFGPSTYDKCPDIN 68 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V ++ L G G + + +AVK F+ G+ +G ++ + Sbjct: 69 EGDTGNLVYIVQGGLWCKGF--NPGGFDGNYGSRTSAAVKRFKEATGIGGNGNMNKDFMR 126 Query: 164 AM 165 A+ Sbjct: 127 AL 128 >gi|163752325|ref|ZP_02159522.1| membrane-bound lytic transglycolase-related protein [Shewanella benthica KT99] gi|161327772|gb|EDP98957.1| membrane-bound lytic transglycolase-related protein [Shewanella benthica KT99] Length = 377 Score = 40.4 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ L+ +L G ++ ++ +Q GL G D +T +A+ + Sbjct: 320 ARVKALQAKLNDKGF--DVGKPDGVMGKNSKTGLRAYQQSVGLLADGFPDEATFKAIEIN 377 >gi|320544350|ref|NP_001189003.1| matrix metalloproteinase 1, isoform I [Drosophila melanogaster] gi|320544354|ref|NP_001189005.1| matrix metalloproteinase 1, isoform K [Drosophila melanogaster] gi|318068689|gb|ADV37249.1| matrix metalloproteinase 1, isoform I [Drosophila melanogaster] gi|318068691|gb|ADV37251.1| matrix metalloproteinase 1, isoform K [Drosophila melanogaster] Length = 528 Score = 40.4 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +D+ T++ M++P Sbjct: 37 LSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 97 DRVGTGDSRSKRYALQGSRWR 117 >gi|170748425|ref|YP_001754685.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium radiotolerans JCM 2831] gi|170654947|gb|ACB24002.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium radiotolerans JCM 2831] Length = 251 Score = 40.4 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 20/133 (15%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI------ 99 + + +A + I PI + +A ++ A +D W L Sbjct: 110 PYPEAQVEAVIA-LARDILGRWPIPPERVLAHSDVAPERKEDPGEIFPWDRLAAAGVGHH 168 Query: 100 ---------RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 R L G++ V+ L+ + G ++ FDA + V FQ Sbjct: 169 VPPARLQDGRFLARGDAGQPVEALQAMFALYGY---DLPVTGTFDARTRAVVTAFQRHFR 225 Query: 151 -LDPSGMVDSSTL 162 G+ D+ST+ Sbjct: 226 PARVDGVADASTI 238 >gi|315298621|gb|EFU57876.1| conserved hypothetical protein [Escherichia coli MS 16-3] Length = 489 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|331659613|ref|ZP_08360551.1| putative general secretion pathway protein A [Escherichia coli TA206] gi|324009014|gb|EGB78233.1| hypothetical protein HMPREF9532_01265 [Escherichia coli MS 57-2] gi|331052828|gb|EGI24861.1| putative general secretion pathway protein A [Escherichia coli TA206] Length = 489 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|331649120|ref|ZP_08350206.1| putative general secretion pathway protein A [Escherichia coli M605] gi|330909365|gb|EGH37879.1| general secretion pathway protein A [Escherichia coli AA86] gi|331041618|gb|EGI13762.1| putative general secretion pathway protein A [Escherichia coli M605] Length = 489 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|306816334|ref|ZP_07450472.1| general secretion pathway protein A [Escherichia coli NC101] gi|305850730|gb|EFM51187.1| general secretion pathway protein A [Escherichia coli NC101] Length = 489 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|281180358|dbj|BAI56688.1| general secretion pathway protein A [Escherichia coli SE15] Length = 489 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|258512822|ref|YP_003186256.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479548|gb|ACV59867.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 339 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 16/103 (15%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMG 192 E AV F+ +H L G+ + A++ R Q+ + + + L + Sbjct: 169 TPITEGAVMAFESQHHLAVDGIAGPDVIHALSEALAAGERAPQVPYSYILVTTSLPE--- 225 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 +LE NGK+ L S G TP + Sbjct: 226 -----------TLELWVNGKLVLTSLCNTGIPQAPTPYGTYGV 257 >gi|218673768|ref|ZP_03523437.1| putative hemaglutinin protein [Rhizobium etli GR56] Length = 182 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 +++ ++ L +G + A +A+K FQ G P G V +T+ A+ Sbjct: 118 AIRNIQAILNNNGF--DAGVPDGEMGAKTVAAIKNFQKSIGQQPDGKVTDATVRALLERN 175 Query: 170 DLRIRQL 176 + + Sbjct: 176 KQVAKAI 182 >gi|126335321|ref|XP_001371136.1| PREDICTED: similar to Purinergic receptor P2Y, G-protein coupled, 5 [Monodelphis domestica] Length = 569 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDP 153 +P R L S+ V + L G L P + A+K+ Q GL Sbjct: 22 PVPARALEP--SAQDVSLSVDWLTRYGYLPPPHPAQAQLQSPEQLRDAIKIMQRFAGLKE 79 Query: 154 SGMVDSSTLEAMNVP 168 +G++D +TL M P Sbjct: 80 TGLMDEATLSTMKKP 94 >gi|110643562|ref|YP_671292.1| general secretion pathway protein A [Escherichia coli 536] gi|191171523|ref|ZP_03033071.1| putative general secretory pathway protein A [Escherichia coli F11] gi|300974002|ref|ZP_07172409.1| hypothetical protein HMPREF9553_00369 [Escherichia coli MS 200-1] gi|110345154|gb|ABG71391.1| probable general secretion pathway protein A [Escherichia coli 536] gi|190908150|gb|EDV67741.1| putative general secretory pathway protein A [Escherichia coli F11] gi|222035032|emb|CAP77775.1| general secretion pathway protein A [Escherichia coli LF82] gi|300309012|gb|EFJ63532.1| hypothetical protein HMPREF9553_00369 [Escherichia coli MS 200-1] gi|312947874|gb|ADR28701.1| general secretion pathway protein A [Escherichia coli O83:H1 str. NRG 857C] gi|324014939|gb|EGB84158.1| hypothetical protein HMPREF9533_01001 [Escherichia coli MS 60-1] Length = 489 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|25152490|ref|NP_741156.1| Zinc MetalloProtease family member (zmp-1) [Caenorhabditis elegans] gi|21328419|gb|AAM48565.1|U41266_2 Zinc metalloprotease protein 1 [Caenorhabditis elegans] gi|3152406|dbj|BAA28353.1| matrix metalloproteinase [Caenorhabditis elegans] Length = 521 Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L + G + + A+K Q GL+ +G +D T++ M P Sbjct: 30 LQKYGYL--TSGDNQLSSESLSDALKNMQRMAGLEETGELDERTIQMMERP 78 >gi|241202992|ref|YP_002974088.1| peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856882|gb|ACS54549.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1263 Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V+ ++ L +G + A +A+K FQ G +P G V +T++A+ Sbjct: 1199 AVRNIQAILNNNGF--DAGVPDGEMGAKTVTAIKNFQKSVGQEPDGKVTDATVKAL 1252 >gi|209547818|ref|YP_002279735.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533574|gb|ACI53509.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1260 Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V+ ++ L +G + A +A+K FQ G +P G V +T++A+ Sbjct: 1196 AVRNIQAILNNNGF--DAGTPDGEMGAKTVTAIKNFQKSIGQEPDGKVTDATVKAL 1249 >gi|110834853|ref|YP_693712.1| hypothetical protein ABO_1992 [Alcanivorax borkumensis SK2] gi|110647964|emb|CAL17440.1| hypothetical protein ABO_1992 [Alcanivorax borkumensis SK2] Length = 357 Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+RL++ L G + + + +AV +Q + L G + TL+ + V Sbjct: 300 DVVRRLQKALAAKGY--DPVWIDGVYGSKTRAAVIAYQKDNDLAS-GQLTMQTLDHLGV 355 >gi|315182466|gb|ADT89379.1| VgrG protein [Vibrio furnissii NCTC 11218] Length = 1073 Score = 40.0 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 11/73 (15%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH----------- 149 G+ V+ ++ LI G + G +F E VK+FQ + Sbjct: 747 SYKTGSKGQEVELIQNALIKLGFDLGTYGADGSFGNTTERQVKMFQQSYTPSHSTHPDYK 806 Query: 150 GLDPSGMVDSSTL 162 G+V TL Sbjct: 807 VGKVDGIVGQGTL 819 >gi|29654387|ref|NP_820079.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii RSA 493] gi|29541654|gb|AAO90593.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii RSA 493] Length = 160 Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 33/172 (19%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-------RQTPILHSRINRIMFNPYWVI 246 Y+ V+IP+ +L + +V R V R +TP I + Sbjct: 3 TYLTVDIPSQTLTLFRDNQVIKRYRVSTARNGPGELINSEKTPRGWHIIRAKV---GEGC 59 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + + + LK ++ + + W S N Sbjct: 60 PPNTVFVERRPTGEVYSPALKRR------YPDRDWVLTRILWLSGLEVG---------KN 104 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + + R Y+H + + I+ + GC+R+ N II+L + Sbjct: 105 RLGNVDTM---RRYVYIHGSGDEIIMGKPG---SRGCIRMHNHDIIELFDEV 150 >gi|311255637|ref|XP_003126306.1| PREDICTED: matrix metalloproteinase-19-like [Sus scrofa] Length = 540 Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 5/74 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPS 154 + + G +V + L+ G L S F + A++ FQ L S Sbjct: 15 TVSGQAPGPGEKEAAV----DYLLQYGYLQKPLEGSDDFRPEDIMEALRAFQEASELPVS 70 Query: 155 GMVDSSTLEAMNVP 168 G +D +T M P Sbjct: 71 GQLDDATRVRMRQP 84 >gi|182436438|ref|YP_001824157.1| hypothetical protein SGR_2645 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777062|ref|ZP_08236327.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces cf. griseus XylebKG-1] gi|178464954|dbj|BAG19474.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657395|gb|EGE42241.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces cf. griseus XylebKG-1] Length = 238 Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 8/99 (8%) Query: 140 SAVKLFQMRHGLDPS-GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 A++ FQ HG+ P+ G T MN + + N + G + Sbjct: 71 KAIQKFQKAHGITPTIGYAGPLTWRTMNTMLAQKAAGKNPNKAKK---CPTDKGRIACVD 127 Query: 199 NIPAASLEAVENGKVGL--RSTVIVGRVDRQTPILHSRI 235 L +++GK V GR +T +I Sbjct: 128 LT--RQLSWIQDGKKLTYGPVPVRTGRNGAETRTGSKKI 164 >gi|150396145|ref|YP_001326612.1| hypothetical protein Smed_0922 [Sinorhizobium medicae WSM419] gi|150027660|gb|ABR59777.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 408 Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V+ L+ L G + +A++ FQ G G + ++A+ Sbjct: 214 ENVRDLQTLLNTLGY--DAGVPDGVNGPTTAAAIETFQGEEGRPVDGKITPELIDAV 268 >gi|110637877|ref|YP_678084.1| hypothetical protein CHU_1473 [Cytophaga hutchinsonii ATCC 33406] gi|110280558|gb|ABG58744.1| hypothetical protein CHU_1473 [Cytophaga hutchinsonii ATCC 33406] Length = 308 Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 29/154 (18%) Query: 101 PLHLGNSSVSVQRLRERLI-ISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL LG+ V +L++ L + G L+ + F + + A+K GL + V Sbjct: 80 PLKLGSRGSRVTQLQQALQNVLGAKVLEQYTKIDGIFGSGTQKALKA----AGLPVT--V 133 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + T ++ R L V Q +G + L GK Sbjct: 134 NEDTFNSIA--AKDRFIPLPVQ-------TPQSLGSK----------LYIYATGK-NFDG 173 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + V + T + + + + + + +SI+ Sbjct: 174 VMTVLQQLNTTADYSAANSSFVGSQIFSVSKSIV 207 >gi|119909119|ref|XP_590696.3| PREDICTED: matrix metalloproteinase 17 [Bos taurus] gi|297484686|ref|XP_002694502.1| PREDICTED: MMP17 protein-like [Bos taurus] gi|296478663|gb|DAA20778.1| MMP17 protein-like [Bos taurus] Length = 591 Score = 40.0 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 51 LSRFGYLPPADPETGQLQTPEELSKAIVAMQQFGGLEATGVLDEATLALMKTPRCSLPDL 110 Query: 176 LQVNLMRIK 184 V L R + Sbjct: 111 PAVALARRR 119 >gi|297458750|ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos taurus] Length = 568 Score = 40.0 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P S A ++SAV Q +G+ +G++D +T+E M P Sbjct: 8 LKSYGYLLPYDSRSSALHSGKALQSAVATMQQFYGIPVTGVLDQTTIEWMKKP 60 >gi|254447275|ref|ZP_05060742.1| ErfK/YbiS/YcfS/YnhG family protein [gamma proteobacterium HTCC5015] gi|198263414|gb|EDY87692.1| ErfK/YbiS/YcfS/YnhG family protein [gamma proteobacterium HTCC5015] Length = 184 Score = 40.0 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDV 354 Y+H T E + GCVR++N +L Sbjct: 134 SHDRYIYIHGTHEEGRIGQ---AASIGCVRMKNAEVTELFE 171 >gi|239941513|ref|ZP_04693450.1| hypothetical protein SrosN15_10992 [Streptomyces roseosporus NRRL 15998] gi|239987978|ref|ZP_04708642.1| hypothetical protein SrosN1_11776 [Streptomyces roseosporus NRRL 11379] Length = 432 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 9/86 (10%) Query: 89 LSRGGWP----ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAV 142 GG P P G S+ V RL ++L+ G G S + V Sbjct: 345 AGAGGSPNTAVAFPGRGYFKPGQSNSHVDRLGKQLVKKGYGKHYVSGPSPLWTEADRRNV 404 Query: 143 KLFQMRHG---LDPSGMVDSSTLEAM 165 + FQ G G T + Sbjct: 405 EAFQRAQGWRGGAADGYPGPETWRRL 430 >gi|332085474|gb|EGI90640.1| putative peptidoglycan binding domain protein [Shigella boydii 5216-82] Length = 466 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 369 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 426 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 427 KTDGVVGFSTL 437 >gi|323939255|gb|EGB35467.1| gspA protein [Escherichia coli E482] Length = 489 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|323934479|gb|EGB30887.1| general secretion pathway protein A [Escherichia coli E1520] Length = 477 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 380 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 437 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 438 KTDGVVGFSTL 448 >gi|319782828|ref|YP_004142304.1| lytic murein transglycosylase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168716|gb|ADV12254.1| lytic murein transglycosylase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 393 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 7/89 (7%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 T A T +A G P L R G ++ ++ L+ +L G + Sbjct: 309 TYALTAANLA-----ARLAGAPPLDPRNPETGLNNEQMKALQTKLEAKGY--DVGTVDGI 361 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 A++ Q R GL G L Sbjct: 362 LGTNTREAIRKEQTRLGLPVDGWPTPELL 390 >gi|331684965|ref|ZP_08385551.1| general secretory pathway component, cryptic [Escherichia coli H299] gi|331077336|gb|EGI48548.1| general secretory pathway component, cryptic [Escherichia coli H299] Length = 489 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|300932216|ref|ZP_07147495.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300460040|gb|EFK23533.1| conserved hypothetical protein [Escherichia coli MS 187-1] Length = 489 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|297516593|ref|ZP_06934979.1| general secretory pathway component, cryptic [Escherichia coli OP50] Length = 462 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 365 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 422 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 423 KTDGVVGFSTL 433 >gi|293412742|ref|ZP_06655410.1| conserved hypothetical protein [Escherichia coli B354] gi|291468389|gb|EFF10882.1| conserved hypothetical protein [Escherichia coli B354] Length = 192 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 95 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 152 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 153 KTDGVVGFSTL 163 >gi|282897264|ref|ZP_06305266.1| OpcA [Raphidiopsis brookii D9] gi|281197916|gb|EFA72810.1| OpcA [Raphidiopsis brookii D9] Length = 456 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L +G + + + +++++ Q +HGL +G+ T+ + Sbjct: 65 LAATGFY--TGPIDGILGPHTKTSIREVQKKHGLSETGIPTPETISVLRK 112 >gi|265984485|ref|ZP_06097220.1| lytic Murein transglycosylase [Brucella sp. 83/13] gi|264663077|gb|EEZ33338.1| lytic Murein transglycosylase [Brucella sp. 83/13] Length = 399 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 329 GAPAFDPGTPVPGLTQDQLKELQAKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 386 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 387 ADSWPTQELLDRL 399 >gi|253771853|ref|YP_003034684.1| peptidoglycan-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163251|ref|YP_003046359.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|242378850|emb|CAQ33642.1| gspA [Escherichia coli BL21(DE3)] gi|253322897|gb|ACT27499.1| Peptidoglycan-binding domain 1 protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975152|gb|ACT40823.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|253979308|gb|ACT44978.1| general secretory pathway component, cryptic [Escherichia coli BL21(DE3)] Length = 489 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|254038484|ref|ZP_04872540.1| general secretory pathway component [Escherichia sp. 1_1_43] gi|226838990|gb|EEH71013.1| general secretory pathway component [Escherichia sp. 1_1_43] gi|315617000|gb|EFU97612.1| putative peptidoglycan binding domain protein [Escherichia coli 3431] Length = 478 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 381 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 438 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 439 KTDGVVGFSTL 449 >gi|157162797|ref|YP_001460115.1| putative general secretory pathway protein A [Escherichia coli HS] gi|170018441|ref|YP_001723395.1| peptidoglycan binding domain-containing protein [Escherichia coli ATCC 8739] gi|157068477|gb|ABV07732.1| putative general secretory pathway protein A [Escherichia coli HS] gi|169753369|gb|ACA76068.1| Peptidoglycan-binding domain 1 protein [Escherichia coli ATCC 8739] Length = 489 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|118589352|ref|ZP_01546758.1| hypothetical protein SIAM614_07403 [Stappia aggregata IAM 12614] gi|118438052|gb|EAV44687.1| hypothetical protein SIAM614_07403 [Stappia aggregata IAM 12614] Length = 1363 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ V+ +++L G + SA++ FQ G+ +G VDS L+ + Sbjct: 1301 DNTAMVKEAQDKLNYLGF--DTGTPDGQMGPRTRSAIRAFQRSLGMPETGEVDSRLLDEL 1358 Query: 166 NVPV 169 Sbjct: 1359 KSQA 1362 >gi|16131202|ref|NP_417782.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|89110687|ref|AP_004467.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. W3110] gi|170082842|ref|YP_001732162.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|188496286|ref|ZP_03003556.1| putative general secretory pathway protein A [Escherichia coli 53638] gi|194439974|ref|ZP_03072033.1| putative general secretory pathway protein A [Escherichia coli 101-1] gi|238902414|ref|YP_002928210.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|256025949|ref|ZP_05439814.1| general secretory pathway component, cryptic [Escherichia sp. 4_1_40B] gi|300903571|ref|ZP_07121493.1| hypothetical protein HMPREF9536_01700 [Escherichia coli MS 84-1] gi|300918296|ref|ZP_07134900.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300946545|ref|ZP_07160810.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300954738|ref|ZP_07167171.1| hypothetical protein HMPREF9547_00663 [Escherichia coli MS 175-1] gi|301021127|ref|ZP_07185167.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|301305532|ref|ZP_07211624.1| hypothetical protein HMPREF9347_04153 [Escherichia coli MS 124-1] gi|301643857|ref|ZP_07243888.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|307140006|ref|ZP_07499362.1| general secretory pathway component, cryptic [Escherichia coli H736] gi|331644019|ref|ZP_08345148.1| general secretory pathway component, cryptic [Escherichia coli H736] gi|1170044|sp|P45756|GSPA_ECOLI RecName: Full=Probable general secretion pathway protein A gi|606257|gb|AAA58120.1| ORF_f489 [Escherichia coli str. K-12 substr. MG1655] gi|1789720|gb|AAC76348.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|85676718|dbj|BAE77968.1| general secretory pathway component, cryptic [Escherichia coli str. K12 substr. W3110] gi|169890677|gb|ACB04384.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|188491485|gb|EDU66588.1| putative general secretory pathway protein A [Escherichia coli 53638] gi|194421082|gb|EDX37110.1| putative general secretory pathway protein A [Escherichia coli 101-1] gi|238861289|gb|ACR63287.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|260447658|gb|ACX38080.1| Peptidoglycan-binding domain 1 protein [Escherichia coli DH1] gi|299881657|gb|EFI89868.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|300318289|gb|EFJ68073.1| hypothetical protein HMPREF9547_00663 [Escherichia coli MS 175-1] gi|300404444|gb|EFJ87982.1| hypothetical protein HMPREF9536_01700 [Escherichia coli MS 84-1] gi|300414557|gb|EFJ97867.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300453791|gb|EFK17411.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300839227|gb|EFK66987.1| hypothetical protein HMPREF9347_04153 [Escherichia coli MS 124-1] gi|301077760|gb|EFK92566.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|309703735|emb|CBJ03076.1| general secretory pathway component, GspA [Escherichia coli ETEC H10407] gi|315137898|dbj|BAJ45057.1| general secretory pathway component, cryptic [Escherichia coli DH1] gi|315255906|gb|EFU35874.1| general secretory pathway component, cryptic [Escherichia coli MS 85-1] gi|323959526|gb|EGB55179.1| gspA protein [Escherichia coli H489] gi|323970127|gb|EGB65401.1| gspA protein [Escherichia coli TA007] gi|331036313|gb|EGI08539.1| general secretory pathway component, cryptic [Escherichia coli H736] Length = 489 Score = 40.0 bits (92), Expect = 0.70, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|310817139|ref|YP_003965103.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Ketogulonicigenium vulgare Y25] gi|308755874|gb|ADO43803.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Ketogulonicigenium vulgare Y25] Length = 201 Score = 40.0 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 18/193 (9%), Positives = 51/193 (26%), Gaps = 44/193 (22%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 ++++T + ++ ++ + + A ++ + Sbjct: 33 MENTTQMEAPISQSVQRNVSAFHMRDWRPYFTDLRNGAILCDLESRAVHFWSQDESIYRL 92 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 V + T +++ + NP W S+ + ++P++ Sbjct: 93 YPSSVPLDETLTRRGRTQVVEMRENPTWRPTPSMRE--------RNPEW----------- 133 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G +N + + +H T + Sbjct: 134 --------------------PAVVPGGDPMNPLGVRALYLSWEY-YRIHGTHDTRKIG-- 170 Query: 336 VRFETSGCVRVRN 348 R ++GCV + N Sbjct: 171 -RPSSNGCVGLYN 182 >gi|326779144|ref|ZP_08238409.1| hypothetical protein SACT1_5003 [Streptomyces cf. griseus XylebKG-1] gi|326659477|gb|EGE44323.1| hypothetical protein SACT1_5003 [Streptomyces cf. griseus XylebKG-1] Length = 430 Score = 40.0 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 29/162 (17%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE--KAIA------- 83 ++ + E +V + A S + E + + + Sbjct: 267 PGADNKYVTELGRMLVERGGKRYYAVGPGPEWSAADRRATEAFQRAQGWQGKEADGLPGP 326 Query: 84 FYQDILSRGGWPELPI----------------RPLHLGNSSVSVQRLRERLIISGDLDPS 127 +L+ GG ++P G ++ V RL +L+ G Sbjct: 327 HTWRLLATGGGRDIPAAGAGGSPNTAVAFPGRGYFKPGQTNSHVDRLGRQLVKKGYGKHY 386 Query: 128 -KGLSVAFDAYVESAVKLFQMRHG---LDPSGMVDSSTLEAM 165 G + V+ FQ G G T + Sbjct: 387 LSGPDPRWTEADRRNVEAFQRAQGWRGGAADGYPGPETWRRL 428 >gi|300785440|ref|YP_003765731.1| peptidoglycan binding domain-containing protein [Amycolatopsis mediterranei U32] gi|299794954|gb|ADJ45329.1| peptidoglycan binding domain-containing protein [Amycolatopsis mediterranei U32] Length = 359 Score = 40.0 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ + L G + A+ +A+K +Q ++ L+ SG + + + Sbjct: 121 GPDVREVNANLRALGY--RTAPAGDAYTDGTATALKAWQRKNKLEESGALGMG--DVAVL 176 Query: 168 PVDLRIRQ 175 P ++R+ Sbjct: 177 PGEVRVDS 184 >gi|254485906|ref|ZP_05099111.1| cation-transporting ATPase PacS [Roseobacter sp. GAI101] gi|214042775|gb|EEB83413.1| cation-transporting ATPase PacS [Roseobacter sp. GAI101] Length = 716 Score = 40.0 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 21/181 (11%) Query: 110 SVQRLR----ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS-STLEA 164 +V + RL G L S A V+ AV F L S STL Sbjct: 401 AVPAVATAAIARLYAMGFLVKSGTALERL-AEVDIAV--FDKTGTLTLSSSTGKLSTLSD 457 Query: 165 MNVPVDLRIRQLQVN-LMR--IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 V ++ Q + + R + L + + IP ++AV +G+ V + Sbjct: 458 TQASVARKLAQSSHHPMSRALLSVLPPVPLAEVTQMQEIPGFGMQAVLDGQ-----PVRM 512 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI--HMIDEKGK 279 GR RI P +P + I + ++ + L+ I ++ GK Sbjct: 513 GRGSWLGADFDGLGLRIGDGPAIPLPLTDIPR---PGVKTALEGLRSLGIAPQILSGDGK 569 Query: 280 E 280 Sbjct: 570 T 570 >gi|148651983|ref|YP_001279076.1| lytic murein transglycosylase [Psychrobacter sp. PRwf-1] gi|148571067|gb|ABQ93126.1| lytic murein transglycosylase [Psychrobacter sp. PRwf-1] Length = 445 Score = 40.0 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 11/84 (13%) Query: 86 QDILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + I + G WP +PL +S V+ L++RL +G +KG+ +A Sbjct: 367 RAINGQPGIQKAWPRY-EQPL----TSAQVRNLQQRLTSAGY--DTKGIDGIMGTNTRNA 419 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 +Q +G G V + A+ Sbjct: 420 FAKWQAANGQTADGFVTQRSASAL 443 >gi|291613141|ref|YP_003523298.1| ErfK/YbiS/YcfS/YnhG family protein [Sideroxydans lithotrophicus ES-1] gi|291583253|gb|ADE10911.1| ErfK/YbiS/YcfS/YnhG family protein [Sideroxydans lithotrophicus ES-1] Length = 388 Score = 40.0 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + ++H TP P F+ R ++GCV + N Sbjct: 213 HDGHGIWLHGTP-PDTFSRPPRA-SNGCVVLAN 243 >gi|149523997|ref|XP_001512754.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 558 Score = 40.0 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 118 LIISGDL-DPSKGLSVAFDA-YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LI G L P + F + A++ FQ L +G +D T M P Sbjct: 29 LIQYGYLQPPLEETDGQFGEAEMAEALRSFQEASELPVTGWLDRETKTRMAQP 81 >gi|82494640|gb|ABB79949.1| translycolase-related protein [uncultured bacterium pES01019D12] Length = 409 Score = 40.0 bits (92), Expect = 0.72, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 7/100 (7%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 E A + +A I G P L L S+ V +L+E L G + Sbjct: 314 SEYYALSVGRLA--DRIAGAGKLRNTPPDADLKL--SNGLVLQLQENLNTLGY--DAGEP 367 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 SAV +Q G+ G +D++ LEA++ V Sbjct: 368 DGVPGPMTRSAVSRYQQSKGVIADGYLDATILEAIDKDVS 407 >gi|271965761|ref|YP_003339957.1| peptidoglycan binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270508936|gb|ACZ87214.1| peptidoglycan binding domain-containing protein [Streptosporangium roseum DSM 43021] Length = 568 Score = 40.0 bits (92), Expect = 0.73, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G V++L++ L G ++ FD +AV F Sbjct: 128 PGTRGDDVRQLQKALRRLG---HRAPVTGVFDQATIAAVSRF 166 >gi|213586043|ref|ZP_03367869.1| LysM domain-containing protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 53 Score = 40.0 bits (92), Expect = 0.73, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 +H T P +SGC+R+ L + TP Sbjct: 6 YLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 45 >gi|304392266|ref|ZP_07374208.1| N-acetylmuramoyl-L-alanine amidase AmiD [Ahrensia sp. R2A130] gi|303296495|gb|EFL90853.1| N-acetylmuramoyl-L-alanine amidase AmiD [Ahrensia sp. R2A130] Length = 260 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 4/63 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 L G++ VQ L+ L + G FD V+ FQ G+ D + Sbjct: 183 LQEGDAGDPVQALQGMLELYGY---GLECGGNFDRKTRDVVEAFQRHFRPKRVDGVADIA 239 Query: 161 TLE 163 T+ Sbjct: 240 TIA 242 >gi|294663733|ref|ZP_06729286.1| type III secretion system hopAJ-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606403|gb|EFF49595.1| type III secretion system hopAJ-like protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 218 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 NS+ + L++RL G G+ A ++ FQ L G +S L Sbjct: 156 PLNSTAQITELQQRLTDKGF--DVGGIDGVLGARTRQGIRAFQRSQQLPQDGYASTSLLA 213 Query: 164 AMNV 167 + Sbjct: 214 RLRA 217 >gi|254694130|ref|ZP_05155958.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 3 str. Tulya] Length = 410 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 340 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 397 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 398 ADSWPTQELLDRL 410 >gi|196228036|ref|ZP_03126903.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196227439|gb|EDY21942.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 345 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTP 361 Y+H T E + GC+R+R +++++ DTP Sbjct: 134 RGIYIHGTTEEEKLGKP---VSYGCIRMRSKDVLEVFDDAAIDTP 175 >gi|328882661|emb|CCA55900.1| hypothetical protein SVEN_2614 [Streptomyces venezuelae ATCC 10712] Length = 464 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 4/70 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G S+ V++L ++L+ G L D A + Q G G Sbjct: 393 GSFRPGQSNAYVEKLGKQLVKRGFGKHYLSGPGPRWTEADRRNVEAFQRAQGWRGAAADG 452 Query: 156 MVDSSTLEAM 165 T + Sbjct: 453 YPGPETWRRL 462 >gi|254511690|ref|ZP_05123757.1| peptidoglycan binding domain protein [Rhodobacteraceae bacterium KLH11] gi|221535401|gb|EEE38389.1| peptidoglycan binding domain protein [Rhodobacteraceae bacterium KLH11] Length = 344 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G + + L+ RL +G ++G E+A+ +Q +GL +G Sbjct: 284 GLTLQDRKELQRRLTSTGY--DTQGADGVIGKNTEAAISAYQQANGLAVTG 332 >gi|218531528|ref|YP_002422344.1| lytic murein transglycosylase [Methylobacterium chloromethanicum CM4] gi|218523831|gb|ACK84416.1| lytic murein transglycosylase [Methylobacterium chloromethanicum CM4] Length = 393 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 WP R LG ++RL+ L G + AV+ +Q+R Sbjct: 320 ALAAPWPNGAARLDGLG-----LKRLQAGLAAQGLYAGE--QDGRAGPKLREAVRQYQIR 372 Query: 149 HGLDPSGMVDSSTLEAMNVPV 169 GL G + LE + Sbjct: 373 EGLPADGYARPALLERLEGRP 393 >gi|99082831|ref|YP_614985.1| lytic murein transglycosylase [Ruegeria sp. TM1040] gi|99039111|gb|ABF65723.1| Lytic murein transglycosylase [Ruegeria sp. TM1040] Length = 455 Score = 40.0 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L+ERL +G ++G+ +AV+ +Q GL P G Sbjct: 403 KELQERLTRAGF--STEGIDGRIGPKTIAAVRAYQSAKGLMPDG 444 >gi|261214431|ref|ZP_05928712.1| lytic Murein transglycosylase [Brucella abortus bv. 3 str. Tulya] gi|260916038|gb|EEX82899.1| lytic Murein transglycosylase [Brucella abortus bv. 3 str. Tulya] Length = 399 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 329 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 386 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 387 ADSWPTQELLDRL 399 >gi|221369246|ref|YP_002520342.1| Membrane-bound lytic murein transglycosylase B [Rhodobacter sphaeroides KD131] gi|221162298|gb|ACM03269.1| Membrane-bound lytic murein transglycosylase B [Rhodobacter sphaeroides KD131] Length = 413 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G + Q L+ RL +G + G + E+A+ ++ +GL +G Sbjct: 353 GMTKADRQELQRRLTSAGY--DTGGTDGVVGSKTEAAISAYEAANGLPVTG 401 >gi|170725529|ref|YP_001759555.1| peptidoglycan-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810876|gb|ACA85460.1| Peptidoglycan-binding domain 1 protein [Shewanella woodyi ATCC 51908] Length = 538 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 18/35 (51%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 FD +E +K FQ +HGL + S TL +N Sbjct: 487 SRFDIQLEEQLKRFQRKHGLRADAIAGSQTLVQLN 521 >gi|298292132|ref|YP_003694071.1| lytic murein transglycosylase [Starkeya novella DSM 506] gi|296928643|gb|ADH89452.1| lytic murein transglycosylase [Starkeya novella DSM 506] Length = 415 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +Q ++ RL +G + G AV FQ R G++P G L A+ Sbjct: 358 EIQEVQRRLTRAGL--DTGGTDGRVGNMTMRAVANFQRRMGVEPDGYAGLDVLAALR 412 >gi|237815846|ref|ZP_04594843.1| lytic murein transglycosylase [Brucella abortus str. 2308 A] gi|237789144|gb|EEP63355.1| lytic murein transglycosylase [Brucella abortus str. 2308 A] Length = 413 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 343 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 400 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 401 ADSWPTQELLDRL 413 >gi|225852929|ref|YP_002733162.1| lytic murein transglycosylase [Brucella melitensis ATCC 23457] gi|225641294|gb|ACO01208.1| lytic murein transglycosylase [Brucella melitensis ATCC 23457] Length = 413 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 343 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 400 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 401 ADSWPTQELLDRL 413 >gi|218283137|ref|ZP_03489216.1| hypothetical protein EUBIFOR_01802 [Eubacterium biforme DSM 3989] gi|218216086|gb|EEC89624.1| hypothetical protein EUBIFOR_01802 [Eubacterium biforme DSM 3989] Length = 471 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + + L+ L G F + FQ HGL+ +G D +T + Sbjct: 389 DDNAKALQVYLQYLGY--NVDRTDTYFSNTSSQGLANFQQDHGLEVTGDCDKTTWD 442 >gi|126464704|ref|YP_001045817.1| lytic murein transglycosylase [Rhodobacter sphaeroides ATCC 17029] gi|126106515|gb|ABN79045.1| lytic murein transglycosylase [Rhodobacter sphaeroides ATCC 17029] Length = 413 Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G + Q L+ RL +G + G + E+A+ ++ +GL +G Sbjct: 353 GMTKADRQELQRRLTSAGY--DTGGTDGVVGSKTEAAISAYEAANGLPVTG 401 >gi|223982972|ref|ZP_03633183.1| hypothetical protein HOLDEFILI_00462 [Holdemania filiformis DSM 12042] gi|223965080|gb|EEF69381.1| hypothetical protein HOLDEFILI_00462 [Holdemania filiformis DSM 12042] Length = 263 Score = 40.0 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 8/85 (9%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GG P L G+ L++ L G ++ L F +A+ +Q +GL Sbjct: 182 GGTSGFP--TLREGSVGCYTLVLQDALNALGY--STRWLDGKFGNATRTALIQYQRDNGL 237 Query: 152 DPSGMV----DSSTLEAMNVPVDLR 172 G+ +++ +V +LR Sbjct: 238 GADGIAAARPGNASRRKSSVSGELR 262 >gi|148690305|gb|EDL22252.1| matrix metallopeptidase 25 [Mus musculus] Length = 562 Score = 40.0 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P+ + ++ A+K+ Q GL +G +D T++ M P Sbjct: 38 LTRYGYLPPADPVHAQMQSLEKLQDAIKVMQRFAGLPETGQMDPMTIKTMRKP 90 >gi|75677470|ref|NP_001028511.1| matrix metalloproteinase-25 precursor [Mus musculus] gi|123796969|sp|Q3U435|MMP25_MOUSE RecName: Full=Matrix metalloproteinase-25; Short=MMP-25; Flags: Precursor gi|74181785|dbj|BAE32600.1| unnamed protein product [Mus musculus] gi|109730167|gb|AAI12380.1| Matrix metallopeptidase 25 [Mus musculus] Length = 615 Score = 40.0 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P+ + ++ A+K+ Q GL +G +D T++ M P Sbjct: 91 LTRYGYLPPADPVHAQMQSLEKLQDAIKVMQRFAGLPETGQMDPMTIKTMRKP 143 >gi|92118253|ref|YP_577982.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gi|91801147|gb|ABE63522.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 269 Score = 40.0 bits (92), Expect = 0.78, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 20/97 (20%) Query: 316 YSRNNTY-------MHDTPEPILFNNVVRFETSGCVRVRNII-----DLD--VWLLKDTP 361 ++ + +H T + GCVR+ L +L T Sbjct: 81 PMPHSIFFTKVGHAIHGTFSEGSLGVP---VSHGCVRLSRAHASTLYALVQKEGVLNTTV 137 Query: 362 ---TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 SR + + ++ T V P + Y +A Sbjct: 138 TLTGSSRVALARNPRGKRKTDVARRDPAPGYQSYDTA 174 >gi|256263591|ref|ZP_05466123.1| lytic Murein transglycosylase [Brucella melitensis bv. 2 str. 63/9] gi|263093640|gb|EEZ17645.1| lytic Murein transglycosylase [Brucella melitensis bv. 2 str. 63/9] Length = 410 Score = 40.0 bits (92), Expect = 0.78, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 340 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 397 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 398 ADSWPTQELLDRL 410 >gi|239832326|ref|ZP_04680655.1| lytic murein transglycosylase [Ochrobactrum intermedium LMG 3301] gi|239824593|gb|EEQ96161.1| lytic murein transglycosylase [Ochrobactrum intermedium LMG 3301] Length = 411 Score = 40.0 bits (92), Expect = 0.78, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 341 GAPAFDPGNPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRAEQLRLGMP 398 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 399 ADSWPTQELLDKL 411 >gi|254504789|ref|ZP_05116940.1| lytic murein transglycosylase subfamily [Labrenzia alexandrii DFL-11] gi|222440860|gb|EEE47539.1| lytic murein transglycosylase subfamily [Labrenzia alexandrii DFL-11] Length = 398 Score = 40.0 bits (92), Expect = 0.78, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + +++L+ +L G + A +AV+ Q + G+ Sbjct: 328 GAPRYDAGNPDPGLNDAQMKQLQTKLSALGY--DVGKIDGILGAGTRNAVQQVQQQLGMP 385 Query: 153 PSGMVDSSTLEAM 165 + L + Sbjct: 386 ADAWPTPALLNRL 398 >gi|157786912|ref|NP_001099395.1| matrix metalloproteinase-17 [Rattus norvegicus] gi|149063179|gb|EDM13502.1| matrix metallopeptidase 17 (predicted) [Rattus norvegicus] Length = 587 Score = 40.0 bits (92), Expect = 0.78, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 32/147 (21%) Query: 87 DILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAV 142 + + GG P L LG L G L P+ + + A+ Sbjct: 31 ALAAHGGCAAPAPRAEDLSLGVEW---------LSKFGYLPPADPATGQLQTQEELSKAI 81 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP-----------VDLRIRQLQVNL--------MRI 183 Q GL+ +G++D +TL M P R RQ + R+ Sbjct: 82 TAMQQFGGLETTGILDEATLALMKTPRCSLPDLPLGAQSRRRRQTPLPTKWSKRNLSWRV 141 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVEN 210 + R + + +L+ + Sbjct: 142 RTFPRDSPLGRDTVRALMYYALKVWSD 168 >gi|218681755|ref|ZP_03529530.1| Peptidoglycan-binding domain 1 protein [Rhizobium etli CIAT 894] Length = 225 Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ ++ L +G + A +A+K FQ G +P G V +T++A+ Sbjct: 161 AIRNIQAILNNNGF--DAGAPDGEMGAKTVTAIKSFQKSIGQEPDGKVTDATVKAL 214 >gi|220923540|ref|YP_002498842.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219948147|gb|ACL58539.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 211 Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 12/101 (11%) Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-------MHDT 326 +D + + V+ E P+ FR + + + + + + +H T Sbjct: 41 VDGRQRYVWPVSTGMAGYETPSGSFRPFRMERDHFSKEWDDAPMPYSVFFTPVGHAIHGT 100 Query: 327 PEPILFNNVVRFETSGCV--RVRNIIDLDVWLLKDTPTWSR 365 R + GCV RVRN L + + + +R Sbjct: 101 SHVRQIG---RPASHGCVRLRVRNAATLFSLVRAEGLSNTR 138 >gi|159044413|ref|YP_001533207.1| putative membrane-bound lytic murein transglycosylase [Dinoroseobacter shibae DFL 12] gi|157912173|gb|ABV93606.1| putative membrane-bound lytic murein transglycosylase [Dinoroseobacter shibae DFL 12] Length = 370 Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 + ++ GG P P G + L+E L +G + G E+A++ Sbjct: 290 HLSERIAGGGPLRTPFPPDANGLTKADRVTLQEGLTRAGF--DTGGADGVVGPNTEAAIR 347 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 +Q GL +G+ + A+ Sbjct: 348 AYQRARGLPVTGVPSMEMVRAVR 370 >gi|113970604|ref|YP_734397.1| lytic murein transglycosylase [Shewanella sp. MR-4] gi|113885288|gb|ABI39340.1| lytic murein transglycosylase [Shewanella sp. MR-4] Length = 424 Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S +++L+ +L SG + ++ FQ Sbjct: 348 NGGEPLKVAPPEQPRLSREQIKQLQTKLNESGF--DVGKPDGVLGRNSSAGIQAFQRSKN 405 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 406 MIADGFPSPEVFSALGIS 423 >gi|117920902|ref|YP_870094.1| lytic murein transglycosylase [Shewanella sp. ANA-3] gi|117613234|gb|ABK48688.1| lytic murein transglycosylase [Shewanella sp. ANA-3] Length = 430 Score = 40.0 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S +++L+ +L SG + ++ FQ Sbjct: 354 NGGEPLKVAPPEQPRLSREQIKQLQTKLNESGF--DVGKPDGVLGRNSSAGIQAFQRSKN 411 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 412 MIADGFPSPEVFSALGIS 429 >gi|323454425|gb|EGB10295.1| hypothetical protein AURANDRAFT_62829 [Aureococcus anophagefferens] Length = 749 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + G++ + L + G + F A V V+ Q GL G+V Sbjct: 511 KSVKEGDADDDAAEV---LKLLGKEPGAG-----FTAEVSDEVRKIQRAAGLVDDGVVGP 562 Query: 160 ST 161 T Sbjct: 563 KT 564 >gi|254710487|ref|ZP_05172298.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis B2/94] gi|256369864|ref|YP_003107375.1| lytic murein transglycosylase [Brucella microti CCM 4915] gi|260169117|ref|ZP_05755928.1| lytic murein transglycosylase [Brucella sp. F5/99] gi|261325511|ref|ZP_05964708.1| lytic Murein transglycosylase [Brucella neotomae 5K33] gi|261758626|ref|ZP_06002335.1| lytic Murein transglycosylase [Brucella sp. F5/99] gi|265989092|ref|ZP_06101649.1| lytic Murein transglycosylase [Brucella pinnipedialis M292/94/1] gi|294852773|ref|ZP_06793446.1| peptidoglycan binding domain-containing protein [Brucella sp. NVSL 07-0026] gi|256000027|gb|ACU48426.1| lytic murein transglycosylase [Brucella microti CCM 4915] gi|261301491|gb|EEY04988.1| lytic Murein transglycosylase [Brucella neotomae 5K33] gi|261738610|gb|EEY26606.1| lytic Murein transglycosylase [Brucella sp. F5/99] gi|264661289|gb|EEZ31550.1| lytic Murein transglycosylase [Brucella pinnipedialis M292/94/1] gi|294821362|gb|EFG38361.1| peptidoglycan binding domain-containing protein [Brucella sp. NVSL 07-0026] Length = 410 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 340 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 397 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 398 ADSWPTQELLDRL 410 >gi|225627895|ref|ZP_03785931.1| lytic murein transglycosylase [Brucella ceti str. Cudo] gi|225617058|gb|EEH14104.1| lytic murein transglycosylase [Brucella ceti str. Cudo] Length = 413 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 343 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 400 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 401 ADSWPTQELLDRL 413 >gi|218661838|ref|ZP_03517768.1| putative peptidoglycan binding (cell wall degradation) protein [Rhizobium etli IE4771] Length = 318 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V ++++L+ G + +A+ FQ G+ +G L A+ Sbjct: 142 QPSELVMGIQQQLVRRGLY--NGIPDGIIGPRTSAAILFFQETVGMAQTGEATPEVLAAL 199 Query: 166 NVPVD 170 Sbjct: 200 KTDAA 204 >gi|62290341|ref|YP_222134.1| transglycolase [Brucella abortus bv. 1 str. 9-941] gi|82700264|ref|YP_414838.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024572|ref|YP_001935340.1| peptidoglycan binding domain 1 [Brucella abortus S19] gi|254689640|ref|ZP_05152894.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 6 str. 870] gi|254730671|ref|ZP_05189249.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 4 str. 292] gi|256045076|ref|ZP_05447977.1| Putative peptidoglycan binding domain 1 [Brucella melitensis bv. 1 str. Rev.1] gi|256114005|ref|ZP_05454782.1| Putative peptidoglycan binding domain 1 [Brucella melitensis bv. 3 str. Ether] gi|260546881|ref|ZP_05822620.1| lytic murein transglycosylase [Brucella abortus NCTC 8038] gi|260565325|ref|ZP_05835809.1| lytic murein transglycosylase [Brucella melitensis bv. 1 str. 16M] gi|260884183|ref|ZP_05895797.1| lytic Murein transglycosylase [Brucella abortus bv. 9 str. C68] gi|265991505|ref|ZP_06104062.1| lytic Murein transglycosylase [Brucella melitensis bv. 1 str. Rev.1] gi|265995343|ref|ZP_06107900.1| lytic Murein transglycosylase [Brucella melitensis bv. 3 str. Ether] gi|297248727|ref|ZP_06932445.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62196473|gb|AAX74773.1| hypothetical transglycolase [Brucella abortus bv. 1 str. 9-941] gi|82616365|emb|CAJ11422.1| Putative peptidoglycan binding domain 1 [Brucella melitensis biovar Abortus 2308] gi|189020144|gb|ACD72866.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19] gi|260095931|gb|EEW79808.1| lytic murein transglycosylase [Brucella abortus NCTC 8038] gi|260151393|gb|EEW86487.1| lytic murein transglycosylase [Brucella melitensis bv. 1 str. 16M] gi|260873711|gb|EEX80780.1| lytic Murein transglycosylase [Brucella abortus bv. 9 str. C68] gi|262766456|gb|EEZ12245.1| lytic Murein transglycosylase [Brucella melitensis bv. 3 str. Ether] gi|263002289|gb|EEZ14864.1| lytic Murein transglycosylase [Brucella melitensis bv. 1 str. Rev.1] gi|297175896|gb|EFH35243.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|326409471|gb|ADZ66536.1| Putative peptidoglycan binding domain 1 [Brucella melitensis M28] gi|326539178|gb|ADZ87393.1| lytic murein transglycosylase [Brucella melitensis M5-90] Length = 410 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 340 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 397 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 398 ADSWPTQELLDRL 410 >gi|291222645|ref|XP_002731327.1| PREDICTED: GK21871-like [Saccoglossus kowalevskii] Length = 535 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P++ D V A+K FQ L +G++D T M +P Sbjct: 27 LKKYGYLSPNRVKFG--DMEVTQAIKNFQRMTNLKVTGLMDERTKAGMQMP 75 >gi|260755169|ref|ZP_05867517.1| lytic Murein transglycosylase [Brucella abortus bv. 6 str. 870] gi|260758388|ref|ZP_05870736.1| lytic Murein transglycosylase [Brucella abortus bv. 4 str. 292] gi|260762214|ref|ZP_05874557.1| lytic Murein transglycosylase [Brucella abortus bv. 2 str. 86/8/59] gi|260668706|gb|EEX55646.1| lytic Murein transglycosylase [Brucella abortus bv. 4 str. 292] gi|260672646|gb|EEX59467.1| lytic Murein transglycosylase [Brucella abortus bv. 2 str. 86/8/59] gi|260675277|gb|EEX62098.1| lytic Murein transglycosylase [Brucella abortus bv. 6 str. 870] Length = 399 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 329 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 386 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 387 ADSWPTQELLDRL 399 >gi|190890966|ref|YP_001977508.1| peptidoglycan binding (cell wall degradation) protein [Rhizobium etli CIAT 652] gi|218516730|ref|ZP_03513570.1| putative peptidoglycan binding (cell wall degradation) protein [Rhizobium etli 8C-3] gi|190696245|gb|ACE90330.1| putative peptidoglycan binding (cell wall degradation) protein [Rhizobium etli CIAT 652] Length = 318 Score = 40.0 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 2/62 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V ++++L+ G + +A+ FQ G+ +G L A+ Sbjct: 147 VMGIQQQLVRRGLY--NGIPDGIIGPRTSAAILFFQETVGMAQTGEATPEVLAALKTDAA 204 Query: 171 LR 172 R Sbjct: 205 GR 206 >gi|255083761|ref|XP_002508455.1| predicted protein [Micromonas sp. RCC299] gi|226523732|gb|ACO69713.1| predicted protein [Micromonas sp. RCC299] Length = 1690 Score = 40.0 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 8/85 (9%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 LP+R + LG++ V L+E + +D + +Q + L SG Sbjct: 95 LPMRDMGLGDAGTDVGMLQE--------AFGLPATGVYDKNTSRKIAQWQAANNLPRSGY 146 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLM 181 +++ E +++R++ V Sbjct: 147 FGAASREVFARSAQMQMRRVVVTSE 171 >gi|108757031|ref|YP_634502.1| hypothetical protein MXAN_6377 [Myxococcus xanthus DK 1622] gi|108460911|gb|ABF86096.1| hypothetical protein MXAN_6377 [Myxococcus xanthus DK 1622] Length = 352 Score = 40.0 bits (92), Expect = 0.82, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 92 GGWPELPIRPLHLGNSSV--SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G P+ L LG+ + L++RL G + S A++ Q+ + Sbjct: 272 GTGPDRETYQLELGHVDPLGTFPGLQDRLANLGYFSCCEQDSEHH-PVTRQALERLQLAY 330 Query: 150 GLDPSGMVDSSTLEAMNV 167 GL P+G +D ++ E + Sbjct: 331 GLKPTGKLDGASRELLKA 348 >gi|113477754|ref|YP_723815.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110168802|gb|ABG53342.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 342 Score = 40.0 bits (92), Expect = 0.82, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 18/156 (11%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE-------AM 165 ++ LI L+P + F +A+ FQ+ +G + T++ A Sbjct: 27 EIQAILIDLNMLNP--PIDGIFGPLTTAALHRFQVEQKSGEAGYLGEKTIKKLWDAKEAN 84 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 + +R + +++++ LL ++ E + V V R Sbjct: 85 IFAAPIILRTTKETILKLRPLLSSQLSDSEKHQMSAHQEFELLAYTPVRNHFRVAF-RNY 143 Query: 226 RQTPILHSRINRIMFNPYWV--------IPRSIIQK 253 + + ++ Y P SI K Sbjct: 144 KYNGLGVWYVDEKKVEIYENNQVVHPKLKPESIKIK 179 >gi|256425043|ref|YP_003125696.1| peptidoglycan-binding domain 1 protein [Chitinophaga pinensis DSM 2588] gi|256039951|gb|ACU63495.1| Peptidoglycan-binding domain 1 protein [Chitinophaga pinensis DSM 2588] Length = 260 Score = 40.0 bits (92), Expect = 0.82, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 15/35 (42%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 F V+ A FQ +H L P G+V + T Sbjct: 31 GEADGVFSREVQQATITFQQKHNLQPDGVVGNKTY 65 >gi|149699604|ref|XP_001494346.1| PREDICTED: similar to Matrix metalloproteinase-15 precursor (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) (SMCP-2) [Equus caballus] Length = 652 Score = 40.0 bits (92), Expect = 0.82, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTL 162 G +S L+ L + G L + + SA+ Q +G+ +G++D T Sbjct: 22 GMASP----LQNWLRLYGYLPQPSRHMSTLRSAQTLASALAEMQRFYGIPVTGVLDEETK 77 Query: 163 EAMNVP 168 M P Sbjct: 78 AWMKRP 83 >gi|84502809|ref|ZP_01000922.1| Membrane bound lytic murein transglycosylase B [Oceanicola batsensis HTCC2597] gi|84388792|gb|EAQ01662.1| Membrane bound lytic murein transglycosylase B [Oceanicola batsensis HTCC2597] Length = 467 Score = 40.0 bits (92), Expect = 0.82, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 RGGWP+ R L Q L+ L +G + G+ A++ +Q R G Sbjct: 398 RGGWPD-GERALKRAER----QELQSLLTRAGY--STGGIDGKIGPNTVRAIRGYQQRVG 450 Query: 151 LDPSG 155 + P G Sbjct: 451 MAPDG 455 >gi|306841151|ref|ZP_07473867.1| lytic murein transglycosylase [Brucella sp. BO2] gi|306288777|gb|EFM60095.1| lytic murein transglycosylase [Brucella sp. BO2] Length = 428 Score = 40.0 bits (92), Expect = 0.83, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P+G L + Sbjct: 375 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPNGHPSKEVLSVLRR 427 >gi|156717858|ref|NP_001096469.1| matrix metallopeptidase 17 (membrane-inserted) [Xenopus (Silurana) tropicalis] gi|134024244|gb|AAI36207.1| LOC100125088 protein [Xenopus (Silurana) tropicalis] Length = 588 Score = 40.0 bits (92), Expect = 0.83, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P ++ + A+K Q GL +G++D TLE M P Sbjct: 45 LTKFGYLPPPDPVTGQLQTQEELSKAIKAMQEFGGLKATGILDEPTLELMKTP 97 >gi|293605185|ref|ZP_06687574.1| hypothetical protein HMPREF0004_3150 [Achromobacter piechaudii ATCC 43553] gi|292816441|gb|EFF75533.1| hypothetical protein HMPREF0004_3150 [Achromobacter piechaudii ATCC 43553] Length = 254 Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--PSGM 156 RPL +G V+ L+ RL G L F V FQ PSG+ Sbjct: 7 SRPLSIGMQGADVEELQLRLA--GF--RGTLLDGEFGPGTTLQVSKFQADFMGKSSPSGV 62 Query: 157 VDSSTLEAMNV 167 D++T EA++ Sbjct: 63 ADTATFEAIDA 73 >gi|261315622|ref|ZP_05954819.1| lytic Murein transglycosylase [Brucella pinnipedialis M163/99/10] gi|261318059|ref|ZP_05957256.1| lytic Murein transglycosylase [Brucella pinnipedialis B2/94] gi|261297282|gb|EEY00779.1| lytic Murein transglycosylase [Brucella pinnipedialis B2/94] gi|261304648|gb|EEY08145.1| lytic Murein transglycosylase [Brucella pinnipedialis M163/99/10] Length = 399 Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 329 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 386 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 387 ADSWPTQELLDRL 399 >gi|238497486|ref|XP_002379978.1| matrix metalloproteinase, putative [Aspergillus flavus NRRL3357] gi|220693252|gb|EED49597.1| matrix metalloproteinase, putative [Aspergillus flavus NRRL3357] Length = 274 Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVE-SAVKLFQMRHGLDP-SGMVDSSTLEAMN 166 +++R L G LD SK F + +A++ FQ +GL +G + T +AM Sbjct: 21 KKIRAYLQSLGYLDISKSPDGGFSKAEDYAAIRKFQHFYGLKDVTGSYNEKTRQAMT 77 >gi|114571066|ref|YP_757746.1| lytic murein transglycosylase [Maricaulis maris MCS10] gi|114341528|gb|ABI66808.1| lytic murein transglycosylase [Maricaulis maris MCS10] Length = 406 Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 15/153 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGI---DSDIPIISKETI 75 GL A D+++ + + + + Sbjct: 259 WAMRGLRPASGEWQA---DDLMRAARLELPAGGQAPGFLTFPNFRVIKRYNNSTSYAIGV 315 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 A IA D G WPE PL + + ++ L G S Sbjct: 316 AHLADRIA--GDPALVGPWPE-NNPPLTRSQT----REVQATLNALGF--DSGTPDGLAG 366 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +A++ FQ +G G + + +A+ Sbjct: 367 PNTRAALRDFQRANGHLADGYLGRAMYDAVLAS 399 >gi|91976974|ref|YP_569633.1| lytic murein transglycosylase [Rhodopseudomonas palustris BisB5] gi|91683430|gb|ABE39732.1| Lytic murein transglycosylase [Rhodopseudomonas palustris BisB5] Length = 408 Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA 164 + VQ ++ RL +G + G AV+ +Q R G+ G L Sbjct: 346 MTLAEVQEMQTRLTRAGF--DTGGTDGRVGNDTMKAVRDYQTRAGMQPADGYGGLKLLAR 403 Query: 165 MNVPV 169 + Sbjct: 404 LRQGP 408 >gi|146276693|ref|YP_001166852.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554934|gb|ABP69547.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides ATCC 17025] Length = 589 Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 30/164 (18%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESY----HSIVNDRFDNFLARVDMGIDSDIPIISKET 74 + G + E + I I ++ D +A +++ P + ET Sbjct: 95 FIADGRNFREAFAAPGQVRPEIEALAVPGPEPIPDE--DAAVATPVAPLEA-APPLPDET 151 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ +++ A + R Q L+ L G + AF Sbjct: 152 PAEAQQSEARL-SLAER--------------------QELQAALQWFGFYA--AAIDGAF 188 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 + +++ +Q GL+ +G++ + A+ D +L + Sbjct: 189 GSGTRASMAAWQGSQGLEATGVLTARQRAALLDSYDRAQAELGL 232 >gi|114706398|ref|ZP_01439300.1| hypothetical protein FP2506_01400 [Fulvimarina pelagi HTCC2506] gi|114538259|gb|EAU41381.1| hypothetical protein FP2506_01400 [Fulvimarina pelagi HTCC2506] Length = 547 Score = 39.6 bits (91), Expect = 0.85, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 103 HLGNSS---VSVQRL-RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+ +V R+ +E L G + +A++ FQ +GL+ +G + Sbjct: 473 EPGSDGTPPQAVVRMAQEALNSLGY--EAGQADGLMGTSTRNAIRAFQADNGLETTGTLS 530 Query: 159 SSTLEAMNVPVD 170 ++ A+ + Sbjct: 531 AAFASALTQAIA 542 >gi|34498927|ref|NP_903142.1| hypothetical protein CV_3472 [Chromobacterium violaceum ATCC 12472] gi|34104776|gb|AAQ61133.1| hypothetical protein CV_3472 [Chromobacterium violaceum ATCC 12472] Length = 208 Score = 39.6 bits (91), Expect = 0.85, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 Y+H + + + R + GCVR++N +I+L + T W Sbjct: 157 SYDRAIYIHGAGDHVPWG---RPSSLGCVRMKNRDVIELFDAVPNGTDVW 203 >gi|321462022|gb|EFX73049.1| hypothetical protein DAPPUDRAFT_325673 [Daphnia pulex] Length = 465 Score = 39.6 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 6/77 (7%) Query: 118 LIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 L G L P + S+ + E AVK FQ GL+ +G +D T + M P Sbjct: 29 LASFGYLHPRYKNTSNSIISGYFFELAVKNFQSFFGLNLTGELDEETKKEMRKPRCGHPD 88 Query: 175 QLQ---VNLMRIKKLLE 188 Q+ + R + + Sbjct: 89 QIIPEDSSTQRKRNINN 105 >gi|296231221|ref|XP_002761064.1| PREDICTED: matrix metalloproteinase-15 [Callithrix jacchus] Length = 666 Score = 39.6 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + SA+ Q +G+ +G++D T + M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSTQILASALAEMQRFYGIPVTGVLDEETKKWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIK 184 +++ NL R + Sbjct: 117 FGVRVKANLRRRR 129 >gi|182438498|ref|YP_001826217.1| hypothetical protein SGR_4705 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467014|dbj|BAG21534.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 430 Score = 39.6 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 11/91 (12%) Query: 86 QDI--LSRGGWP----ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAY 137 +DI GG P P G ++ V RL +L+ G G + Sbjct: 338 RDIPAAGAGGSPNTAVAFPGRGYFKPGQTNSHVDRLGRQLVKKGYGKHYLSGPDPRWTEA 397 Query: 138 VESAVKLFQMRHG---LDPSGMVDSSTLEAM 165 V+ FQ G G T + Sbjct: 398 DRRNVEAFQRAQGWRGGAADGYPGPETWRRL 428 >gi|153009055|ref|YP_001370270.1| lytic murein transglycosylase [Ochrobactrum anthropi ATCC 49188] gi|151560943|gb|ABS14441.1| lytic murein transglycosylase [Ochrobactrum anthropi ATCC 49188] Length = 412 Score = 39.6 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 1/73 (1%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G D + F AV+ QMR G+ Sbjct: 341 GAPAFDPGNPVPGLTQDQLKELQTKLQARGY-DMGGKIDGVFGLLTRDAVRAEQMRLGMP 399 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 400 ADSWPTQELLDRL 412 >gi|146340910|ref|YP_001205958.1| putative peptidase [Bradyrhizobium sp. ORS278] gi|146193716|emb|CAL77733.1| conserved hypothetical protein; putative peptidase (caspase-like) [Bradyrhizobium sp. ORS278] Length = 488 Score = 39.6 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 3/75 (4%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 ++ RL G ++ FD +K +Q G +G + +A+ Sbjct: 366 VQRRLTGLGF---DTKMTGVFDDETRGVMKRWQAARGFPSTGFLTKLQHKALLAEPQPAP 422 Query: 174 RQLQVNLMRIKKLLE 188 V + + Sbjct: 423 ATAAVGDEAKPRRPK 437 >gi|319783643|ref|YP_004143119.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169531|gb|ADV13069.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 375 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 8/73 (10%) Query: 294 PNFIFRQDPGKINAMASTKIEFYSRN---NTYMHDTPEPILFNNVVRFETSGCVRV--RN 348 + G N + + I Y + +H T P ++GC R+ + Sbjct: 302 GQYKDGMPGGGQNPLGARAIYLYDGKKDTHLRIHGTIAPQSIGTS---ASNGCFRMINEH 358 Query: 349 IIDLDVWLLKDTP 361 ++DL + T Sbjct: 359 VMDLYSRVRVGTK 371 >gi|195430660|ref|XP_002063372.1| GK21871 [Drosophila willistoni] gi|194159457|gb|EDW74358.1| GK21871 [Drosophila willistoni] Length = 597 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D SA++ FQ GL+ +G +DS T++ M++P Sbjct: 42 LSQFGYLPASARNPESSGLQDKQTWVSAIEEFQSFAGLNITGELDSETMKLMSLPRCGVR 101 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 102 DRVGSADSRSKRYALQGSRWR 122 >gi|320531575|ref|ZP_08032522.1| Tat pathway signal sequence [Actinomyces sp. oral taxon 171 str. F0337] gi|320136211|gb|EFW28212.1| Tat pathway signal sequence [Actinomyces sp. oral taxon 171 str. F0337] Length = 391 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%) Query: 95 PELPI-RPLHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 LP R G +++L L G D F SA+ +Q GL Sbjct: 135 GSLPAWRTFEAGMENGEDIRQLETLLQGMGYFDYEP--DNHFSWATTSAIMKWQKDVGLP 192 Query: 153 PSGMV 157 +G + Sbjct: 193 QTGTI 197 >gi|297183959|gb|ADI20079.1| membrane-bound lytic murein transglycosylase b [uncultured alpha proteobacterium EB080_L06A09] Length = 411 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 7/75 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP P L L+ L G +A++ FQ+ GL P Sbjct: 343 WPRGP-GALKFNEK----VELQNLLNQLGYDVGEA--DGIIGPNSIAAIRKFQISVGLIP 395 Query: 154 SGMVDSSTLEAMNVP 168 GM + L M Sbjct: 396 DGMSNKDLLLKMRTS 410 >gi|162452358|ref|YP_001614725.1| hypothetical protein sce4082 [Sorangium cellulosum 'So ce 56'] gi|161162940|emb|CAN94245.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 433 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ RL G + + +AV FQMR GL +G D +T + Sbjct: 378 IQGRLKNLGLYEGAVDGGE--GPATHAAVSQFQMRCGLPVTGEADDATRRRL 427 >gi|158300838|ref|XP_320656.4| AGAP011867-PA [Anopheles gambiae str. PEST] gi|157013354|gb|EAA00513.4| AGAP011867-PA [Anopheles gambiae str. PEST] Length = 100 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 115 RERLIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L+ G L+ S + +E AV+ Q GL +G VD TL M P Sbjct: 1 QKYLMQFGYLEKSNIETGNLRTIEELEQAVRSLQRFGGLKETGTVDEETLALMQRP 56 >gi|156389621|ref|XP_001635089.1| predicted protein [Nematostella vectensis] gi|156222179|gb|EDO43026.1| predicted protein [Nematostella vectensis] Length = 260 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 65/206 (31%), Gaps = 21/206 (10%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-GMVDSSTLEAMN 166 V L+ L+ S +DP S A+D AV FQ + L+ + G+ D +T + Sbjct: 1 GKDVTILQNLLLRSKYVDPIGT-SGAYDKPTSKAVAQFQQGNKLNSTPGVFDIATASLVL 59 Query: 167 VP------------VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 +L + + + ++ Y + P + +G + Sbjct: 60 KQLMYDGYHDDGTIPKGYKFKLYIPVYADR--TKETNATLYDNQHKPIYTFIVRCHGSMD 117 Query: 215 LR--STVIVGRVDRQTP--ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 L V + TP ++ +N N P +++ +N Sbjct: 118 LETGMAVNQLTTNGNTPTGLMSFDLNSPEPNHKSFGPFPVVRAVEGIKGNAAIGRDAENT 177 Query: 271 IHMIDEKGKEVFVEE-VDWNSPEPPN 295 G + E +WN+ P Sbjct: 178 FLPYYRDGLLLHTGEWANWNASMPMP 203 >gi|35903119|ref|NP_919397.1| matrix metalloproteinase-14 [Danio rerio] gi|32251076|gb|AAP74483.1| membrane-type matrix metalloproteinase 1 alpha [Danio rerio] gi|124297207|gb|AAI31865.1| Matrix metalloproteinase 14 (membrane-inserted) alpha [Danio rerio] Length = 574 Score = 39.6 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTL 162 G S V+ L G L P + A + + SA+ Q +GL +G +D +TL Sbjct: 25 GTSDKEVRPEAW-LQQYGYLPPGDVRAQAIRSPKSINSAISAMQKFYGLTVTGTMDPATL 83 Query: 163 EAMNVP----VDLRIRQLQVNLMRIK 184 AM P D +L+ NL + + Sbjct: 84 SAMQRPRCGVPDKFGSELKSNLRKKR 109 >gi|304393915|ref|ZP_07375839.1| N-acetylmuramoyl-L-alanine amidase [Ahrensia sp. R2A130] gi|303293890|gb|EFL88266.1| N-acetylmuramoyl-L-alanine amidase [Ahrensia sp. R2A130] Length = 307 Score = 39.6 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 11/95 (11%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 A Y D+ + N + L+ L +G P Sbjct: 132 AREQYADLSGA------VAKTSTPPNVDERYRYLQRLLTAAGY--PHGLADGIKGPRTIK 183 Query: 141 AVKLFQMRHGLDPSGMVDSST---LEAMNVPVDLR 172 A+K +Q GL SG D +T L + V R Sbjct: 184 AIKDYQEFMGLPKSGEFDKATVVNLRVIEETVSPR 218 >gi|254720679|ref|ZP_05182490.1| Putative peptidoglycan binding domain 1 [Brucella sp. 83/13] gi|265985729|ref|ZP_06098464.1| lytic Murein transglycosylase [Brucella sp. 83/13] gi|306839369|ref|ZP_07472185.1| lytic murein transglycosylase [Brucella sp. NF 2653] gi|264664321|gb|EEZ34582.1| lytic Murein transglycosylase [Brucella sp. 83/13] gi|306405617|gb|EFM61880.1| lytic murein transglycosylase [Brucella sp. NF 2653] Length = 412 Score = 39.6 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D + + A +A++ FQ R+GL+P+G L + Sbjct: 359 ELQTHLKALGYYDGN--IDGKIGATSRAAIEAFQQRNGLEPNGHPSKEVLSVLRR 411 >gi|114047835|ref|YP_738385.1| lytic murein transglycosylase [Shewanella sp. MR-7] gi|113889277|gb|ABI43328.1| lytic murein transglycosylase [Shewanella sp. MR-7] Length = 424 Score = 39.6 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S +++L+ +L SG + ++ FQ Sbjct: 348 NGGEPLKVAPPEQPRLSREQIKQLQSKLNESGF--DVGKPDGVLGRNSSAGIQAFQRSKN 405 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 406 MIADGFPSPEVFSALGIS 423 >gi|254697782|ref|ZP_05159610.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 2 str. 86/8/59] gi|256257890|ref|ZP_05463426.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 9 str. C68] Length = 372 Score = 39.6 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 302 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 359 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 360 ADSWPTQELLDRL 372 >gi|114705678|ref|ZP_01438581.1| hypothetical protein FP2506_14469 [Fulvimarina pelagi HTCC2506] gi|114538524|gb|EAU41645.1| hypothetical protein FP2506_14469 [Fulvimarina pelagi HTCC2506] Length = 955 Score = 39.6 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + +++RL G + + V +Q +GL +G +D L + Sbjct: 30 ADIALVQDRLNALGY--DVGSFDGIAGSRTLAGVSRYQTENGLANTGQLDRVLLSHITEK 87 Query: 169 VDL 171 Sbjct: 88 TQA 90 >gi|19338606|gb|AAL86723.1|AF416776_1 unknown [Methylobacterium extorquens AM1] Length = 56 Score = 39.6 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 5/34 (14%) Query: 323 MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 +H T EP +SGC+R+ ++ IDL Sbjct: 14 IHGTLEPHSIGKS---VSSGCIRMINQDAIDLFN 44 >gi|6478687|gb|AAF13957.1|AF200549_1 P1 protease [Soybean mosaic virus] Length = 292 Score = 39.6 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 28/209 (13%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L GD+ K E A++ FQ D + V + + Sbjct: 30 LKREGDIQVRKH---------EEALRKFQEAFDHDAD------IQRRLLVNKHSPTQFTK 74 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 N + +++L +++ + + E NGK + V T + S Sbjct: 75 KNGLTLRRLTLEQVRAKEAAIARQKQEEEDFLNGKYEQQFYAGV----STTKSMKSEGES 130 Query: 238 IMFNPY-WVI-PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + F W P+ I K + R+ P Y+ + + + + GK V E + + Sbjct: 131 VGFRTKYWRPTPKKISNKRAVPQHRK-PTYVLEEVLSLASKNGKLV--EFITEGKGKNVK 187 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + + G K Y+H Sbjct: 188 VCYVRKHGATLP----KFSLPHEEGKYVH 212 >gi|13470809|ref|NP_102378.1| hypothetical protein mll0608 [Mesorhizobium loti MAFF303099] gi|14021552|dbj|BAB48164.1| mll0608 [Mesorhizobium loti MAFF303099] Length = 426 Score = 39.6 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 22/158 (13%) Query: 223 RVDRQTPILHSRINRIMFNPYWVI--PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 + + P + I S + ++ +Y + KG Sbjct: 268 KPFKVKPEFVPQDVEFTGYEPGTIVIDTSARRLYLVESFSTARRYAIAVGREGLQFKGTV 327 Query: 281 VFVEEVDWNSPEP------------PNFIFRQDPGKINAMASTKIEFYSRN---NTYMHD 325 ++ +W P + G N + + I Y + +H Sbjct: 328 AVGDKQEWPRWIPTLDMQKREPKHYGQYKDGMPGGGQNPLGARAIYLYDGKKDTHLRIHG 387 Query: 326 TPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 T P ++GC R+ +++DL + T Sbjct: 388 TIAPQSIGTS---ASNGCFRMINEHVMDLYSRVRVGTK 422 >gi|89070405|ref|ZP_01157707.1| lipoprotein, putative [Oceanicola granulosus HTCC2516] gi|89043971|gb|EAR50148.1| lipoprotein, putative [Oceanicola granulosus HTCC2516] Length = 182 Score = 39.6 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 V L+ L G L A+D ++AV+ FQ G S ++ +T Sbjct: 112 VTNLQRALQARGALTGPA--DAAYDTRTQAAVQAFQSEIGGPDSPVLARTT 160 >gi|292492868|ref|YP_003528307.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus halophilus Nc4] gi|291581463|gb|ADE15920.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus halophilus Nc4] Length = 162 Score = 39.6 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 27/161 (16%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS----RINRIMFNPYWVIPR 248 Y+ V+ L + KV + V + + + ++I P Sbjct: 5 ESYIRVHFLEQRLTLRQGRKVVFETPVSLAKNGPGEEMGSECTPRGWHQIRAKIGAGCPV 64 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW-NSPEPPNFIFRQDPGKINA 307 + + + L ++ + + W + EP F GK++ Sbjct: 65 NTVFRGRRPTGEIYTPKLGRAYPE------RDWILTRILWLSGLEPGKNRF----GKVDT 114 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 M Y+H P+ + GC+R+ N Sbjct: 115 MGRY---------IYIHGVPDETAMGIPG---SHGCIRIHN 143 >gi|260461930|ref|ZP_05810175.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium opportunistum WSM2075] gi|259032177|gb|EEW33443.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium opportunistum WSM2075] Length = 1344 Score = 39.6 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +VQ ++ L +G + G ++A+ FQ + + +G VD ++A+ Sbjct: 1287 AVQNIQRILNKNGY--DAGGADGKMGQKTKTAIMAFQTDNKMPATGAVDEKLVKAL 1340 >gi|148254183|ref|YP_001238768.1| hypothetical protein BBta_2723 [Bradyrhizobium sp. BTAi1] gi|146406356|gb|ABQ34862.1| peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family [Bradyrhizobium sp. BTAi1] Length = 455 Score = 39.6 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 12/67 (17%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 N +H P P + GCVR+ L T W + ++ Sbjct: 67 NGVALHGGPLPGY------AASHGCVRM--PYGFAEKLFDRT--WIGMRV--IIAPGDVA 114 Query: 379 PVKLATE 385 PV+ + Sbjct: 115 PVEFSHP 121 >gi|126323935|ref|XP_001378518.1| PREDICTED: similar to membrane-type-4 matrix metalloproteinase [Monodelphis domestica] Length = 589 Score = 39.6 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P ++ + A+ Q GL+ +G++D +TL+ M P Sbjct: 43 LSRFGYLPPPDPVTGQLQTQEELAKAIAAMQRFGGLEATGVLDEATLQLMKTPRCSLPDL 102 Query: 176 LQVNLMRIKKLLEQKM 191 R + Sbjct: 103 TVPGTRRKRNTPALTK 118 >gi|86750075|ref|YP_486571.1| lytic murein transglycosylase [Rhodopseudomonas palustris HaA2] gi|86573103|gb|ABD07660.1| Lytic murein transglycosylase [Rhodopseudomonas palustris HaA2] Length = 408 Score = 39.6 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA 164 + VQ ++ RL +G + G AV+ +Q R G+ G L Sbjct: 346 MTLAEVQEMQTRLTRAGF--DTGGTDGRVGNDTMKAVRDYQARAGMQPADGYGGLKLLAR 403 Query: 165 MNVPV 169 + Sbjct: 404 LRQGP 408 >gi|46367534|emb|CAG25893.1| serine protease [Soybean mosaic virus] Length = 309 Score = 39.6 bits (91), Expect = 0.90, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 17/187 (9%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 E A++ FQ D+ + V I+ + N + ++ L ++ R Sbjct: 59 EEALRKFQEAFDQ------DAGIQRRLLVNKHSSIQSTKKNGLTLRHLTLEQ--ARAKEA 110 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY-WVIPRSIIQKDMMA 257 I E E + + T + + F W I++ Sbjct: 111 AIARRKQE--EEDFLNGKYEQQFYTGVSTTKSMKFEGGSVGFRTKYWRPTPKKIKERRAP 168 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 R P Y+ + + + + GK V E + + + + G + K Sbjct: 169 PQRTKPTYVLEEVLSIASKSGKLV--EFITGGKGKRAKVCYVRKHGAMLP----KFSLPH 222 Query: 318 RNNTYMH 324 Y+H Sbjct: 223 EEGKYIH 229 >gi|261219210|ref|ZP_05933491.1| lytic Murein transglycosylase [Brucella ceti M13/05/1] gi|261322271|ref|ZP_05961468.1| lytic Murein transglycosylase [Brucella ceti M644/93/1] gi|260924299|gb|EEX90867.1| lytic Murein transglycosylase [Brucella ceti M13/05/1] gi|261294961|gb|EEX98457.1| lytic Murein transglycosylase [Brucella ceti M644/93/1] Length = 399 Score = 39.6 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 329 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 386 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 387 ADSWPTQELLDRL 399 >gi|224074161|ref|XP_002304280.1| predicted protein [Populus trichocarpa] gi|222841712|gb|EEE79259.1| predicted protein [Populus trichocarpa] Length = 298 Score = 39.6 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L++ G L + FD ES V +Q GL +G +D T+ + +P Sbjct: 3 ELKKYFNRFGYLPIPDTNNFTDTFDTQFESVVLAYQTNLGLPETGKLDFDTISMIVLP 60 >gi|158422718|ref|YP_001524010.1| hypothetical protein AZC_1094 [Azorhizobium caulinodans ORS 571] gi|158329607|dbj|BAF87092.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 306 Score = 39.6 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P V +++ L G ++ + AV+ F+ GL G + Sbjct: 236 PGEVARP----NRVLGVQKTLARLGY--GPLKVTGSLSPETRLAVQRFERDRGLPVDGEI 289 Query: 158 DSSTLEAMNV 167 + ++ Sbjct: 290 TDRLVRELST 299 Score = 36.9 bits (84), Expect = 6.6, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 V ++ L G D E+A++ ++ L +G + L + Sbjct: 156 VADVQRELSRRGFYDGPA--DGLTGPKTEAAIRAYEQSARLKVTGTASDALLAQIRRTP 212 >gi|254708118|ref|ZP_05169946.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis M163/99/10] gi|256031981|ref|ZP_05445595.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis M292/94/1] gi|256061502|ref|ZP_05451646.1| Putative peptidoglycan binding domain 1 [Brucella neotomae 5K33] Length = 372 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 302 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 359 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 360 ADSWPTQELLDRL 372 >gi|222149148|ref|YP_002550105.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium vitis S4] gi|221736133|gb|ACM37096.1| N-acetylmuramoyl-L-alanine amidase [Agrobacterium vitis S4] Length = 252 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 92 GGWPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W E G+ V+ L+ L + G ++ FDA E V+ FQ+ Sbjct: 166 GHWVEPTAITGGRFFQRGDRGQPVEALQSMLSLYGY---PVEINADFDAVTEGVVRSFQL 222 Query: 148 RHG-LDPSGMVDSSTLE 163 G+ D ST++ Sbjct: 223 HFRPSKVDGVADYSTID 239 >gi|254476983|ref|ZP_05090369.1| lytic murein transglycosylase [Ruegeria sp. R11] gi|214031226|gb|EEB72061.1| lytic murein transglycosylase [Ruegeria sp. R11] Length = 464 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L+ERL SG + G+ +A++ +Q+ GL P G Sbjct: 413 ELQERLSRSGY--DTGGVDGRIGPRTRAALRAYQLAAGLTPDG 453 >gi|149917832|ref|ZP_01906327.1| hypothetical protein PPSIR1_12763 [Plesiocystis pacifica SIR-1] gi|149821352|gb|EDM80754.1| hypothetical protein PPSIR1_12763 [Plesiocystis pacifica SIR-1] Length = 1350 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 46/151 (30%), Gaps = 12/151 (7%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNS------ 107 + S + S + AQ A A I++ G + E L + Sbjct: 950 GSTGSAEARASSGLDAESAQ-WAQLILARADGAGIVADGRFGERSREALRRFQARAGLED 1008 Query: 108 SVSV-QRLRERLII--SGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V R L+ G L P + DA A+ FQ GLD S D++T Sbjct: 1009 HGRVDAPTRTALVQAGLGYLAPGTEFAPTGTLDARTRDALLRFQADEGLDTSARFDAATR 1068 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 M + L R+ L E Sbjct: 1069 AKMLEGLREDWPWLAAQDRRLPGLPELDGPR 1099 >gi|194381846|dbj|BAG64292.1| unnamed protein product [Homo sapiens] Length = 305 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F + A++ FQ L SG +D +T M P Sbjct: 32 LSQYGYLQKPLEGSNNFKPEDITEALRAFQEASELPVSGQLDDATRARMRQP 83 >gi|149377682|ref|ZP_01895418.1| Membrane-bound lytic murein transglycosylase B [Marinobacter algicola DG893] gi|149358035|gb|EDM46521.1| Membrane-bound lytic murein transglycosylase B [Marinobacter algicola DG893] Length = 398 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I G P + S ++ L++ L G + SA++ +Q Sbjct: 310 RIAGAGKLQNPPPEDM-PALSRDNILTLQKALNEQGF--DTGKPDGILGPNTRSAIRGYQ 366 Query: 147 MRHGLDPSGMVDSSTLEAMNV 167 ++GL G + L+A+ V Sbjct: 367 SKNGLVADGYPGDTVLDALEV 387 >gi|77465241|ref|YP_354744.1| membrane-bound lytic murein transglycosylase B [Rhodobacter sphaeroides 2.4.1] gi|77389659|gb|ABA80843.1| Membrane-bound lytic murein transglycosylase B [Rhodobacter sphaeroides 2.4.1] Length = 462 Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G + Q L+ RL +G + G + E+A+ ++ +GL +G Sbjct: 402 GMTKADRQELQRRLTSAGY--DTGGTDGVVGSKTEAAISAYEAANGLPVTG 450 >gi|254714480|ref|ZP_05176291.1| Putative peptidoglycan binding domain 1 [Brucella ceti M644/93/1] gi|254717378|ref|ZP_05179189.1| Putative peptidoglycan binding domain 1 [Brucella ceti M13/05/1] Length = 372 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 302 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 359 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 360 ADSWPTQELLDRL 372 >gi|255593471|ref|XP_002535877.1| conserved hypothetical protein [Ricinus communis] gi|223521663|gb|EEF26508.1| conserved hypothetical protein [Ricinus communis] Length = 197 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + + ++H TP ++ R + GCV + N Sbjct: 22 NGHGIWLHGTPS-NTYSRPPRA-SDGCVVLTNPD 53 >gi|196233583|ref|ZP_03132425.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196222435|gb|EDY16963.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 166 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 38/164 (23%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G + V++ + + ++ + S + GR TP ++ Sbjct: 5 GEYSIEVDLEEQRAYLLFHHRMVMESPICSGRTQYPTPTGTFQV---------------- 48 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 L +D + M+D G+ V + + D + P PP F P Sbjct: 49 -------LEKDALHRSSFYGKMVDAAGRTV-LADADADMPVPPGMRFVNAPMP------Y 94 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + F + +H+ P + GCVR+ + + Sbjct: 95 FMRFTN--GVGLHEGYLPGY------PASHGCVRMPKEQAIAFY 130 >gi|166713682|ref|ZP_02244889.1| transglycosylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 425 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L++RL G G+ A ++ FQ L G +S L + Sbjct: 368 AQITELQQRLTDKGF--DVGGIDGVLGAQTRQGIRAFQHSQQLPQDGYASTSLLARLRT 424 >gi|326664684|ref|XP_700781.5| PREDICTED: matrix metalloproteinase-16 [Danio rerio] Length = 589 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 118 LIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + SA+ Q ++GL+ +G ++ T++ M P Q Sbjct: 19 LQKYGYLHPTPPNMAAQRSAQTMHSAIAAMQHKYGLNITGTLNKYTIDWMKKPRCGVPDQ 78 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNI 200 L+ +K G ++ +I Sbjct: 79 LKAGSASRRKKRYALTGQKWQREHI 103 >gi|153011356|ref|YP_001372570.1| peptidoglycan binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151563244|gb|ABS16741.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi ATCC 49188] Length = 1196 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 99 IRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +PL G+ +V+ ++ L +G +A+ FQ +G P+G Sbjct: 1125 SKPLTTGSVDMKKAVRNIQLILQKNGY--DVGTADGLMGGKTRAAIAAFQKANGQTPTGD 1182 Query: 157 VDSSTLE 163 VD ++ Sbjct: 1183 VDQQLVQ 1189 >gi|148559504|ref|YP_001259339.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|148370761|gb|ABQ60740.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] Length = 372 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 302 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 359 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 360 ADSWPTQELLDRL 372 >gi|91788993|ref|YP_549945.1| ErfK/YbiS/YcfS/YnhG [Polaromonas sp. JS666] gi|91698218|gb|ABE45047.1| ErfK/YbiS/YcfS/YnhG [Polaromonas sp. JS666] Length = 176 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 7/46 (15%) Query: 321 TYMHDTPEPILFNNVVR-FETSGCVRVRNII--DLDVWLLKDTPTW 363 Y+H P+ + + GCVR+RN +L + T W Sbjct: 117 IYIHGCPD----GLPMGEPLSLGCVRMRNADIVELFDLVEPGTEVW 158 >gi|148254487|ref|YP_001239072.1| hypothetical protein BBta_3046 [Bradyrhizobium sp. BTAi1] gi|146406660|gb|ABQ35166.1| hypothetical protein BBta_3046 [Bradyrhizobium sp. BTAi1] Length = 231 Score = 39.6 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 9/143 (6%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRF--DNFLARVDMGIDSDIPIISKETIAQTEKAIAF 84 P+ E + V + D + + A + Sbjct: 89 NANPLPRPRPTEADLSPFDPKVTETRPPDTRVVEPRPAEQRTADARPDQKYADPLADLVR 148 Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 GG +P G ++ V ++ L G + + ++A++ Sbjct: 149 ----SVSGGQGASRAQP-TPGGNARRVAAVQRALTEYGY--GQLKPTGMIGSETQAAIQK 201 Query: 145 FQMRHGLDPSGMVDSSTLEAMNV 167 F+ L +G + + + + Sbjct: 202 FERERKLPVTGQLSDRLVRELAI 224 >gi|290968327|ref|ZP_06559868.1| NlpC/P60 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290781602|gb|EFD94189.1| NlpC/P60 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 227 Score = 39.6 bits (91), Expect = 0.94, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 ++ +L G + + +AV FQ + SG+V + T Sbjct: 2 IQRQLRKIGY---NIRDDGRYSPQTAAAVADFQRKRQFAVSGIVGAQTY 47 >gi|257455301|ref|ZP_05620536.1| lytic murein transglycosylase [Enhydrobacter aerosaccus SK60] gi|257447263|gb|EEV22271.1| lytic murein transglycosylase [Enhydrobacter aerosaccus SK60] Length = 447 Score = 39.6 bits (91), Expect = 0.94, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 V++L++RL G +KG + A + +Q H P G + Sbjct: 392 EVRQLQQRLTAMGY--DTKGSDGVVGTNTKLAFQRWQADHNQIPDGFISKR 440 >gi|24373558|ref|NP_717601.1| membrane-bound lytic transglycolase-related protein [Shewanella oneidensis MR-1] gi|24347876|gb|AAN55045.1|AE015642_5 membrane-bound lytic transglycolase-related protein [Shewanella oneidensis MR-1] Length = 433 Score = 39.6 bits (91), Expect = 0.94, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S +++L+ +L SG + ++ FQ + Sbjct: 357 NGGEPLKVTPPEQPRLSRELIKQLQTKLNESGF--DVGKPDGVLGRNSTAGIQAFQRSNN 414 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 415 MIADGFPSPEVFTALGIS 432 >gi|224370554|ref|YP_002604718.1| hypothetical protein HRM2_34790 [Desulfobacterium autotrophicum HRM2] gi|223693271|gb|ACN16554.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 328 Score = 39.6 bits (91), Expect = 0.95, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 R R + L + +D V+ Q L P G+V T +A+N Sbjct: 39 RARAALLAKLPSE-RQTRTYDTTTFKLVRAIQEERQLRPDGVVGKQTADAVN 89 >gi|18413635|dbj|BAA82707.2| membrane-type-4 matrix metalloproteinase [Homo sapiens] Length = 606 Score = 39.6 bits (91), Expect = 0.95, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 59 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 118 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 119 PVLTQARRRRQAPAP 133 >gi|297693480|ref|XP_002824046.1| PREDICTED: matrix metalloproteinase-17-like, partial [Pongo abelii] Length = 181 Score = 39.6 bits (91), Expect = 0.96, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 2 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 61 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 62 PVLTQARRRRQAPAP 76 >gi|112382270|ref|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo sapiens] gi|296439485|sp|Q9ULZ9|MMP17_HUMAN RecName: Full=Matrix metalloproteinase-17; Short=MMP-17; AltName: Full=Membrane-type matrix metalloproteinase 4; Short=MT-MMP 4; Short=MTMMP4; AltName: Full=Membrane-type-4 matrix metalloproteinase; Short=MT4-MMP; Short=MT4MMP; Flags: Precursor Length = 603 Score = 39.6 bits (91), Expect = 0.96, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 56 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 115 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 116 PVLTQARRRRQAPAP 130 >gi|311257207|ref|XP_003127010.1| PREDICTED: matrix metalloproteinase-15-like [Sus scrofa] Length = 656 Score = 39.6 bits (91), Expect = 0.96, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T M P D Sbjct: 38 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 97 Query: 172 RIRQLQVNLMRIK 184 +++ NL R + Sbjct: 98 FGVRVKANLRRRR 110 >gi|291415807|ref|XP_002724141.1| PREDICTED: matrix metalloproteinase 17, partial [Oryctolagus cuniculus] Length = 541 Score = 39.6 bits (91), Expect = 0.96, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 21/114 (18%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------- 168 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 3 LSRFGYLPPADSTTGQLQTQEELSKAITAMQQFGGLETTGILDEATLALMKTPRCSLPDL 62 Query: 169 ----VDLRIRQLQVNL--------MRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 R RQ R++ R + + +L+ + Sbjct: 63 PPVAQARRRRQAPAPTKWNKRNLSWRVRTFPRDSPLGRDTVRALMYYTLKVWSD 116 >gi|89055359|ref|YP_510810.1| lytic murein transglycosylase [Jannaschia sp. CCS1] gi|88864908|gb|ABD55785.1| Lytic murein transglycosylase [Jannaschia sp. CCS1] Length = 425 Score = 39.6 bits (91), Expect = 0.96, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L+ERL +G + + E+A++ +Q +GL +G +S L + Sbjct: 374 ELQERLNSAGY--DAGTPDGVIGSGTEAAIEAYQSANGLPVTGEPSASLLRRLR 425 >gi|262377636|ref|ZP_06070856.1| lytic murein transglycosylase B [Acinetobacter lwoffii SH145] gi|262307395|gb|EEY88538.1| lytic murein transglycosylase B [Acinetobacter lwoffii SH145] Length = 430 Score = 39.6 bits (91), Expect = 0.97, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ L+ G + A++ Q R GL P+G L Sbjct: 361 PGTSRAERREIQQFLLNRGY--DIGAVDGLIGDKTRQAIRQEQQRLGLSPTGRAGQQILR 418 Query: 164 AMNVPVDLRIRQ 175 A R+ Q Sbjct: 419 AFRNENAKRMMQ 430 >gi|328544946|ref|YP_004305055.1| ErfK/YbiS/YcfS/YnhG family [polymorphum gilvum SL003B-26A1] gi|326414688|gb|ADZ71751.1| ErfK/YbiS/YcfS/YnhG family [Polymorphum gilvum SL003B-26A1] Length = 413 Score = 39.6 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 99 IRPLH----LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PL + +V+ ++ L G + A++LFQ L + Sbjct: 227 GSPLRMIVTPRDGGDTVRTVQRLLDRMGFAP--GPVDGVLGRRTREAIRLFQEGAELPIT 284 Query: 155 GMVDSSTLEAM 165 G + + + A+ Sbjct: 285 GNLTAGLVSAL 295 >gi|149201097|ref|ZP_01878072.1| Lytic murein transglycosylase [Roseovarius sp. TM1035] gi|149145430|gb|EDM33456.1| Lytic murein transglycosylase [Roseovarius sp. TM1035] Length = 427 Score = 39.6 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 7/78 (8%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 RG WP PL S ++ RL G + + +A++ FQ G Sbjct: 357 RGAWPR-GYNPL----SFDEKMDMQRRLQRKGF--AIEKIDGIIGPNTINAIRAFQQSVG 409 Query: 151 LDPSGMVDSSTLEAMNVP 168 + P G+ L + Sbjct: 410 VTPDGLPSQELLALLKRS 427 >gi|119713534|gb|ABL97587.1| lytic murein transglycosylase [uncultured marine bacterium EB0_35D03] Length = 348 Score = 39.6 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 5/85 (5%) Query: 83 AFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A+ D + GG +L + + S +V +++ L + G + A Sbjct: 268 AYLSDRIKGGG--KLSAKSIDEPLLSKENVMQIQNTLNLLGY--DTGTPDGMAGPKTREA 323 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMN 166 ++FQ GL G + L+ + Sbjct: 324 TRMFQSDIGLVADGYIGYELLQVLQ 348 >gi|326331906|ref|ZP_08198193.1| peptidoglycan binding domain-containing protein [Nocardioidaceae bacterium Broad-1] gi|325950403|gb|EGD42456.1| peptidoglycan binding domain-containing protein [Nocardioidaceae bacterium Broad-1] Length = 450 Score = 39.6 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L G++ SV+ L+ L + ++ D + A+ +Q R G Sbjct: 376 WAANSRPLLKRGSAGESVRDLQRALSAT-SAPERPKITGVLDWNTQVALVAYQKRLGRTA 434 Query: 154 SGMVDSSTL 162 +GM T Sbjct: 435 NGMATEVTW 443 >gi|54311164|gb|AAH45610.1| MMP17 protein [Homo sapiens] Length = 606 Score = 39.6 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 59 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 118 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 119 PVLTQARRRRQAPAP 133 >gi|37589932|gb|AAH40507.2| MMP17 protein [Homo sapiens] Length = 606 Score = 39.6 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 59 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 118 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 119 PVLTQARRRRQAPAP 133 >gi|222149735|ref|YP_002550692.1| lytic murein transglycosylase [Agrobacterium vitis S4] gi|221736717|gb|ACM37680.1| lytic murein transglycosylase [Agrobacterium vitis S4] Length = 405 Score = 39.6 bits (91), Expect = 1.00, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 14/121 (11%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAF---YQDILSRGG----WPELPIRPLHLGN 106 A + + K+ A A+A +I GG WP P L + Sbjct: 291 LAGANGPGFLMTSNFFTIKKYNAADTYALAVGLLADEIAGYGGMQQKWPR-PDGTLDI-- 347 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L+ R+ G + + F + ++A+ Q R G+ G LE + Sbjct: 348 --KEKFELQTRMKALGYY--NGEVDGNFGSGSKAAISAIQQRLGMQGDGEPSKPLLEMLR 403 Query: 167 V 167 Sbjct: 404 R 404 >gi|218458840|ref|ZP_03498931.1| putative peptidoglycan binding (cell wall degradation) protein [Rhizobium etli Kim 5] Length = 236 Score = 39.6 bits (91), Expect = 1.00, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V ++++L+ G + +A+ FQ G+ +G L A+ Sbjct: 60 QPSELVMGIQQQLVRRGLY--NGIPDGIIGPRTSAAILFFQETVGMAQTGEATPEVLAAL 117 Query: 166 NVPVD 170 Sbjct: 118 KTDAA 122 >gi|84687917|ref|ZP_01015783.1| Membrane-bound lytic murein transglycosylase B [Maritimibacter alkaliphilus HTCC2654] gi|84664054|gb|EAQ10552.1| Membrane-bound lytic murein transglycosylase B [Rhodobacterales bacterium HTCC2654] Length = 439 Score = 39.6 bits (91), Expect = 1.00, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + + ++ RL G + G A E+A++ F+ +G+ +G + L Sbjct: 375 GLTLDDRKDIQRRLTAKGF--DTDGTDGVIGAKSEAAIRAFEAANGMPSTGQATKALLVK 432 Query: 165 MNVPVDL 171 + Sbjct: 433 LGGRPRA 439 >gi|257462709|ref|ZP_05627117.1| hypothetical protein FuD12_02594 [Fusobacterium sp. D12] gi|317060351|ref|ZP_07924836.1| predicted protein [Fusobacterium sp. D12] gi|313686027|gb|EFS22862.1| predicted protein [Fusobacterium sp. D12] Length = 128 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 13/57 (22%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + + RL G + AV+ FQ +GL P G V +T+ + Sbjct: 83 KEIDRRLSSLGYTGKN-------------AVREFQTDYGLVPDGKVGRNTIRVLKEN 126 >gi|318042393|ref|ZP_07974349.1| hypothetical protein SCB01_11821 [Synechococcus sp. CB0101] Length = 127 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 321 TYMHDTPEPILFNNVVR-FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 +H P +SGC+R+ + WL ++TP + I+ Sbjct: 79 ICLHGAPWQEAAGQRFGVARSSGCIRIPSPH--ARWLFENTPIGTPVTIQA 127 >gi|284046860|ref|YP_003397200.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283951081|gb|ADB53825.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 199 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 + +H T P L + GC+R+RN+ L L TP Sbjct: 151 PAGGFVGIHGTDRPELV---PGRVSHGCIRLRNVDVVRLGRVLAVGTP 195 >gi|148692667|gb|EDL24614.1| matrix metallopeptidase 19, isoform CRA_b [Mus musculus] Length = 508 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L + L+ G L + F + A++ FQ GL SG +D +T M Sbjct: 5 ADSKDLEDYLLQYGYLQKPLEGADDFRLEDITEALRTFQEASGLPISGQMDDATRARMKQ 64 Query: 168 P 168 P Sbjct: 65 P 65 >gi|269126016|ref|YP_003299386.1| peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] gi|268310974|gb|ACY97348.1| Peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] Length = 366 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++ L + S + F + SAV +Q GL G+V +T + M+ Sbjct: 266 IQYFLYADNRMSRSS-IDCMFGSQTASAVASWQAARGLAADGIVGPNTRDRMD 317 >gi|196233249|ref|ZP_03132095.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] gi|196222720|gb|EDY17244.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] Length = 296 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 LR R I GD+D +E A+K +Q R GL SGM D TL ++ V Sbjct: 29 ELRRRNIYFGDIDGRAS------PELEQALKHYQKRKGLAVSGMNDHDTLRSLGV 77 >gi|296118710|ref|ZP_06837286.1| secreted lipoprotein ErfK/YbiS/YcfS/YnhG family protein [Corynebacterium ammoniagenes DSM 20306] gi|295968199|gb|EFG81448.1| secreted lipoprotein ErfK/YbiS/YcfS/YnhG family protein [Corynebacterium ammoniagenes DSM 20306] Length = 396 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 14/131 (10%) Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 LR P L + G+ + + + F + + G M + + Sbjct: 262 LRSIPVSLGKDGGRWATPNGRYMIGDSHETLLMNSETFGYSIEDGGYKTMVNYATQMSYS 321 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 Y+H P ++ + GC+ V + W + +T ++ T T Sbjct: 322 -GIYVHGAPW-SVWAQGNTNTSHGCINVT--EEAAQWFMNNTKRGDIVEVKNT--TGGT- 374 Query: 379 PVKLATEVPVH 389 +PV+ Sbjct: 375 -------LPVY 378 >gi|194207129|ref|XP_001495153.2| PREDICTED: matrix metalloproteinase 14 [Equus caballus] Length = 756 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 8/99 (8%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRH 149 G W R G ++ L L G L P + + +A+ Q + Sbjct: 189 GPWRR-GSRRWRPGCGTLHKALLAW-LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFY 246 Query: 150 GLDPSGMVDSSTLEAMNVP----VDLRIRQLQVNLMRIK 184 GL +G D+ T++AM P D +++ N+ R + Sbjct: 247 GLQVTGKADADTMKAMRRPRCGVPDKFGAEIKANVRRKR 285 >gi|122891389|emb|CAM14162.1| novel protein similar to vertebrate matrix metallopeptidase 16 (membrane-inserted) (MMP16) [Danio rerio] Length = 580 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 118 LIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + SA+ Q ++GL+ +G ++ T++ M P Q Sbjct: 5 LQKYGYLHPTPPNMAAQRSAQTMHSAIAAMQHKYGLNITGTLNKYTIDWMKKPRCGVPDQ 64 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNI 200 L+ +K G ++ +I Sbjct: 65 LKAGSASRRKKRYALTGQKWQREHI 89 >gi|172060521|ref|YP_001808173.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Burkholderia ambifaria MC40-6] gi|171993038|gb|ACB63957.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Burkholderia ambifaria MC40-6] Length = 289 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 10/79 (12%) Query: 89 LSRGGWPELPIRPLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 G WP+ LG+ V+ L+ +L G DA Sbjct: 189 AGVGAWPDDATVAARLGDRDPHALVDVRELQLKLARYGY---DVPTDGVLDARTRRVFAA 245 Query: 145 FQMRHGLDPS--GMVDSST 161 FQ H G D+ T Sbjct: 246 FQ-MHFRPSDYAGNPDAET 263 >gi|323140901|ref|ZP_08075814.1| ErfK/YbiS/YcfS/YnhG [Phascolarctobacterium sp. YIT 12067] gi|322414639|gb|EFY05445.1| ErfK/YbiS/YcfS/YnhG [Phascolarctobacterium sp. YIT 12067] Length = 197 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%) Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 +H T +P + GC+R+RN Sbjct: 146 GIGIHGTHDPASIGT---MASEGCIRLRNAD 173 >gi|297692149|ref|XP_002823430.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-19-like [Pongo abelii] Length = 507 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER-----LIISGDLDPSKGLSVAFDAY-VESAVKLFQM 147 W +L + L S V L E L G L S F + A++ FQ Sbjct: 3 WQQLWLGFLLPMTVSGRVLGLAEVAAVDYLSQYGYLQKPLEGSNNFKPEDITEALRAFQE 62 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 L SG +D +T M P Sbjct: 63 ASELPASGQLDDATRARMRQP 83 >gi|299821718|ref|ZP_07053606.1| carboxy-terminal processing protease [Listeria grayi DSM 20601] gi|299817383|gb|EFI84619.1| carboxy-terminal processing protease [Listeria grayi DSM 20601] Length = 487 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P L + V+ + L G + +D + AV FQ + L+ Sbjct: 399 PKNTYQLNDFGKEVKNIETYLKALGF--NVGKVDGLYDLDTQYAVSRFQAENDLEQ 452 >gi|148692668|gb|EDL24615.1| matrix metallopeptidase 19, isoform CRA_c [Mus musculus] Length = 378 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L + L+ G L + F + A++ FQ GL SG +D +T M Sbjct: 5 ADSKDLEDYLLQYGYLQKPLEGADDFRLEDITEALRTFQEASGLPISGQMDDATRARMKQ 64 Query: 168 P 168 P Sbjct: 65 P 65 >gi|85704443|ref|ZP_01035545.1| peptidoglycan binding domain protein [Roseovarius sp. 217] gi|85670851|gb|EAQ25710.1| peptidoglycan binding domain protein [Roseovarius sp. 217] Length = 405 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 7/78 (8%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +G WP PL ++ RL G + + +A++ FQ G Sbjct: 335 QGAWPR-GYNPLSFDER----MEMQRRLQRKGF--GIEKIDGIIGPNTVNAIRAFQQSVG 387 Query: 151 LDPSGMVDSSTLEAMNVP 168 P G+ L + Sbjct: 388 ATPDGLPSQELLALLKRS 405 >gi|163761460|ref|ZP_02168533.1| hypothetical protein HPDFL43_11221 [Hoeflea phototrophica DFL-43] gi|162281304|gb|EDQ31602.1| hypothetical protein HPDFL43_11221 [Hoeflea phototrophica DFL-43] Length = 1164 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 33 ASVLDEIINES-YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 DEI+ + + D ++ I +TI + + + +R Sbjct: 270 PERADEIVRLREQEARLEASADALEQQLVRLDQELGGIGIDDTILSMRDRLTELETLQAR 329 Query: 92 GGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 ++P L LG+S+ + +L LI G D + FDA +A+ Sbjct: 330 HATALEDVPKLRLTLGDSNAEIGQL---LIRLGRRDQPDAEDLLFDAATTAAL 379 >gi|114647860|ref|XP_509485.2| PREDICTED: matrix metalloproteinase-17 [Pan troglodytes] Length = 604 Score = 39.6 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 56 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 115 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 116 PVLTQARRRRQAPAP 130 >gi|291444959|ref|ZP_06584349.1| membrane protein [Streptomyces roseosporus NRRL 15998] gi|291347906|gb|EFE74810.1| membrane protein [Streptomyces roseosporus NRRL 15998] Length = 377 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 9/86 (10%) Query: 89 LSRGGWP----ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAV 142 GG P P G S+ V RL ++L+ G G S + V Sbjct: 290 AGAGGSPNTAVAFPGRGYFKPGQSNSHVDRLGKQLVKKGYGKHYVSGPSPLWTEADRRNV 349 Query: 143 KLFQMRHG---LDPSGMVDSSTLEAM 165 + FQ G G T + Sbjct: 350 EAFQRAQGWRGGAADGYPGPETWRRL 375 >gi|55742210|ref|NP_001006843.1| matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) [Xenopus (Silurana) tropicalis] gi|49899913|gb|AAH76927.1| matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) [Xenopus (Silurana) tropicalis] Length = 670 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Query: 112 QRLRER-LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L ER L+ G + +G +V +++A+ L Q + GL +G++D+ TLEAM P Sbjct: 43 AELAERYLLQFGYMTQEQGSNVT----LKNALTLMQQKLGLTRTGVLDTETLEAMRRP 96 >gi|332560848|ref|ZP_08415166.1| membrane-bound lytic murein transglycosylase B [Rhodobacter sphaeroides WS8N] gi|332274646|gb|EGJ19962.1| membrane-bound lytic murein transglycosylase B [Rhodobacter sphaeroides WS8N] Length = 413 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G + Q+L+ RL +G + G + E+A+ ++ +GL +G Sbjct: 353 GMTKADRQKLQRRLTSAGY--DTGGTDGVVGSKTEAAISAYEAANGLPVTG 401 >gi|171914302|ref|ZP_02929772.1| hypothetical protein VspiD_24025 [Verrucomicrobium spinosum DSM 4136] Length = 385 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 14/124 (11%) Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK----IEFYSRNN----TYM 323 ++ + G+ V V + + PG+ + +E ++N Y+ Sbjct: 83 EIVAKIGQGVKPGSVFKSRQLTGEVLKPDAPGRDPIVTRIMWLRGMESQNKNAYGRCIYI 142 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 H T E + GC+R+ D+ + + + +E + + Sbjct: 143 HGTAEERNIGKP---VSYGCIRM-KSRDVMDVFDRTSIGSNVLVVEGKLPGHVPA--AMP 196 Query: 384 TEVP 387 + +P Sbjct: 197 SPLP 200 >gi|147901642|ref|NP_001091305.1| matrix metalloproteinase-9TH [Xenopus laevis] gi|119709546|dbj|BAF42673.1| matrix metalloproteinase-9TH [Xenopus laevis] Length = 683 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +SV V L+ G L +G + ++ A+ Q + GL +G +D Sbjct: 33 PGEIRKNMTSVEVAE--WYLVKFGYLPLQQGSNHH--VSLKKALSQMQSKLGLKVTGNLD 88 Query: 159 SSTLEAMNVP 168 + TL+AM P Sbjct: 89 AETLDAMKTP 98 >gi|213024055|ref|ZP_03338502.1| LysM domain-containing protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 150 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 +H T P +SGC+R+ L + TP Sbjct: 7 YLIHGTSAPDSVG---LRVSSGCIRMNAPDIKALFAQVRTGTP 46 >gi|300794469|ref|NP_001178363.1| matrix metallopeptidase 15 (membrane-inserted) [Bos taurus] gi|297485306|ref|XP_002694844.1| PREDICTED: matrix metallopeptidase 15 (membrane-inserted) [Bos taurus] gi|296478084|gb|DAA20199.1| matrix metallopeptidase 15 (membrane-inserted) [Bos taurus] Length = 675 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIK 184 +++ NL R + Sbjct: 117 FGVRVKANLRRRR 129 >gi|119386314|ref|YP_917369.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119376909|gb|ABL71673.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 264 Score = 39.6 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 14/61 (22%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + + +R L+++G V+ FQ GL G+ TL A Sbjct: 173 GMADRQARYVRAALVLAGYGATE--------------VRRFQKEAGLTADGIAGPKTLAA 218 Query: 165 M 165 + Sbjct: 219 L 219 >gi|190892606|ref|YP_001979148.1| membrane-bound lytic murein transglycosylase [Rhizobium etli CIAT 652] gi|190697885|gb|ACE91970.1| probable membrane-bound lytic murein transglycosylase protein [Rhizobium etli CIAT 652] Length = 406 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G ++ ++ L+ +L G + + A++ Q R G+ Sbjct: 336 GAPTYLKGAPEPGLANDQMKTLQTKLQSLGH--DVGEIDGILGSGTRIAIQKEQQRLGIP 393 Query: 153 PSGMVDSSTLEAM 165 G + L A+ Sbjct: 394 ADGWATPALLNAL 406 >gi|416552|emb|CAA46638.1| hatching enzyme [Paracentrotus lividus] Length = 587 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + G +V+ L+ L G P A + SA+ FQ G++ +G+ Sbjct: 87 ISGVVVEEGVHESNVEILKAHLEKFGYTPPGSTFGEA-NLNYTSAILDFQEHGGINQTGI 145 Query: 157 VDSSTLEAMNVP 168 +D+ T E ++ P Sbjct: 146 LDADTAELLSTP 157 >gi|47228071|emb|CAF97700.1| unnamed protein product [Tetraodon nigroviridis] Length = 549 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P S+ + SA+ Q +GL +G +D ST++AM P D Sbjct: 5 LQQYGYLPPGDMRTHSLRSPHSITSAIAAMQRFYGLTVTGAIDDSTIQAMKRPRCGVPDK 64 Query: 172 RIRQLQVNLMRIK 184 +L+ NL R + Sbjct: 65 FGAELKSNLRRKR 77 >gi|222084816|ref|YP_002543345.1| hemagglutinin protein [Agrobacterium radiobacter K84] gi|221722264|gb|ACM25420.1| hemagglutinin protein [Agrobacterium radiobacter K84] Length = 1225 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ ++ L +G + + +A+K FQ GL G V ++ + Sbjct: 1167 AIRNIQAILNNNGF--DAGAPDGSMGEKTVAALKSFQKSVGLPQDGKVTDKLVKEL 1220 >gi|241205579|ref|YP_002976675.1| lytic murein transglycosylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859469|gb|ACS57136.1| lytic murein transglycosylase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 405 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 13/147 (8%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 +G+ + L+ + + F + ++ +K I T Sbjct: 272 WFALGVKPRDGNTAFGNLEGDLVLPQGR-MGPAF-IAYPNFKIYLE-----WNKSFIYTT 324 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 A Y G P L P G +S ++ L+ +L G + + Sbjct: 325 SAA---YFGTRLSGAEPYLKGVP-EQGLASDQMKALQTKLQSLGH--DVGEIDGILGSGT 378 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A++ Q R G+ G + L A+ Sbjct: 379 RVAIQKEQQRLGMPADGWATPALLNAL 405 >gi|108762529|ref|YP_633600.1| peptidoglycan binding domain-containing protein [Myxococcus xanthus DK 1622] gi|108466409|gb|ABF91594.1| peptidoglycan binding domain protein [Myxococcus xanthus DK 1622] Length = 325 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L+ERL G G F AV+ FQ GL SG D +T A+ Sbjct: 270 LQERLENLGF--SCGGERGQFGPKTRLAVEWFQYALGLPLSGEADEATCAALG 320 >gi|260553796|ref|ZP_05826066.1| transglycolase [Acinetobacter sp. RUH2624] gi|260405100|gb|EEW98600.1| transglycolase [Acinetobacter sp. RUH2624] Length = 432 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 40/141 (28%), Gaps = 14/141 (9%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIP--IISKETIAQTEKAIAFYQDILSRGG-----W 94 S A + + I S AIA D L G W Sbjct: 299 ALSGSTPAGLMAPAGASGPIFLVFKNFDAIYSYNAAESYGLAIAHLSDRLKGGKPFIASW 358 Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P G S + +++ LI G + A++ Q R GL+P+ Sbjct: 359 PTDD-----PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPT 411 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G L A ++ Q Sbjct: 412 GRAGQQILRAFRQEQARKMMQ 432 >gi|99082426|ref|YP_614580.1| lytic murein transglycosylase [Ruegeria sp. TM1040] gi|99038706|gb|ABF65318.1| Lytic murein transglycosylase [Ruegeria sp. TM1040] Length = 398 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S ++ L+ RL G + A AV+ Q+R G+ + L A Sbjct: 340 GLSGDQMKELQRRLQARGH--DVGDVDGILGANTRLAVQKEQLRLGMPADAWPTPALLNA 397 Query: 165 M 165 + Sbjct: 398 L 398 >gi|218661403|ref|ZP_03517333.1| probable membrane-bound lytic murein transglycosylase protein [Rhizobium etli IE4771] Length = 300 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 11/85 (12%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I GG WP P L + L+ RL G + + F + ++A+ Sbjct: 223 QIAGYGGMQQRWPR-PDGALDI----TEKFELQTRLKTLGYY--NGEVDGNFGSGSKAAI 275 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 Q R G+ P G L A+ Sbjct: 276 SAVQERIGMQPDGEPSLPLLNALRR 300 >gi|196233386|ref|ZP_03132230.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196222526|gb|EDY17052.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 149 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 5/49 (10%) Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTW 363 Y+H T + GCVR+ N +IDL + T Sbjct: 101 HDRYIYIHGTNAESRLGIP---ASFGCVRMNNLDVIDLYDRVPAGTTVE 146 >gi|73808271|ref|NP_001027449.1| putative MMP28 gene product isoform 3 precursor [Homo sapiens] gi|332847988|ref|XP_003315565.1| PREDICTED: matrix metalloproteinase-28-like [Pan troglodytes] gi|15079976|gb|AAH11774.1| Matrix metallopeptidase 28 [Homo sapiens] Length = 130 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|260435447|ref|ZP_05789417.1| ErfK/YbiS/YcfS/YnhG family protein [Synechococcus sp. WH 8109] gi|260413321|gb|EEX06617.1| ErfK/YbiS/YcfS/YnhG family protein [Synechococcus sp. WH 8109] Length = 137 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 12/84 (14%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY-SRNNT-YMHDTPEPILFNNV 335 +V V R G + + + F+ + +H T P Sbjct: 51 NNKVNPTYV--THKSGQRLELR---GPSSPIGDRYMAFHRNGRGEFGIHGTAWPQWVQI- 104 Query: 336 VRFETS-GCVRV--RNIIDLDVWL 356 R TS GCVR+ R+I L + Sbjct: 105 -RAATSLGCVRMLNRHIRQLFDAV 127 >gi|190893390|ref|YP_001979932.1| membrane-bound lytic murein transglycosylase [Rhizobium etli CIAT 652] gi|190698669|gb|ACE92754.1| probable membrane-bound lytic murein transglycosylase protein [Rhizobium etli CIAT 652] gi|327189616|gb|EGE56766.1| putative membrane-bound lytic murein transglycosylase protein [Rhizobium etli CNPAF512] Length = 407 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 11/85 (12%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I GG WP P L + L+ RL G + + F + ++A+ Sbjct: 330 QIAGYGGMQQRWPR-PDGALDI----TEKFELQTRLKTLGYY--NGEVDGNFGSGSKAAI 382 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 Q R G+ P G L A+ Sbjct: 383 SAVQERIGMQPDGEPSLPLLNALRR 407 >gi|163746382|ref|ZP_02153740.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] gi|161380267|gb|EDQ04678.1| ErfK/YbiS/YcfS/YnhG family protein [Oceanibulbus indolifex HEL-45] Length = 166 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 17/136 (12%) Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM-----IDEKGKEVFV 283 P ++ F YW +P ++ + + + R P + ++ Sbjct: 22 PPYEIHVDPDNFALYWTLPDNMAWRYTVGVGR--PGLYESGEFYVGAKKEWPSWTPT--P 77 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMAST-KIEFYSRNN---TYMHDTPEPILFNNVVRFE 339 + +D + + + G N + S F +H T +P Sbjct: 78 DMIDREPEKYAKYSDGMEGGLNNPLGSRGLYLFTEERGDTFLRIHGTDDPSTLGKR---V 134 Query: 340 TSGCVRVRNIIDLDVW 355 ++GC R+ N + Sbjct: 135 SNGCARLVN-DQMAEL 149 >gi|109128713|ref|XP_001101050.1| PREDICTED: matrix metalloproteinase-15 [Macaca mulatta] Length = 669 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T E M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIK 184 +++ NL R + Sbjct: 117 FGVRVKANLRRRR 129 >gi|109097139|ref|XP_001111542.1| PREDICTED: matrix metalloproteinase-19 isoform 1 [Macaca mulatta] Length = 485 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE-----RLIISGDLDPSKGLSVAFDAY-VESAVKLFQM 147 W +L + L S V L E L G L S F + A++ FQ Sbjct: 3 WQQLWLGFLLPMTVSGRVLGLAEEMAVEYLSQYGYLQKPLEGSNNFKPEDITEALRAFQE 62 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 L SG +D +T M P Sbjct: 63 ASELPVSGQLDDATRARMKQP 83 >gi|157375810|ref|YP_001474410.1| lytic murein transglycosylase [Shewanella sediminis HAW-EB3] gi|157318184|gb|ABV37282.1| lytic murein transglycosylase [Shewanella sediminis HAW-EB3] Length = 377 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ L+ +L G ++ ++ FQ+ GL G +T +A+ V Sbjct: 320 ARVKSLQAKLNEKGF--DVGKPDGVMGRNSKTGLRAFQLSVGLVADGFPSEATFKALGV 376 >gi|146300912|ref|YP_001195503.1| peptidoglycan binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146155330|gb|ABQ06184.1| Peptidoglycan-binding domain 1 protein [Flavobacterium johnsoniae UW101] Length = 272 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRIK 184 + + F E AV FQ +G +G VD + + + P+ + N +R Sbjct: 47 TATDIDGDFGPATEKAVLNFQKANGQPQTGNVDQNLFDKLVSPLKKAFESPISGNNLREL 106 Query: 185 KLLEQK 190 L + Sbjct: 107 ILNTAQ 112 >gi|95930333|ref|ZP_01313070.1| Peptidoglycan-binding domain 1 [Desulfuromonas acetoxidans DSM 684] gi|95133585|gb|EAT15247.1| Peptidoglycan-binding domain 1 [Desulfuromonas acetoxidans DSM 684] Length = 552 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 2/71 (2%) Query: 94 WPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W + V L ++L +P ++ + + ++ FQ GL Sbjct: 462 WQPPSAYSGAVPPDEEGPMVLWLEQQLAHLMQREPRPDATLRLNGLLLDELQQFQQSEGL 521 Query: 152 DPSGMVDSSTL 162 G++ TL Sbjct: 522 AADGIIGPITL 532 >gi|227553484|ref|ZP_03983533.1| conserved hypothetical protein [Enterococcus faecalis HH22] gi|227177395|gb|EEI58367.1| conserved hypothetical protein [Enterococcus faecalis HH22] Length = 78 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 +Q L L + P + + A ++AV Q ++GL +G +D+ T + + Sbjct: 1 IQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDNETATKIEATLG 58 Query: 171 LRI 173 I Sbjct: 59 KLI 61 >gi|86359153|ref|YP_471045.1| membrane-bound lytic murein transglycosylase protein [Rhizobium etli CFN 42] gi|86283255|gb|ABC92318.1| probable membrane-bound lytic murein transglycosylase protein [Rhizobium etli CFN 42] Length = 407 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 11/85 (12%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I GG WP P L + L+ RL G + + F + ++A+ Sbjct: 330 QIAGYGGMQQRWPR-PDGALDI----TEKFELQTRLKTLGYY--NGEVDGNFGSGSKAAI 382 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 Q R G+ P G L A+ Sbjct: 383 SAVQERIGMQPDGEPSLPLLNALRR 407 >gi|325918692|ref|ZP_08180790.1| lytic murein transglycosylase [Xanthomonas vesicatoria ATCC 35937] gi|325535084|gb|EGD06982.1| lytic murein transglycosylase [Xanthomonas vesicatoria ATCC 35937] Length = 423 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++ L++RL G G+ A ++ FQ GL +S L + Sbjct: 366 DAITELQQRLADKGF--DVGGVDGALGPQTRQGIRAFQRSQGLPQDAYASTSLLARVR 421 >gi|322831069|ref|YP_004211096.1| Peptidoglycan-binding domain 1 protein [Rahnella sp. Y9602] gi|321166270|gb|ADW71969.1| Peptidoglycan-binding domain 1 protein [Rahnella sp. Y9602] Length = 510 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 17/34 (50%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +D + VKLFQ R GL G V TL Sbjct: 458 GKTGQWDKDLIRKVKLFQQREGLIVDGRVGKGTL 491 >gi|86356208|ref|YP_468100.1| putative hemagglutinin protein [Rhizobium etli CFN 42] gi|86280310|gb|ABC89373.1| putative hemagglutinin protein [Rhizobium etli CFN 42] Length = 1249 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 +++ ++ L +G + A +A+K FQ G P G V +T++A+ Sbjct: 1185 AIRNIQAILNNNGF--DAGVPDGEMGAKTVAAIKSFQKSIGQAPDGKVTDATVKALLERN 1242 Query: 170 DLRIRQL 176 + + Sbjct: 1243 KQVAKAI 1249 >gi|17986844|ref|NP_539478.1| membrane-bound lytic murein transglycosylase B [Brucella melitensis bv. 1 str. 16M] gi|17982480|gb|AAL51742.1| membrane-bound lytic murein transglycosylase b [Brucella melitensis bv. 1 str. 16M] Length = 398 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 328 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 385 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 386 ADSWPTQELLDRL 398 >gi|10946772|ref|NP_067387.1| matrix metalloproteinase-19 isoform 1 [Mus musculus] gi|12585271|sp|Q9JHI0|MMP19_MOUSE RecName: Full=Matrix metalloproteinase-19; Short=MMP-19; AltName: Full=Matrix metalloproteinase RASI; Flags: Precursor gi|8132443|gb|AAF73292.1|AF155221_1 matrix metalloproteinase 19 [Mus musculus] gi|11095502|gb|AAG29880.1|AF153199_1 matrix metalloproteinase 19 [Mus musculus] gi|8886433|gb|AAF80464.1| matrix metalloproteinase-19 [Mus musculus] gi|86577774|gb|AAI12967.1| Matrix metallopeptidase 19 [Mus musculus] gi|148692666|gb|EDL24613.1| matrix metallopeptidase 19, isoform CRA_a [Mus musculus] Length = 527 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L + F + A++ FQ GL SG +D +T M P Sbjct: 33 LLQYGYLQKPLEGADDFRLEDITEALRTFQEASGLPISGQMDDATRARMKQP 84 >gi|332227957|ref|XP_003263157.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-15-like [Nomascus leucogenys] Length = 753 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T E M P D Sbjct: 141 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 200 Query: 172 RIRQLQVNLMRIK 184 +++ NL R + Sbjct: 201 FGVRVKANLRRRR 213 >gi|319408241|emb|CBI81894.1| Peptidoglycan binding domain protein [Bartonella schoenbuchensis R1] Length = 286 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + R+++ L + G + ++ D A+K FQ L +G +D Sbjct: 220 LKPLVTD--IIRVQKALRMFG--NQEVTITGIEDEKTMRALKQFQKIFNLPITGKIDREV 275 Query: 162 L 162 L Sbjct: 276 L 276 >gi|242067763|ref|XP_002449158.1| hypothetical protein SORBIDRAFT_05g005860 [Sorghum bicolor] gi|241935001|gb|EES08146.1| hypothetical protein SORBIDRAFT_05g005860 [Sorghum bicolor] Length = 985 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 48/192 (25%), Gaps = 20/192 (10%) Query: 158 DSSTLEAMNVPV--DLRIRQLQVNLM-RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 S T + ++ R ++ ++ L + +++ A +EA E Sbjct: 20 GSDTYRSPSISPRESPRAKKARLELEHDPTYEPQADPDDDEEVLSQVVAKMEAEEQDVQK 79 Query: 215 LRSTVIVG---------------RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 + G R DR + +I+ P + + + + Sbjct: 80 DTAPQTTGTSSEPRSKTKKSDRARGDRGRNRFTEEVYQIIELSPSGEPLAPL--EALPKF 137 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 R YL + V + D A + Sbjct: 138 RAAIGYLVKEEFDITWSDWSMVPQVKRTTCWNRLCTRFIFSDGTDDLAKGYVMKQLAISF 197 Query: 320 NTYMHDTPEPIL 331 Y HD + L Sbjct: 198 WGYRHDMNKKWL 209 >gi|123090|sp|P22757|HE_PARLI RecName: Full=Hatching enzyme; Short=HE; Short=HEZ; AltName: Full=Envelysin; AltName: Full=Sea-urchin-hatching proteinase; Contains: RecName: Full=Hatching enzyme 18 kDa form; Flags: Precursor gi|9996|emb|CAA37667.1| pre-pro-hatching enzyme [Paracentrotus lividus] Length = 587 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + G +V+ L+ L G P A + SA+ FQ G++ +G+ Sbjct: 87 ISGVVVEEGVHESNVEILKAHLEKFGYTPPGSTFGEA-NLNYTSAILDFQEHGGINQTGI 145 Query: 157 VDSSTLEAMNVP 168 +D+ T E ++ P Sbjct: 146 LDADTAELLSTP 157 >gi|307546096|ref|YP_003898575.1| lytic murein transglycosylase [Halomonas elongata DSM 2581] gi|307218120|emb|CBV43390.1| lytic murein transglycosylase [Halomonas elongata DSM 2581] Length = 433 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 9/105 (8%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 + + +A AIA I +G WP L V+ +++ L G Sbjct: 338 LRYNNATSYALAVATLSDAIAGRAGI--QGEWPR-EQPALKR----SEVREMQQLLDARG 390 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ FQ G+ P G + LE + Sbjct: 391 F--DVGTPDGILGPNTRRGLRAFQREIGVTPDGFATKALLERLRR 433 >gi|301762074|ref|XP_002916480.1| PREDICTED: matrix metalloproteinase-24-like [Ailuropoda melanoleuca] Length = 630 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L PS + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 65 RLANWLKSYGYLLPSDSRAPALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 122 >gi|295104835|emb|CBL02379.1| Uncharacterized protein conserved in bacteria [Faecalibacterium prausnitzii SL3/3] Length = 215 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G S +V L+ L + + F A ++ + +Q HGL G+ +T Sbjct: 162 IGGVSYAVTVLQRHLGL--------NVDGIFGAGTKAKLVEWQKAHGLAADGICGMATWS 213 Query: 164 AM 165 + Sbjct: 214 SF 215 >gi|227497825|ref|ZP_03928010.1| peptidoglycan-binding domain protein [Actinomyces urogenitalis DSM 15434] gi|226832747|gb|EEH65130.1| peptidoglycan-binding domain protein [Actinomyces urogenitalis DSM 15434] Length = 373 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + +L L G + FD AV +Q +GL +G + Sbjct: 139 GEDIHQLETALKELGFFEDEP--DNCFDWVTRKAVVAWQKANGLRQTGTI 186 >gi|116250359|ref|YP_766197.1| peptidoglycan binding protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255007|emb|CAK06081.1| putative peptidoglycan binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1267 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ ++ L +G + A +A+K FQ G +P G V +T++A+ Sbjct: 1203 AIRNIQAILNNNGF--DAGVPDGEMGAKTVTAIKNFQKSVGQEPDGKVTDATVKAL 1256 >gi|157130899|ref|XP_001662053.1| matrix metalloproteinase [Aedes aegypti] gi|108881895|gb|EAT46120.1| matrix metalloproteinase [Aedes aegypti] Length = 474 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 118 LIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 L G L + D +A+K Q R+ L +G++D T + P R Sbjct: 54 LKDLGYLSADDVVNRLDQTTDEIGRNALKRLQRRYNLTDNGLLDDDTRRLIAAP---RCG 110 Query: 175 QLQVNLMRIKK 185 ++N + K Sbjct: 111 VAELNEIEEKW 121 >gi|256831718|ref|YP_003160445.1| Peptidoglycan-binding domain 1 protein [Jonesia denitrificans DSM 20603] gi|256685249|gb|ACV08142.1| Peptidoglycan-binding domain 1 protein [Jonesia denitrificans DSM 20603] Length = 471 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 L G+S V+ L++ L G + + + +AV+ G Sbjct: 161 LAPGDSGHDVKALQQELARLGHYH--GAIDGDYGPGMAAAVRELYRSSG 207 >gi|332254133|ref|XP_003276184.1| PREDICTED: matrix metalloproteinase-17 [Nomascus leucogenys] Length = 607 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 56 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 115 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 116 PVLTQARRRRQAPAP 130 >gi|21221285|ref|NP_627064.1| membrane protein [Streptomyces coelicolor A3(2)] gi|6689168|emb|CAB65565.1| putative membrane protein [Streptomyces coelicolor A3(2)] Length = 353 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 33/149 (22%), Gaps = 12/149 (8%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLA---RVDMGIDSDIPIISKETIAQTEKAIAFY 85 + D A + ++ +A+ A Sbjct: 203 GGWTDGTRTAYTAYEQTPPHTRKLDTPYAYWSNSAQYLPYRYKGVAAGDVAKAGAAGTEE 262 Query: 86 QDILSRGGWPE-LPIRP----LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVE 139 + G + P G + V RL +L+ G G + Sbjct: 263 APPGAAGPASHGVAGYPGRAMFRPGADNPYVTRLGRQLVRKGFGTYYTRGPGPRWGEADR 322 Query: 140 SAVKLFQMRHG---LDPSGMVDSSTLEAM 165 V+ FQ G G T + Sbjct: 323 RGVQAFQRAQGWRGGAADGYPGPETWRRL 351 >gi|301176641|ref|NP_001180379.1| matrix metalloproteinase 1 [Nasonia vitripennis] Length = 555 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + ++ A+ FQ GL+ +G++D+ T M++P Sbjct: 47 LSQYGYLPPLNPTNGGLVSEQTMQRAIAEFQSFAGLNITGVLDTDTAALMSMP 99 >gi|218671487|ref|ZP_03521157.1| hypothetical protein RetlG_07418 [Rhizobium etli GR56] Length = 63 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Query: 306 NAMASTKIE-FYSR-NNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 N + + + F + + Y +H P+ +SGCVR+ ++IIDL + Sbjct: 1 NPLGARALYIFSNGEDTLYRLHGNPDWRSIGK---AVSSGCVRLLNQDIIDLYDRVPTKA 57 Query: 361 P 361 P Sbjct: 58 P 58 >gi|237737468|ref|ZP_04567949.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229421330|gb|EEO36377.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 124 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 6/41 (14%) Query: 129 GLSVAFDAYV------ESAVKLFQMRHGLDPSGMVDSSTLE 163 + + E+A+K FQ + L P G+ T++ Sbjct: 75 KEDEIYTRLLWLGFSGENAIKNFQKANNLTPDGIAGPKTIK 115 >gi|195380117|ref|XP_002048817.1| GJ21109 [Drosophila virilis] gi|194143614|gb|EDW60010.1| GJ21109 [Drosophila virilis] Length = 587 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D + SA++ FQ GL+ +G +D T++ M++P Sbjct: 40 LSQFGYLPASARNPANSGLQDKHTWVSAIQEFQSFAGLNITGELDEETMKLMSLPRCGVR 99 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 100 DRVGTGDSRSKRYALQGSRWR 120 >gi|1514961|dbj|BAA11523.1| gelatinase-b [Cynops pyrrhogaster] Length = 679 Score = 39.2 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 38/189 (20%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G S + L G + S + A+ Q + GL+ +G +D Sbjct: 33 PGELVSGISDDELAE--SYLERFGYISKRARSSTH--VSLSKALLQMQKKLGLNETGELD 88 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 STLEAM P R + ++ +G + Sbjct: 89 QSTLEAMKTP-------------------------RCGVPDVGNFQTF---DGDLKWDHN 120 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 I RV +P L + F + + D+ L Y + +I ++ Sbjct: 121 DITFRVLNYSPDLDGDVIEDAFRRAFKV-----WSDVSP-LTFTQIYSGEADIMILFGSD 174 Query: 279 KEVFVEEVD 287 D Sbjct: 175 DHGDPYPFD 183 >gi|218508399|ref|ZP_03506277.1| probable membrane-bound lytic murein transglycosylase protein [Rhizobium etli Brasil 5] Length = 264 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 11/85 (12%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I GG WP P L + L+ RL G + + F + ++A+ Sbjct: 187 QIAGYGGMQQRWPR-PDGALDI----TEKFELQTRLKTLGYY--NGEVDGNFGSGSKAAI 239 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 Q R G+ P G L A+ Sbjct: 240 SAVQERIGMQPDGEPSLPLLNALRR 264 >gi|320326151|gb|EFW82207.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. glycinea str. B076] gi|320330685|gb|EFW86662.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. glycinea str. race 4] gi|330882645|gb|EGH16794.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. glycinea str. race 4] Length = 413 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G A ++A++ +Q L P G + LE++ Sbjct: 357 AQVTDLQKLLTAKGY--SLGTADGVIGAMTQAAIRAYQKDQHLPPDGYASTVLLESLRR 413 >gi|163844269|ref|YP_001621924.1| lytic murein transglycosylase [Brucella suis ATCC 23445] gi|163674992|gb|ABY39102.1| lytic murein transglycosylase [Brucella suis ATCC 23445] Length = 408 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D G + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGKIGATSR------AAIEAFQQRNGLEPDGHPSKEVLSVLRR 407 >gi|23499837|ref|NP_699277.1| transglycosylase [Brucella suis 1330] gi|161620160|ref|YP_001594046.1| lytic murein transglycosylase [Brucella canis ATCC 23365] gi|254702504|ref|ZP_05164332.1| lytic murein transglycosylase [Brucella suis bv. 3 str. 686] gi|260568590|ref|ZP_05839059.1| lytic murein transglycosylase [Brucella suis bv. 4 str. 40] gi|261753077|ref|ZP_05996786.1| lytic Murein transglycosylase [Brucella suis bv. 3 str. 686] gi|23463407|gb|AAN33282.1| transglycosylase, putative [Brucella suis 1330] gi|161336971|gb|ABX63275.1| lytic murein transglycosylase [Brucella canis ATCC 23365] gi|260155255|gb|EEW90336.1| lytic murein transglycosylase [Brucella suis bv. 4 str. 40] gi|261742830|gb|EEY30756.1| lytic Murein transglycosylase [Brucella suis bv. 3 str. 686] Length = 408 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L G D G + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGKIGATSR------AAIEAFQQRNGLEPDGHPSKEVLSVLRR 407 >gi|293611414|ref|ZP_06693710.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826286|gb|EFF84655.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 430 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 361 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 418 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 419 AFRQEQAQKMMQ 430 >gi|270004036|gb|EFA00484.1| hypothetical protein TcasGA2_TC003344 [Tribolium castaneum] Length = 423 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 12/92 (13%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--------PV 169 L G L+ + L A+ FQ + L G ++ TL +N P Sbjct: 36 LEKFGYLESNGPLIT----ETSEALIKFQEFYNLPADGTLNQETLALINTPRCGVRDNPT 91 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 R+ + + +K L Sbjct: 92 AYRVHTNKWSKTNLKWYFSLATNEMKELAQKA 123 >gi|50086598|ref|YP_048108.1| putative membrane-bound lytic murein transglycosylase [Acinetobacter sp. ADP1] gi|49532572|emb|CAG70286.1| putative membrane-bound lytic murein transglycosylase [Acinetobacter sp. ADP1] Length = 431 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 6/116 (5%) Query: 55 FLARVDMGIDSDIP--IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-LGNSSVSV 111 A + I S AIA D RG P + P G S Sbjct: 311 AGANGPAFLVFKNFDAIYSYNAAESYGLAIAHLSD-RLRGTGPFVTAWPTDDPGTSRAER 369 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + +++ L+ G + A++ Q R GL+P+G L A Sbjct: 370 REIQQFLLKRGY--DIGAVDGLIGDKTRQAIRQEQTRLGLNPTGRAGQQILRAFRQ 423 >gi|4505211|ref|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo sapiens] gi|1705988|sp|P51511|MMP15_HUMAN RecName: Full=Matrix metalloproteinase-15; Short=MMP-15; AltName: Full=Membrane-type matrix metalloproteinase 2; Short=MT-MMP 2; Short=MTMMP2; AltName: Full=Membrane-type-2 matrix metalloproteinase; Short=MT2-MMP; Short=MT2MMP; AltName: Full=SMCP-2; Flags: Precursor gi|963056|emb|CAA88373.1| membrane-type matrix metalloproteinase 2 [Homo sapiens] gi|33585869|gb|AAH55428.1| Matrix metallopeptidase 15 (membrane-inserted) [Homo sapiens] gi|54673588|gb|AAH36495.1| Matrix metallopeptidase 15 (membrane-inserted) [Homo sapiens] gi|116069818|gb|ABJ53423.1| matrix metallopeptidase 15 (membrane-inserted) [Homo sapiens] gi|119603371|gb|EAW82965.1| matrix metallopeptidase 15 (membrane-inserted), isoform CRA_a [Homo sapiens] gi|119603372|gb|EAW82966.1| matrix metallopeptidase 15 (membrane-inserted), isoform CRA_a [Homo sapiens] gi|261858710|dbj|BAI45877.1| matrix metallopeptidase 15 [synthetic construct] Length = 669 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T E M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIK 184 +++ NL R + Sbjct: 117 FGVRVKANLRRRR 129 >gi|15966907|ref|NP_387260.1| putative protease transmembrane protein [Sinorhizobium meliloti 1021] gi|15076180|emb|CAC47733.1| Serine protease [Sinorhizobium meliloti 1021] Length = 639 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVE--SAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V E + SG L D E +A+KLFQ GL +G +D +T + + Sbjct: 263 DEVAAFDEIMKESGLLSEGFETDT--DPATERKAALKLFQNELGLPETGELDEATKDELL 320 Query: 167 VPVDLR 172 P + R Sbjct: 321 DPREWR 326 >gi|297698857|ref|XP_002826519.1| PREDICTED: matrix metalloproteinase-15-like [Pongo abelii] Length = 669 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T E M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIK 184 +++ NL R + Sbjct: 117 FGVRVKANLRRRR 129 >gi|187735322|ref|YP_001877434.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] gi|187425374|gb|ACD04653.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] Length = 243 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 17/85 (20%) Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR-FETSGCVRVRNIIDLDVWLLKDTPT 362 + M + +H V R + GCVR+ ++ L + T Sbjct: 163 DGSPM-PYWQRLTNA-GLGLH-------VGKVRRHPVSHGCVRL--PRNVAEILYRQTSI 211 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVP 387 + I++ PV A ++P Sbjct: 212 GTPVTIQKT-----PLPVPEAQKIP 231 >gi|239750339|ref|XP_002347374.1| PREDICTED: matrix metalloproteinase-19-like [Homo sapiens] Length = 183 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F + A++ FQ L SG +D +T M P Sbjct: 32 LSQYGYLQKPLEGSNNFKPEDITEALRAFQEASELPVSGQLDDATRARMRQP 83 >gi|119617251|gb|EAW96845.1| matrix metallopeptidase 19, isoform CRA_b [Homo sapiens] Length = 173 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F + A++ FQ L SG +D +T M P Sbjct: 32 LSQYGYLQKPLEGSNNFKPEDITEALRAFQEASELPVSGQLDDATRARMRQP 83 >gi|304360975|ref|YP_003857157.1| gp26 [Mycobacterium phage LeBron] gi|302858244|gb|ADL70993.1| gp26 [Mycobacterium phage LeBron] Length = 343 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 10/99 (10%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG----------LDP 153 G+S V RE+L L+ +DA + + FQ+R L Sbjct: 14 PGDSGTQVLAAREKLKAKFSYGKHLKLTTLYDAELLPVLVEFQLRTNVQRALTGKQLLRV 73 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 G++D +T A+ + + + + + Sbjct: 74 DGILDYATQVALGIVAPPAVVKPLLFTVHGTGQPVPDGP 112 >gi|304312079|ref|YP_003811677.1| Putative peptidoglycan-binding protein [gamma proteobacterium HdN1] gi|301797812|emb|CBL46034.1| Putative peptidoglycan-binding protein [gamma proteobacterium HdN1] Length = 444 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ L+ L G + + +A++ FQ G+ G A+ V Sbjct: 383 AKVKALQAALNAKGF--DAGVPDGIAGSGTRAAIRAFQKSLGMIADGYPSPDVFRALGV 439 >gi|294814200|ref|ZP_06772843.1| Peptidoglycan-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326442595|ref|ZP_08217329.1| Peptidoglycan-binding domain 1 protein [Streptomyces clavuligerus ATCC 27064] gi|294326799|gb|EFG08442.1| Peptidoglycan-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 470 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + V++ L G + +F AV+ +Q GL +G V Sbjct: 229 RGLDVKQFETNLSALGY--TGFTVDDSFTELTARAVRAWQRDLGLPRTGRVG 278 >gi|296817711|ref|XP_002849192.1| ABC protein [Arthroderma otae CBS 113480] gi|238839645|gb|EEQ29307.1| ABC protein [Arthroderma otae CBS 113480] Length = 1396 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 12/176 (6%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRE-------RLIISGDLDPSKGLSVAFDAYVESAV 142 GG + S S LR RL + + + +S + A + S + Sbjct: 33 GTGGGKAVDGDVGKEAAQSASKPSLRWYQRLNPIRLQQAPPVPSERTISKEYGAGLLS-I 91 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 FQ H L +G + L+ + V D + L L + G ++ L+ Sbjct: 92 ITFQWMHPLMLTGYLRPLQLQDIWLVNPDRSVEGLAARLE-ASFQKRIERGDKHPLLGAG 150 Query: 202 --AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 LE + + V+ T L S + +P I+ + Sbjct: 151 YETFKLEIWIGACCQMVACVLQVLTPYTTKYLISFATEAYIAQHKHVPGPHIRNGI 206 >gi|212212506|ref|YP_002303442.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii CbuG_Q212] gi|212010916|gb|ACJ18297.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii CbuG_Q212] Length = 160 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 33/172 (19%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-------RQTPILHSRINRIMFNPYWVI 246 Y+ V+IP +L + +V R V R +TP I + Sbjct: 3 TYLTVDIPRQTLTLFRDNQVIKRYRVSTARNGPGELINSEKTPRGWHIIRAKV---GEGC 59 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + + + LK ++ + + W S N Sbjct: 60 PPNTVFVERRPTGEVYSPALKRR------YPDRDWVLTRILWLSGLEVG---------KN 104 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + + R Y+H + + I+ + GC+R+ N II+L + Sbjct: 105 RLGNVDTM---RRYVYIHGSGDEIIMGKPG---SRGCIRMHNHDIIELFDEV 150 >gi|291299237|ref|YP_003510515.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568457|gb|ADD41422.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 198 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V + L G L + + F A K ++ GL +G V + + Sbjct: 74 VHLWQAILAADGYLT-DEQIDGYFGPATAKATKQWKADRGLTANGRVGNGSW 124 >gi|218516691|ref|ZP_03513531.1| probable membrane-bound lytic murein transglycosylase protein [Rhizobium etli 8C-3] Length = 77 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G ++ ++ L+ +L G + + A++ Q R G+ Sbjct: 7 GAPTYLKGAPEPGLANDQMKTLQTKLQSLGH--DVGEIDGILGSGTRIAIQKEQQRLGIP 64 Query: 153 PSGMVDSSTLEAM 165 G + L A+ Sbjct: 65 ADGWATPALLNAL 77 >gi|114567247|ref|YP_754401.1| C-terminal processing peptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338182|gb|ABI69030.1| C-terminal processing peptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 497 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + L SG + D +A+K FQ L PSG++D +T EA+N I Sbjct: 425 KILSASGY--ELDKPDMTLDIKTFNAIKKFQQEQRLYPSGILDFTTQEALNRKRQELINC 482 Query: 176 LQVNLMR 182 R Sbjct: 483 YDQQYAR 489 >gi|261222590|ref|ZP_05936871.1| LOW QUALITY PROTEIN: transglycolase [Brucella ceti B1/94] gi|265998555|ref|ZP_06111112.1| LOW QUALITY PROTEIN: transglycolase [Brucella ceti M490/95/1] gi|260921174|gb|EEX87827.1| LOW QUALITY PROTEIN: transglycolase [Brucella ceti B1/94] gi|262553179|gb|EEZ09013.1| LOW QUALITY PROTEIN: transglycolase [Brucella ceti M490/95/1] Length = 298 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 228 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 285 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 286 ADSWPTQELLDRL 298 >gi|260459247|ref|ZP_05807502.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259034801|gb|EEW36057.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 375 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 13/99 (13%) Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQ-----DPGKINAMASTKIEFYSRN---NTYM 323 + +E + + + Q G N + + I Y + + Sbjct: 275 TVAVGDKQEWPRWIPTLDMQKREPKHYAQYKDGMPGGGQNPLGARAIYLYDGKKDTHLRI 334 Query: 324 HDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDT 360 H T P ++GC R+ +++DL + T Sbjct: 335 HGTIAPQSIGTS---ASNGCFRMMNEHVMDLYSRVRVGT 370 >gi|262281539|ref|ZP_06059318.1| transglycosylase [Acinetobacter calcoaceticus RUH2202] gi|262256998|gb|EEY75737.1| transglycosylase [Acinetobacter calcoaceticus RUH2202] Length = 430 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 9/101 (8%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 IA + + + WP G S + +++ LI G + Sbjct: 339 IAHLSDRLKGARPFATS--WPTDD-----PGTSRAERREIQQFLINRGY--DIGAVDGLI 389 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 A++ Q R GL+P+G L A ++ Q Sbjct: 390 GDKTRVAIRQEQTRLGLNPTGRAGQQILRAFRQEQAKKMMQ 430 >gi|84514388|ref|ZP_01001752.1| hypothetical protein SKA53_09219 [Loktanella vestfoldensis SKA53] gi|84511439|gb|EAQ07892.1| hypothetical protein SKA53_09219 [Loktanella vestfoldensis SKA53] Length = 191 Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 23/189 (12%) Query: 169 VDLRIRQLQVNLMRI--KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 R L + +L + V NI A + + L VG + Sbjct: 9 PSRRALLLGATAATLFAPSILRAQTERPPVDRNIAAFRVHEWRDHFDSL----GVGAILA 64 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 T + F +W P ++ + L + +K Sbjct: 65 DTKSM--------FLQHWT-PDGDMR--IYPTSVPLSDDLTRTGFTEVIDKRVAPSWAPT 113 Query: 287 DWNSPEPPNFIFRQDPG-KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 P + G +N M S + + +H T + R ++GC+ Sbjct: 114 PAMRERNPEWPAFIPGGDPLNPMGSHALYLSWQF-YRIHGTQDTRKIG---RKSSNGCIG 169 Query: 346 VRNIIDLDV 354 + N + Sbjct: 170 LYN-EQIAE 177 >gi|311107456|ref|YP_003980309.1| peptidoglycan binding domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|310762145|gb|ADP17594.1| peptidoglycan binding domain protein 1 [Achromobacter xylosoxidans A8] Length = 549 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S ++ L+E L G + AV+ Q++ L G V + Sbjct: 473 PGLSRAQIKELQEMLYGLGH--DVGVADGIPGSKTRDAVREEQVKRKLPEDGRVGKRIYD 530 Query: 164 AMNVP 168 A+ Sbjct: 531 AIKAT 535 >gi|116332909|ref|YP_794436.1| periplasmic protease [Lactobacillus brevis ATCC 367] gi|116098256|gb|ABJ63405.1| Periplasmic protease [Lactobacillus brevis ATCC 367] Length = 344 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ AV+ FQ +H L +G VD T + P Sbjct: 147 NKYNTATYYAVRSFQKKHHLKVTGNVDEKTWVKLGFP 183 >gi|34784688|gb|AAH57745.1| Mmp9 protein [Xenopus laevis] Length = 671 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L +G + +++A+ + Q + GL +G++D+ TLEAM P Sbjct: 50 LLQFGYLIQEQGSNAT----LQNALTIMQQKLGLKETGVLDAETLEAMKRP 96 >gi|313109433|ref|ZP_07795393.1| hypothetical protein PA39016_001790033 [Pseudomonas aeruginosa 39016] gi|310881895|gb|EFQ40489.1| hypothetical protein PA39016_001790033 [Pseudomonas aeruginosa 39016] Length = 448 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP L PL + S + L+ +L G + A A++ Q G Sbjct: 379 GAWP-LEDVPL---SRSQRI-ELQRQLAARGH--DPGAVDGIIGANTRKAIRACQQEFGW 431 Query: 152 DPSGMVDSSTLEAMNVP 168 G + L+ + P Sbjct: 432 PADGYPTPALLDRLRTP 448 >gi|291300979|ref|YP_003512257.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290570199|gb|ADD43164.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 201 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +S + L + ++++ D +G+ F A + +Q +GL+P+G VD + Sbjct: 68 SSDTDLVTLWQAIMVAEDKLALEGMDGVFGTKTAEATEEWQEDNGLEPTGQVDKQSWA 125 >gi|328865825|gb|EGG14211.1| hypothetical protein DFA_11980 [Dictyostelium fasciculatum] Length = 286 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S V L+ L S P +S FD + E + +Q + + +G++D +T ++ Sbjct: 42 SGDDVIILQGLLARS---VPDLPISGIFDEFTEVCLMKYQSMYNIAITGILDVNTANSIL 98 Query: 167 VP 168 + Sbjct: 99 LT 100 >gi|296444924|ref|ZP_06886886.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296257592|gb|EFH04657.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 205 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 18/74 (24%) Query: 298 FRQDPGKINAMASTKIEF-------YSRNNTY------MHDTPEPILFNNVVRFETSGCV 344 + G K+ + ++ + +H T R + GCV Sbjct: 56 YVTPRGTYAPTGLQKMHYSRKYHMSPMPHSIFFNGGYAIHGTYSTGALG---RPASHGCV 112 Query: 345 RVR--NIIDLDVWL 356 R+ N L + Sbjct: 113 RLAPGNAAALYKMV 126 >gi|221640620|ref|YP_002526882.1| Lytic murein transglycosylase [Rhodobacter sphaeroides KD131] gi|221161401|gb|ACM02381.1| Lytic murein transglycosylase precursor [Rhodobacter sphaeroides KD131] Length = 417 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 13/84 (15%) Query: 89 LSRGGWPELPIRPLHLGNS---SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 GGWP G+ S L+ L +G + G SA++ + Sbjct: 344 AIAGGWPR--------GDRALASAERTELQRLLTAAGF--DTGGADGMIGPNTLSALRAW 393 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPV 169 Q GL G + + L + Sbjct: 394 QAARGLVADGYANEAVLNRLREGA 417 >gi|39936840|ref|NP_949116.1| hypothetical protein RPA3779 [Rhodopseudomonas palustris CGA009] gi|39650697|emb|CAE29220.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 519 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 N +H P P + GCVR+ + L T Sbjct: 125 NGVALHGGPLPGY------PASHGCVRM--PYEFAEKLFDKT 158 >gi|150018544|ref|YP_001310798.1| hypothetical protein Cbei_3725 [Clostridium beijerinckii NCIMB 8052] gi|149905009|gb|ABR35842.1| Domain of unknown function DUF1906 [Clostridium beijerinckii NCIMB 8052] Length = 714 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L+ L +G G + V++AV FQ GL+ G+ S T ++ V Sbjct: 242 LLQFALYCNGKEFDPNGFDGGYGNGVKNAVTKFQSFCGLNADGIAGSQTFASLLVSTGDN 301 Query: 173 IRQ 175 R+ Sbjct: 302 TRK 304 >gi|295425350|ref|ZP_06818053.1| ErfK family cell surface protein [Lactobacillus amylolyticus DSM 11664] gi|295065126|gb|EFG56031.1| ErfK family cell surface protein [Lactobacillus amylolyticus DSM 11664] Length = 211 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 23/186 (12%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 P+ S + E KV S R + L S + + P+ +K ++ Sbjct: 25 KEAPSQSSKPKETQKVKKVSAAEAARPYKDPKDLRSEGTWKLKSETKAYPKITSKKGLVI 84 Query: 258 L--LRQDPQYLKDNNIHMI--------DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 L+ + Y+ N + GK + E + F + Sbjct: 85 KVSLKGNRVYIIKNGKRVYTMLSSAGIYHNGKFDTPTGTYYVRYERGDTFFNHKLKEG-- 142 Query: 308 MASTKIEFYSRNNTYMHDTPEP--------ILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 A+ + +N H P + GC+R+ W++K+ Sbjct: 143 -ANYWTSWDKKNVYLFHSVPTKANGKYNLTEAAKLGKTQGSHGCIRLSLPD--SKWIMKN 199 Query: 360 TPTWSR 365 P ++ Sbjct: 200 IPAGTK 205 >gi|147899799|ref|NP_001079972.1| matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) [Xenopus laevis] gi|5305383|gb|AAD41624.1|AF072455_1 gelatinase B [Xenopus laevis] Length = 671 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L +G + +++A+ + Q + GL +G++D+ TLEAM P Sbjct: 50 LLQFGYLIQEQGSNAT----LQNALTIMQQKLGLKETGVLDAETLEAMKRP 96 >gi|301606175|ref|XP_002932698.1| PREDICTED: matrix metalloproteinase-21-like [Xenopus (Silurana) tropicalis] Length = 604 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 A+K FQ + L +G++D +T+ AMN P Sbjct: 101 PQFIDALKKFQKLNNLPATGILDDATINAMNKP 133 >gi|117625600|ref|YP_858923.1| putative general secretion pathway protein A [Escherichia coli APEC O1] gi|115514724|gb|ABJ02799.1| putative general secretion pathway protein A [Escherichia coli APEC O1] Length = 191 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 94 WKMSPEGESTIMRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 151 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 152 KTDGVVGFSTL 162 >gi|91212760|ref|YP_542746.1| general secretion pathway protein A [Escherichia coli UTI89] gi|218560384|ref|YP_002393297.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|237703053|ref|ZP_04533534.1| general secretion pathway protein A [Escherichia sp. 3_2_53FAA] gi|91074334|gb|ABE09215.1| probable general secretion pathway protein A [Escherichia coli UTI89] gi|218367153|emb|CAR04927.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|226902317|gb|EEH88576.1| general secretion pathway protein A [Escherichia sp. 3_2_53FAA] gi|294492719|gb|ADE91475.1| putative general secretory pathway protein A [Escherichia coli IHE3034] gi|307628358|gb|ADN72662.1| general secretory pathway component, cryptic [Escherichia coli UM146] gi|315284602|gb|EFU44047.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|323950237|gb|EGB46119.1| general secretion pathway protein A [Escherichia coli H252] gi|323954554|gb|EGB50337.1| general secretion pathway protein A [Escherichia coli H263] Length = 489 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTIMRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|304392959|ref|ZP_07374890.1| ErfK/YbiS/YcfS/YnhG [Ahrensia sp. R2A130] gi|303294957|gb|EFL89326.1| ErfK/YbiS/YcfS/YnhG [Ahrensia sp. R2A130] Length = 197 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 5/34 (14%) Query: 323 MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDV 354 +H T +P R ++GC+R+ ++ DL Sbjct: 156 IHGTTQPRSIG---RSVSNGCIRMLNEHVKDLYE 186 >gi|297700574|ref|XP_002827314.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-28-like [Pongo abelii] Length = 511 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 10/79 (12%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 W L +P G LR+ L G L+ + + A++ FQ Sbjct: 17 WGRLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPT-SSRFSDAIRAFQWVS 70 Query: 150 GLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 71 QLPVSGVLDRATLRQMTRP 89 >gi|158421788|ref|YP_001523080.1| lytic murein transglycosylase precursor [Azorhizobium caulinodans ORS 571] gi|158328677|dbj|BAF86162.1| lytic murein transglycosylase precursor [Azorhizobium caulinodans ORS 571] Length = 453 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ RL G + AV+ FQ R G+ P G + L M Sbjct: 401 ELQTRLSQMGY--DIGNIDGILGQKTRVAVQDFQTRAGMIPDGYPNLDVLARMRQ 453 >gi|15599187|ref|NP_252681.1| hypothetical protein PA3992 [Pseudomonas aeruginosa PAO1] gi|9950184|gb|AAG07379.1|AE004817_3 hypothetical protein PA3992 [Pseudomonas aeruginosa PAO1] Length = 448 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP L PL + S + L+ +L G + A A++ Q G Sbjct: 379 GAWP-LEDVPL---SRSQRI-ELQRQLAARGH--DPGAVDGIIGANTRKAIRACQQEFGW 431 Query: 152 DPSGMVDSSTLEAMNVP 168 G + L+ + P Sbjct: 432 PADGYPTPALLDRLRTP 448 >gi|16330360|ref|NP_441088.1| OxPPCycle gene [Synechocystis sp. PCC 6803] gi|2498704|sp|P73720|OPCA_SYNY3 RecName: Full=Putative OxPP cycle protein opcA gi|1652850|dbj|BAA17768.1| OxPPCycle gene [Synechocystis sp. PCC 6803] Length = 475 Score = 39.2 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 VQ L L G + + + +A+K Q G+ +G+ +A+ Sbjct: 75 DRVQSL---LAALGYY--TGPIDGITGPRMTAAIKSAQKALGVTATGLSSPEFKQALQTA 129 Query: 169 VDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 + R L RI K + + I A Sbjct: 130 FETAHREGNLLSTAERITKPYSPDLEGSGIADTIAA 165 >gi|304409229|ref|ZP_07390850.1| lytic murein transglycosylase [Shewanella baltica OS183] gi|307303232|ref|ZP_07582987.1| lytic murein transglycosylase [Shewanella baltica BA175] gi|304353050|gb|EFM17447.1| lytic murein transglycosylase [Shewanella baltica OS183] gi|306913592|gb|EFN44014.1| lytic murein transglycosylase [Shewanella baltica BA175] Length = 438 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S V++L+ +L +G + ++ FQ Sbjct: 362 NGGLPLTVSPPEQPRLSREQVKQLQAKLNEAGF--DVGKPDGVLGRNSVAGLQAFQRSKQ 419 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 420 MIADGFPSPEVFSALGLS 437 >gi|182679306|ref|YP_001833452.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Beijerinckia indica subsp. indica ATCC 9039] gi|182635189|gb|ACB95963.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Beijerinckia indica subsp. indica ATCC 9039] Length = 304 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 16/123 (13%) Query: 87 DILSRGGWPELPIRPLHLGNSSVS------VQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + + G +P P+ G + ++ L+ L I G ++ + E+ Sbjct: 172 QLAAAGVGLYVPPSPIVEGPRHQNGEHGQHIETLQSLLAILGY---GLSITNLYGMKTEA 228 Query: 141 AVKLFQMRHGLD-PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 V+ FQ + G+ D ST+E + + R + + + + Sbjct: 229 VVRAFQRHYRPALIDGIADVSTIETLKALLAAR------SAADKPQKVSSHPPEKAEKAE 282 Query: 200 IPA 202 PA Sbjct: 283 KPA 285 >gi|126724387|ref|ZP_01740230.1| Lytic murein transglycosylase [Rhodobacterales bacterium HTCC2150] gi|126705551|gb|EBA04641.1| Lytic murein transglycosylase [Rhodobacterales bacterium HTCC2150] Length = 434 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GWP RPL S + +++RLI G + G+ AV+ +Q G Sbjct: 368 GWPR-GDRPL----SFSEKKEMQKRLIRKGF--NTGGVDGIIGPNTIQAVREYQASIGWV 420 Query: 153 PSGMVDSSTLEAMN 166 P G V L+ + Sbjct: 421 PDGYVSLEVLKKLR 434 >gi|77464706|ref|YP_354210.1| membrane bound lytic murein transglycosylase B [Rhodobacter sphaeroides 2.4.1] gi|77389124|gb|ABA80309.1| Membrane bound lytic murein transglycosylase B [Rhodobacter sphaeroides 2.4.1] Length = 417 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 13/84 (15%) Query: 89 LSRGGWPELPIRPLHLGNS---SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 GGWP G+ S L+ L +G + G SA++ + Sbjct: 344 AIAGGWPR--------GDRALASAERTELQRLLTAAGF--DTGGADGMIGPNTLSALRAW 393 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPV 169 Q GL G + + L + Sbjct: 394 QAARGLVADGYANEAVLNRLREGA 417 >gi|22298082|ref|NP_681329.1| putative OxPPCycle protein OpcA [Thermosynechococcus elongatus BP-1] gi|22294260|dbj|BAC08091.1| opcA [Thermosynechococcus elongatus BP-1] Length = 448 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ L G + L +++SA++ + +H L +G V EA+ Sbjct: 59 QQLLAALGYY--TGPLDGILGPWMQSAIRTAEKKHNLPLTGRVTPQLREAL 107 >gi|281346053|gb|EFB21637.1| hypothetical protein PANDA_004527 [Ailuropoda melanoleuca] Length = 564 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L PS + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 4 LKSYGYLLPSDSRAPALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 56 >gi|192292666|ref|YP_001993271.1| hypothetical protein Rpal_4300 [Rhodopseudomonas palustris TIE-1] gi|192286415|gb|ACF02796.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 519 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 N +H P P + GCVR+ + L T Sbjct: 125 NGVALHGGPLPGY------PASHGCVRM--PYEFAEKLFDKT 158 >gi|326331898|ref|ZP_08198185.1| peptidoglycan binding domain-containing protein [Nocardioidaceae bacterium Broad-1] gi|325950395|gb|EGD42448.1| peptidoglycan binding domain-containing protein [Nocardioidaceae bacterium Broad-1] Length = 450 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Query: 86 QDILSRGGWPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 +D+ +RG W L L G++ V+ L+ L + + ++ D Sbjct: 363 RDLWTRGAWKTLWAANRHPILKRGSAGDQVRDLQRALNSTTRTEERVKVTGVLDWTTHVG 422 Query: 142 VKLFQMRHGLDPSGMVDSSTL 162 + +Q R G +GM T Sbjct: 423 LVAYQRRLGRTTNGMATDITW 443 >gi|307186245|gb|EFN71910.1| Interstitial collagenase [Camponotus floridanus] Length = 255 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 107 SSVSVQRLRERLIISGDLDPSK--GLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTL 162 + V L G L+ + S D + A+ LFQ +GL +G++ T+ Sbjct: 23 TYDDVAEAFRYLRTYGFLENEENHQQSSLLDNATALSEALSLFQEYYGLPGNGVLTVETI 82 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKL 186 M P + + K Sbjct: 83 RVMRRPRCGAADIHAYSPLTRKWP 106 >gi|217976443|ref|YP_002360590.1| hypothetical protein Msil_0248 [Methylocella silvestris BL2] gi|217501819|gb|ACK49228.1| hypothetical protein Msil_0248 [Methylocella silvestris BL2] Length = 286 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 11/78 (14%) Query: 105 GNSSVSVQRLRERLIIS--GDLDPSKGLSVAFDAYVESAVKLFQ---------MRHGLDP 153 G+ V +++ L I G ++ ++ + AV ++ P Sbjct: 28 GDRGQHVALIQQALTILGAGLIEANEITREFYGPSTSRAVLKYKGPPRNILNTELRQTKP 87 Query: 154 SGMVDSSTLEAMNVPVDL 171 +V T+ ++ + Sbjct: 88 DAIVGKRTIAWLDQDMKE 105 >gi|107103508|ref|ZP_01367426.1| hypothetical protein PaerPA_01004578 [Pseudomonas aeruginosa PACS2] Length = 448 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP L PL + S + L+ +L G + A A++ Q G Sbjct: 379 GAWP-LEDVPL---SRSQRI-ELQRQLAARGH--DPGAVDGIIGANTRKAIRACQQEFGW 431 Query: 152 DPSGMVDSSTLEAMNVP 168 G + L+ + P Sbjct: 432 PADGYPTPALLDRLRTP 448 >gi|29565799|ref|NP_817371.1| gp33 [Mycobacterium phage Che8] gi|29424524|gb|AAN12431.1| gp33 [Mycobacterium phage Che8] Length = 333 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 17/87 (19%) Query: 102 LHLGNSSVSVQRLRERLII-----SGDLDPSKGLSVAFDAYVESAVKLFQMRH------- 149 L G+SS ++R++ + +GDL + +D + +AV Q R+ Sbjct: 10 LGPGDSSEEIRRIKTFMRKKFASYAGDL----ADTPLYDEQMTAAVAEMQARYNAAGLLR 65 Query: 150 -GLDPSGMVDSSTLEAMNVPVDLRIRQ 175 GL G+V + T M + Sbjct: 66 DGLYIPGIVGAETKYVMGYLPRPVVDT 92 >gi|17231510|ref|NP_488058.1| hypothetical protein all4018 [Nostoc sp. PCC 7120] gi|17133153|dbj|BAB75717.1| opcA [Nostoc sp. PCC 7120] Length = 459 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L G + + E+A++ Q+++ L +G T+ + R Sbjct: 65 LASLGFY--NGPIDGILGPQTETALRQVQIKYALPETGTATPETIAKLREEFVKR 117 >gi|83859611|ref|ZP_00953131.1| hypothetical protein OA2633_06419 [Oceanicaulis alexandrii HTCC2633] gi|83851970|gb|EAP89824.1| hypothetical protein OA2633_06419 [Oceanicaulis alexandrii HTCC2633] Length = 472 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 17/124 (13%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHL 104 ++ + + + + + P ++ +I + A D + L Sbjct: 194 RPLMPESREAAMRYWNRSVAWGRPFGAQSSILAQRRLQAHLVDC-------PVTQDSLAR 246 Query: 105 GNSSVS-----VQRLRER---LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 V L R L G + + + A AV+ FQ G D + Sbjct: 247 IARDPDRVMADVIGLNLRQAALSALGYY--NGSIDGTYGAETRRAVRAFQRELGYDETAS 304 Query: 157 VDSS 160 + Sbjct: 305 LTPR 308 >gi|260426102|ref|ZP_05780081.1| lytic murein transglycosylase [Citreicella sp. SE45] gi|260420594|gb|EEX13845.1| lytic murein transglycosylase [Citreicella sp. SE45] Length = 391 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P + G S ++RL+ L G + A +AV+ Q + GL Sbjct: 321 GAPVYDAGNPNPGLSGDQMKRLQTALAGRGY--DVGAIDGILGAGTRAAVRDMQAQLGLP 378 Query: 153 PSG 155 G Sbjct: 379 ADG 381 >gi|218889726|ref|YP_002438590.1| putative murein transglycosylase [Pseudomonas aeruginosa LESB58] gi|218769949|emb|CAW25710.1| putative murein transglycosylase [Pseudomonas aeruginosa LESB58] Length = 448 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP L PL + S + L+ +L G + A A++ Q G Sbjct: 379 GAWP-LEDVPL---SRSQRI-ELQRQLAARGH--DPGAVDGIIGANTRKAIRACQQEFGW 431 Query: 152 DPSGMVDSSTLEAMNVP 168 G + L+ + P Sbjct: 432 PADGYPTPALLDRLRTP 448 >gi|116052030|ref|YP_789126.1| putative murein transglycosylase [Pseudomonas aeruginosa UCBPP-PA14] gi|254236884|ref|ZP_04930207.1| hypothetical protein PACG_02905 [Pseudomonas aeruginosa C3719] gi|115587251|gb|ABJ13266.1| putative murein transglycosylase [Pseudomonas aeruginosa UCBPP-PA14] gi|126168815|gb|EAZ54326.1| hypothetical protein PACG_02905 [Pseudomonas aeruginosa C3719] Length = 448 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP L PL + S + L+ +L G + A A++ Q G Sbjct: 379 GAWP-LEDVPL---SRSQRI-ELQRQLAARGH--DPGAVDGIIGANTRKAIRACQQEFGW 431 Query: 152 DPSGMVDSSTLEAMNVP 168 G + L+ + P Sbjct: 432 PADGYPTPALLDRLRTP 448 >gi|254388457|ref|ZP_05003692.1| peptidoglycan-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|197702179|gb|EDY47991.1| peptidoglycan-binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 349 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + V++ L G + +F AV+ +Q GL +G V Sbjct: 108 RGLDVKQFETNLSALGY--TGFTVDDSFTELTARAVRAWQRDLGLPRTGRVG 157 >gi|254242677|ref|ZP_04935999.1| hypothetical protein PA2G_03440 [Pseudomonas aeruginosa 2192] gi|126196055|gb|EAZ60118.1| hypothetical protein PA2G_03440 [Pseudomonas aeruginosa 2192] Length = 448 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP L PL + S + L+ +L G + A A++ Q G Sbjct: 379 GAWP-LEDVPL---SRSQRI-ELQRQLAARGH--DPGAVDGIIGANTRKAIRACQQEFGW 431 Query: 152 DPSGMVDSSTLEAMNVP 168 G + L+ + P Sbjct: 432 PADGYPTPALLDRLRTP 448 >gi|126738028|ref|ZP_01753749.1| hypothetical protein RSK20926_05827 [Roseobacter sp. SK209-2-6] gi|126720525|gb|EBA17230.1| hypothetical protein RSK20926_05827 [Roseobacter sp. SK209-2-6] Length = 389 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 2/74 (2%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GG P G S +++L+ +L G + A AV+ Q R G+ Sbjct: 318 GGEPVYQAGNPDQGLSGSQMKQLQRKLQALGH--DVGKVDGILGAKSRQAVQREQQRLGM 375 Query: 152 DPSGMVDSSTLEAM 165 + L + Sbjct: 376 PADAWPTPALLNRL 389 >gi|332264806|ref|XP_003281419.1| PREDICTED: matrix metalloproteinase-28 [Nomascus leucogenys] Length = 520 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G LR+ L G L+ P S F A++ FQ Sbjct: 17 WGRLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|167645415|ref|YP_001683078.1| peptidoglycan-binding domain-containing protein [Caulobacter sp. K31] gi|167347845|gb|ABZ70580.1| Peptidoglycan-binding domain 1 protein [Caulobacter sp. K31] Length = 997 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S + ++ L G + A+ +Q L SG +D TL + Sbjct: 937 SAGLATAQKALSRLGYY--QGPQDGVASPALRMAIAAYQRDQSLPTSGALDGETLSRLAT 994 >gi|26249918|ref|NP_755958.1| general secretion pathway protein A [Escherichia coli CFT073] gi|227883454|ref|ZP_04001259.1| general secretion pathway protein A [Escherichia coli 83972] gi|300979894|ref|ZP_07174770.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|301046094|ref|ZP_07193272.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|26110346|gb|AAN82532.1|AE016767_292 Probable general secretion pathway protein A [Escherichia coli CFT073] gi|227839598|gb|EEJ50064.1| general secretion pathway protein A [Escherichia coli 83972] gi|300301920|gb|EFJ58305.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300409405|gb|EFJ92943.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|307555410|gb|ADN48185.1| export protein A for general secretion pathway [Escherichia coli ABU 83972] gi|315292360|gb|EFU51712.1| conserved hypothetical protein [Escherichia coli MS 153-1] Length = 489 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITHDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 450 KTDGVVGFSTL 460 >gi|126463546|ref|YP_001044660.1| lytic murein transglycosylase [Rhodobacter sphaeroides ATCC 17029] gi|126105210|gb|ABN77888.1| lytic murein transglycosylase [Rhodobacter sphaeroides ATCC 17029] Length = 419 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 13/84 (15%) Query: 89 LSRGGWPELPIRPLHLGNS---SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 GGWP G+ S L+ L +G + G SA++ + Sbjct: 346 AIAGGWPR--------GDRALASAERTELQRLLTAAGF--DTGGADGMIGPNTLSALRAW 395 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPV 169 Q GL G + + L + Sbjct: 396 QAARGLVADGYANEAVLNRLREGA 419 >gi|224070919|ref|XP_002187592.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 572 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P ++ + A+ Q GL +G++D +TLE M P Sbjct: 29 LTKFGYLPPPDPVTGQLQTQEELTKAITAMQRFGGLKATGVLDEATLELMKTP 81 >gi|300785515|ref|YP_003765806.1| peptidoglycan binding protein [Amycolatopsis mediterranei U32] gi|299795029|gb|ADJ45404.1| putative peptidoglycan binding protein [Amycolatopsis mediterranei U32] Length = 320 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 8/102 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V ++ L+ + + +F V FQ+ GL G+VD +T A Sbjct: 152 GQHDECVTEVQNLLVAA---HGRLSVDGSFGPETLRRVTAFQVLAGLPARGVVDEATKTA 208 Query: 165 M---NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 + + + R++ + + + + Sbjct: 209 LYDHRASMATWSAAMV--EQRVRAVFTEAPDTAVAIARCASF 248 >gi|298243549|ref|ZP_06967356.1| ErfK/YbiS/YcfS/YnhG family protein [Ktedonobacter racemifer DSM 44963] gi|297556603|gb|EFH90467.1| ErfK/YbiS/YcfS/YnhG family protein [Ktedonobacter racemifer DSM 44963] Length = 319 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 40/154 (25%), Gaps = 40/154 (25%) Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VN+ L A ENG V + GR + TP + N + P + Sbjct: 185 VNLSTQYLYAYENGAVVRSFPITSGRPELYTPAGTFTVLSKGANLTFYSPWPV------- 237 Query: 258 LLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 P Y ++ + +++ W PG N Sbjct: 238 ---GSPYYYSPEHVDYALKLTTGGIYIHTAGWREYNDFG------PGTQNP-----HTLP 283 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCV--RVRN 348 T + GC+ RV + Sbjct: 284 D-------GTQSTG---------SHGCINTRVSD 301 >gi|289208505|ref|YP_003460571.1| ErfK/YbiS/YcfS/YnhG family protein [Thioalkalivibrio sp. K90mix] gi|288944136|gb|ADC71835.1| ErfK/YbiS/YcfS/YnhG family protein [Thioalkalivibrio sp. K90mix] Length = 197 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDT 360 Y+H T E + GCVR+RN +I+L L T Sbjct: 136 SYHRYIYIHGTDEEGRIGQP---ASEGCVRMRNDEVIELFPRLPVGT 179 >gi|298492601|ref|YP_003722778.1| polynucleotide adenylyltransferase region ['Nostoc azollae' 0708] gi|298234519|gb|ADI65655.1| Polynucleotide adenylyltransferase region ['Nostoc azollae' 0708] Length = 907 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 13/112 (11%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 ++ +G+ + + + + ++ A + + P +S + Sbjct: 140 TVMALGIHVDTGSLTYNQ-----STPRDALALAWLMQQGASLSVISTYRDPGLSPQLQQL 194 Query: 78 TEKAIAFYQDILSRG---GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 +A+ + + RG W L G S L +L+ ++D Sbjct: 195 LTEALENLEYLCLRGYTMAWVTLKTGAFVPGLSG-----LASKLVELTEIDA 241 >gi|254467082|ref|ZP_05080493.1| hypothetical protein RBY4I_3695 [Rhodobacterales bacterium Y4I] gi|206687990|gb|EDZ48472.1| hypothetical protein RBY4I_3695 [Rhodobacterales bacterium Y4I] Length = 548 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 24/173 (13%) Query: 95 PELPIRPLHLGNSSV-SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GL- 151 P+ ++ V+ +R L +G S +S DA + + ++ FQ + G Sbjct: 20 PKTGESKFKPVKNAPADVELVRLMLKANGY---SVEISTKCDAGLITMIRDFQKKKLGFK 76 Query: 152 DPSGMVDS--STLEAMNVPVD---------LRIRQLQVNLMRIKKLLEQKMGLRY-VLVN 199 P G+VD T A + R+ ++ ++ + E + G Sbjct: 77 KPDGIVDPGMRTWNAGLPKLAAMHAADTKVERVEVVENGKTKLITVAEFEAGQEELRRKL 136 Query: 200 IPAASLEA------VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + A + V+ + + +P W Sbjct: 137 LAKAEMMYGQAESWVDFCNDVEHTRQGNETFLNALTEFAVSVVNDKTDPPWTP 189 >gi|206599910|ref|YP_002241715.1| gp30 [Mycobacterium phage Fruitloop] gi|206286998|gb|ACI12344.1| gp30 [Mycobacterium phage Fruitloop] Length = 332 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 8/68 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--------GLDP 153 L G+ S +++++ + + + +D + + V Q R+ GL Sbjct: 10 LGPGDRSDEIRKIKAFMRRKFSYAATLADTEFYDEAMAAVVAEMQSRYNTAGQLRDGLYI 69 Query: 154 SGMVDSST 161 G+V + T Sbjct: 70 PGIVGAET 77 >gi|329940078|ref|ZP_08289360.1| Putative peptidoglycan binding domain 1 [Streptomyces griseoaurantiacus M045] gi|329300904|gb|EGG44800.1| Putative peptidoglycan binding domain 1 [Streptomyces griseoaurantiacus M045] Length = 458 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 5/110 (4%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 A + SAV+ +Q GLDP+G++D + +A+ +R+ L+ Sbjct: 247 DGVLTASLMSAVERWQKAAGLDPTGVLDPA--DAVVAKSAVRVSGLRAQPGDEAADELMS 304 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + V +P SL+ G V V V DR T + Sbjct: 305 LTSTTKTVTVPVESLDL---GSVSTGRRVTVVLPDRSTTPGRVAAISTVV 351 >gi|283852763|ref|ZP_06370027.1| Peptidoglycan-binding domain 1 protein [Desulfovibrio sp. FW1012B] gi|283571844|gb|EFC19840.1| Peptidoglycan-binding domain 1 protein [Desulfovibrio sp. FW1012B] Length = 381 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 14/132 (10%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V + RL G + D + ++K +Q GL P + L+ + Sbjct: 91 VADTQARLAGLGWYP--GPVDGRLDRMTKWSIKAYQTAVGLAPRPEASQALLDELARNPK 148 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE----NGKVGLRSTVIVGRVDR 226 L E + + +V P EA + N K R G + Sbjct: 149 PAPADL--------VFPEFRTEEVHDVVLSPERLAEARDFYAVNRKALARVRERYGVPEE 200 Query: 227 QTPILHSRINRI 238 L + R+ Sbjct: 201 YLVALLAVETRV 212 >gi|218508162|ref|ZP_03506040.1| putative hemaglutinin protein [Rhizobium etli Brasil 5] Length = 373 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 +++ ++ L +G + A +A+K FQ G P G V +T++A+ Sbjct: 309 AIRNIQAILNNNGF--DAGVPDGEMGAKTVTAIKNFQKSIGQAPDGKVTDATVKALLERN 366 Query: 170 DLRIRQL 176 + + Sbjct: 367 KQVAKAI 373 >gi|169351524|ref|ZP_02868462.1| hypothetical protein CLOSPI_02304 [Clostridium spiroforme DSM 1552] gi|169291746|gb|EDS73879.1| hypothetical protein CLOSPI_02304 [Clostridium spiroforme DSM 1552] Length = 492 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +V+ L++ L I G K F +A+K F+ + L G+ Sbjct: 412 DSNVKSLQKGLKILGY--DCKREDGYFSNETVAALKQFESTNNLTVDGI 458 >gi|27379491|ref|NP_771020.1| transglycolase [Bradyrhizobium japonicum USDA 110] gi|27352643|dbj|BAC49645.1| bll4380 [Bradyrhizobium japonicum USDA 110] Length = 409 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNV 167 VQ ++ RL +G + G A+K FQ G+ G L + Sbjct: 350 AEVQEMQTRLTKAGF--DTGGTDGRVGNDTMKAIKDFQQHAGITPADGYGGLKVLARLRQ 407 Query: 168 PV 169 Sbjct: 408 GP 409 >gi|325981398|ref|YP_004293800.1| peptidoglycan-binding domain 1 protein [Nitrosomonas sp. AL212] gi|325530917|gb|ADZ25638.1| Peptidoglycan-binding domain 1 protein [Nitrosomonas sp. AL212] Length = 170 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ +++ L+ +G + +A++ FQ +G+ P G +D TL A+ V Sbjct: 115 IRDIQQALVNAGF--NPGPVDGKSGGKTTAAIEAFQKENGITP-GKIDKRTLRALGV 168 >gi|145351115|ref|XP_001419931.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580164|gb|ABO98224.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 319 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V L +RL G D A++ +Q+ GL PSG +S+ Sbjct: 12 GDSGTDV-SLAQRL--LGRDARRA--HGVCDRETTEALRAWQISRGLKPSGFFGASSRAQ 66 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 M + + R R+L + + E+ Sbjct: 67 MAM-EEERWRELGGGALLERLWEEEARARDASE 98 >gi|126174804|ref|YP_001050953.1| lytic murein transglycosylase [Shewanella baltica OS155] gi|125998009|gb|ABN62084.1| lytic murein transglycosylase [Shewanella baltica OS155] Length = 411 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S V++L+ +L +G + ++ FQ Sbjct: 335 NGGLPLTVSPPEQPRLSREQVKQLQAKLNEAGF--DVGKPDGVLGRNSVAGLQAFQRSKQ 392 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 393 MIADGFPSPEVFSALGLS 410 >gi|152985260|ref|YP_001346502.1| putative lipoprotein [Pseudomonas aeruginosa PA7] gi|150960418|gb|ABR82443.1| lipoprotein, putative [Pseudomonas aeruginosa PA7] Length = 448 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 5/80 (6%) Query: 91 RGGWPELPIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 +GG + PL + S + L+++L G + A A++ Q Sbjct: 372 KGGGRIVAAWPLEDVPLSRSQRI-ELQQQLAARGH--DPGAVDGIIGANTRKAIRACQQE 428 Query: 149 HGLDPSGMVDSSTLEAMNVP 168 G G + L+ + P Sbjct: 429 FGWPADGYPTPALLDRLRTP 448 >gi|114332050|ref|YP_748272.1| peptidoglycan binding domain-containing protein [Nitrosomonas eutropha C91] gi|114309064|gb|ABI60307.1| Peptidoglycan-binding domain 1 protein [Nitrosomonas eutropha C91] Length = 194 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++++++ L +G ++A+ FQ +HGL G + TL + + Sbjct: 139 IRKIQKALKDAGL--NPGAADGMMGPRTQNALVDFQKQHGLAE-GKITKETLRELGIT 193 >gi|116492161|ref|YP_803896.1| hypothetical protein PEPE_0358 [Pediococcus pentosaceus ATCC 25745] gi|116102311|gb|ABJ67454.1| hypothetical protein PEPE_0358 [Pediococcus pentosaceus ATCC 25745] Length = 221 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 13/108 (12%) Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT---- 326 M G + F +P A + F + Y+ T Sbjct: 118 YTMYASTGSHESPTPTGTFKIQAERGDFFYNPTSKEG-AKYWVSF-KDHGIYLFHTVPTD 175 Query: 327 -PEPILFNN----VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 L + ++ GCVR+ W+ + P + I Sbjct: 176 KNGKFLEDEAEQLGKEAQSHGCVRLAVPD--AKWIYEKVPEGMKVEIH 221 >gi|118098430|ref|XP_415092.2| PREDICTED: similar to membrane-type-4 matrix metalloproteinase [Gallus gallus] Length = 592 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 20/113 (17%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------- 168 L G L P ++ + A+ Q GL+ +G++D +TLE M P Sbjct: 50 LTKFGYLPPPDPITGQLQTQEELTKAITAMQRFGGLEATGVLDEATLELMKTPRCSLPDM 109 Query: 169 --VDLRIRQLQVNL---------MRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 R ++ + R++ ++ + + +L+ + Sbjct: 110 AGPAARRKRHTQAVTKWNKRNLSWRVRTFPKESHLGHDTVRALMYYALKVWSD 162 >gi|260459702|ref|ZP_05807956.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259034504|gb|EEW35761.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 142 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 4/63 (6%) Query: 310 STKIEF-YSRNNTYMHDTPE---PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 S K + + H + R + GCVR+ + + + Sbjct: 76 SRKYHMSPMPYSVFFHGGYAIHGTGAVRQLGRPASHGCVRLHTANAAAFYSMVREVGFGN 135 Query: 366 YHI 368 I Sbjct: 136 TRI 138 >gi|325123472|gb|ADY82995.1| transglycosylase, putative [Acinetobacter calcoaceticus PHEA-2] Length = 393 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 324 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 381 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 382 AFRQEQAQKMMQ 393 >gi|271969741|ref|YP_003343937.1| peptidoglycan binding domain-containing protein [Streptosporangium roseum DSM 43021] gi|270512916|gb|ACZ91194.1| peptidoglycan binding domain-containing protein [Streptosporangium roseum DSM 43021] Length = 587 Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 R + G + V++L+ L G ++ FD+ +AV+ + + G Sbjct: 117 RTMAPGTTGADVRQLQTALRRLGF---GAPVTGVFDSATTAAVQRWYAKRG 164 >gi|327269601|ref|XP_003219582.1| PREDICTED: matrix metalloproteinase-16-like [Anolis carolinensis] Length = 610 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ ++SA+ Q +G++ +G VD +T++ M P Q Sbjct: 49 LQKYGYLPPTDPRMSVLRTAETMKSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 108 Query: 176 LQVN 179 + N Sbjct: 109 TRGN 112 >gi|194435137|ref|ZP_03067372.1| probable general secretion pathway protein A [Shigella dysenteriae 1012] gi|194416634|gb|EDX32768.1| probable general secretion pathway protein A [Shigella dysenteriae 1012] gi|332085960|gb|EGI91124.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 155-74] Length = 406 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 309 WKMSPEGESTITCDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 366 Query: 152 DPSGMVDSSTL 162 G+V STL Sbjct: 367 KTDGVVGFSTL 377 >gi|218674837|ref|ZP_03524506.1| putative peptidoglycan binding (cell wall degradation) protein [Rhizobium etli GR56] Length = 318 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V ++++L+ G + +A+ FQ G+ +G L A+ Sbjct: 147 VMGIQQQLVRRGLY--NGVPDGIIGPRTSAAILFFQETVGMAQTGEATPEVLAALKTDAA 204 >gi|160935588|ref|ZP_02082963.1| hypothetical protein CLOBOL_00478 [Clostridium bolteae ATCC BAA-613] gi|158441332|gb|EDP19042.1| hypothetical protein CLOBOL_00478 [Clostridium bolteae ATCC BAA-613] Length = 674 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 4/57 (7%) Query: 309 ASTKIEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + K HD F + GCV + +L + P Sbjct: 501 SPVKFWMPFNGGIGFHDASWRSSFGGSIYKNGGSHGCVNMPYDKAKELFENVYAGMP 557 >gi|114766698|ref|ZP_01445637.1| Membrane-bound lytic murein transglycosylase B [Pelagibaca bermudensis HTCC2601] gi|114541088|gb|EAU44143.1| Membrane-bound lytic murein transglycosylase B [Roseovarius sp. HTCC2601] Length = 415 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 2/84 (2%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 D L+ GG P G + + L+ L +G F + E+ ++ Sbjct: 333 HLSDRLAGGGPVRGTFPPDRYGFTIDERKELQALLNRAGY--DVGTPDGVFGSKTEAGIR 390 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 +Q R GL +G + L+ + Sbjct: 391 SYQARAGLAVTGEPSQALLQQLRR 414 >gi|73995001|ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein [Canis familiaris] Length = 661 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V + L G L P+ + + A+ Q GL+ +G++D +TL M Sbjct: 108 DLRVAEMEW-LSRFGYLPPADSTTGQLQTQEELSKAIAAMQRFGGLEATGILDVATLALM 166 Query: 166 NVP 168 P Sbjct: 167 KTP 169 >gi|13471570|ref|NP_103136.1| transglycolase [Mesorhizobium loti MAFF303099] gi|14022312|dbj|BAB48922.1| probable transglycolase [Mesorhizobium loti MAFF303099] Length = 392 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 7/92 (7%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 T A T +A G P L R G ++ ++ L+ +L G + Sbjct: 308 TYALTAANLA-----ARLAGAPALDPRNPDQGLNNEQMKALQTKLEARGY--DVGTVDGI 360 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A++ Q+R GL G L + Sbjct: 361 LGTNTREAIRKEQIRLGLPVDGWPTPELLAKL 392 >gi|147904008|ref|NP_001079285.1| matrix metalloproteinase-21 precursor [Xenopus laevis] gi|50400815|sp|O93470|MMP21_XENLA RecName: Full=Matrix metalloproteinase-21; Short=MMP-21; Short=xMMP; Flags: Precursor gi|3211705|gb|AAC21447.1| matrix metalloproteinase [Xenopus laevis] Length = 604 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 19/44 (43%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + A+K FQ + L +G +D +T+ AMN P Sbjct: 90 PRQEVAEPTKSPQFIDALKKFQKLNNLPVTGTLDDATINAMNKP 133 >gi|301605887|ref|XP_002932554.1| PREDICTED: matrix metalloproteinase-9-like [Xenopus (Silurana) tropicalis] Length = 684 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + +SV V L+ G L +G S ++ A+ Q + GL +G Sbjct: 31 IFPGEIRSNMTSVEVAE--WYLVKFGYLPLQQGPSNHH-VSIKKALSQMQRKLGLKVTGN 87 Query: 157 VDSSTLEAMNVP 168 +D+ TLEAM P Sbjct: 88 LDAETLEAMKSP 99 >gi|254292546|ref|YP_003058569.1| peptidoglycan-binding protein [Hirschia baltica ATCC 49814] gi|254041077|gb|ACT57872.1| Peptidoglycan-binding domain 1 protein [Hirschia baltica ATCC 49814] Length = 312 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 +++L++ L G + + +AV+ FQ+R GL +G + +TLE + V Sbjct: 256 IRQLQQSLNNQGF--DAGTVDGQVGRQTLTAVRDFQLREGLP-TGGLTLATLERLGVNP 311 >gi|167758399|ref|ZP_02430526.1| hypothetical protein CLOSCI_00739 [Clostridium scindens ATCC 35704] gi|167664296|gb|EDS08426.1| hypothetical protein CLOSCI_00739 [Clostridium scindens ATCC 35704] Length = 571 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 41/179 (22%), Gaps = 57/179 (31%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIM 239 R +G Y V++ + V+NG+V L+S ++ G TP + Sbjct: 432 RAASHEGNDVGSTYAEVDLSNQMMYFVQNGQVVLQSGIVTGNPNKGNGTPQGVYSLAYKA 491 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 + ++ K + + Sbjct: 492 LD------------------------------QVLRGTKKP------------DGTYEYE 509 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRVRNIIDLDVWL 356 K HD F + GCV + D+ L Sbjct: 510 TP---------VKFWMPFNGGIGFHDATWQSSFGGSRYQTNGSHGCVNL--PYDVAAQL 557 >gi|187736252|ref|YP_001878364.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] gi|187426304|gb|ACD05583.1| ErfK/YbiS/YcfS/YnhG family protein [Akkermansia muciniphila ATCC BAA-835] Length = 285 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 44/175 (25%) Query: 197 LVNIPAASLEAVENGKVGLRSTV---IVGRVDR----QTPILHSRINRIMFNPYWVIPRS 249 +V++ + + NG+V V G DR +TP+ RI + P+ Sbjct: 44 VVSVRDQKMAVMRNGRVVKTYPVSTSKFGLGDRKGSCRTPLGAHRIASKI---GSGQPKG 100 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR-QDPGKINAM 308 ++ K G+ V + +P NA Sbjct: 101 MVFKSRKP-------------------TGECVAPNSPGRDPIVTRIMWLEGLEPRNRNA- 140 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTP 361 Y+H T E + GCVR+ ++ + L P Sbjct: 141 --------HSRLIYIHGTAEERTIGTP---ASYGCVRMTSNDVYEAFNLLRTGDP 184 >gi|33592814|ref|NP_880458.1| putative peptidoglycan-binding protein [Bordetella pertussis Tohama I] gi|33572462|emb|CAE42032.1| putative peptidoglycan-binding protein [Bordetella pertussis Tohama I] gi|332382227|gb|AEE67074.1| putative peptidoglycan-binding protein [Bordetella pertussis CS] Length = 409 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + L+E L+ G A++ Q + GL G TL+ Sbjct: 347 PGLSRAERRELQELLLARGF--DIGKPDGVIGVRTRQALQTVQGQLGLPADGRAGQKTLK 404 Query: 164 AMNVP 168 A+ P Sbjct: 405 ALRTP 409 >gi|332839031|ref|XP_001154045.2| PREDICTED: matrix metalloproteinase-19 [Pan troglodytes] Length = 505 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F + A++ FQ L SG +D +T M P Sbjct: 32 LSQYGYLQKPLEGSNNFKPEDITEALRAFQEASELPVSGQLDDATRARMRQP 83 >gi|300113590|ref|YP_003760165.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus watsonii C-113] gi|299539527|gb|ADJ27844.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus watsonii C-113] Length = 217 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 5/38 (13%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 Y+H P+ + + GC+R+ N +++L + Sbjct: 174 IYIHGVPDAAVMG---LPGSHGCIRIHNGPVLELFKQV 208 >gi|294675803|ref|YP_003576418.1| membrane-bound lytic murein transglycosylase B [Rhodobacter capsulatus SB 1003] gi|294474623|gb|ADE84011.1| membrane-bound lytic murein transglycosylase B [Rhodobacter capsulatus SB 1003] Length = 419 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP R L + ++ L G +KG A AV +Q HG+ Sbjct: 351 PWPR-EGRAL----TDAEKVEVQRLLTAQGY--DTKGTDGLIGAGTIGAVMDYQRDHGMT 403 Query: 153 PSGMVDSSTLEAMNV 167 P+G V LE++ Sbjct: 404 PNGWVTIKLLESLRK 418 >gi|116253070|ref|YP_768908.1| lytic transglycosylase [Rhizobium leguminosarum bv. viciae 3841] gi|115257718|emb|CAK08816.1| putative lytic transglycosylase [Rhizobium leguminosarum bv. viciae 3841] Length = 405 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 13/147 (8%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 +G+ + L+ + + F + ++ +K I T Sbjct: 272 WFALGVKPRDGNTAFGDLEGDLVLPQGR-MGPAF-IAYPNFKIYLE-----WNKSFIYTT 324 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 A Y G P L P G +S ++ L+ +L G + + Sbjct: 325 SAA---YFGTRLSGAEPYLKGVP-EQGLASDQMKALQTKLQSLGH--DVGEIDGILGSGT 378 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A++ Q R G+ G + L A+ Sbjct: 379 RVAIQKEQQRLGMPADGWATPALLNAL 405 >gi|328724695|ref|XP_003248224.1| PREDICTED: matrix metalloproteinase-16-like isoform 3 [Acyrthosiphon pisum] Length = 583 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 15/82 (18%) Query: 118 LIISGDLDPSKGLSV----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L PS + + A+ FQ GL+ +G +D TL M++P Sbjct: 38 LSQFGYLSPSMKNPNSGHIMSEETMARALMEFQSFVGLNLTGHLDDETLHYMSMPRCGVR 97 Query: 169 ------VDLRIRQLQVNLMRIK 184 D R R+ + R + Sbjct: 98 DKVGFATDSRSRRYALQGSRWR 119 >gi|302036308|ref|YP_003796630.1| hypothetical protein NIDE0941 [Candidatus Nitrospira defluvii] gi|300604372|emb|CBK40704.1| conserved exported protein of unknown function, contains von Willebrand factor, type A and vault protein inter-alpha-trypsin domain [Candidatus Nitrospira defluvii] Length = 712 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 I+ S+ I + + DRF+ + S PI T Sbjct: 359 FIIDRSGSMAGASIEQAK-GSLTAALSRLTTQDRFNIIQFNHT--VRSLFPIPQPVTTKS 415 Query: 78 TEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISG 122 ++AI + + + + GG LP + L S +Q++ LI G Sbjct: 416 MQQAIRYTEHLAADGGTEILPALRQALKSPQDSARLQQI--ILITDG 460 >gi|294851948|ref|ZP_06792621.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026] gi|294820537|gb|EFG37536.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026] Length = 338 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 275 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 332 >gi|255319277|ref|ZP_05360494.1| secretion activator protein [Acinetobacter radioresistens SK82] gi|255303670|gb|EET82870.1| secretion activator protein [Acinetobacter radioresistens SK82] Length = 255 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 20/107 (18%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 +A ++I R W +L L ++ D + G S A Sbjct: 143 LAEAKEIYRRDWWEKLGAEQL-----HSAIV------FQLWDFAVNAGKS--------RA 183 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 +K Q G+ G++ T+ A+N +DL L + R+K + Sbjct: 184 IKELQQVAGVPADGIIGPKTIAAVNA-MDLNDVLLTLTAERLKFYTD 229 >gi|325981114|ref|YP_004293516.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] gi|325530633|gb|ADZ25354.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] Length = 159 Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 Y+H TP+ + + GC+R+RN DL Sbjct: 115 IYIHGTPDSVEMGKPG---SIGCIRMRN-SDLVEL 145 >gi|213512999|ref|NP_001133929.1| Matrix metalloproteinase-9 [Salmo salar] gi|209155852|gb|ACI34158.1| Matrix metalloproteinase-9 precursor [Salmo salar] Length = 671 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 9/118 (7%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L + + L G ++ A+ Q + GL+ +G Sbjct: 29 TFPGDVLK-NMTDTELAE--SYLKKFGYMNVQHRSGFQSMVSTSKALMTMQRQMGLEETG 85 Query: 156 MVDSSTLEAMNVP--VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN-IPAASLEAVEN 210 +D ST+ AM P +R Q +K + Y ++N P +++ Sbjct: 86 TLDKSTVAAMKAPRCGVPDVRSYQTFEGDLKW---DHHDITYRILNYSPDMVASLIDD 140 >gi|114799549|ref|YP_762022.1| lytic murein transglycosylase [Hyphomonas neptunium ATCC 15444] gi|114739723|gb|ABI77848.1| lytic murein transglycosylase [Hyphomonas neptunium ATCC 15444] Length = 434 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 13/85 (15%) Query: 88 ILSRGG----WPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I +GG WP LP PL + ++ L+ L G + ++A+ Sbjct: 352 IAGKGGPVASWPTHLP--PLTV----ADIRDLQTSLNALGY--DAGTPDGIAGRRTKTAL 403 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 + FQ G G L A+ Sbjct: 404 QNFQKARGFLADGYPTQEMLAAVKA 428 >gi|190890254|ref|YP_001976796.1| hemaglutinin protein [Rhizobium etli CIAT 652] gi|190695533|gb|ACE89618.1| putative hemaglutinin protein [Rhizobium etli CIAT 652] Length = 1253 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 +++ ++ L +G + A +A+K FQ G P G V +T++A+ Sbjct: 1189 AIRNIQAILNNNGF--DAGVPDGEMGAKTVTAIKNFQKSIGQAPDGKVTDATVKALLERN 1246 Query: 170 DLRIRQL 176 + + Sbjct: 1247 KQVAKAI 1253 >gi|213623846|gb|AAI70300.1| Matrix metalloproteinase 21 [Xenopus laevis] gi|213627655|gb|AAI70298.1| Matrix metalloproteinase 21 [Xenopus laevis] Length = 604 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 18/33 (54%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 A+K FQ + L +G +D +T+ AMN P Sbjct: 101 PQFIDALKKFQKLNNLPVTGTLDDATINAMNKP 133 >gi|194217260|ref|XP_001917946.1| PREDICTED: matrix metallopeptidase 28, partial [Equus caballus] Length = 501 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G LD + SA++ FQ L SG++D +TL M P Sbjct: 21 LEKYGYLDEQASRAPT-STQFSSAIREFQWVSQLPVSGVLDPATLRQMMRP 70 >gi|111226115|ref|YP_716909.1| hypothetical protein FRAAL6784 [Frankia alni ACN14a] gi|111153647|emb|CAJ65407.1| hypothetical protein FRAAL6784 [Frankia alni ACN14a] Length = 274 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 13/78 (16%) Query: 101 PLHLGNSSVSVQRLRERLIIS-------GDLDPSKGLSVAFDAYVESAVKLFQM----RH 149 L G V L+ L I GD A+ + V Q Sbjct: 188 TLREGARGADVVELQNALNIVFGHEAPIGD-PNRISPDGAYGPRTTARVASLQRYASPWF 246 Query: 150 G-LDPSGMVDSSTLEAMN 166 G + G+ ++T + Sbjct: 247 GRIPDDGVCGTNTWRKIG 264 >gi|49473830|ref|YP_031872.1| peptidoglycan-binding protein [Bartonella quintana str. Toulouse] gi|49239333|emb|CAF25666.1| Peptidoglycan-binding protein [Bartonella quintana str. Toulouse] Length = 418 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L+ RL G + A+K FQ+ H L+ +G Sbjct: 364 KELQSRLAALGYYKGE--VDGKIGIGSRKAIKAFQLHHSLEANG 405 >gi|307945426|ref|ZP_07660762.1| lytic murein transglycosylase [Roseibium sp. TrichSKD4] gi|307771299|gb|EFO30524.1| lytic murein transglycosylase [Roseibium sp. TrichSKD4] Length = 394 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 2/74 (2%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GG P G + +++L+ +L G + A AV+ Q + GL Sbjct: 323 GGAPVYNKGNPDKGLNDAQMKQLQTKLRAMGY--DVGKIDGILGAGTRGAVQDVQKKLGL 380 Query: 152 DPSGMVDSSTLEAM 165 + L + Sbjct: 381 PADAWPTPTLLNKL 394 >gi|296387479|ref|ZP_06876954.1| lytic murein transglycosylase [Pseudomonas aeruginosa PAb1] Length = 382 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP L PL + S + L+ +L G + A A++ Q G Sbjct: 313 GAWP-LEDVPL---SRSQRI-ELQRQLAARGH--DPGAVDGIIGANTRKAIRACQQEFGW 365 Query: 152 DPSGMVDSSTLEAMNVP 168 G + L+ + P Sbjct: 366 PADGYPTPALLDRLRTP 382 >gi|217972932|ref|YP_002357683.1| lytic murein transglycosylase [Shewanella baltica OS223] gi|217498067|gb|ACK46260.1| lytic murein transglycosylase [Shewanella baltica OS223] Length = 436 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S V++L+ +L +G + ++ FQ Sbjct: 360 NGGLPLTVSPPEQPRLSREQVKQLQAKLNEAGF--DVGKPDGVLGRNSVAGLQAFQRSKQ 417 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 418 MIADGFPSPEVFTALGLS 435 >gi|109127347|ref|XP_001091146.1| PREDICTED: matrix metalloproteinase-25 [Macaca mulatta] Length = 562 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P A + A+K+ Q GL +G +D T+ M P Sbjct: 36 LTRYGYLPPPNPAQAQLQSPAKLRDAIKVMQRFAGLPETGRMDPETVATMRKP 88 >gi|319957198|ref|YP_004168461.1| lytic murein transglycosylase [Nitratifractor salsuginis DSM 16511] gi|319419602|gb|ADV46712.1| lytic murein transglycosylase [Nitratifractor salsuginis DSM 16511] Length = 397 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S +Q L+ L G + AVK Q + GL G L + Sbjct: 340 SGRQIQTLQRLLAKRGY--DVGKIDGIIGEKTRLAVKDLQKKLGLPADGYPTQELLRRLR 397 >gi|260828369|ref|XP_002609136.1| hypothetical protein BRAFLDRAFT_126164 [Branchiostoma floridae] gi|229294490|gb|EEN65146.1| hypothetical protein BRAFLDRAFT_126164 [Branchiostoma floridae] Length = 778 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 D + A++ FQ + L +G++D +T MN P Sbjct: 243 DEEFKEAIRKFQQANNLTITGLLDDATRNKMNEP 276 >gi|319947668|ref|ZP_08021886.1| hypothetical protein ES5_00180 [Dietzia cinnamea P4] gi|319438658|gb|EFV93560.1| hypothetical protein ES5_00180 [Dietzia cinnamea P4] Length = 313 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 14/112 (12%) Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + R+ M P + N I+ ++G++V F R + G Sbjct: 183 TVTRNGQHVRTMRASAGRPGWDTYNGIYYTGQRGRQV--------RMNSETFGLRIEEGG 234 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILF-NNVVRFETSGCVRVRNIIDLDVW 355 N++ + + + Y+H P + VR + GC+ V D W Sbjct: 235 YNSIVNDAVRLSY-DGIYIH--SAPWSVADQGVRNVSHGCINVS-PED-ARW 281 >gi|297184320|gb|ADI20437.1| membrane-bound lytic murein transglycosylase b [uncultured alpha proteobacterium EB080_L43F08] Length = 410 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 7/74 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP P L L+ L G +A++ FQ+ GL P Sbjct: 342 WPRGP-GALKF----KEKVELQNLLNKLGYEVGEA--DGIIGPNSIAAIRKFQISVGLIP 394 Query: 154 SGMVDSSTLEAMNV 167 GM + L M Sbjct: 395 DGMSNKDLLLKMQK 408 >gi|298527994|ref|ZP_07015398.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511646|gb|EFI35548.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] Length = 412 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + RL G L + + +E A+K+FQ GL+PSG + T + + Sbjct: 358 IASRLHELGFLKNA---DNKCEEKLEEALKIFQHTRGLNPSGQWSAETQKKL 406 >gi|114769612|ref|ZP_01447222.1| Membrane bound lytic murein transglycosylase B [alpha proteobacterium HTCC2255] gi|114549317|gb|EAU52199.1| Membrane bound lytic murein transglycosylase B [alpha proteobacterium HTCC2255] Length = 410 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 7/74 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP P L L+ L G +A++ FQ+ GL P Sbjct: 342 WPRGP-GALKF----KEKVELQNLLNKLGYEVGEA--DGIIGPNSIAAIRKFQISVGLIP 394 Query: 154 SGMVDSSTLEAMNV 167 GM + L M Sbjct: 395 DGMSNKDLLLKMQK 408 >gi|313901337|ref|ZP_07834824.1| peptidase, S41 family [Clostridium sp. HGF2] gi|312953945|gb|EFR35626.1| peptidase, S41 family [Clostridium sp. HGF2] Length = 493 Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 2/81 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L S + + + L G F A+K +Q G+ + Sbjct: 396 PVLKKEVYKPDTVSAAAKSAQIYLKFLGY--AVDRTDEYFSYASGEALKQYQKDKGMKVT 453 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G +D+ TL ++ L+ Sbjct: 454 GNIDADTLTSLLSSCALKWHS 474 >gi|118588870|ref|ZP_01546278.1| hypothetical protein SIAM614_19229 [Stappia aggregata IAM 12614] gi|118438856|gb|EAV45489.1| hypothetical protein SIAM614_19229 [Stappia aggregata IAM 12614] Length = 152 Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 316 YSRNNTY------MHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTPTWSRYH 367 + + +H T + + R + GCVR+ N L + K +R Sbjct: 93 PMPYSIFFLGGYAIHGTTD---LKRLGRPASHGCVRLHPKNAAHLYNLVRKVGRAETRIV 149 Query: 368 I 368 I Sbjct: 150 I 150 >gi|224367795|ref|YP_002601958.1| putative general secretion pathway protein A [Desulfobacterium autotrophicum HRM2] gi|223690511|gb|ACN13794.1| putative general secretion pathway protein A [Desulfobacterium autotrophicum HRM2] Length = 581 Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 2/55 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + L+ L G + +D V+ A+ Q +G+ G+ T Sbjct: 508 GSQIINLKLLLKAIGFQGINLTAD--YDDRVKQAIIEIQSENGITVDGLAGPMTR 560 >gi|167755026|ref|ZP_02427153.1| hypothetical protein CLORAM_00530 [Clostridium ramosum DSM 1402] gi|237735249|ref|ZP_04565730.1| carboxy-terminal processing proteinase [Mollicutes bacterium D7] gi|167705076|gb|EDS19655.1| hypothetical protein CLORAM_00530 [Clostridium ramosum DSM 1402] gi|229380994|gb|EEO31085.1| carboxy-terminal processing proteinase [Coprobacillus sp. D7] Length = 485 Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ +++ L I G F A+K F+ + L G+ Sbjct: 405 GTAIASMQKMLSILGY--DCGRNDGYFSQQSVEALKQFEQANNLTVDGIYT 453 >gi|332687298|ref|YP_004457071.1| hypothetical protein MPTP_1868 [Melissococcus plutonius ATCC 35311] gi|332371307|dbj|BAK22262.1| hypothetical protein MPTP_1868 [Melissococcus plutonius ATCC 35311] Length = 725 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 21/41 (51%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S+ L + + + AV+ FQ GL P G + + ++A+ Sbjct: 100 SGSEALDGMYTKFTKEAVEKFQKMAGLSPDGYLSTMLMKAL 140 >gi|268571949|ref|XP_002641192.1| C. briggsae CBR-ZMP-1 protein [Caenorhabditis briggsae] Length = 451 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L G + + A+K Q GL+ +G +D T M P Sbjct: 28 LQKYGYLPR--GSNQLSSTSLSEALKNMQRMAGLEETGELDERTKRMMERP 76 >gi|254487251|ref|ZP_05100456.1| peptidoglycan binding domain protein [Roseobacter sp. GAI101] gi|214044120|gb|EEB84758.1| peptidoglycan binding domain protein [Roseobacter sp. GAI101] Length = 404 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 9/93 (9%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + IA + I WP + R L + L+ RL G + + Sbjct: 319 VGHLSDRIAGGRPIEQS--WP-VQDRALTF---DERI-ELQTRLTALGF--DTVKIDAKI 369 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +AV+ FQ G P G L+ + Sbjct: 370 GPLTINAVRRFQEAQGYLPDGYASLRLLDRVRA 402 >gi|209550890|ref|YP_002282807.1| lytic murein transglycosylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536646|gb|ACI56581.1| lytic murein transglycosylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 407 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 11/85 (12%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I GG WP P L + L+ RL G + + F + ++A+ Sbjct: 330 QIAGYGGMQQRWPR-PDGALDI----TEKFELQTRLKTLGYY--NGEVDGNFGSGSKAAI 382 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 Q R G+ P G L A+ Sbjct: 383 SAVQSRIGMQPDGEPSLPLLNALRR 407 >gi|75907904|ref|YP_322200.1| OpcA protein [Anabaena variabilis ATCC 29413] gi|75701629|gb|ABA21305.1| OpcA [Anabaena variabilis ATCC 29413] Length = 458 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L G + + E+A++ Q+++ L +G TL + R Sbjct: 65 LASLGFY--NGPIDGILGPQTETALRQVQIKYALPETGTATPETLAKLREEFVKR 117 >gi|4505213|ref|NP_002420.1| matrix metalloproteinase-19 isoform rasi-1 preproprotein [Homo sapiens] gi|12643345|sp|Q99542|MMP19_HUMAN RecName: Full=Matrix metalloproteinase-19; Short=MMP-19; AltName: Full=Matrix metalloproteinase RASI; AltName: Full=Matrix metalloproteinase-18; Short=MMP-18; Flags: Precursor gi|1731986|emb|CAA63299.1| MMP-19 (matrix metalloproteinase) [Homo sapiens] gi|2228244|gb|AAB63008.1| matrix metalloproteinase RASI-1 [Homo sapiens] gi|2253587|gb|AAC51521.1| matrix metalloproteinase RASI-1 [Homo sapiens] gi|29791916|gb|AAH50368.1| Matrix metallopeptidase 19 [Homo sapiens] gi|51234137|gb|AAT97983.1| matrix metalloproteinase 19 [Homo sapiens] gi|312153168|gb|ADQ33096.1| matrix metallopeptidase 19 [synthetic construct] Length = 508 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F + A++ FQ L SG +D +T M P Sbjct: 32 LSQYGYLQKPLEGSNNFKPEDITEALRAFQEASELPVSGQLDDATRARMRQP 83 >gi|1702930|emb|CAA69913.1| matrix metalloproteinase [Homo sapiens] Length = 508 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F + A++ FQ L SG +D +T M P Sbjct: 32 LSQYGYLQKPLEGSNNFKPEDITEALRAFQEASELPVSGQLDDATRARMRQP 83 >gi|23006315|ref|ZP_00048690.1| COG3409: Putative peptidoglycan-binding domain-containing protein [Magnetospirillum magnetotacticum MS-1] Length = 78 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V R++ L G ++A++ F+ L G TL A+ Sbjct: 11 DPTVIRVQRALAKLGY--GPLKDDGLMGPGTKAAIEKFERDRKLPVKGEAAGPTLRALTR 68 Query: 168 PVDLRI 173 + + Sbjct: 69 EMTAKA 74 >gi|315125333|ref|YP_004067336.1| hypothetical protein PSM_A0229 [Pseudoalteromonas sp. SM9913] gi|315013846|gb|ADT67184.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913] Length = 376 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 115 RERLIISGDLDPSK------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 R L+ G L V +D A++ +Q L +G+ D +T ++++ Sbjct: 296 RMNLVCLGYLKNQPNYEEFETEDVKYDRQTVLALREYQQEKSLKVTGLADETTKKSLDDS 355 >gi|269126835|ref|YP_003300205.1| ErfK/YbiS/YcfS/YnhG family protein [Thermomonospora curvata DSM 43183] gi|268311793|gb|ACY98167.1| ErfK/YbiS/YcfS/YnhG family protein [Thermomonospora curvata DSM 43183] Length = 411 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 31/195 (15%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + G+ V + +T + ++N I ++ YL Sbjct: 230 DFGRKFRIGDAHVSIANAKTKQMVVKVNGKTVKK-----TPISAGKGGRVVNGVDTYLTT 284 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS-----RNNTYM 323 + IH+ K V +W +P + A + + Y+ Sbjct: 285 SGIHLTMSK-HRVERMTSEWMGVDPKDK----------ANGGYDLLLPHAVRISSSGEYV 333 Query: 324 HDTPEP-ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 H +P+ F V + GC+ W T V+ T T + Sbjct: 334 HASPDRYWAFGRVN--ASHGCI--NTPPPFAEWFYNLTYRGDI-----VIVTGTTRRLPW 384 Query: 383 ATEVPVHFVYISAWS 397 + + S W Sbjct: 385 NNGWSYYEMPWSQWV 399 >gi|261419216|ref|YP_003252898.1| peptidoglycan-binding protein [Geobacillus sp. Y412MC61] gi|297530814|ref|YP_003672089.1| peptidoglycan-binding protein [Geobacillus sp. C56-T3] gi|319766032|ref|YP_004131533.1| peptidoglycan-binding protein [Geobacillus sp. Y412MC52] gi|261375673|gb|ACX78416.1| Peptidoglycan-binding domain 1 protein [Geobacillus sp. Y412MC61] gi|297254066|gb|ADI27512.1| Peptidoglycan-binding domain 1 protein [Geobacillus sp. C56-T3] gi|317110898|gb|ADU93390.1| Peptidoglycan-binding domain 1 protein [Geobacillus sp. Y412MC52] Length = 168 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 6/58 (10%) Query: 111 VQRLRERLIIS--GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V ++ L + G + + + + V FQ G+ G+V T E Sbjct: 51 VLAIQRMLKDTPWGY----SAVDGYWGSKTYNGVVNFQRNEGIAADGIVGPVTWEEFE 104 >gi|71908465|ref|YP_286052.1| hypothetical protein Daro_2852 [Dechloromonas aromatica RCB] gi|71848086|gb|AAZ47582.1| hypothetical protein Daro_2852 [Dechloromonas aromatica RCB] Length = 335 Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Query: 117 RLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL+ G + F + +K FQ GL +G+ L + Sbjct: 283 RLLQLGMSGRGVAIKADGIFGQTSVNLLKRFQASQGLPANGIATPQQLSEL 333 >gi|330891787|gb|EGH24448.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. mori str. 301020] Length = 413 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G A +A++ +Q L P G + LE++ Sbjct: 357 AQVTDLQKLLTAKGY--SLGTADGVIGAMTRAAIRAYQKDQHLPPDGYASTVLLESLRR 413 >gi|222147979|ref|YP_002548936.1| hypothetical protein Avi_1306 [Agrobacterium vitis S4] gi|221734967|gb|ACM35930.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 374 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + ++ +LI G D + ++A+ +Q R G+ +G L AM+ Sbjct: 133 TDPLTASIQAQLIRLGLYDGAA--DGKRGPRTDAAISAYQRRIGMSVTGAPSDDLLAAMS 190 Query: 167 VPVDLRI 173 V Sbjct: 191 VDQKSPA 197 >gi|217979650|ref|YP_002363797.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylocella silvestris BL2] gi|217505026|gb|ACK52435.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylocella silvestris BL2] Length = 255 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSSTLEA 164 + V+ L+ L G +S A+DA + ++ FQ G+ D ST+ Sbjct: 188 SRGAEVEELQAMLGAYGY---GAPVSGAYDARTQCVIRAFQRHFRPALVDGIADFSTVAT 244 Query: 165 MNVPVDLR 172 + + +R Sbjct: 245 LRKLLAMR 252 >gi|328724693|ref|XP_003248223.1| PREDICTED: matrix metalloproteinase-16-like isoform 2 [Acyrthosiphon pisum] Length = 557 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 15/82 (18%) Query: 118 LIISGDLDPSKGLSV----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L PS + + A+ FQ GL+ +G +D TL M++P Sbjct: 38 LSQFGYLSPSMKNPNSGHIMSEETMARALMEFQSFVGLNLTGHLDDETLHYMSMPRCGVR 97 Query: 169 ------VDLRIRQLQVNLMRIK 184 D R R+ + R + Sbjct: 98 DKVGFATDSRSRRYALQGSRWR 119 >gi|156349373|ref|XP_001622031.1| hypothetical protein NEMVEDRAFT_v1g142824 [Nematostella vectensis] gi|156208428|gb|EDO29931.1| predicted protein [Nematostella vectensis] Length = 216 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 22/34 (64%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + VE+A+K FQ GL+ +G +D +T+ M +P Sbjct: 11 NQDVETAIKNFQRFAGLEVTGELDDATIAQMKMP 44 >gi|301752966|ref|XP_002912340.1| PREDICTED: matrix metalloproteinase-15-like [Ailuropoda melanoleuca] Length = 648 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T M P D Sbjct: 45 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 104 Query: 172 RIRQLQVNLMRIK 184 ++ NL R + Sbjct: 105 FGVHVKANLRRRR 117 >gi|255264816|ref|ZP_05344158.1| lytic murein transglycosylase [Thalassiobium sp. R2A62] gi|255107151|gb|EET49825.1| lytic murein transglycosylase [Thalassiobium sp. R2A62] Length = 369 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++ L G + F E+A++ FQ + G +G +S + A+ Sbjct: 318 AVQRGLERRGY--DIGTIDGVFGKKTEAAIRDFQQKQGFPVTGAASASLVSALR 369 >gi|218509677|ref|ZP_03507555.1| probable membrane-bound lytic murein transglycosylase protein [Rhizobium etli Brasil 5] Length = 71 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G ++ ++ L+ +L G + + A++ Q R G+ Sbjct: 1 GAPSYLKGAPEPGLANDQMKTLQTKLQSLGH--DVGEIDGILGSGTRIAIQKEQQRLGIP 58 Query: 153 PSGMVDSSTLEAM 165 G + L A+ Sbjct: 59 ADGWATPALLNAL 71 >gi|148255394|ref|YP_001239979.1| putative membrane-bound lytic transglycosylase protein signal peptide [Bradyrhizobium sp. BTAi1] gi|146407567|gb|ABQ36073.1| Putative membrane-bound lytic transglycosylase precursor protein, putative signal peptide [Bradyrhizobium sp. BTAi1] Length = 406 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNV 167 VQ +++RL +G + G A++ FQ + GL G L + Sbjct: 347 AEVQEMQKRLTAAGF--DTGGTDGRVGNDTMKAIRDFQAKAGLTPADGYGGLKVLAKLRQ 404 >gi|297272408|ref|XP_002800423.1| PREDICTED: matrix metalloproteinase-28 isoform 2 [Macaca mulatta] Length = 510 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G LR+ L G L+ P S F A++ FQ Sbjct: 17 WDRLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|30061802|ref|NP_835973.1| IS629 orfB [Shigella flexneri 2a str. 2457T] gi|30040044|gb|AAP15778.1| IS629 orfB [Shigella flexneri 2a str. 2457T] Length = 215 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 15/121 (12%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLR--ERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + W P +H + L +RL +G L + ++D + ++ Sbjct: 98 EQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESI----- 152 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 +GL + ++ + + R L + +++ R + A Sbjct: 153 -NGLYKAKVIHRKSWK-------NRAEVELATLTWVDWYNNRRLPERLGHIPPAEAEKAY 204 Query: 208 V 208 Sbjct: 205 Y 205 >gi|84685464|ref|ZP_01013362.1| hypothetical protein 1099457000258_RB2654_11363 [Maritimibacter alkaliphilus HTCC2654] gi|84666621|gb|EAQ13093.1| hypothetical protein RB2654_11363 [Rhodobacterales bacterium HTCC2654] Length = 397 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G SS ++ L+++L G + + +AV+ Q+R GL Sbjct: 327 GAPVYDAGNPEPGLSSGQMKALQQKLQARGH--DVGKIDGILGSGTRAAVQAEQVRLGLP 384 Query: 153 PSGMVDSSTLEAM 165 ++ L A+ Sbjct: 385 ADAWPTAALLNAL 397 >gi|71734551|ref|YP_273050.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555104|gb|AAZ34315.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. phaseolicola 1448A] Length = 413 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G A +A++ +Q L P G + LE++ Sbjct: 357 AQVTDLQKLLTAKGY--SLGTADGVIGAMTRAAIRAYQKDQHLPPDGYASTVLLESLRR 413 >gi|170078482|ref|YP_001735120.1| bacteriophage endolysin [Synechococcus sp. PCC 7002] gi|169886151|gb|ACA99864.1| bacteriophage endolysin with peptidoglycan binding domain [Synechococcus sp. PCC 7002] Length = 202 Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + V+ ++++ G S + + E + Q + GL+ G++ T Sbjct: 136 RPYMAGHDVREWQKQVNFWG---ISIEIDGIYGPESEKVCRTLQEKWGLEVDGVIGPITW 192 Query: 163 EAMNVPVDL 171 E P Sbjct: 193 ERTFKPSRE 201 >gi|327193899|gb|EGE60774.1| putative peptidoglycan binding (cell wall degradation) protein [Rhizobium etli CNPAF512] Length = 318 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V ++++L+ G + +A+ FQ G+ +G L A+ Sbjct: 147 VMGIQQQLVRRGLY--NGIPDGIIGPRTSAAILFFQETVGMAQTGEATPEVLAALKTDAA 204 >gi|255552738|ref|XP_002517412.1| Matrix metalloproteinase, putative [Ricinus communis] gi|223543423|gb|EEF44954.1| Matrix metalloproteinase, putative [Ricinus communis] Length = 321 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLS-------VAFDAYVESAVKLFQMRHGLDPSGMV 157 G+ V L++ L G L +K S FD +ESA++ +Q+ + L+ SG++ Sbjct: 47 GDKLKGVGELKKYLKHFGYLSYNKNQSHANEDDDDDFDDPLESAIRTYQLNYHLNVSGLL 106 Query: 158 DSSTLEAMNVP 168 DS T M +P Sbjct: 107 DSETASKMMMP 117 >gi|328544565|ref|YP_004304674.1| peptidoglycan binding domain protein [polymorphum gilvum SL003B-26A1] gi|326414307|gb|ADZ71370.1| Putative peptidoglycan binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 229 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 S V ++ L G L E AV+ ++++ GL +G ++ L + + Sbjct: 69 SALVLDIQTELRRLGLY--EGLLDGLVGPATERAVRRYELQAGLPETGEATAALLARLTM 126 Query: 168 PVD 170 D Sbjct: 127 EPD 129 Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + R+++ L G SA++ F++ GL +G V+ + +E + Sbjct: 162 AQDRLLMRVQQVLSDLGYGPLRA--DGLMGDNTASAIQRFELDRGLPITGRVNPTLVERL 219 Query: 166 NV 167 Sbjct: 220 EQ 221 >gi|260566048|ref|ZP_05836518.1| LOW QUALITY PROTEIN: lytic murein transglycosylase [Brucella suis bv. 4 str. 40] gi|261752738|ref|ZP_05996447.1| LOW QUALITY PROTEIN: lytic Murein transglycosylase [Brucella suis bv. 5 str. 513] gi|261755398|ref|ZP_05999107.1| LOW QUALITY PROTEIN: lytic Murein transglycosylase [Brucella suis bv. 3 str. 686] gi|260155566|gb|EEW90646.1| LOW QUALITY PROTEIN: lytic murein transglycosylase [Brucella suis bv. 4 str. 40] gi|261742491|gb|EEY30417.1| LOW QUALITY PROTEIN: lytic Murein transglycosylase [Brucella suis bv. 5 str. 513] gi|261745151|gb|EEY33077.1| LOW QUALITY PROTEIN: lytic Murein transglycosylase [Brucella suis bv. 3 str. 686] Length = 267 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + ++ L+ +L G + F AV+ Q+R G+ Sbjct: 197 GAPAFDPGTPVPGLTQDQLKELQTKLQARGY--EMGKIDGVFGVATRDAVRSEQLRLGMP 254 Query: 153 PSGMVDSSTLEAM 165 L+ + Sbjct: 255 ADSWPTQELLDRL 267 >gi|254385315|ref|ZP_05000644.1| phage protein [Streptomyces sp. Mg1] gi|194344189|gb|EDX25155.1| phage protein [Streptomyces sp. Mg1] Length = 414 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 4/78 (5%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G + + G + SV+ ++ L LD F ++AV FQ + GL Sbjct: 167 GDVTVTATDVVFGARNTSVRIVQAALAAEVGLD-YASAPGTFGPRTKAAVAAFQRKLGLT 225 Query: 153 P---SGMVDSSTLEAMNV 167 G +L + Sbjct: 226 DGDADGAFGRFSLTELGR 243 >gi|157644751|gb|ABV59081.1| type III effector HopAJ1 [Pseudomonas syringae pv. averrhoi] Length = 413 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G A +A++ +Q L P G + LE++ Sbjct: 357 AQVTDLQKLLTAKGY--SLGTADGVIGAMTRAAIRAYQKDQHLPPDGYASTVLLESLRR 413 >gi|115377348|ref|ZP_01464555.1| ErfK/YbiS/YcfS/YnhG family protein, putative [Stigmatella aurantiaca DW4/3-1] gi|115365668|gb|EAU64696.1| ErfK/YbiS/YcfS/YnhG family protein, putative [Stigmatella aurantiaca DW4/3-1] Length = 516 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 52/170 (30%), Gaps = 19/170 (11%) Query: 155 GMVDSSTL----------EAMNVPVDLRIRQLQVNLMRIKK---LLEQKMGLRYVLVNIP 201 G++ T+ + + + + NL R++ L + R++ V++ Sbjct: 312 GVLAPRTVVALQEFSGDGQWARLAPEQWVA--VENLHRLRAAPALPDLLPEERWLDVDLT 369 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI--NRIMFNPYWVIPRSIIQKDMMALL 259 L A E K + + G+ +TP RI + RS + + Sbjct: 370 EQVLVAYEGVKPVYATLISSGKPLHETPTGIFRIWLKSSEADMTGAEGRSRYRVATVPWT 429 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 + + D G+ V ++ + + G + Sbjct: 430 MFFQGNFALHTAYWHDRWGEPVSHGCINLSPRDARALYRW--SGPEVPLG 477 >gi|23501467|ref|NP_697594.1| peptidoglycan-binding protein [Brucella suis 1330] gi|82699474|ref|YP_414048.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|148560514|ref|YP_001258575.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|161618553|ref|YP_001592440.1| peptidoglycan binding domain-containing protein [Brucella canis ATCC 23365] gi|189023802|ref|YP_001934570.1| peptidoglycan binding domain 1 [Brucella abortus S19] gi|225627085|ref|ZP_03785123.1| peptidoglycan-binding protein [Brucella ceti str. Cudo] gi|225852107|ref|YP_002732340.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|254688863|ref|ZP_05152117.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|254696994|ref|ZP_05158822.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701373|ref|ZP_05163201.1| Peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|254703918|ref|ZP_05165746.1| Peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|254707706|ref|ZP_05169534.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|254709711|ref|ZP_05171522.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|254712866|ref|ZP_05174677.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|254716780|ref|ZP_05178591.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|254729895|ref|ZP_05188473.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|256031202|ref|ZP_05444816.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|256044287|ref|ZP_05447191.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060710|ref|ZP_05450874.1| Peptidoglycan-binding domain 1 protein [Brucella neotomae 5K33] gi|256113120|ref|ZP_05453997.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 3 str. Ether] gi|256159300|ref|ZP_05457095.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] gi|256254610|ref|ZP_05460146.1| Peptidoglycan-binding domain 1 protein [Brucella ceti B1/94] gi|256257111|ref|ZP_05462647.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 9 str. C68] gi|256369017|ref|YP_003106525.1| peptidoglycan-binding protein, putative [Brucella microti CCM 4915] gi|260168338|ref|ZP_05755149.1| peptidoglycan-binding protein, putative [Brucella sp. F5/99] gi|260754347|ref|ZP_05866695.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|260757566|ref|ZP_05869914.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260761391|ref|ZP_05873734.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883372|ref|ZP_05894986.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261218577|ref|ZP_05932858.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261221785|ref|ZP_05936066.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|261315200|ref|ZP_05954397.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261317243|ref|ZP_05956440.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|261320574|ref|ZP_05959771.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261324701|ref|ZP_05963898.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|261751911|ref|ZP_05995620.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261754569|ref|ZP_05998278.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|265988282|ref|ZP_06100839.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|265990698|ref|ZP_06103255.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994530|ref|ZP_06107087.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265997749|ref|ZP_06110306.1| peptidoglycan binding domain-containing protein [Brucella ceti M490/95/1] gi|297247958|ref|ZP_06931676.1| peptidoglycan-binding protein [Brucella abortus bv. 5 str. B3196] gi|23347371|gb|AAN29509.1| peptidoglycan-binding protein, putative [Brucella suis 1330] gi|82615575|emb|CAJ10558.1| Putative peptidoglycan binding domain 1 [Brucella melitensis biovar Abortus 2308] gi|148371771|gb|ABQ61750.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|161335364|gb|ABX61669.1| Peptidoglycan-binding domain 1 protein [Brucella canis ATCC 23365] gi|189019374|gb|ACD72096.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19] gi|225617920|gb|EEH14964.1| peptidoglycan-binding protein [Brucella ceti str. Cudo] gi|225640472|gb|ACO00386.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|255999177|gb|ACU47576.1| peptidoglycan-binding protein, putative [Brucella microti CCM 4915] gi|260667884|gb|EEX54824.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260671823|gb|EEX58644.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674455|gb|EEX61276.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|260872900|gb|EEX79969.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260920369|gb|EEX87022.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|260923666|gb|EEX90234.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261293264|gb|EEX96760.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261296466|gb|EEX99962.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|261300681|gb|EEY04178.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|261304226|gb|EEY07723.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261741664|gb|EEY29590.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261744322|gb|EEY32248.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|262552217|gb|EEZ08207.1| peptidoglycan binding domain-containing protein [Brucella ceti M490/95/1] gi|262765643|gb|EEZ11432.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263001482|gb|EEZ14057.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|264660479|gb|EEZ30740.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|297175127|gb|EFH34474.1| peptidoglycan-binding protein [Brucella abortus bv. 5 str. B3196] Length = 338 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 275 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 332 >gi|328724691|ref|XP_001949484.2| PREDICTED: matrix metalloproteinase-16-like isoform 1 [Acyrthosiphon pisum] Length = 547 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 15/82 (18%) Query: 118 LIISGDLDPSKGLSV----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L PS + + A+ FQ GL+ +G +D TL M++P Sbjct: 38 LSQFGYLSPSMKNPNSGHIMSEETMARALMEFQSFVGLNLTGHLDDETLHYMSMPRCGVR 97 Query: 169 ------VDLRIRQLQVNLMRIK 184 D R R+ + R + Sbjct: 98 DKVGFATDSRSRRYALQGSRWR 119 >gi|187935651|ref|YP_001884915.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum B str. Eklund 17B] gi|187723804|gb|ACD25025.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum B str. Eklund 17B] Length = 412 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 11/90 (12%) Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD------PGKINAMASTKIEFYSR 318 + N ++ + ++Q PG + + S + F Sbjct: 304 WFYKNGYLVVQSDIVTGNMSAGYATPSGTYKLYYKQKDTVLRGPGYASPV-SFWMPFNG- 361 Query: 319 NNTYMHDTPEPILFN--NVVRFETSGCVRV 346 +HD F + GC+ + Sbjct: 362 -GIGLHDANWRSEFGGEIYKNGGSHGCINL 390 >gi|146340537|ref|YP_001205585.1| putative membrane-bound lytic transglycosylase protein signal peptide [Bradyrhizobium sp. ORS278] gi|146193343|emb|CAL77359.1| Putative membrane-bound lytic transglycosylase precursor protein, putative signal peptide [Bradyrhizobium sp. ORS278] Length = 406 Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNV 167 VQ +++RL +G + G A++ FQ + GL G L + Sbjct: 347 AEVQEMQKRLTAAGF--ATGGTDGRVGNDTMKAIRDFQAKAGLTPADGYGGLKVLTKLRQ 404 >gi|310824581|ref|YP_003956939.1| ErfK/YbiS/YcfS/YnhG family protein [Stigmatella aurantiaca DW4/3-1] gi|309397653|gb|ADO75112.1| ErfK/YbiS/YcfS/YnhG family protein [Stigmatella aurantiaca DW4/3-1] Length = 489 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 52/170 (30%), Gaps = 19/170 (11%) Query: 155 GMVDSSTL----------EAMNVPVDLRIRQLQVNLMRIKK---LLEQKMGLRYVLVNIP 201 G++ T+ + + + + NL R++ L + R++ V++ Sbjct: 285 GVLAPRTVVALQEFSGDGQWARLAPEQWVA--VENLHRLRAAPALPDLLPEERWLDVDLT 342 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI--NRIMFNPYWVIPRSIIQKDMMALL 259 L A E K + + G+ +TP RI + RS + + Sbjct: 343 EQVLVAYEGVKPVYATLISSGKPLHETPTGIFRIWLKSSEADMTGAEGRSRYRVATVPWT 402 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 + + D G+ V ++ + + G + Sbjct: 403 MFFQGNFALHTAYWHDRWGEPVSHGCINLSPRDARALYRW--SGPEVPLG 450 >gi|237654230|ref|YP_002890544.1| peptidoglycan-binding protein [Thauera sp. MZ1T] gi|237625477|gb|ACR02167.1| Peptidoglycan-binding domain 1 protein [Thauera sp. MZ1T] Length = 380 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 31/145 (21%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD---ILSRGGWP-------------EL 97 A +D + + + A + + + ++ +G W + Sbjct: 236 GEQAWIDAYVRTRRAWLEGHARADLRQTVYRMEAFGRLIDQGFWGLEMPLVVRGREISSV 295 Query: 98 PIRPLHLG-----NSSVSVQRLRE--------RLIISGDLDPSKGL--SVAFDAYVESAV 142 + L G L RL+ G D + F + + Sbjct: 296 TLAALPPGCYDGPQPGSRPLTLATPLARGLDVRLLQLGLSDRGVDILADGIFGRTSFNLL 355 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 K +Q +HGL +G+ D + + + Sbjct: 356 KAWQAQHGLAATGIADPALIGELTA 380 >gi|306845192|ref|ZP_07477768.1| peptidoglycan binding domain-containing protein [Brucella sp. BO1] gi|306274351|gb|EFM56158.1| peptidoglycan binding domain-containing protein [Brucella sp. BO1] Length = 338 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 275 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 332 >gi|281346656|gb|EFB22240.1| hypothetical protein PANDA_000051 [Ailuropoda melanoleuca] Length = 617 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T M P D Sbjct: 4 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 63 Query: 172 RIRQLQVNLMRIK 184 ++ NL R + Sbjct: 64 FGVHVKANLRRRR 76 >gi|254693344|ref|ZP_05155172.1| Peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|261213593|ref|ZP_05927874.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|260915200|gb|EEX82061.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] Length = 338 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 275 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 332 >gi|163842856|ref|YP_001627260.1| peptidoglycan binding domain-containing protein [Brucella suis ATCC 23445] gi|163673579|gb|ABY37690.1| Peptidoglycan-binding domain 1 protein [Brucella suis ATCC 23445] Length = 338 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 275 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 332 >gi|116253819|ref|YP_769657.1| peptidoglycan binding protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258467|emb|CAK09571.1| putative peptidoglycan binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 407 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 11/85 (12%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I GG WP P L + L+ RL G + + F + ++A+ Sbjct: 330 QIAGYGGVLQRWPR-PDGALDI----TEKFELQTRLKTLGYY--NGEVDGNFGSGSKAAI 382 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 Q R G+ P G L A+ Sbjct: 383 SAVQSRIGMQPDGEPSLPLLNALRR 407 >gi|297272410|ref|XP_001114445.2| PREDICTED: matrix metalloproteinase-28 isoform 1 [Macaca mulatta] Length = 520 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G LR+ L G L+ P S F A++ FQ Sbjct: 17 WDRLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|294853408|ref|ZP_06794080.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026] gi|294819063|gb|EFG36063.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026] Length = 978 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +V+ ++ L +G + DA +A+ FQ +G +P+G V+ ++ Sbjct: 920 AVRNIQLILQKNGY--DTGTADGMMDAKTRTAISAFQKANGQEPTGEVNQKLVQ 971 >gi|66814378|ref|XP_641368.1| hypothetical protein DDB_G0280311 [Dictyostelium discoideum AX4] gi|60469388|gb|EAL67382.1| hypothetical protein DDB_G0280311 [Dictyostelium discoideum AX4] Length = 1084 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 15/36 (41%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 V+ L+ L L + +D +A+K FQ Sbjct: 474 VKELQAALSHLNYLPLLTKIDGCYDQKTINALKAFQ 509 >gi|325126435|gb|ADY85765.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 211 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 37/157 (23%), Gaps = 14/157 (8%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVD--LRIRQLQVNLMRIKK-----LLEQKMGL 193 AV+ FQ H L +G VD T + + +I L +E + Sbjct: 20 AVRRFQASHHLKVTGNVDQKTWTKLGLGKKLFKQIDSYTAPLGAQAWEGRKAHIEAMIRQ 79 Query: 194 RYVLVNIP--AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 Y + P S G + +P+ S I W Sbjct: 80 AYKYMGHPYLVGSSSMTRYGTDCSGLIIQSLYAGGISPVPVSAIGHAHPGNEWN-----S 134 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + + Y + W Sbjct: 135 RNLWADKKLKRVSYASRRRGATWSSTTSQAPGLSGTW 171 >gi|157110203|ref|XP_001650998.1| hypothetical protein AaeL_AAEL000790 [Aedes aegypti] gi|108883949|gb|EAT48174.1| conserved hypothetical protein [Aedes aegypti] Length = 102 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L S + ++ AV+LFQ LDP+G +D TLE M +P Sbjct: 3 LMEFGYLPKSNIETGNLRTMEQLQEAVRLFQNFANLDPTGKIDQDTLELMRMP 55 >gi|254718729|ref|ZP_05180540.1| Peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|265983705|ref|ZP_06096440.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|306838707|ref|ZP_07471542.1| peptidoglycan binding domain-containing protein [Brucella sp. NF 2653] gi|264662297|gb|EEZ32558.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|306406194|gb|EFM62438.1| peptidoglycan binding domain-containing protein [Brucella sp. NF 2653] Length = 338 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 275 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 332 >gi|150395374|ref|YP_001325841.1| peptidoglycan binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150026889|gb|ABR59006.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium medicae WSM419] Length = 1226 Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W P + + + +V+ ++ L +G + +A+K FQ G +P Sbjct: 1153 WIGPPTKTATVDMT-RAVRNIQAILNKNGF--DAGTPDGRVGNKTTAAIKAFQKTVGQEP 1209 Query: 154 SGMVDSSTLEAM 165 +G + + + + Sbjct: 1210 TGEITDALVREL 1221 >gi|109082872|ref|XP_001100232.1| PREDICTED: matrix metalloproteinase-14-like [Macaca mulatta] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|4126377|dbj|BAA36551.1| Membrane-type matrix metalloproteinase-1 [Capra hircus] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|804994|emb|CAA58519.1| MT-MMP [Homo sapiens] gi|40675475|gb|AAH64803.1| Matrix metallopeptidase 14 (membrane-inserted) [Homo sapiens] gi|54781371|gb|AAV40837.1| matrix metalloproteinase 14 (membrane-inserted) [Homo sapiens] gi|158256086|dbj|BAF84014.1| unnamed protein product [Homo sapiens] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|332222943|ref|XP_003260629.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-14-like [Nomascus leucogenys] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|793763|dbj|BAA05519.1| membrane-type matrix metalloproteinase [Homo sapiens] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|4826834|ref|NP_004986.1| matrix metalloproteinase-14 preproprotein [Homo sapiens] gi|317373419|sp|P50281|MMP14_HUMAN RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=MMP-X1; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|963054|emb|CAA88372.1| membrane-type matrix metalloproteinase 1 [Homo sapiens] gi|1127837|gb|AAA83770.1| membrane-type matrix metalloproteinase-1 [Homo sapiens] gi|119586641|gb|EAW66237.1| matrix metallopeptidase 14 (membrane-inserted), isoform CRA_b [Homo sapiens] gi|168277826|dbj|BAG10891.1| matrix metalloproteinase-14 precursor [synthetic construct] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|297517138|ref|ZP_06935524.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli OP50] Length = 171 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLR 260 I Q+ + ++ Sbjct: 148 TPTAGIRQRSLERGIK 163 >gi|296483589|gb|DAA25704.1| matrix metalloproteinase-14 precursor [Bos taurus] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|294676544|ref|YP_003577159.1| lysozyme [Rhodobacter capsulatus SB 1003] gi|294475364|gb|ADE84752.1| lysozyme [Rhodobacter capsulatus SB 1003] Length = 309 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQV 178 ++ FQ HGL G + +TL + + + + + Sbjct: 199 IRRFQADHGLTIDGKIGRATLSTLQRRLDAAEKAKPVAL 237 >gi|291390212|ref|XP_002711594.1| PREDICTED: matrix metalloproteinase 15 [Oryctolagus cuniculus] Length = 668 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 7/109 (6%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T M P D Sbjct: 50 LRLYGYLPQPSRHMSTLRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 109 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 ++ NL R +K G ++ ++ + E + Sbjct: 110 FGVHVKANLRRRRKRYALT-GRKWSNNHLTFSIQNYTEKLGWYHSMEAV 157 >gi|241206300|ref|YP_002977396.1| lytic murein transglycosylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860190|gb|ACS57857.1| lytic murein transglycosylase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 407 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 11/85 (12%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I GG WP P L + L+ RL G + + F + ++A+ Sbjct: 330 QIAGYGGMQQRWPR-PNGALDI----TEKFELQTRLKTLGYY--NGEVDGNFGSGSKAAI 382 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNV 167 Q R G+ P G L A+ Sbjct: 383 SAVQSRIGMQPDGEPSLPLLNALRR 407 >gi|114652043|ref|XP_001157566.1| PREDICTED: matrix metalloproteinase 14 isoform 2 [Pan troglodytes] Length = 545 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|49475255|ref|YP_033296.1| hypothetical protein BH04580 [Bartonella henselae str. Houston-1] gi|49238060|emb|CAF27267.1| hypothetical protein BH04580 [Bartonella henselae str. Houston-1] Length = 282 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + +++ L I G + ++ D A+K FQ L +G ++ + L Sbjct: 221 ADIIEVQKALRIFG--NQEVIVTGVEDQKTVEALKQFQKMFDLPITGKINHTVL 272 >gi|261244996|ref|NP_001159653.1| matrix metalloproteinase-14 [Ovis aries] gi|256665391|gb|ACV04841.1| membrane-inserted matrix metallopeptidase 14 [Ovis aries] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|327286066|ref|XP_003227752.1| PREDICTED: matrix metalloproteinase-25-like [Anolis carolinensis] Length = 514 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L + + +A+K Q GL +G +D T++ M+ P Sbjct: 37 LTRYGYLPQPDPRAAQLQSSEELANAIKTMQRFAGLPTTGEMDQKTMDMMSKP 89 >gi|312195312|ref|YP_004015373.1| peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] gi|311226648|gb|ADP79503.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] Length = 404 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 5/130 (3%) Query: 108 SVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V++L + L+ G + S F + A++ Q GLD +G +D + + Sbjct: 152 GSDVRQLNQALVRLGYANELGLDPDSDQFGWATKLAIERLQDHLGLDQTGRLDLGQIVFL 211 Query: 166 NVPVDLRIRQLQV---NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + V + + + A + KV + Sbjct: 212 PTAARIIAVSATVGAPTPTSAVIMQATSTERQVTVALDAAQQTQVNAGDKVTITLPSGRT 271 Query: 223 RVDRQTPILH 232 + Sbjct: 272 TPGVVAAVGT 281 >gi|114652041|ref|XP_001157686.1| PREDICTED: matrix metalloproteinase-14 isoform 4 [Pan troglodytes] Length = 582 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|77165651|ref|YP_344176.1| hypothetical protein Noc_2186 [Nitrosococcus oceani ATCC 19707] gi|254434758|ref|ZP_05048266.1| ErfK/YbiS/YcfS/YnhG superfamily [Nitrosococcus oceani AFC27] gi|76883965|gb|ABA58646.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207091091|gb|EDZ68362.1| ErfK/YbiS/YcfS/YnhG superfamily [Nitrosococcus oceani AFC27] Length = 161 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 3/28 (10%) Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN 348 Y+H P+ + + GC+R+ N Sbjct: 118 IYIHGAPDAAIMG---LPGSHGCIRIHN 142 >gi|327291129|ref|XP_003230274.1| PREDICTED: matrix metalloproteinase-15-like, partial [Anolis carolinensis] Length = 404 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L PS + + +A+ Q +G+ +G++D T M P D Sbjct: 49 LRFYGYLPPSSPQMSTLRSAQTLSAAISEMQGFYGIPVTGLLDHETAAWMKRPRCGVPDK 108 Query: 172 RIRQLQVNLMRIK 184 ++ N+ R + Sbjct: 109 IGAGVKANMRRKR 121 >gi|327285686|ref|XP_003227564.1| PREDICTED: matrix metalloproteinase-14-like, partial [Anolis carolinensis] Length = 542 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G DS TL+AM P D Sbjct: 3 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLQVTGKSDSETLKAMKRPRCGVPDK 62 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 63 FGAEIKANVRRRR 75 >gi|325291890|ref|YP_004277754.1| hemaglutinin protein [Agrobacterium sp. H13-3] gi|325059743|gb|ADY63434.1| putative hemaglutinin protein [Agrobacterium sp. H13-3] Length = 1273 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ ++ L +G + +A+K FQ G P G + + + A+ Sbjct: 1215 AIRNIQAILNKNGF--DAGQPDGKLGKNTVTAIKDFQKSVGQTPDGRITNELVTAL 1268 >gi|323136902|ref|ZP_08071982.1| lytic murein transglycosylase [Methylocystis sp. ATCC 49242] gi|322397663|gb|EFY00185.1| lytic murein transglycosylase [Methylocystis sp. ATCC 49242] Length = 391 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + L+ LI +G + A+ FQ R GL +G L Sbjct: 329 PGLSRAERRELQSLLIRAGY--EVGDPDGVIGTKTKEAIADFQGRVGLPRNGRASLKVLN 386 Query: 164 AMN 166 A+ Sbjct: 387 ALR 389 >gi|319790645|ref|YP_004152278.1| Peptidoglycan-binding domain 1 protein [Thermovibrio ammonificans HB-1] gi|317115147|gb|ADU97637.1| Peptidoglycan-binding domain 1 protein [Thermovibrio ammonificans HB-1] Length = 445 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-GMVDSSTLEAMNVP 168 + +L+ L G D + + A + AV +Q H L + G V L+ +N+ Sbjct: 388 IGKLQVALKKEGYYD--GPIDGIWGAKTQRAVVAYQKDHDLPITPGAVTLKMLKMLNLS 444 >gi|306842151|ref|ZP_07474820.1| peptidoglycan binding domain-containing protein [Brucella sp. BO2] gi|306287738|gb|EFM59169.1| peptidoglycan binding domain-containing protein [Brucella sp. BO2] Length = 322 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 259 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 316 >gi|251779919|ref|ZP_04822839.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084234|gb|EES50124.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 412 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 11/90 (12%) Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD------PGKINAMASTKIEFYSR 318 + N ++ + ++Q PG + + S + F Sbjct: 304 WFYKNGYLIVQSDIVTGNMSAGYATPSGTYKLYYKQKDTVLRGPGYASPV-SFWMPFNG- 361 Query: 319 NNTYMHDTPEPILFN--NVVRFETSGCVRV 346 +HD F + GC+ + Sbjct: 362 -GIGLHDANWRSEFGGEIYKNGGSHGCINL 390 >gi|162329592|ref|NP_001104772.1| matrix metalloproteinase-9 [Equus caballus] gi|157930939|gb|ABW04638.1| MMP9 [Equus caballus] Length = 714 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G ++ D +E A++ Q R L +G +DS+TLEAM P Sbjct: 49 LFRYGYTGVAEMSEG--DQPLERALRRLQKRLALPETGELDSTTLEAMRTP 97 >gi|17228165|ref|NP_484713.1| hypothetical protein alr0669 [Nostoc sp. PCC 7120] gi|17130015|dbj|BAB72627.1| alr0669 [Nostoc sp. PCC 7120] Length = 295 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + ++++LI G LDP F + A+K FQ ++ ++ ST++A+ ++ Sbjct: 26 KEVQKQLIDLGLLDPPA--DGKFGRFSTQALKDFQSLMKIEE-AVLGKSTIQALMEVKEV 82 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 QL NL + + + +V ++ +E Sbjct: 83 IPFQLSNNLA-SRIIKYMQSKDYFVARGKQRYNIVYIEG 120 >gi|239987393|ref|ZP_04708057.1| hypothetical protein SrosN1_08817 [Streptomyces roseosporus NRRL 11379] gi|291444351|ref|ZP_06583741.1| ykuG [Streptomyces roseosporus NRRL 15998] gi|291347298|gb|EFE74202.1| ykuG [Streptomyces roseosporus NRRL 15998] Length = 804 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ-------VNLMRIKKL 186 +DA + V+ FQ L+ +G D T + V + R + + R K L Sbjct: 258 YDAKLAEWVREFQRFCKLEVNGRSDYQTWAQLLVSMGDPDRDVTGSDTRFEITASRAKWL 317 Query: 187 LEQKMGLRYVLVNIP 201 + K+ + +N P Sbjct: 318 RDNKIEIVGRYINDP 332 >gi|239940917|ref|ZP_04692854.1| hypothetical protein SrosN15_07960 [Streptomyces roseosporus NRRL 15998] Length = 764 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ-------VNLMRIKKL 186 +DA + V+ FQ L+ +G D T + V + R + + R K L Sbjct: 218 YDAKLAEWVREFQRFCKLEVNGRSDYQTWAQLLVSMGDPDRDVTGSDTRFEITASRAKWL 277 Query: 187 LEQKMGLRYVLVNIP 201 + K+ + +N P Sbjct: 278 RDNKIEIVGRYINDP 292 >gi|330872617|gb|EGH06766.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330943490|gb|EGH45832.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. pisi str. 1704B] Length = 413 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G A +A++ +Q L P G + LE++ Sbjct: 357 AQVTDLQKLLTAKGY--SLGAADGVIGAMTRAAIRAYQKDQHLPPDGYASTVLLESLRR 413 >gi|310826551|ref|YP_003958908.1| hypothetical protein ELI_0937 [Eubacterium limosum KIST612] gi|308738285|gb|ADO35945.1| hypothetical protein ELI_0937 [Eubacterium limosum KIST612] Length = 628 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 7/132 (5%) Query: 80 KAIAFYQDILSRGGWPELPIRPLH----LGNSSVSVQRL-RERLIISGDLDPSKGLSVAF 134 +AI Y + G + + L G+ L R L +G S + Sbjct: 198 QAIEGYSVEDATGNFGDGTKANLVNILVPGSGDSEALLLARYALCCNGYTVNYTSTS--W 255 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D+ + S V FQ L +G VD +T ++ + R R + + L Sbjct: 256 DSEMASQVTAFQSDLALPQTGTVDVNTWMSLLLSKGNPDRSCDACDTRFEITDYRMQHLN 315 Query: 195 YVLVNIPAASLE 206 +I L Sbjct: 316 AKGYSIVGRYLT 327 >gi|218508965|ref|ZP_03506843.1| putative peptidoglycan binding (cell wall degradation) protein [Rhizobium etli Brasil 5] Length = 272 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V ++++L+ G + +A+ FQ G+ +G L A+ Sbjct: 101 VMGIQQQLVRRGLY--NGIPDGIIGPRTSAAILFFQETVGMAQTGEATPEVLAALKTDAA 158 >gi|110331901|gb|ABG67056.1| matrix metalloproteinase 14 preproprotein [Bos taurus] Length = 536 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|19071492|gb|AAL84245.1|AF458045_1 type III effector HopPmaG [Pseudomonas syringae pv. maculicola] gi|330962749|gb|EGH63009.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 413 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G A +A++ +Q L P G + LE++ Sbjct: 357 AQVTDLQKLLTAKGY--SLGAADGVIGAMTRAAIRAYQKDQHLPPDGYASTVLLESLRR 413 >gi|62289545|ref|YP_221338.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941] gi|62195677|gb|AAX73977.1| hypothetical peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941] Length = 322 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 259 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 316 >gi|148251697|ref|YP_001236282.1| peptidoglycan binding domain-containing protein [Bradyrhizobium sp. BTAi1] gi|146403870|gb|ABQ32376.1| putative exported protein of unknown function with peptidoglycan binding domain [Bradyrhizobium sp. BTAi1] Length = 459 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 95 PELPIRPLHLGNSSVSVQR----LRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQ 146 + +P+ G + + ERL + DL + ++ + +A+K +Q Sbjct: 41 KPVATQPVRPGVQAPADTANAMGQAERLALQSDLAWVGQYNGAITGDVSERMVNAIKEYQ 100 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 G P+G+++ + + + Sbjct: 101 KLKGGKPTGVLNPQERAVLADTARRKQESV 130 >gi|260558069|ref|ZP_05830280.1| lytic murein transglycosylase B [Acinetobacter baumannii ATCC 19606] gi|260408423|gb|EEX01730.1| lytic murein transglycosylase B [Acinetobacter baumannii ATCC 19606] Length = 430 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 361 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 418 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 419 AFRQEQARKMMQ 430 >gi|239503932|ref|ZP_04663242.1| lytic murein transglycosylase family protein [Acinetobacter baumannii AB900] Length = 430 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 361 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 418 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 419 AFRQEQARKMMQ 430 >gi|193078394|gb|ABO13365.2| putative membrane-bound lytic murein transglycosylase [Acinetobacter baumannii ATCC 17978] Length = 430 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 361 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 418 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 419 AFRQEQARKMMQ 430 >gi|118590195|ref|ZP_01547598.1| putative transglycosylase transmembrane protein [Stappia aggregata IAM 12614] gi|118437167|gb|EAV43805.1| putative transglycosylase transmembrane protein [Stappia aggregata IAM 12614] Length = 416 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G +++L+ +L G + + +AV+ Q + G+ Sbjct: 346 GAPVYTQGNPDPGLDDAQMRQLQSKLSSMGY--DVGKIDGILGSGTRNAVQQVQQKLGMP 403 Query: 153 PSGMVDSSTLEAM 165 L + Sbjct: 404 ADAWPTPELLNRL 416 >gi|130486970|ref|NP_001076262.1| matrix metalloproteinase-14 precursor [Oryctolagus cuniculus] gi|3041677|sp|Q95220|MMP14_RABIT RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|1805295|gb|AAB41500.1| membrane type 1 metalloproteinase [Oryctolagus cuniculus] Length = 582 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADTDTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|1495995|emb|CAA62432.1| MT-MMP protein [Homo sapiens] Length = 582 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|91977288|ref|YP_569947.1| hypothetical protein RPD_2818 [Rhodopseudomonas palustris BisB5] gi|91683744|gb|ABE40046.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB5] Length = 536 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 8/42 (19%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 N +H P P + GCVR+ L T Sbjct: 138 NGVALHGGPLPGY------AASHGCVRM--PYGFAEKLFDRT 171 >gi|224824538|ref|ZP_03697645.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] gi|224603031|gb|EEG09207.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] Length = 219 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 Y+H E + F + GCVR+RN + Sbjct: 168 SYDRAIYIHGAGEHVAFGTPT---SLGCVRMRNPDVI 201 >gi|184156347|ref|YP_001844686.1| membrane-bound lytic murein transglycosylase B [Acinetobacter baumannii ACICU] gi|183207941|gb|ACC55339.1| Membrane-bound lytic murein transglycosylase B [Acinetobacter baumannii ACICU] Length = 430 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 361 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 418 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 419 AFRQEQARKMMQ 430 >gi|169797788|ref|YP_001715581.1| putative membrane-bound lytic murein transglycosylase [Acinetobacter baumannii AYE] gi|213155414|ref|YP_002317459.1| transglycolase [Acinetobacter baumannii AB0057] gi|215485138|ref|YP_002327379.1| lytic murein transglycosylase family protein [Acinetobacter baumannii AB307-0294] gi|301347988|ref|ZP_07228729.1| lytic murein transglycosylase family protein [Acinetobacter baumannii AB056] gi|301512988|ref|ZP_07238225.1| lytic murein transglycosylase family protein [Acinetobacter baumannii AB058] gi|301596722|ref|ZP_07241730.1| lytic murein transglycosylase family protein [Acinetobacter baumannii AB059] gi|169150715|emb|CAM88625.1| putative membrane-bound lytic murein transglycosylase [Acinetobacter baumannii AYE] gi|213054574|gb|ACJ39476.1| transglycolase [Acinetobacter baumannii AB0057] gi|213988779|gb|ACJ59078.1| lytic murein transglycosylase family protein [Acinetobacter baumannii AB307-0294] Length = 430 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 361 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 418 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 419 AFRQEQARKMMQ 430 >gi|28868073|ref|NP_790692.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. tomato str. DC3000] gi|28851309|gb|AAO54387.1| type III helper protein HopAJ1 [Pseudomonas syringae pv. tomato str. DC3000] Length = 413 Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G A +A++ +Q L P G + LE++ Sbjct: 357 AQVTDLQKLLTAKGY--SLGAADGVIGAMTRAAIRAYQKDQHLPPDGYASTVLLESLRR 413 >gi|17987639|ref|NP_540273.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260545698|ref|ZP_05821439.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260563641|ref|ZP_05834127.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|260566833|ref|ZP_05837303.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|261757799|ref|ZP_06001508.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] gi|265999562|ref|ZP_05466915.2| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|17983350|gb|AAL52537.1| peptidoglycan binding domain containing protein [Brucella melitensis bv. 1 str. 16M] gi|260097105|gb|EEW80980.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260153657|gb|EEW88749.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|260156351|gb|EEW91431.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|261737783|gb|EEY25779.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] gi|263094677|gb|EEZ18456.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326408602|gb|ADZ65667.1| Putative peptidoglycan binding domain 1 [Brucella melitensis M28] gi|326538323|gb|ADZ86538.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90] Length = 299 Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SS + R++ L G + + ++ + AV+ FQ GL +G +DS+ + M Sbjct: 236 SSQDIVRVQAGLKAFG--NDTVPVNGQPGKATQEAVREFQKLFGLHVTGEIDSALISKMR 293 >gi|316933731|ref|YP_004108713.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315601445|gb|ADU43980.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 502 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 12/67 (17%) Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 +H P + GC+R+ + +W W+R +V TP Sbjct: 169 GIALHAGALPGY------PASHGCIRMPMPFAIKMW------GWTRMGARVIVSAGDVTP 216 Query: 380 VKLATEV 386 A + Sbjct: 217 ASFAHPL 223 >gi|126730456|ref|ZP_01746267.1| Peptidoglycan-binding domain 1 [Sagittula stellata E-37] gi|126709189|gb|EBA08244.1| Peptidoglycan-binding domain 1 [Sagittula stellata E-37] Length = 670 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 13/95 (13%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLH-----LGNSSVSVQRLRERLIISGDLDPSKGL 130 A A + I + P L LG + + + ++ L + G + + Sbjct: 483 AYVNAATQRIKAIKAD------PHYDLRRAEDFLGLTREARRDIQRDLDMLGYY--TWAV 534 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F AV+ +Q GL+ +G +D + + Sbjct: 535 DGIFGEGTRDAVRGWQKNAGLEETGYLDLDQIAKI 569 >gi|293339906|ref|XP_001055465.2| PREDICTED: matrix metalloproteinase 25 [Rattus norvegicus] Length = 615 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLD 152 + + L + S+ V L G L P+ + + ++ A+K+ Q GL Sbjct: 71 QPVRAQNLRAQDVSMGVDW----LTRYGYLPPADPVHAQMQSLGKLQDAIKVMQRFAGLP 126 Query: 153 PSGMVDSSTLEAMNVP 168 +G +D T+ M+ P Sbjct: 127 ETGQMDPITIATMHKP 142 >gi|254477979|ref|ZP_05091364.1| peptidoglycan binding domain protein [Ruegeria sp. R11] gi|214028564|gb|EEB69400.1| peptidoglycan binding domain protein [Ruegeria sp. R11] Length = 351 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 2/82 (2%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 D ++ GG P P G + L++ L G + G E A++ Sbjct: 272 HLADRIAGGGPLRTPFPPDANGLTKEDRIALQKGLTARGF--DTGGADGVIGPNTEKAIR 329 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 +Q GL +G S L + Sbjct: 330 AYQQSRGLPLTGTPSQSLLLEL 351 >gi|169634920|ref|YP_001708656.1| putative membrane-bound lytic murein transglycosylase [Acinetobacter baumannii SDF] gi|169153712|emb|CAP02911.1| putative membrane-bound lytic murein transglycosylase [Acinetobacter baumannii] Length = 430 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 361 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 418 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 419 AFRQEQARKMMQ 430 >gi|192288521|ref|YP_001989126.1| peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] gi|192282270|gb|ACE98650.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] Length = 448 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 ++ L +GD + ++ + +A+K FQ G P+G+++ Sbjct: 54 AIQSDLAWTGDY--NGLINGEVSDRMIAAIKQFQTNQGHKPTGVLNPQ 99 >gi|30348960|ref|NP_536701.1| matrix metalloproteinase-28 isoform 1 [Mus musculus] gi|27461082|gb|AAL57761.1| matrix metalloproteinase-28 variant A precursor [Mus musculus] gi|56207069|emb|CAI24738.1| matrix metalloproteinase 28 (epilysin) [Mus musculus] gi|219518500|gb|AAI45050.1| Matrix metallopeptidase 28 (epilysin) [Mus musculus] Length = 510 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 111 VQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LR+ L G L + A A +A++ FQ L SG++D +TL M Sbjct: 29 LPELRQEAEAFLEKYGYLSEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMT 87 Query: 167 VP 168 P Sbjct: 88 RP 89 >gi|260577440|ref|ZP_05845401.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sp. SW2] gi|259020344|gb|EEW23679.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sp. SW2] Length = 433 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + ++ RL+ +G+ A SA+ L+Q G+ +G +D L+ + V Sbjct: 314 PDIAEIQARLMAMSY--DPEGIDGLTGAGFRSALGLWQTSAGIPSTGYLDGPQLDRLKVD 371 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + + N K L + + + Sbjct: 372 SESAFDLWKANSDHFKLLSKASAAPKTGV 400 >gi|114652047|ref|XP_001157506.1| PREDICTED: matrix metalloproteinase 14 isoform 1 [Pan troglodytes] Length = 589 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 46 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 105 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 106 FGAEIKANVRRKR 118 >gi|27446748|gb|AAL47576.1| matrix metalloproteinase-28 precursor [Mus musculus] gi|56207071|emb|CAI24740.1| matrix metalloproteinase 28 (epilysin) [Mus musculus] gi|219520252|gb|AAI45049.1| Mmp28 protein [Mus musculus] Length = 520 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 111 VQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LR+ L G L + A A +A++ FQ L SG++D +TL M Sbjct: 29 LPELRQEAEAFLEKYGYLSEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMT 87 Query: 167 VP 168 P Sbjct: 88 RP 89 >gi|30348964|ref|NP_766385.1| matrix metalloproteinase-28 isoform 2 [Mus musculus] gi|26341830|dbj|BAC34577.1| unnamed protein product [Mus musculus] gi|27461084|gb|AAL57762.1| matrix metalloproteinase-28 variant B precursor [Mus musculus] gi|56207070|emb|CAI24739.1| matrix metalloproteinase 28 (epilysin) [Mus musculus] gi|223459846|gb|AAI37922.1| Matrix metallopeptidase 28 (epilysin) [Mus musculus] Length = 496 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 111 VQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LR+ L G L + A A +A++ FQ L SG++D +TL M Sbjct: 29 LPELRQEAEAFLEKYGYLSEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMT 87 Query: 167 VP 168 P Sbjct: 88 RP 89 >gi|118580986|ref|YP_902236.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] gi|118503696|gb|ABL00179.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] Length = 192 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 8/68 (11%) Query: 290 SPEPPNFIFRQDPG-KINAMASTKIEFYS---RNNTY-MHDTPEPILFNNVVRFETSGCV 344 + PG +N M KI + Y +H P R T GC Sbjct: 112 RERGISLPRAVPPGHPLNYMGPFKISLSHRTWKGAIYRIHGNNNPRRVG---RRVTGGCF 168 Query: 345 RVRNIIDL 352 + N L Sbjct: 169 VMHNRDGL 176 >gi|242000886|ref|XP_002435086.1| matrix metalloproteinase, putative [Ixodes scapularis] gi|215498416|gb|EEC07910.1| matrix metalloproteinase, putative [Ixodes scapularis] Length = 550 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 118 LIISGDL--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G + + ++ + AVK FQ GL +G VD+ T M +P Sbjct: 5 LEKFGYIAPPRNGTAALRSQQALVDAVKDFQRFAGLRVTGRVDNETATMMQLP 57 >gi|170745242|ref|YP_001766699.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658843|gb|ACB27897.1| Peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 455 Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 5/93 (5%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN---VPVD 170 +++ L G P +AV +FQ R GLD SG+ D+ T+ A+ P Sbjct: 219 VQQSLNRLG-AAPPLVEDGRNGPRTMAAVAMFQERCGLDDSGLADARTIAAIQEALRPAP 277 Query: 171 LRIRQLQVN-LMRIKKLLEQKMGLRYVLVNIPA 202 R ++ L R L +P Sbjct: 278 DRAVLARIQDLERQVAARAASPTQTAPLQPVPM 310 >gi|293351330|ref|XP_002742480.1| PREDICTED: matrix metalloproteinase 25 [Rattus norvegicus] Length = 630 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLD 152 + + L + S+ V L G L P+ + + ++ A+K+ Q GL Sbjct: 71 QPVRAQNLRAQDVSMGVDW----LTRYGYLPPADPVHAQMQSLGKLQDAIKVMQRFAGLP 126 Query: 153 PSGMVDSSTLEAMNVP 168 +G +D T+ M+ P Sbjct: 127 ETGQMDPITIATMHKP 142 >gi|83952660|ref|ZP_00961390.1| hypothetical protein ISM_10920 [Roseovarius nubinhibens ISM] gi|83835795|gb|EAP75094.1| hypothetical protein ISM_10920 [Roseovarius nubinhibens ISM] Length = 424 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L +G + + A A++ +Q +GL +G D ++L AM + Sbjct: 371 AIQTMLNSAGY--EAGTPDGVWGAGSAQAMRAWQAENGLATTGAPDRASLAAMGMN 424 >gi|316931482|ref|YP_004106464.1| peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris DX-1] gi|315599196|gb|ADU41731.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris DX-1] Length = 446 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 ++ L +GD + ++ + +A+K FQ G P+G+++ Sbjct: 53 AIQSDLAWTGDY--NGLINGEVSDRMIAAIKQFQTNQGHKPTGVLNPQ 98 >gi|195027856|ref|XP_001986798.1| GH21566 [Drosophila grimshawi] gi|193902798|gb|EDW01665.1| GH21566 [Drosophila grimshawi] Length = 587 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D +A++ FQ GL+ +G +D T++ M++P Sbjct: 40 LSQFGYLPASARNPENSGLQDKRTWVNAIQEFQSFAGLNITGELDEETMKLMSLPRCGVR 99 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 100 DRVGTGDGRSKRYALQGSRWR 120 >gi|171913689|ref|ZP_02929159.1| hypothetical protein VspiD_20955 [Verrucomicrobium spinosum DSM 4136] Length = 214 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 41/185 (22%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + G + +++ + + G++ S + GR T R Sbjct: 68 WDADDMTGAPSIRIDLGEQMVYFYKGGELAGGSPISSGREGYSTRPGRYR---------- 117 Query: 245 VIPRSIIQKDMMALLRQDPQY-LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 II+KD+ Y D N+ + + ++ N+ R G Sbjct: 118 -----IIEKDIDHKSSIYGDYEDYDGNVIVQNVDNRKHPRPAGTRFEGAKMNYFMRIYGG 172 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 MH P + GC+R+ + + TP Sbjct: 173 -----------------VGMHQGYLPGY------AASHGCIRL--PGRMAEKFYEATPMG 207 Query: 364 SRYHI 368 + I Sbjct: 208 TPVTI 212 >gi|219847915|ref|YP_002462348.1| ErfK/YbiS/YcfS/YnhG family protein [Chloroflexus aggregans DSM 9485] gi|219542174|gb|ACL23912.1| ErfK/YbiS/YcfS/YnhG family protein [Chloroflexus aggregans DSM 9485] Length = 374 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 12/146 (8%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG--L 193 + ++ Q+ +G D +D ++ + V ++ + R+ + Sbjct: 196 EALSPFLRQQQLIYGFDLD-TLDEVQIDDLGRRVAEQLGLSTAPVARLPGAPDWSPALWQ 254 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY---------W 244 R + V++ L A E+ + + V GR TP I + W Sbjct: 255 RRIEVDLTRQRLFAYEDDLLVFTAPVATGRDGFNTPRGEFAIYYRLPEQTMADCLGGECW 314 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNN 270 +P + ++ + Y + + Sbjct: 315 YVPNIPWVQYVVGGVALHGTYWHNAH 340 >gi|147900438|ref|NP_001083604.1| matrix metalloproteinase-28 b [Xenopus laevis] gi|38197301|gb|AAH61659.1| MGC68506 protein [Xenopus laevis] Length = 497 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L+ + + SAV+ FQ L SG +D+ T++ M P Sbjct: 36 LEKYGYLEETTKQHN--GKQLASAVREFQWLSHLPVSGQLDTITVQQMVQP 84 >gi|51244909|ref|YP_064793.1| hypothetical protein DP1057 [Desulfotalea psychrophila LSv54] gi|50875946|emb|CAG35786.1| unknown protein [Desulfotalea psychrophila LSv54] Length = 364 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + +++ L+ +G + + AV FQ L + + TL+A++V Sbjct: 308 ISQVQRALLKAGY--NPGSIDGVIGSQTMKAVNKFQAAKKLSVTKYLTIETLQALSV 362 >gi|88703918|ref|ZP_01101633.1| membrane-bound lytic murein transglycosylase [Congregibacter litoralis KT71] gi|88701745|gb|EAQ98849.1| membrane-bound lytic murein transglycosylase [Congregibacter litoralis KT71] Length = 422 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 99 IRPLHLGN------SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 PL LG+ V+ + L G + +A++ FQ+ L Sbjct: 346 APPLALGDAASAPLRRADVENAQRALNSLGH--EAGEPDGVLGKRTRAALRAFQLEQKLP 403 Query: 153 PSGMVDSSTLE 163 G D TLE Sbjct: 404 ADGYPDRRTLE 414 >gi|114652045|ref|XP_001157623.1| PREDICTED: matrix metalloproteinase 14 isoform 3 [Pan troglodytes] Length = 600 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|197103006|ref|NP_001124793.1| matrix metalloproteinase-14 precursor [Pongo abelii] gi|75070961|sp|Q5RES1|MMP14_PONAB RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; Flags: Precursor gi|55725913|emb|CAH89736.1| hypothetical protein [Pongo abelii] Length = 582 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLRVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|47523560|ref|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scrofa] gi|11386723|sp|Q9XT90|MMP14_PIG RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|5051632|gb|AAD38324.1|AF067419_1 membrane-type 1 matrix metalloproteinase [Sus scrofa] Length = 580 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 37 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 96 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 97 FGAEIKANVRRKR 109 >gi|294141374|ref|YP_003557352.1| membrane-bound lytic murein transglycolase [Shewanella violacea DSS12] gi|293327843|dbj|BAJ02574.1| membrane-bound lytic murein transglycolase [Shewanella violacea DSS12] Length = 393 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG + P S V++L+ +L G ++ ++ +Q G Sbjct: 318 NGGVSLVAAPPKQDNLSRAKVKQLQAKLNSKGF--DVGKPDGVMGRNSKTGLRAYQKSVG 375 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G D +T A+ V Sbjct: 376 IVADGFPDEATFNAIGVN 393 >gi|224077434|ref|XP_002187137.1| PREDICTED: similar to matrix metalloproteinase 24 preproprotein (predicted) [Taeniopygia guttata] Length = 596 Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L PS + V+SAV Q +G+ +G++D +T+E M P Sbjct: 36 LKTYGYLLPSDSQMSPLQSGKAVQSAVATMQQFYGIPVTGVLDQTTIEWMKKP 88 >gi|288916653|ref|ZP_06411028.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] gi|288351908|gb|EFC86110.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] Length = 276 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 13/78 (16%) Query: 101 PLHLGNSSVSVQRLRERLII-------SGDLDPSKGLSVAFDAYVESAVKLFQM----RH 149 L + V L+ L I SGD + + V Q Sbjct: 190 TLREKSRGPEVVTLQNALNIIFGHEATSGD-PYRLVPDGVYGPLTTARVAAVQRYATPWF 248 Query: 150 G-LDPSGMVDSSTLEAMN 166 G + G+ +T + Sbjct: 249 GRIPDDGICGPNTWRKIG 266 >gi|148683757|gb|EDL15704.1| matrix metallopeptidase 28 (epilysin), isoform CRA_a [Mus musculus] Length = 470 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 111 VQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LR+ L G L + A A +A++ FQ L SG++D +TL M Sbjct: 29 LPELRQEAEAFLEKYGYLSEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMT 87 Query: 167 VP 168 P Sbjct: 88 RP 89 >gi|12803593|gb|AAH02631.1| MMP28 protein [Homo sapiens] gi|60655721|gb|AAX32424.1| matrix metalloproteinase 28 [synthetic construct] gi|119600535|gb|EAW80129.1| matrix metallopeptidase 28, isoform CRA_b [Homo sapiens] gi|325464269|gb|ADZ15905.1| matrix metallopeptidase 28 [synthetic construct] Length = 393 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|254472170|ref|ZP_05085570.1| ErfK/YbiS/YcfS/YnhG [Pseudovibrio sp. JE062] gi|211958453|gb|EEA93653.1| ErfK/YbiS/YcfS/YnhG [Pseudovibrio sp. JE062] Length = 127 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWLLKDTPTWSRYHI 368 +H T + + + GCVR+ N L + + P+ +R I Sbjct: 78 GYAIHGT---DVVKRLGAPASHGCVRLHPKNAKRLFSLIQANGPSNARIVI 125 >gi|148683760|gb|EDL15707.1| matrix metallopeptidase 28 (epilysin), isoform CRA_d [Mus musculus] Length = 543 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 111 VQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LR+ L G L + A A +A++ FQ L SG++D +TL M Sbjct: 62 LPELRQEAEAFLEKYGYLSEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMT 120 Query: 167 VP 168 P Sbjct: 121 RP 122 >gi|312869485|ref|ZP_07729641.1| KxYKxGKxW signal domain protein [Lactobacillus oris PB013-T2-3] gi|311094993|gb|EFQ53281.1| KxYKxGKxW signal domain protein [Lactobacillus oris PB013-T2-3] Length = 843 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 25/131 (19%) Query: 258 LLRQDPQYLKDNNIHMID------EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA-- 309 + Q+ YL +NN + V + + R + A+ Sbjct: 720 RIGQNRVYLMNNNDVVYTMYCTAGYYQNGVSTTPLGTYYIQAE----RGNSFYNGALGEG 775 Query: 310 -STKIEFYSRNNTYMHDT--PEPILFNNVVRF-------ETSGCVRVRNIIDLDVWLLKD 359 + F + + Y+ T + + GC+R+ W++ + Sbjct: 776 ANYWTSFLN-HGEYLFHTVPTDRWGNYKPYEASQLGINQGSHGCIRLSIPD--AYWIMHN 832 Query: 360 TPTWSRYHIEE 370 PT +R I+ Sbjct: 833 VPTGTRVVIDN 843 >gi|213965906|ref|ZP_03394097.1| ErfK/YbiS/YcfS/YnhG family protein [Corynebacterium amycolatum SK46] gi|213951484|gb|EEB62875.1| ErfK/YbiS/YcfS/YnhG family protein [Corynebacterium amycolatum SK46] Length = 389 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%) Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 Y+H P + ++ GC+ V + W L +T ++ + Sbjct: 309 GIYVHGAPW-STWAQGSVNQSHGCINVTDAN--AKWFLDNTKRGDIVIVKNTI 358 >gi|45382789|ref|NP_989998.1| matrix metalloproteinase-9 [Gallus gallus] gi|12043935|gb|AAG47650.1|AF222690_1 75 kDa gelatinase [Gallus gallus] Length = 686 Score = 38.1 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G + ++ + + A++ Q + GL+ +G +D+STLEAM P Sbjct: 47 LLRFGYIQEAEVRRSSKHVSLAKALRRMQKQLGLEETGELDASTLEAMRAP 97 >gi|297687615|ref|XP_002821303.1| PREDICTED: matrix metalloproteinase-21-like [Pongo abelii] Length = 569 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 19/34 (55%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 A + AV+ FQ + L SG +D +TL MN P Sbjct: 82 GAALAEAVRRFQRANALPASGELDVATLATMNRP 115 >gi|259503864|ref|ZP_05746766.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259168165|gb|EEW52660.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 926 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 YQ I + P + G V ++ RL + + + A+ Sbjct: 690 NYQQIQAN---PSEVGHNIGPGYEGVKTWFIKSRL-------GTANIHNQYTMGDAYAIM 739 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVP 168 Q HGL +G VD T A+ Sbjct: 740 NIQRSHGLPATGWVDLPTWRALGYS 764 >gi|320094720|ref|ZP_08026474.1| hypothetical protein HMPREF9005_1086 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978362|gb|EFW09951.1| hypothetical protein HMPREF9005_1086 [Actinomyces sp. oral taxon 178 str. F0338] Length = 476 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%) Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 + MH P F + GC+ + ++ W+ Sbjct: 428 SYAMHGAPWVARFGIGSDASSHGCINM--PVEEAQWM 462 >gi|145341184|ref|XP_001415693.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575916|gb|ABO93985.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 210 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 ERL+ L + F AVK +Q G++P+G+ ++ EA Sbjct: 5 ERLLA---LPNGGLPTGFFGPSTTEAVKKWQKVRGIEPTGVFGDASREA 50 >gi|332854690|ref|ZP_08435477.1| lytic murein transglycosylase [Acinetobacter baumannii 6013150] gi|332865570|ref|ZP_08436410.1| lytic murein transglycosylase [Acinetobacter baumannii 6013113] gi|332727847|gb|EGJ59249.1| lytic murein transglycosylase [Acinetobacter baumannii 6013150] gi|332735222|gb|EGJ66299.1| lytic murein transglycosylase [Acinetobacter baumannii 6013113] Length = 416 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 347 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 404 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 405 AFRQEQARKMMQ 416 >gi|114705563|ref|ZP_01438466.1| hypothetical protein FP2506_13894 [Fulvimarina pelagi HTCC2506] gi|114538409|gb|EAU41530.1| hypothetical protein FP2506_13894 [Fulvimarina pelagi HTCC2506] Length = 268 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 10/118 (8%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIA-QTEKAIAFYQDILSRGGWPELPIRPLH 103 + + D A + P + + A+ + L PI PL Sbjct: 154 GRLADRLADGDYAGFAR--RYNGPGYRRNAYDTKIATALKRARAALETTD----PIGPLA 207 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G V RL++ L +G + + F + +A+ +Q GL +G+ D T Sbjct: 208 IGARGRVVLRLQDALRSAG---SAIRVDGLFGSRTAAALAAWQAAAGLPATGVADERT 262 >gi|209528064|ref|ZP_03276542.1| OpcA protein [Arthrospira maxima CS-328] gi|209491488|gb|EDZ91865.1| OpcA protein [Arthrospira maxima CS-328] Length = 443 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-----PV 169 ++ L G + AV+ Q + L +G VDS TLE + Sbjct: 58 QQLLGGLGFYK--GAIDGIHGTETRDAVRDAQKAYQLPITGRVDSDTLEHLRTEFAKLSP 115 Query: 170 DLRI 173 + R+ Sbjct: 116 EQRV 119 >gi|148683759|gb|EDL15706.1| matrix metallopeptidase 28 (epilysin), isoform CRA_c [Mus musculus] Length = 529 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 111 VQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LR+ L G L + A A +A++ FQ L SG++D +TL M Sbjct: 62 LPELRQEAEAFLEKYGYLSEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMT 120 Query: 167 VP 168 P Sbjct: 121 RP 122 >gi|148683761|gb|EDL15708.1| matrix metallopeptidase 28 (epilysin), isoform CRA_e [Mus musculus] Length = 553 Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 111 VQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LR+ L G L + A A +A++ FQ L SG++D +TL M Sbjct: 62 LPELRQEAEAFLEKYGYLSEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMT 120 Query: 167 VP 168 P Sbjct: 121 RP 122 >gi|332873283|ref|ZP_08441238.1| lytic murein transglycosylase [Acinetobacter baumannii 6014059] gi|322506216|gb|ADX01670.1| membrane-bound lytic murein transglycosylase B [Acinetobacter baumannii 1656-2] gi|332738489|gb|EGJ69361.1| lytic murein transglycosylase [Acinetobacter baumannii 6014059] Length = 416 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 347 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 404 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 405 AFRQEQARKMMQ 416 >gi|289771425|ref|ZP_06530803.1| membrane protein [Streptomyces lividans TK24] gi|289701624|gb|EFD69053.1| membrane protein [Streptomyces lividans TK24] Length = 226 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHG---LDPSGMV 157 G + V RL +L+ G G + V+ FQ G G Sbjct: 157 FRPGADNPYVTRLGRQLVRKGFGTYYTRGPGPRWGEADRRGVQAFQRAQGWRGGAADGYP 216 Query: 158 DSSTLEAM 165 T + Sbjct: 217 GPETWRRL 224 >gi|256377950|ref|YP_003101610.1| peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] gi|255922253|gb|ACU37764.1| Peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] Length = 164 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 2/55 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+E L F E AV+ Q G+ G T +AM Sbjct: 92 VLVLQESLNAC--YGQGLVEDGDFGGNTERAVRNVQAIIGVPVDGRAGPITRKAM 144 >gi|217071900|gb|ACJ84310.1| unknown [Medicago truncatula] Length = 330 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P P + L + ++++ L G L+ S + D A+K +Q + Sbjct: 78 PSPPSQLLK----YKGLDQIKQYLQNFGYLEQSGPFNNTLDQETVLALKTYQRYFNI 130 >gi|254466552|ref|ZP_05079963.1| putative transglycolase [Rhodobacterales bacterium Y4I] gi|206687460|gb|EDZ47942.1| putative transglycolase [Rhodobacterales bacterium Y4I] Length = 410 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 11/73 (15%) Query: 99 IRPLHLG--------NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 PL G + L++RL G + G +A+ +Q G Sbjct: 338 GGPLRTGFPPDSYGLTKDDRI-LLQKRLTAKGF--DTGGADGVLGPKSRAAISGYQSSRG 394 Query: 151 LDPSGMVDSSTLE 163 L +G + L Sbjct: 395 LPVTGDPSPALLA 407 >gi|254424330|ref|ZP_05038048.1| opcA protein [Synechococcus sp. PCC 7335] gi|196191819|gb|EDX86783.1| opcA protein [Synechococcus sp. PCC 7335] Length = 441 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +++ L G + + A+ Q GL SG VD+ TL + Sbjct: 54 EIQQLLASLGFYAGE--IDGSHGNDTREAILAAQQDFGLRLSGQVDTETLARLR 105 >gi|195153567|ref|XP_002017696.1| GL17167 [Drosophila persimilis] gi|198460451|ref|XP_001361721.2| GA18484 [Drosophila pseudoobscura pseudoobscura] gi|194113492|gb|EDW35535.1| GL17167 [Drosophila persimilis] gi|198137022|gb|EAL26300.2| GA18484 [Drosophila pseudoobscura pseudoobscura] Length = 586 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 14/92 (15%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D +A++ FQ GL+ +G +D TL+ M++P Sbjct: 37 LSQFGYLPASARNPANSGLQDKSTWLNAIQEFQNFAGLNITGELDDETLKLMSLPRCGVR 96 Query: 169 -----VDLRIRQLQVNLMRIKKLLEQKMGLRY 195 D R ++ + R + +Y Sbjct: 97 DRVGTGDSRSKRYALQGSRWRVKNLTYKVSKY 128 >gi|110634376|ref|YP_674584.1| lytic murein transglycosylase [Mesorhizobium sp. BNC1] gi|110285360|gb|ABG63419.1| lytic murein transglycosylase [Chelativorans sp. BNC1] Length = 394 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P R G +++ L+++L G + AV+ Q+R GL Sbjct: 322 GAPAFDARNPEQGLEPENMKILQQKLQALGY--HVGEVDGILGFNTREAVRQEQLRQGLP 379 Query: 153 PSG 155 G Sbjct: 380 ADG 382 >gi|157146473|ref|YP_001453792.1| hypothetical protein CKO_02233 [Citrobacter koseri ATCC BAA-895] gi|157083678|gb|ABV13356.1| hypothetical protein CKO_02233 [Citrobacter koseri ATCC BAA-895] Length = 525 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L + L + L+ S ++ A + + FQ + GL G+ TL + Sbjct: 442 DKDLAWLDQTLSQT--LNEPLTHSRSWTAELAKRTREFQDKAGLHVDGIAGEETLMQLMR 499 Query: 168 PVDLRIRQLQVNLMRIK 184 + L L + + Sbjct: 500 ATNSVPGVLAQTLSQKQ 516 >gi|11935132|gb|AAG41981.1| matrix metalloproteinase 28 [Homo sapiens] Length = 520 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|121606027|ref|YP_983356.1| extracellular solute-binding protein [Polaromonas naphthalenivorans CJ2] gi|120594996|gb|ABM38435.1| extracellular solute-binding protein, family 1 [Polaromonas naphthalenivorans CJ2] Length = 524 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 28/191 (14%) Query: 114 LRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LRE I+ G LD + L F + A + FQ G+ G++ Sbjct: 129 LREAQILLGKLDYNAGPLDGTFGPQTQVATEAFQESQGVTVDGLIT-------------- 174 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA----SLEAVENGKVGLRSTVIVGRVDRQT 228 + +NL R ++N P L+ E I D Sbjct: 175 -ATVLMNLRRAVNGAGASAKETVRVLNWPDYIDAGVLQDFEKENNIRVVYDIFTSNDDLQ 233 Query: 229 PILHSRIN-RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 L + + P ++ K ++ L ++ + V Sbjct: 234 ARLRAGGTPYDVVFPTANAVPAMAAKGLLGK-------LDKASLKNLGNIDPRVDATLRA 286 Query: 288 WNSPEPPNFIF 298 W+ + + Sbjct: 287 WDKDGSYSLPY 297 >gi|298485427|ref|ZP_07003514.1| Hrp-associated lytic transglycosylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160047|gb|EFI01081.1| Hrp-associated lytic transglycosylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 413 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L++ L G A +A++ +Q L P G + LE + Sbjct: 357 AQVTDLQKLLTAKGY--SLGAADGVIGAMTRAAIRAYQKDQHLPPDGYASTVLLERLRR 413 >gi|309371391|emb|CAP28733.3| CBR-ZMP-1 protein [Caenorhabditis briggsae AF16] Length = 517 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L G + + A+K Q GL+ +G +D T M P Sbjct: 28 LQKYGYLPR--GSNQLSSTSLSEALKNMQRMAGLEETGELDERTKRMMERP 76 >gi|170726300|ref|YP_001760326.1| lytic murein transglycosylase [Shewanella woodyi ATCC 51908] gi|169811647|gb|ACA86231.1| lytic murein transglycosylase [Shewanella woodyi ATCC 51908] Length = 395 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V++L+ +L G A +S ++ FQ GL G ++ A+ V Sbjct: 338 ARVKQLQAKLNEKGF--DVGKPDGVLGANSKSGLREFQRSAGLVADGFPSEASFNALGV 394 >gi|88813298|ref|ZP_01128537.1| hypothetical protein NB231_07362 [Nitrococcus mobilis Nb-231] gi|88789470|gb|EAR20598.1| hypothetical protein NB231_07362 [Nitrococcus mobilis Nb-231] Length = 173 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 27/179 (15%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH----SRINRIM 239 + + + R+VL+ + L + ++ V GR + + I Sbjct: 6 RSEPDSEGAARWVLIELGTQRLHLYQANRLLSSYLVSSGRNGVGEQMGSGCTPRGWHVIR 65 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P + L + G++ + + W S F Sbjct: 66 ARIGANQPLGAVFVGRRPTGEIYSPALANR------YPGRDWILTRILWLSGLEQGF--- 116 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 N + S R Y+H P + + GC+R+ N +L + Sbjct: 117 ------NRLGSVD---SMRRFIYIHGAPANVPLG---LPASKGCIRMGNADVVELFEAV 163 >gi|291388662|ref|XP_002710873.1| PREDICTED: matrix metalloproteinase 24 [Oryctolagus cuniculus] Length = 574 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDL-DPSKGLSVAF-DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S ++SAV Q +G+ +G++D +T+E M P Sbjct: 14 LKSYGYLLPYDARASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 66 >gi|229368716|gb|ACQ62999.1| matrix metalloproteinase 24 preproprotein (predicted), 5 prime [Dasypus novemcinctus] Length = 245 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 3 LKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 55 >gi|169731509|gb|ACA64881.1| matrix metalloproteinase 24 preproprotein (predicted) [Callicebus moloch] Length = 595 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L P + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 30 RLANWLKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 87 >gi|168984487|emb|CAI24737.2| matrix metalloproteinase 28 (epilysin) [Mus musculus] Length = 407 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 111 VQRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LR+ L G L + A A +A++ FQ L SG++D +TL M Sbjct: 29 LPELRQEAEAFLEKYGYLSEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMT 87 Query: 167 VP 168 P Sbjct: 88 RP 89 >gi|149733599|ref|XP_001499275.1| PREDICTED: similar to matrix metalloproteinase 24 preproprotein (predicted) [Equus caballus] Length = 666 Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L P + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 101 RLANWLKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 158 >gi|311895838|dbj|BAJ28246.1| putative hydrolase [Kitasatospora setae KM-6054] Length = 484 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 38/125 (30%), Gaps = 14/125 (11%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR 115 AR + S P + +P R L LG++ V ++ Sbjct: 352 TARPTQAVTSKAPAVPTNQAPVAVAPSTSAAAPSPSPTPSFVPGRVLRLGDTGPEVVAMQ 411 Query: 116 ERLII-----SGDLDP---SKGLSVAFDAYVESAVKLFQ----MRHGLD--PSGMVDSST 161 L+ G LD F ++ S + FQ H L G D+ T Sbjct: 412 RLLMAYNCNNIGPLDQNRTDLTNQPGFGSWTLSVLSSFQQDQKQAHNLRGFQPGTYDAPT 471 Query: 162 LEAMN 166 EA+ Sbjct: 472 QEALQ 476 >gi|126724804|ref|ZP_01740647.1| Peptidoglycan-binding domain 1 [Rhodobacterales bacterium HTCC2150] gi|126705968|gb|EBA05058.1| Peptidoglycan-binding domain 1 [Rhodobacterales bacterium HTCC2150] Length = 546 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 ++L G + A++ FQ L +G + ST+ Sbjct: 495 QKLTKLGF--EPGRIDGKLSEETRRAIRRFQRAANLPVTGYLSRSTV 539 >gi|126642983|ref|YP_001085967.1| putative membrane-bound lytic murein transglycosylase [Acinetobacter baumannii ATCC 17978] Length = 348 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 279 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 336 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 337 AFRQEQARKMMQ 348 >gi|319785587|ref|YP_004145063.1| peptidoglycan-binding domain 1 protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171475|gb|ADV15013.1| Peptidoglycan-binding domain 1 protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1345 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +VQ ++ L +G + G ++A+ FQ + + +G VD + ++A+ Sbjct: 1288 AVQNIQRILNKNGY--DAGGADGKMGQKTKTAIMAFQTDNKMAATGEVDENLVKAL 1341 >gi|296199747|ref|XP_002747296.1| PREDICTED: matrix metalloproteinase-24 [Callithrix jacchus] Length = 595 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L P + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 30 RLANWLKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 87 >gi|27375875|ref|NP_767404.1| hypothetical protein bll0764 [Bradyrhizobium japonicum USDA 110] gi|27349013|dbj|BAC46029.1| bll0764 [Bradyrhizobium japonicum USDA 110] Length = 468 Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 17/104 (16%) Query: 90 SRGGWPELPIRPLHLGNSSV-SVQRLR------------ERLIISGDLD----PSKGLSV 132 ++ P++P + L+ ERL + DL + ++ Sbjct: 34 AQMTTPQIPGTKPKTVQTVPIRPPALQTPSETADAMAQAERLSLQSDLAWVGQYNGAITG 93 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 + +A+K +Q G P+G+++ A+ + + Sbjct: 94 EVSERMVNAIKEYQKNKGGKPTGVLNPQERAALAETARRKQDSV 137 >gi|194100557|ref|YP_002003882.1| gp43 [Mycobacterium phage Nigel] gi|192758273|gb|ACF05046.1| gp43 [Mycobacterium phage Nigel] Length = 442 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 22/51 (43%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +G+ ++ +++L P+ + + A +A+ +Q R ++ Sbjct: 13 VGDVDPNIVLAKQKLAKYSYGKPANDGTPIYTAEFGAALAEYQRRRNVEID 63 >gi|1658112|gb|AAD13803.1| membane-type 1 metalloproteinase precursor [Oryctolagus cuniculus] Length = 572 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADTDTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|239627713|ref|ZP_04670744.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517859|gb|EEQ57725.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 478 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 6/55 (10%) Query: 311 TKIEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + F +HD F + GC+ + +L + K P Sbjct: 421 YWMPFNG--GIGLHDANWRSKFGGAIYQTSGSHGCINLPPAKAKELYGLVYKGMP 473 >gi|198429635|ref|XP_002120500.1| PREDICTED: similar to matrix metalloproteinase 21 (predicted) [Ciona intestinalis] Length = 854 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 52/157 (33%), Gaps = 18/157 (11%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 + RER G D A+ FQ +GL+ +G++D T+ + + Sbjct: 179 QFRERFKAMG------------DEEFLVALSNFQHANGLNITGVLDEETM-MIMTQLRCG 225 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + L VN + + P + ++G P L Sbjct: 226 VPDLTVNPNITTSTGDPSDSDTESVTITPQINDIIADSGSAEGSGRAEP--PTTAFPYLT 283 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + R++ + P + + + ++ +Y+++ Sbjct: 284 TFSPRMVRKRRFSEPPLVHR---LTERAENAEYMENE 317 >gi|118100493|ref|XP_417326.2| PREDICTED: similar to MMP24 protein [Gallus gallus] Length = 565 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L PS + V+SAV Q +G+ +G++D +TLE M P Sbjct: 5 LKTYGYLLPSDSQMSAAQSGKAVQSAVATMQQFYGIPVTGVLDQTTLEWMKKP 57 >gi|13591995|ref|NP_112318.1| matrix metalloproteinase-14 [Rattus norvegicus] gi|146345458|sp|Q10739|MMP14_RAT RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT-MMP; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|1001927|emb|CAA62897.1| membrane-type metalloproteinase [Rattus norvegicus] gi|47939003|gb|AAH72509.1| Mmp14 protein [Rattus norvegicus] gi|149063898|gb|EDM14168.1| matrix metallopeptidase 14 (membrane-inserted), isoform CRA_a [Rattus norvegicus] gi|149063899|gb|EDM14169.1| matrix metallopeptidase 14 (membrane-inserted), isoform CRA_a [Rattus norvegicus] Length = 582 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G DS T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLQVTGKADSDTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGTEIKANVRRKR 111 >gi|805013|emb|CAA58521.1| MT-MMP [Rattus norvegicus] Length = 582 Score = 38.1 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G DS T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAIQRFYGLQVTGKADSDTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGTEIKANVRRKR 111 >gi|193783707|dbj|BAG53618.1| unnamed protein product [Homo sapiens] Length = 510 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|288557361|ref|NP_001165700.1| matrix metalloproteinase-28 a [Xenopus laevis] gi|122894094|gb|ABM67693.1| matrix metalloproteinase-28 [Xenopus laevis] Length = 496 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L+ + + SAV+ FQ L SG +D+ST++ M P Sbjct: 36 LEKYGYLEETTKQHS--GKQLASAVREFQWLSHLSVSGELDTSTVQQMIQP 84 >gi|92119372|ref|YP_579101.1| hypothetical protein Nham_3965 [Nitrobacter hamburgensis X14] gi|91802266|gb|ABE64641.1| peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family [Nitrobacter hamburgensis X14] Length = 520 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 12/67 (17%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 N +H P P + GCVR+ L T R + ++ Sbjct: 128 NGLALHGGPLPGY------AASHGCVRM--PYGFAEKLFDKT----RIGMRVIISPNDAA 175 Query: 379 PVKLATE 385 PV + Sbjct: 176 PVDFSHP 182 >gi|255958232|ref|NP_001157646.1| matrix metalloproteinase 1 isoform 1 [Tribolium castaneum] gi|270008219|gb|EFA04667.1| matrix metalloproteinase 1 [Tribolium castaneum] Length = 581 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 14/81 (17%) Query: 118 LIISGDLD---PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D + AV+ FQ GLD +G +D TL+ M +P Sbjct: 31 LSQYGYLGGNLRSLNSSALTDERVLRKAVEDFQSFAGLDVTGELDDRTLKEMQLPRCGVK 90 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R K Sbjct: 91 DKVGTGDNRAKRYALQGSRWK 111 >gi|108757447|ref|YP_634531.1| hypothetical protein MXAN_6407 [Myxococcus xanthus DK 1622] gi|108461327|gb|ABF86512.1| hypothetical protein MXAN_6407 [Myxococcus xanthus DK 1622] Length = 381 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + RL G + A++ FQ H L + +D +T + Sbjct: 327 QARLCHLGY--SCGEEDGVMGPWTRRALRDFQRDHDLPVTCELDDATRTRLRA 377 >gi|13027664|gb|AAG34676.2|AF306662_1 matrix metalloprotease MT1-MMP [Cricetulus griseus] Length = 582 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +AV Q +GL +G D T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAVAAMQRFYGLQVTGKADLDTMKAMKRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGTEIKANVRRKR 111 >gi|13236530|ref|NP_077278.1| matrix metalloproteinase-28 isoform 1 preproprotein [Homo sapiens] gi|37538314|sp|Q9H239|MMP28_HUMAN RecName: Full=Matrix metalloproteinase-28; Short=MMP-28; AltName: Full=Epilysin; Flags: Precursor gi|12698338|gb|AAK01480.1|AF219624_1 matrix metalloproteinase-28 precursor [Homo sapiens] gi|12698852|gb|AAK01706.1|AF330002_1 matrix metalloprotease MMP25 [Homo sapiens] gi|37183092|gb|AAQ89346.1| metalloprotease [Homo sapiens] gi|119600534|gb|EAW80128.1| matrix metallopeptidase 28, isoform CRA_a [Homo sapiens] Length = 520 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE----RLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGGQ-----ELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|119387337|ref|YP_918371.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119377912|gb|ABL72675.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 244 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%) Query: 43 SYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 F S + A +A + + PE P Sbjct: 37 LQQEQDRAAFSQAQNTNTLSAYQSYLRQFPNGMYAA--QARDRVERLGGATSRPETPSAA 94 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 ++ ++ RL G + G+ +F A+ L+Q +G ++++ Sbjct: 95 DTASLTAQQRLEIQRRLNALGY--ETNGVDGSFGPGTRRAIALWQRDRNYSQTGALNAAQ 152 Query: 162 LEAM 165 + Sbjct: 153 ANEI 156 >gi|256787530|ref|ZP_05525961.1| membrane protein [Streptomyces lividans TK24] Length = 294 Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHG---LDPSGMV 157 G + V RL +L+ G G + V+ FQ G G Sbjct: 225 FRPGADNPYVTRLGRQLVRKGFGTYYTRGPGPRWGEADRRGVQAFQRAQGWRGGAADGYP 284 Query: 158 DSSTLEAM 165 T + Sbjct: 285 GPETWRRL 292 >gi|225414494|ref|ZP_03761683.1| hypothetical protein CLOSTASPAR_05717 [Clostridium asparagiforme DSM 15981] gi|225041984|gb|EEG52230.1| hypothetical protein CLOSTASPAR_05717 [Clostridium asparagiforme DSM 15981] Length = 466 Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 15/62 (24%), Gaps = 10/62 (16%) Query: 303 GKINAMASTK------IEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRVRNIIDLDV 354 G A S + +HD F + GCV + D Sbjct: 393 GPKKADGSYEYESHVDFWMPFNGGIGLHDANWRGSFGGTIYQTSGSHGCVNL--PPDRAK 450 Query: 355 WL 356 L Sbjct: 451 IL 452 >gi|321314927|ref|YP_004207214.1| putative phage N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|320021201|gb|ADV96187.1| putative phage N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] Length = 80 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 16/30 (53%) Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 AV+ FQ+ +GL+P+G+ T + Sbjct: 47 ETNDAVRRFQLMNGLNPNGIYGPKTKAKLE 76 >gi|255958234|ref|NP_001157647.1| matrix metalloproteinase 1 isoform 2 [Tribolium castaneum] Length = 550 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 14/81 (17%) Query: 118 LIISGDLD---PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D + AV+ FQ GLD +G +D TL+ M +P Sbjct: 31 LSQYGYLGGNLRSLNSSALTDERVLRKAVEDFQSFAGLDVTGELDDRTLKEMQLPRCGVK 90 Query: 169 -----VDLRIRQLQVNLMRIK 184 D R ++ + R K Sbjct: 91 DKVGTGDNRAKRYALQGSRWK 111 >gi|92115679|ref|YP_575408.1| peptidoglycan binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91798573|gb|ABE60948.1| Peptidoglycan-binding domain 1 [Nitrobacter hamburgensis X14] Length = 448 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + Q L+ L +G + ++ + +A+K FQ G +G+++ A+ Sbjct: 51 MTQAARQALQSDLAWTGHY--NGIINGEVSDRLIAAIKAFQKDQGGKQTGVLNPQERGAL 108 Query: 166 N 166 Sbjct: 109 A 109 >gi|299772105|ref|YP_003734131.1| lytic murein transglycosylase family protein [Acinetobacter sp. DR1] gi|298702193|gb|ADI92758.1| lytic murein transglycosylase family protein [Acinetobacter sp. DR1] Length = 430 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 9/101 (8%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 IA + + + WP G S + +++ LI G + Sbjct: 339 IAHLSDRLKGARPFATS--WPTDD-----PGTSRAERREIQQFLINRGY--DIGAVDGLI 389 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 A++ Q R GL+PSG L A ++ Q Sbjct: 390 GDKTRVAIRQEQTRLGLNPSGRAGQQILRAFRQEQAQKMMQ 430 >gi|225452578|ref|XP_002280805.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 321 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAY--------VESAVKLFQMRHGLDPSGMV 157 + + +L++ L G L + +ESA+K +Q + L +G + Sbjct: 56 DKVKGIHKLKKYLEQFGYLSYNSHSKNQIRTDDDDYFDDLLESAIKSYQTNYHLKATGKL 115 Query: 158 DSSTLEAMNVP 168 DS T+ M Sbjct: 116 DSETVSEMMRS 126 >gi|326680219|ref|XP_001924042.3| PREDICTED: matrix metalloproteinase-15 [Danio rerio] Length = 623 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L + + + SA++ Q +GL +G +DS TL AM P Sbjct: 39 LRTYGYLSQASRQMSTMQSSQILSSAIRDMQRFYGLQETGHMDSETLRAMKRP 91 >gi|311104883|ref|YP_003977736.1| lytic murein transglycosylase family protein [Achromobacter xylosoxidans A8] gi|310759572|gb|ADP15021.1| lytic murein transglycosylase family protein [Achromobacter xylosoxidans A8] Length = 415 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 12/92 (13%) Query: 81 AIAFYQDILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 AIA D L GG WP G S + L+ LI G Sbjct: 326 AIAHLSDRLRGGGPLAQAWPTDD-----PGLSRAQRRELQRLLIARGY--EIGEPDGMIG 378 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 A++ Q GL P G +L+A+ Sbjct: 379 KRTREALQTVQRELGLRPDGRAGLKSLQALQA 410 >gi|218130612|ref|ZP_03459416.1| hypothetical protein BACEGG_02201 [Bacteroides eggerthii DSM 20697] gi|217986956|gb|EEC53287.1| hypothetical protein BACEGG_02201 [Bacteroides eggerthii DSM 20697] Length = 171 Score = 37.7 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 4/65 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL----SVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G + L L G D FD +E ++ Q ++G+ G+ Sbjct: 106 GMYGADIDMLAAILDSKGLYDKQHVTKIKGMTCFDLRMEQCIRNIQAKYGMTVDGVCTRE 165 Query: 161 TLEAM 165 L + Sbjct: 166 VLSKI 170 >gi|332846033|ref|XP_001150678.2| PREDICTED: matrix metalloproteinase-15 isoform 1 [Pan troglodytes] Length = 669 Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T E M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMR 182 +++ NL R Sbjct: 117 FGVRVKANLRR 127 >gi|222086465|ref|YP_002544999.1| membrane-bound lytic murein transglycosylase protein [Agrobacterium radiobacter K84] gi|221723913|gb|ACM27069.1| membrane-bound lytic murein transglycosylase protein [Agrobacterium radiobacter K84] Length = 414 Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 13/147 (8%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 +G+ + + L + +G + + T Sbjct: 281 WFQLGVKPRDGNTNFGSLPAALILPQGRKGPAFLTYPNYNAYLGWNQSFIYTTSAAYFAT 340 Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + G P G + V ++ L+ +L G + + Sbjct: 341 RLS-----------GAPTYNKGMPEEGLNDVDMKALQTKLQARGY--DVGKIDGILGSGT 387 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A++ Q R GL G + L A+ Sbjct: 388 RVAIQKEQFRLGLPADGWATQALLSAL 414 >gi|160875817|ref|YP_001555133.1| lytic murein transglycosylase [Shewanella baltica OS195] gi|160861339|gb|ABX49873.1| lytic murein transglycosylase [Shewanella baltica OS195] gi|315268008|gb|ADT94861.1| lytic murein transglycosylase [Shewanella baltica OS678] Length = 438 Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 2/78 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P S V++L+ +L +G + ++ FQ Sbjct: 362 NGGLPLTVSPPEQPRLSREQVKQLQAKLNEAGF--DVGKPDGVLGRNSVAGLQAFQRSKQ 419 Query: 151 LDPSGMVDSSTLEAMNVP 168 + G A+ + Sbjct: 420 MIADGFPSQEVFSALGLS 437 >gi|124504280|gb|AAI28677.1| Mmp-9th protein [Xenopus laevis] Length = 674 Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +SV V L+ G L +G + ++ A+ Q + GL +G +D Sbjct: 33 PGEIRNNMTSVEVAE--WYLVKFGYLPLQQGSNHH--VSLKKALSQMQSKLGLKVTGNLD 88 Query: 159 SSTLEAMNVP 168 + TL+AM P Sbjct: 89 AETLDAMKTP 98 >gi|27806001|ref|NP_776815.1| matrix metalloproteinase-14 precursor [Bos taurus] gi|75056123|sp|Q9GLE4|MMP14_BOVIN RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|11055605|gb|AAG28170.1|AF290429_1 membrane-type matrix metalloprotease 1 [Bos taurus] Length = 582 Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQHGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|298527991|ref|ZP_07015395.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511643|gb|EFI35545.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] Length = 418 Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 14/95 (14%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNS--------SVSVQRLRERLII 120 + + E + +K + + R P PL G S + ++ RL Sbjct: 315 LFTPEKDYEGQKKVQRERMSQQREHTPR--EGPLSRGESVLDTSDRSDARI--IQTRLAE 370 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G + + + A++ FQ GL+ SG Sbjct: 371 LGYY--NMIIDGLWGPGSRGALEQFQRSSGLEASG 403 >gi|119605820|gb|EAW85414.1| hCG15613, isoform CRA_b [Homo sapiens] Length = 235 Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A+K+ Q GL +G +D T+ M P Sbjct: 36 LTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKP 88 >gi|73992282|ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor (MMP-24) (Membrane-type matrix metalloproteinase 5) (MT-MMP 5) (Membrane-type-5 matrix metalloproteinase) (MT5-MMP) [Canis familiaris] Length = 626 Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 66 LKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 118 >gi|323516092|gb|ADX90473.1| membrane-bound lytic murein transglycosylase B [Acinetobacter baumannii TCDC-AB0715] Length = 378 Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S + +++ LI G + A++ Q R GL+P+G L Sbjct: 309 PGTSRAERREIQQFLINRGY--DIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILR 366 Query: 164 AMNVPVDLRIRQ 175 A ++ Q Sbjct: 367 AFRQEQARKMMQ 378 >gi|222085601|ref|YP_002544131.1| hypothetical protein Arad_1877 [Agrobacterium radiobacter K84] gi|221723049|gb|ACM26205.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 422 Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 14/148 (9%) Query: 95 PELPIRPL-----HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 P + PL G +V+ L+ L G + A+ F+ H Sbjct: 205 PPVDQAPLSILMTRRGLR-ENVRDLQGLLNALGF--ATGTPDGLLGPATVQAIGDFKKAH 261 Query: 150 GLDPSG-MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 G+ SG +V + ++A+ ++R + + Sbjct: 262 GITTSGSLVSPALMKAVYAAAGKGEPPNGAIMVRQNFKPLFEAPAIIAEPQEALGTHFFT 321 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRIN 236 N I G+ D L ++ Sbjct: 322 AN-----TVDRINGKTDWFGVTLEDDLS 344 >gi|281182734|ref|NP_001162479.1| matrix metalloproteinase-24 [Papio anubis] gi|297259948|ref|XP_001100890.2| PREDICTED: matrix metalloproteinase-24 [Macaca mulatta] gi|164623742|gb|ABY64668.1| matrix metallopeptidase 24 (predicted) [Papio anubis] Length = 598 Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 38 LKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 90 >gi|27376609|ref|NP_768138.1| transglycolase [Bradyrhizobium japonicum USDA 110] gi|27349750|dbj|BAC46763.1| bll1498 [Bradyrhizobium japonicum USDA 110] Length = 515 Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L++ L G F A++ FQ G+ G S LE + Sbjct: 462 ELQQLLAQRGFYK--GTPDGQFGGQTREALRNFQASIGVPADGFASSDVLERLR 513 >gi|115610712|ref|XP_781575.2| PREDICTED: similar to matrix metalloproteinase 14 [Strongylocentrotus purpuratus] gi|115961219|ref|XP_001188043.1| PREDICTED: similar to matrix metalloproteinase 14 [Strongylocentrotus purpuratus] Length = 509 Score = 37.7 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L S + V A+K FQ +D +G +D+ T+ M +P Sbjct: 11 LMNYGYLKQSDMANGQLTTEGDVVKALKQFQYMANIDETGTLDNDTMRMMKMP 63 >gi|254437459|ref|ZP_05050953.1| ErfK/YbiS/YcfS/YnhG family [Octadecabacter antarcticus 307] gi|198252905|gb|EDY77219.1| ErfK/YbiS/YcfS/YnhG family [Octadecabacter antarcticus 307] Length = 258 Score = 37.7 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 15/103 (14%) Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP---------PNFIFRQDPGKINAM 308 R+ P + + + ++ E W + F + G + + Sbjct: 96 QARRYPIAVGRQGLSLNRPTVVQLKREWPGWTPTQNMLRTQPEVYGPFARGVEGGLASPL 155 Query: 309 ASTKIE-FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN 348 + + F + +T+ +H T + N ++GC+R+ N Sbjct: 156 GARALYLFQNGRDTHFRIHGTNDLSSIGNSG---SAGCIRMFN 195 >gi|147807821|emb|CAN73130.1| hypothetical protein VITISV_030258 [Vitis vinifera] Length = 437 Score = 37.7 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAY--------VESAVKLFQMRHGLDPSGMV 157 + + +L++ L G L + +ESA+K +Q + L +G + Sbjct: 56 DKVKGIHKLKKYLEQFGYLSYNSHSKNQIRTDDDDYFDDLLESAIKSYQTNYHLKATGKL 115 Query: 158 DSSTLEAMNVP 168 DS T+ M Sbjct: 116 DSETVSEMMRS 126 >gi|291561852|emb|CBL40652.1| Uncharacterized protein conserved in bacteria [butyrate-producing bacterium SS3/4] Length = 459 Score = 37.7 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 7/88 (7%) Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD----PGKINAMASTKIEFYSRNN 320 Y + +ID V + P ++Q G+ A A K Sbjct: 351 YFYKDGKVIIDSPFVSGNVSKNYTTPPGLFELYYKQKDRVLKGEDYA-APVKYWMPFNGG 409 Query: 321 TYMHDTPEPILFN--NVVRFETSGCVRV 346 +HD F + GC+ + Sbjct: 410 IGLHDADWRSKFGGTIYQTNGSHGCINL 437 >gi|298290355|ref|YP_003692294.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296926866|gb|ADH87675.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 225 Score = 37.7 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 37/194 (19%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + Q+ +R + + ++V++ A V LR V VG+ + Sbjct: 55 PAVDLSQIDPRFLRREVAYATREEPGTIVVDVEARYAYLVMENGRALRYGVGVGKEEGFN 114 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 + I R P W +I+++ P+ + G + + Sbjct: 115 FRGAATIARKAEWPRWTPTPDMIRRE--------PERYAKYAGGLPGGPGNPLGPRALYL 166 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV-- 346 + + ++R +H T EP +SGC+R+ Sbjct: 167 YR-DGRDTLYR-----------------------LHGTIEPWTIGT---MVSSGCIRLLN 199 Query: 347 RNIIDLDVWLLKDT 360 ++IIDL + + Sbjct: 200 QDIIDLYRRVPAGS 213 >gi|115524938|ref|YP_781849.1| lytic murein transglycosylase [Rhodopseudomonas palustris BisA53] gi|115518885|gb|ABJ06869.1| lytic murein transglycosylase [Rhodopseudomonas palustris BisA53] Length = 403 Score = 37.7 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLEAMNV 167 VQ ++ RL G + G AV+ FQ++ G L G L + Sbjct: 344 AEVQEMQTRLTAQGF--DTGGTDGRVGNDTMKAVRDFQLKAGLLPADGYGGLKVLARLRQ 401 >gi|110633667|ref|YP_673875.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110284651|gb|ABG62710.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 139 Score = 37.7 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 5/51 (9%) Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWL 356 M+ + +H T ++ R + GCVR+ N L + Sbjct: 78 MSPMPFSIFYHRGYAIHGT---YAVKSLGRRASHGCVRLHPDNAAKLYSLV 125 >gi|167463502|ref|ZP_02328591.1| YkuG [Paenibacillus larvae subsp. larvae BRL-230010] Length = 668 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%) Query: 47 IVNDRFDNFLARVDMGID---SDIP--IISKETIAQTEKAIAFYQDILSRGG---WPELP 98 ++ I + P SK I+ + + + G Sbjct: 7 DAQVWLNSTYGNNSKYIRVKETGYPGTATSKALISALQIELG-LSSVTGNFGDMTSKACD 65 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PL G++ V+ L+ L G S F+ + ++A+K Q GL + Sbjct: 66 ANPLGSGSTGNKVKLLQYGLYCKGYNPRS--TDGVFNQHTQNALKSIQQDAGLSEN 119 >gi|71278899|ref|YP_268059.1| putative peptidoglycan-binding protein [Colwellia psychrerythraea 34H] gi|71144639|gb|AAZ25112.1| putative peptidoglycan-binding protein [Colwellia psychrerythraea 34H] Length = 427 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 3/74 (4%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-V 167 ++ L+ +L G + + A++ FQ++H L G + +N V Sbjct: 355 AQMKNLQSQLNSLGF--ETGEPDGIWGPKSRQAIRSFQLQHQLIADGYPNKEVFVKINLV 412 Query: 168 PVDLRIRQLQVNLM 181 R +N Sbjct: 413 TNKTRDNMSNINQE 426 >gi|15964289|ref|NP_384642.1| hypothetical protein SMc02231 [Sinorhizobium meliloti 1021] gi|15073466|emb|CAC45108.1| Hypothetical protein SMc02231 [Sinorhizobium meliloti 1021] Length = 229 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W P + + + +V+ ++ L +G + +A+K FQ G +P Sbjct: 156 WVGPPTKTATVDMT-RAVRNIQAILNNNGF--DAGKPDGQVGQKTTAAIKAFQKSVGQEP 212 Query: 154 SGMVDSSTLEAM 165 +G + + + Sbjct: 213 TGEITDGLVREL 224 >gi|319781607|ref|YP_004141083.1| lytic murein transglycosylase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167495|gb|ADV11033.1| lytic murein transglycosylase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 406 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L++RL G D ++A+ FQ + GL G L+ + Sbjct: 353 ELQKRLSQHGLYD--GKFDGKIGDGSKTAIMAFQAKAGLTQDGYPSMEVLKWLRQ 405 >gi|260427736|ref|ZP_05781715.1| membrane-bound lytic murein transglycosylase B [Citreicella sp. SE45] gi|260422228|gb|EEX15479.1| membrane-bound lytic murein transglycosylase B [Citreicella sp. SE45] Length = 415 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 L+ +L +G F + E+A++ +Q GL +G L Sbjct: 363 LQAQLNRAGY--DVGTPDGVFGSKTEAAIRSYQASVGLPVTGEPSRDLL 409 >gi|307307025|ref|ZP_07586764.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium meliloti BL225C] gi|306901965|gb|EFN32564.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium meliloti BL225C] Length = 1220 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W P + + + +V+ ++ L +G + +A+K FQ G +P Sbjct: 1147 WVGPPTKTATVDMT-RAVRNIQAILNNNGF--DAGKPDGQVGQKTTAAIKAFQKSVGQEP 1203 Query: 154 SGMVDSSTLEAM 165 +G + + + Sbjct: 1204 TGEITDGLVREL 1215 >gi|166831586|gb|ABY90111.1| matrix metalloproteinase 24 preproprotein (predicted) [Callithrix jacchus] Length = 564 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 4 LKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 56 >gi|118100110|ref|XP_415771.2| PREDICTED: similar to matrix metalloproteinase-28 [Gallus gallus] Length = 498 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%) Query: 107 SSVSVQRLRER----LIISGDL--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 +V+ R R L G L LS +A++ FQ L PSG++D Sbjct: 19 RGAAVRGERRRAELFLQKYGYLGAPQPGRLSPV---EFTAALRDFQRVSHLRPSGVLDVP 75 Query: 161 TLEAMNVP 168 TL M P Sbjct: 76 TLRQMGRP 83 >gi|307320679|ref|ZP_07600092.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium meliloti AK83] gi|306893714|gb|EFN24487.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium meliloti AK83] Length = 1220 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W P + + + +V+ ++ L +G + +A+K FQ G +P Sbjct: 1147 WVGPPTKTATVDMT-RAVRNIQAILNNNGF--DAGKPDGQVGQKTTAAIKAFQKSVGQEP 1203 Query: 154 SGMVDSSTLEAM 165 +G + + + Sbjct: 1204 TGEITDGLVREL 1215 >gi|149051938|gb|EDM03755.1| rCG35535 [Rattus norvegicus] Length = 531 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P+ + + ++ A+K+ Q GL +G +D T+ M+ P Sbjct: 6 LTRYGYLPPADPVHAQMQSLGKLQDAIKVMQRFAGLPETGQMDPITIATMHKP 58 >gi|169628804|ref|YP_001702453.1| hypothetical protein MAB_1714 [Mycobacterium abscessus ATCC 19977] gi|169240771|emb|CAM61799.1| Conserved hypothetical protein (cobalt transport protein?) [Mycobacterium abscessus] Length = 271 Score = 37.7 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 1/94 (1%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 + L+L P+ + +I R R I + +++ A + Sbjct: 164 TLALALRSFPMLSDEFRVLIAARRLRPPQVREGRRGRRGLRWIAEAVDMLTAAITAALRR 223 Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 A I +RGG ++ P G + + L Sbjct: 224 ASEMGDAITARGGTGQISAHPARPGLNDA-IALL 256 >gi|146340911|ref|YP_001205959.1| putative peptidase [Bradyrhizobium sp. ORS278] gi|146193717|emb|CAL77734.1| conserved hypothetical protein; putative peptidase (caspase-like) [Bradyrhizobium sp. ORS278] Length = 475 Score = 37.7 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 3/71 (4%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 ++ RL G S FD + +K +Q G SG + +A+ + Sbjct: 365 VQRRLTGLGF---DTKTSGKFDEATRAVLKRWQAARGYPSSGYLTKLQHKALLAEIIPAA 421 Query: 174 RQLQVNLMRIK 184 + + Sbjct: 422 STASASEEEPR 432 >gi|255320738|ref|ZP_05361914.1| membrane-bound lytic murein transglycosylase B [Acinetobacter radioresistens SK82] gi|262380641|ref|ZP_06073794.1| lytic murein transglycosylase B [Acinetobacter radioresistens SH164] gi|255302208|gb|EET81449.1| membrane-bound lytic murein transglycosylase B [Acinetobacter radioresistens SK82] gi|262297589|gb|EEY85505.1| lytic murein transglycosylase B [Acinetobacter radioresistens SH164] Length = 427 Score = 37.7 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 12/92 (13%) Query: 81 AIAFYQD-ILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 AIA D + +G WP G S + +++ L+ G + Sbjct: 338 AIAHLSDRLQGQGPFLTAWPTDDA-----GTSRAERREIQQFLLKKGY--DIGAVDGLIG 390 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 A++ Q R GL+P+G L A+ Sbjct: 391 DKTRQAIRQEQQRLGLNPTGRAGQQILRALRA 422 >gi|148258168|ref|YP_001242753.1| putative membrane-bound lytic murein transglycosylase signal peptide [Bradyrhizobium sp. BTAi1] gi|146410341|gb|ABQ38847.1| Putative membrane-bound lytic murein transglycosylase, putative signal peptide [Bradyrhizobium sp. BTAi1] Length = 464 Score = 37.7 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L++ L G F A++ FQ G G + LE + Sbjct: 411 ELQQLLAERGFY--RGTPDGQFGGQTREALRNFQAAIGAPADGFATTDVLERLR 462 >gi|220922973|ref|YP_002498275.1| peptidoglycan-binding domain 1 protein [Methylobacterium nodulans ORS 2060] gi|219947580|gb|ACL57972.1| Peptidoglycan-binding domain 1 protein [Methylobacterium nodulans ORS 2060] Length = 278 Score = 37.7 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 99 IRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGM 156 PL G +V+ L++ +I +G KG F A++ F+ ++ L SG+ Sbjct: 22 GPPLQWGEPDHAAVKILQQAIIAAGF-PIEKGADGNFGRLTAEAIRAFEAKYRLGPVSGV 80 Query: 157 VDSSTLEAMN 166 + + ++ Sbjct: 81 AGRAVIAMLD 90 >gi|302335955|ref|YP_003801162.1| ErfK/YbiS/YcfS/YnhG family protein [Olsenella uli DSM 7084] gi|301319795|gb|ADK68282.1| ErfK/YbiS/YcfS/YnhG family protein [Olsenella uli DSM 7084] Length = 464 Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 17/73 (23%) Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRF--ETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + F N+ +HD F + + GCV + P Sbjct: 405 NYWMPF-VGNSVGLHDATWRSRFGGTIYAWNGSHGCVNL--------------PYDDAER 449 Query: 368 IEEVVKTRKTTPV 380 + E++ T V Sbjct: 450 LYELINVGDTVYV 462 >gi|282899816|ref|ZP_06307778.1| OpcA [Cylindrospermopsis raciborskii CS-505] gi|281195298|gb|EFA70233.1| OpcA [Cylindrospermopsis raciborskii CS-505] Length = 456 Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L +G + + + +++++ Q +HGL +G+ S T+ Sbjct: 65 LAATGFY--TGPIDGILGPHTKTSIREVQKKHGLSETGIPTSETIS 108 >gi|153010008|ref|YP_001371223.1| peptidoglycan-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561896|gb|ABS15394.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi ATCC 49188] Length = 328 Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 9/101 (8%) Query: 69 IISKETIAQTEKAIAFYQDIL---SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD 125 ++ ET+++ + A+A Y+ + P + + SS + R++ L G + Sbjct: 228 VLKTETVSKPKPALASYEKPVPKKQVAATPAVQSVKV----SSQDIIRVQAGLKAFG--N 281 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + ++ + AV+ FQ + +G +D++ + M Sbjct: 282 DTVPVNGQPGKTTQEAVREFQKLFSMPVTGEIDATLITKMR 322 >gi|229590705|ref|YP_002872824.1| hypothetical protein PFLU3251 [Pseudomonas fluorescens SBW25] gi|229362571|emb|CAY49478.1| putative exported protein [Pseudomonas fluorescens SBW25] Length = 201 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V R++ L++ + A+ FQM GL +G +D+ +L A+ Sbjct: 139 QKSNLVIRVQTALMVRQYY--QGTIDGVMGKATRGALMAFQMDSGLTVNGRMDTPSLNAL 196 Query: 166 NV 167 + Sbjct: 197 GI 198 >gi|163735680|ref|ZP_02143111.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] gi|161391108|gb|EDQ15446.1| ErfK/YbiS/YcfS/YnhG family protein [Roseobacter litoralis Och 149] Length = 208 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Query: 301 DPGKINAMASTKIEF--YSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 D G N + S + +R+ ++ +PEP R +SGCVR+ Sbjct: 134 DAGPTNPLGSRALYLYVGNRDTYRRIYGSPEPRSIG--GRA-SSGCVRM 179 >gi|114563484|ref|YP_750997.1| lytic murein transglycosylase [Shewanella frigidimarina NCIMB 400] gi|114334777|gb|ABI72159.1| lytic murein transglycosylase [Shewanella frigidimarina NCIMB 400] Length = 415 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V++L+++L +G ++ FQ + GL G D T A+ + Sbjct: 359 VKQLQQKLNDAGF--DVGKPDGILGRNSVLGLQAFQQQKGLIADGFPDVQTFNALGI 413 >gi|117924237|ref|YP_864854.1| sporulation domain-containing protein [Magnetococcus sp. MC-1] gi|117607993|gb|ABK43448.1| Sporulation domain protein [Magnetococcus sp. MC-1] Length = 740 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 47/165 (28%), Gaps = 13/165 (7%) Query: 98 PIRPLHLGNSSVS---VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R L L+ L ++ +A+K FQ + L S Sbjct: 478 PERWLAPDQVGPRNEASAHLQRMLAMTPFYK--GLPDGMIGPESLNAIKAFQRAYDLPES 535 Query: 155 GMVDSST------LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 G D+ T + + R++Q + ++ + + ++ P Sbjct: 536 GQPDAETQFMLAFYVRKQLQLSERLQQNKAHIPQASNVAVAAQLDPTMIELQPLRHQPVR 595 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 N + + + + ++ ++ N + + Sbjct: 596 HN--LTRTLPLSPLQPSQPLAVVAPLDEGVIPNRTGGDNTAPAAQ 638 >gi|146276109|ref|YP_001166268.1| lytic murein transglycosylase [Rhodobacter sphaeroides ATCC 17025] gi|145554350|gb|ABP68963.1| lytic murein transglycosylase [Rhodobacter sphaeroides ATCC 17025] Length = 421 Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 13/82 (15%) Query: 91 RGGWPELPIRPLHLGNSS---VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 GGWP G+ + L+ L +G + G +A++ +Q Sbjct: 350 TGGWPR--------GDRALAAAERTELQRLLTAAGF--DTGGADGMIGPNTLAALRAWQA 399 Query: 148 RHGLDPSGMVDSSTLEAMNVPV 169 GL G + + L + Sbjct: 400 ARGLVADGYANEAILNRLREGA 421 >gi|320162414|ref|YP_004175639.1| hypothetical protein ANT_30130 [Anaerolinea thermophila UNI-1] gi|319996268|dbj|BAJ65039.1| hypothetical protein ANT_30130 [Anaerolinea thermophila UNI-1] Length = 358 Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 23/152 (15%) Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE--KGKEVFVEEVDWNSPEPPNFIFRQDP 302 +P + ++ + Y D + + GK + D+++P+ R+ P Sbjct: 214 TVPPEAKRIEVWLKDQLVIAYENDEPVLITRAATGGKFID---GDYSTPQGRYLTNRKRP 270 Query: 303 GKINAMAST------------KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + A + + + + H T F + GC+ + Sbjct: 271 SRHMASGDLAAPNSYDLPGVPWVCYLTESGISFHGTYWHNDFGKPR---SHGCINLSPAA 327 Query: 351 DLDVWLLKDT-PTWSRYHIEEVVKTRKTTPVK 381 W+ + T P + T + V+ Sbjct: 328 --ARWIYRWTHPAVPFDQVTWWEDTGTSVVVR 357 >gi|239994683|ref|ZP_04715207.1| membrane-bound lytic transglycolase-related protein [Alteromonas macleodii ATCC 27126] Length = 428 Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 8/81 (9%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+LP + L+ +L G ++ +Q+ + + Sbjct: 356 PDLPAYNRK------DIIALQSKLNDLGF--DVGKPDGIIGPATREGIRNYQISNNMIAD 407 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G + A+N+ + + Sbjct: 408 GFPGLEVMAALNIDLASKANS 428 >gi|116251151|ref|YP_766989.1| peptidoglycan binding transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255799|emb|CAK06880.1| putative peptidoglycan binding transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 13/152 (8%) Query: 25 SLVEKPIHASVLDEIINESY-----HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 S+ I +V+ + + + F + + + P ++ T Sbjct: 59 SIAGGAITFAVIFSFVAANALWYQPGLHPHPIFRTRDPQSPTVLGARRPAEEQQG-DVTT 117 Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 I QD + P G S V ++++L+ G + Sbjct: 118 FRIERPQDTATTNATPAPAA----PGQQPSQLVMDIQQQLVRRGLY--NGIPDGIIGPRT 171 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 +A+ F+ G+ +G L A+ Sbjct: 172 SAAILFFEETVGMTQTGDPTPDVLVALKTDAA 203 Score = 37.3 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V ++++ L + G+ +A++ FQ + L G + + L+ + Sbjct: 259 VLKIQKGLSNMAY--ANVGVDGVAGEQTRAAIRHFQKHYNLPEDGEPNQAVLKKLK 312 >gi|4191265|emb|CAA09055.1| MT5-MMP protein [Mus musculus] Length = 614 Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 54 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 106 >gi|238014842|gb|ACR38456.1| unknown [Zea mays] Length = 243 Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQ 146 R L G V+ ++E L G + + +F + E AVK +Q Sbjct: 176 RTLRTGAEGEDVRAMQEALQKLGFYSGEEDMEYSSFSSGTERAVKTWQ 223 >gi|115668714|ref|XP_786545.2| PREDICTED: similar to matrix metalloproteinase 14 [Strongylocentrotus purpuratus] gi|115931871|ref|XP_001182435.1| PREDICTED: similar to matrix metalloproteinase 14 [Strongylocentrotus purpuratus] Length = 526 Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 21/125 (16%) Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP---------- 168 S DL S + A++LFQ +GL+ +G++ + + M +P Sbjct: 35 FESNDLSTGHLRSQ---DSLNDAIRLFQRMNGLNETGILTAEVQDLMQMPRCGLPDNTGT 91 Query: 169 -VDLRIRQLQVNLMRI-----KKLLEQKMGL--RYVLVNIPAASLEAVENGKVGLRSTVI 220 R R+ ++ ++ LE R + I A +L+ + V Sbjct: 92 QAINRARRYALSDVKWFKTDLTWRLENTTPDLRRSSVREIIARALKHWSDASQLTFREVQ 151 Query: 221 VGRVD 225 G D Sbjct: 152 SGDAD 156 >gi|163733324|ref|ZP_02140767.1| peptidoglycan binding domain protein, putative [Roseobacter litoralis Och 149] gi|161393112|gb|EDQ17438.1| peptidoglycan binding domain protein, putative [Roseobacter litoralis Och 149] Length = 590 Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 + + + I ++ ++ + ++ VD +D++ P ++ + +Q A Sbjct: 118 AIGSLSERITPQIVPPVLAGEQTAQLD--------SVDGPVDTETPAQARRSESQLTAAQ 169 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 L+ L +G + + AF +A+ Sbjct: 170 RR----------------------------ELQTALQWAGVY--NAAIDGAFGRGTRNAM 199 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 +Q +GL+ +G++ + + + L + ++R Sbjct: 200 ATWQRNNGLEATGVLTTQQRARLIAAYTAILDGLDMRMVR 239 >gi|119386487|ref|YP_917542.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119377082|gb|ABL71846.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 264 Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 12/24 (50%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 V+ FQ GL G+ TL A+ Sbjct: 196 VRRFQKEAGLTADGIAGPKTLAAL 219 >gi|56698438|ref|YP_168812.1| peptidoglycan-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680175|gb|AAV96841.1| peptidoglycan-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 385 Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 D L GG P G + + L+ RL +G + G + +A+ Sbjct: 303 HLSDRLKGGGPFRASFGPDETGLTLEERKELQSRLTAAGY--DTGGADGVIGSKSTAAIS 360 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 +Q GL +G L + Sbjct: 361 DYQRARGLAVTGTPSVELLRQLR 383 >gi|39933976|ref|NP_946252.1| lytic murein transglycosylase [Rhodopseudomonas palustris CGA009] gi|39647823|emb|CAE26343.1| putative transglycolase [Rhodopseudomonas palustris CGA009] Length = 465 Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L++ L G F + SA++ FQ G G LE + Sbjct: 412 ELQQLLAQRGFY--RGTPDGQFGSETRSALRNFQASIGAPADGFATGEMLERLR 463 >gi|327283195|ref|XP_003226327.1| PREDICTED: matrix metalloproteinase-17-like [Anolis carolinensis] Length = 562 Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+ Q GL+ +G++D +TL+ M P Sbjct: 22 LTRFGYLLPPDPNTGQLQTQEELAKAIMTMQQFGGLEATGILDEATLKLMKTPRCSLPDL 81 Query: 176 LQVNLMRIK 184 LQ ++ Sbjct: 82 LQSEARTLR 90 >gi|192289396|ref|YP_001990001.1| lytic murein transglycosylase [Rhodopseudomonas palustris TIE-1] gi|192283145|gb|ACE99525.1| lytic murein transglycosylase [Rhodopseudomonas palustris TIE-1] Length = 461 Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L++ L G F + SA++ FQ G G LE + Sbjct: 408 ELQQLLAQRGFY--RGTPDGQFGSETRSALRNFQASIGAPADGFATGEMLERLR 459 >gi|221122763|ref|XP_002164594.1| PREDICTED: similar to LOC100127631 protein [Hydra magnipapillata] Length = 359 Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LI G +P FDA + A+K +Q + L +G +D T E MN P Sbjct: 30 LINLGYYNPFA-----FDASNNLTEAIKDYQSFYNLPKTGELDQLTTEIMNKP 77 >gi|332668953|ref|YP_004451961.1| peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] gi|332337991|gb|AEE44574.1| Peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] Length = 365 Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L G + V++++ + +G L + G+ F+A V+ +Q R + G V Sbjct: 81 TLARGATGDPVRKVQHAVHDAGVLFRTFGVDGIFEAETARRVRQYQQRESVGGDTAGAVG 140 Query: 159 SSTLEAMNV 167 + T+ +++ Sbjct: 141 AHTIRSLDA 149 >gi|194334076|ref|YP_002015936.1| ErfK/YbiS/YcfS/YnhG family protein [Prosthecochloris aestuarii DSM 271] gi|194311894|gb|ACF46289.1| ErfK/YbiS/YcfS/YnhG family protein [Prosthecochloris aestuarii DSM 271] Length = 235 Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 28/128 (21%) Query: 254 DMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPNFIFRQDPGK------ 304 + + + +Q Y + I + G W PGK Sbjct: 112 EYVPIPKQISDYRGEREIRVFLALQYFGAYENGAIAFWGPVSSGKKSRPTRPGKFVVNYK 171 Query: 305 ---------INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR--VRNIIDLD 353 NA I + ++H+ P + GC+R + + L Sbjct: 172 QRYKRSIKYHNAPMPYAINYNG--GYFIHEQSLPGY------PASHGCIRLLMSDAKKLF 223 Query: 354 VWLLKDTP 361 W+ P Sbjct: 224 YWIKIGDP 231 >gi|114662852|ref|XP_523380.2| PREDICTED: matrix metalloproteinase 15 isoform 2 [Pan troglodytes] Length = 671 Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L + G L + + SA+ Q +G+ +G++D T E M P Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRP 109 >gi|89052862|ref|YP_508313.1| lytic murein transglycosylase [Jannaschia sp. CCS1] gi|88862411|gb|ABD53288.1| Lytic murein transglycosylase [Jannaschia sp. CCS1] Length = 390 Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P R G ++RL+ L G + A +AV+ Q R GL Sbjct: 320 GAPVFDARNPEPGLGGDQMRRLQTALQARGY--DVGRIDGILGAGTRAAVREEQRRLGLP 377 Query: 153 PSGMVDSSTLEAM 165 S+ L A+ Sbjct: 378 ADAWPTSALLNAL 390 >gi|83313131|ref|YP_423395.1| hypothetical protein amb4032 [Magnetospirillum magneticum AMB-1] gi|82947972|dbj|BAE52836.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 185 Score = 37.3 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 15/98 (15%) Query: 104 LGNSSV----SVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+S V ++ + G DP GL+ D + +K FQ H L+ G++ Sbjct: 9 IGSSYPADPGDVLNVKTSMNNLGYYDPPAAYGLTPWPDTPMFDGIKNFQKDHDLEVDGIM 68 Query: 158 DS---------STLEAMNVPVDLRIRQLQVNLMRIKKL 186 L QL N L Sbjct: 69 HPDGPTVTTMNKGLAQGEDSPSDGNEQLAYNPAAANLL 106 >gi|47225198|emb|CAF98825.1| unnamed protein product [Tetraodon nigroviridis] Length = 732 Score = 37.3 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L+ L G L + ++SA+ Q R+GL+ +G +DS+T+E Sbjct: 1 LQAWLQRYGYLPSVDPRMSVLRSARVMQSAIAAMQRRYGLNVTGTLDSNTVERWAPGAAA 60 >gi|189069202|dbj|BAG35540.1| unnamed protein product [Homo sapiens] Length = 582 Score = 37.3 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L+ G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LLQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|148674197|gb|EDL06144.1| matrix metallopeptidase 24 [Mus musculus] Length = 570 Score = 37.3 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 10 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 62 >gi|115496089|ref|NP_001069451.1| matrix metalloproteinase-19 [Bos taurus] gi|115305300|gb|AAI23723.1| Matrix metallopeptidase 19 [Bos taurus] gi|296487677|gb|DAA29790.1| matrix metalloproteinase 19 [Bos taurus] Length = 499 Score = 37.3 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L F V A++ FQ L SG +D +T M P Sbjct: 33 LLQYGYLQKPLEGPDNFRPEDVIEALRAFQEASELPVSGQLDDATSARMRQP 84 >gi|332560179|ref|ZP_08414501.1| hypothetical protein RSWS8N_14000 [Rhodobacter sphaeroides WS8N] gi|332277891|gb|EGJ23206.1| hypothetical protein RSWS8N_14000 [Rhodobacter sphaeroides WS8N] Length = 254 Score = 37.3 bits (85), Expect = 4.7, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 295 NFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 + G N + + + Y +H T + + ++GC+R+ ++ Sbjct: 138 PYAAGLPGGLQNPLGARALYLYRGGRDTMFRIHGTVQNASIGH---ATSAGCIRLFNQDA 194 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRK 376 IDL + TP R E + + Sbjct: 195 IDLYGRVNLGTPVKVRTEAESLALEGQ 221 >gi|327271606|ref|XP_003220578.1| PREDICTED: matrix metalloproteinase-24-like [Anolis carolinensis] Length = 604 Score = 37.3 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDL-DPSKGLSVAF-DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L +S ++SAV Q +G+ +G++D +T+ M P Sbjct: 44 LKTYGYLLSSDTRMSALHSGKVMQSAVTTMQRFYGIPVTGVLDQTTIAWMKKP 96 >gi|291084888|ref|YP_003495171.1| gp30 LysB [Mycobacterium phage Ardmore] gi|262262724|gb|ACY39912.1| gp30 LysB [Mycobacterium phage Ardmore] Length = 332 Score = 37.3 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--------GLDP 153 L G+ S +++++ + + + +D + + V Q R+ GL Sbjct: 10 LGPGDRSDEIRKIKAFMRRKFSYAATLADTEFYDEAMTAVVAEMQSRYNTAGHLRDGLYI 69 Query: 154 SGMVDSST 161 G++++ T Sbjct: 70 PGIINAET 77 >gi|118589003|ref|ZP_01546410.1| hypothetical protein SIAM614_13163 [Stappia aggregata IAM 12614] gi|118438332|gb|EAV44966.1| hypothetical protein SIAM614_13163 [Stappia aggregata IAM 12614] Length = 241 Score = 37.3 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ RL G + A++ FQ GL + D +T+ A+ Sbjct: 10 LQSRLTAHGF--ACGEIDGRIGPKTLHALRSFQKAMGLAVTSEADEATVLALRQS 62 >gi|6678900|ref|NP_032635.1| matrix metalloproteinase-15 precursor [Mus musculus] gi|12585269|sp|O54732|MMP15_MOUSE RecName: Full=Matrix metalloproteinase-15; Short=MMP-15; AltName: Full=Membrane-type matrix metalloproteinase 2; Short=MT-MMP 2; Short=MTMMP2; AltName: Full=Membrane-type-2 matrix metalloproteinase; Short=MT2-MMP; Short=MT2MMP; Flags: Precursor gi|2662366|dbj|BAA23667.1| membrane type-2 matrix metalloproteinase [Mus musculus] gi|34784408|gb|AAH57952.1| Matrix metallopeptidase 15 [Mus musculus] gi|55777344|gb|AAH47278.1| Matrix metallopeptidase 15 [Mus musculus] Length = 657 Score = 37.3 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + SA+ Q +G+ +G++D T M P D Sbjct: 53 LRLYGYLPQPSRHMSTMRSAQILASALAEMQSFYGIPVTGVLDEETKTWMKRPRCGVPDQ 112 Query: 172 RIRQLQVNLMRIK 184 ++ NL R + Sbjct: 113 FGVHVKANLRRRR 125 >gi|115495469|ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus] gi|123236166|emb|CAM22837.1| matrix metallopeptidase 24 [Mus musculus] gi|162317834|gb|AAI56392.1| Matrix metallopeptidase 24 [synthetic construct] Length = 618 Score = 37.3 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 58 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 110 >gi|13929064|ref|NP_113945.1| matrix metalloproteinase-24 [Rattus norvegicus] gi|20138812|sp|Q99PW6|MMP24_RAT RecName: Full=Matrix metalloproteinase-24; Short=MMP-24; AltName: Full=Membrane-type matrix metalloproteinase 5; Short=MT-MMP 5; Short=MTMMP5; AltName: Full=Membrane-type-5 matrix metalloproteinase; Short=MT5-MMP; Short=MT5MMP; Contains: RecName: Full=Processed matrix metalloproteinase-24; Flags: Precursor gi|12862768|dbj|BAB32589.1| membrane-type matrix metalloproteinase 5 [Rattus norvegicus] Length = 618 Score = 37.3 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 58 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 110 >gi|83855364|ref|ZP_00948894.1| peptidoglycan binding domain protein [Sulfitobacter sp. NAS-14.1] gi|83843207|gb|EAP82374.1| peptidoglycan binding domain protein [Sulfitobacter sp. NAS-14.1] Length = 426 Score = 37.3 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 7/78 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP + R L + L+ +L G + + +AV+ FQ+ GL P Sbjct: 356 WP-VQDRAL----TYDERIELQTQLTAQGF--DTVQIDAKIGPLTINAVREFQLSQGLVP 408 Query: 154 SGMVDSSTLEAMNVPVDL 171 G LE + Sbjct: 409 DGYASPRLLETLRAAAAE 426 >gi|318065823|ref|YP_004123854.1| gp32 [Mycobacterium phage Wee] gi|12060969|gb|AAG48319.1|AF319619_3 gp3 [Mycobacterium phage Ms6] gi|315420906|gb|ADU15907.1| gp32 [Mycobacterium phage Wee] Length = 332 Score = 37.3 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--------GLDP 153 L G+ S +++++ + + + +D + + V Q R+ GL Sbjct: 10 LGPGDRSDEIRKIKAFMRRKFSYAATLADTEFYDEAMTAVVAEMQSRYNTAGQLRDGLYI 69 Query: 154 SGMVDSST 161 G++++ T Sbjct: 70 PGIINAET 77 >gi|332240134|ref|XP_003269245.1| PREDICTED: matrix metalloproteinase-25 [Nomascus leucogenys] Length = 567 Score = 37.3 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A+K+ Q GL +G +D T+ M P Sbjct: 41 LTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKP 93 >gi|11968059|ref|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo sapiens] gi|12585274|sp|Q9NPA2|MMP25_HUMAN RecName: Full=Matrix metalloproteinase-25; Short=MMP-25; AltName: Full=Leukolysin; AltName: Full=Membrane-type matrix metalloproteinase 6; Short=MT-MMP 6; Short=MTMMP6; AltName: Full=Membrane-type-6 matrix metalloproteinase; Short=MT6-MMP; Short=MT6MMP; Flags: Precursor gi|8052552|gb|AAF66697.2|AF145442_1 leukolysin [Homo sapiens] gi|10441358|gb|AAG17007.1|AF185270_1 leukolysin [Homo sapiens] gi|8546817|emb|CAB94713.1| matrix metalloproteinase-25 [Homo sapiens] gi|9798454|emb|CAC03490.1| membrane type matrix metalloproteinase number 6 [Homo sapiens] gi|119605819|gb|EAW85413.1| hCG15613, isoform CRA_a [Homo sapiens] gi|119605821|gb|EAW85415.1| hCG15613, isoform CRA_a [Homo sapiens] gi|189442380|gb|AAI67800.1| Matrix metallopeptidase 25 [synthetic construct] Length = 562 Score = 37.3 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A+K+ Q GL +G +D T+ M P Sbjct: 36 LTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKP 88 >gi|326936325|ref|XP_003214206.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-9-like [Meleagris gallopavo] Length = 689 Score = 37.3 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G + ++ + + A++ Q + GL+ +G +D+STLEAM P Sbjct: 49 LLRFGYIQEAEARRSSKHVSLAKALRKMQKQLGLEETGELDASTLEAMRXP 99 >gi|281414246|ref|ZP_06245988.1| DNA segregation ATPase, FtsK/SpoIIIE family protein [Micrococcus luteus NCTC 2665] Length = 774 Score = 37.3 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 5/74 (6%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-- 99 D S P+++ + E +A +++ + GG + Sbjct: 614 AMRSGRPVAVLDG-TGEAATAARSGTPVLTPDAEGAGEAVLARLRELAAAGGTAVITGWN 672 Query: 100 --RPLHLGNSSVSV 111 L +G++ +V Sbjct: 673 AWSGLRVGDTYRTV 686 >gi|47212180|emb|CAF95128.1| unnamed protein product [Tetraodon nigroviridis] Length = 351 Score = 37.3 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P ++ + A++ Q GL +G+ D TL M P Sbjct: 3 LSRFGYLPPPDPVTGQLQTQEALTQAIRAMQRFGGLKETGIFDQDTLLLMGTP 55 >gi|296219419|ref|XP_002755837.1| PREDICTED: matrix metalloproteinase-25 [Callithrix jacchus] Length = 685 Score = 37.3 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A+K+ Q GL +G++D T+ M P Sbjct: 43 LTRYGYLPPPDPAQAQLQSPEKLSDAIKVMQRFAGLPETGLMDPRTVATMRKP 95 >gi|12643347|sp|Q9R0S2|MMP24_MOUSE RecName: Full=Matrix metalloproteinase-24; Short=MMP-24; AltName: Full=Matrix metalloproteinase-21; Short=MMP-21; AltName: Full=Membrane-type matrix metalloproteinase 5; Short=MT-MMP 5; Short=MTMMP5; AltName: Full=Membrane-type-5 matrix metalloproteinase; Short=MT5-MMP; Short=MT5MMP; Contains: RecName: Full=Processed matrix metalloproteinase-24; Flags: Precursor gi|5689227|dbj|BAA82966.1| membrane-type-5 matrix metalloproteinase [Mus musculus] Length = 618 Score = 37.3 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A ++SAV Q +G+ +G++D +T+E M P Sbjct: 58 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 110 >gi|85713853|ref|ZP_01044842.1| hypothetical protein NB311A_06853 [Nitrobacter sp. Nb-311A] gi|85698979|gb|EAQ36847.1| hypothetical protein NB311A_06853 [Nitrobacter sp. Nb-311A] Length = 506 Score = 37.3 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 8/42 (19%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 N +H P P + GCVR+ L T Sbjct: 115 NGLALHGGPLPG------HAASHGCVRM--PYGFAEKLFDKT 148 >gi|260818326|ref|XP_002604334.1| hypothetical protein BRAFLDRAFT_88624 [Branchiostoma floridae] gi|229289660|gb|EEN60345.1| hypothetical protein BRAFLDRAFT_88624 [Branchiostoma floridae] Length = 423 Score = 37.3 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 14/100 (14%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP---VDLRIRQLQVN---------LMRIKK 185 V AV+ Q +GL +G+++ +TL A+ P V + + ++ R++ Sbjct: 2 VAEAVRSVQKSYGLLATGILNPATLAAIRKPRCGVPDVLARYALSGTKWAKNDLTYRLES 61 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 L A + + V GR D Sbjct: 62 LTSHLTETEAREAIRDAF--RVWSDYTPLTFTAVPSGRAD 99 >gi|192823824|ref|YP_001994742.1| gp11 [Mycobacterium phage DD5] gi|190610602|gb|ACE80120.1| gp11 [Mycobacterium phage DD5] Length = 322 Score = 37.3 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 101 PLHLGNSSVSVQRLRERLII--SGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 PL LG+ + +V+R RE + SG P + F E+ ++ R G Sbjct: 2 PLKLGDRNPTVRRWREVMAARFSGYARVHGPLPTDTDEFGPRAEAWQTEYESRTFQPLDG 61 Query: 156 MVDSSTLEAMNVPV--DLRIRQLQVNLMRIKKL------LEQKMGLRYVLVNI-PAASLE 206 +V L A+ +P D R L V+ + + +++G Y+ + P + + Sbjct: 62 IVSDDDLRALGIPAPEDTRPVLLTVSGTGVPWWIGPDADVARRLGDVYLWRPVGPPYTAQ 121 Query: 207 AVENG 211 A G Sbjct: 122 AFPMG 126 >gi|291389397|ref|XP_002711214.1| PREDICTED: matrix metalloproteinase 19 [Oryctolagus cuniculus] Length = 525 Score = 37.3 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L F + A++ FQ L SG +D + M P Sbjct: 32 LLQYGYLQKPLEGPQVFRPEDIAEALRAFQEASELPVSGQLDDAVRARMRQP 83 >gi|221638152|ref|YP_002524414.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides KD131] gi|221158933|gb|ACL99912.1| ErfK/YbiS/YcfS/YnhG family protein precursor [Rhodobacter sphaeroides KD131] Length = 254 Score = 37.3 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 295 NFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 + G N + + + Y +H T + + ++GC+R+ ++ Sbjct: 138 PYAAGLPGGLQNPLGARALYLYRGGRDTMFRIHGTVQNASIGH---ATSAGCIRLFNQDA 194 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRK 376 IDL + TP R E + + Sbjct: 195 IDLYGRVNLGTPVKVRTEAESLALEGQ 221 >gi|194212236|ref|XP_001491808.2| PREDICTED: similar to Matrix metalloproteinase-19 precursor (MMP-19) (Matrix metalloproteinase RASI) (MMP-18) [Equus caballus] Length = 547 Score = 37.3 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L F + A++ FQ L SG +D +T M P Sbjct: 33 LLKYGYLQKPLEGPDDFSPEDIMEALRAFQEASELPVSGQLDDATRVRMRQP 84 >gi|75908669|ref|YP_322965.1| ErfK/YbiS/YcfS/YnhG protein [Anabaena variabilis ATCC 29413] gi|75702394|gb|ABA22070.1| peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family [Anabaena variabilis ATCC 29413] Length = 171 Score = 37.3 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 29/130 (22%), Gaps = 18/130 (13%) Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE----KGKEVFVEEVDWNSP 291 ++ PR I D + ++ GK V Sbjct: 45 TAVVEQNSITQPRRIEID------LSDQRLFAWEGKKLVYSFRISTGKRSTPTPVGQFKI 98 Query: 292 EPPNFIFRQD-PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 R PG + F+ H F + GCV + + Sbjct: 99 NSKYRTNRMRGPGYDIPNVPYAMYFHQGYAI--HGAYWHNRFGTP---VSHGCVNL--PV 151 Query: 351 DLDVWLLKDT 360 L L T Sbjct: 152 KLARKLYNWT 161 >gi|158286645|ref|XP_001688107.1| AGAP006904-PA [Anopheles gambiae str. PEST] gi|158286647|ref|XP_001688108.1| AGAP006904-PB [Anopheles gambiae str. PEST] gi|158286649|ref|XP_308849.3| AGAP006904-PC [Anopheles gambiae str. PEST] gi|157020567|gb|EDO64756.1| AGAP006904-PA [Anopheles gambiae str. PEST] gi|157020568|gb|EDO64757.1| AGAP006904-PB [Anopheles gambiae str. PEST] gi|157020569|gb|EAA04040.3| AGAP006904-PC [Anopheles gambiae str. PEST] Length = 570 Score = 37.3 bits (85), Expect = 5.3, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 118 LIISGDLDP---SKGLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + D E A+ FQ GL+ +G +D T++ M++P Sbjct: 38 LSQFGYLSPKYRNPTSGNLLDQDTWEKAIMEFQSFAGLNVTGELDGETMQLMSLP 92 >gi|254515069|ref|ZP_05127130.1| lytic murein transglycosylase [gamma proteobacterium NOR5-3] gi|219677312|gb|EED33677.1| lytic murein transglycosylase [gamma proteobacterium NOR5-3] Length = 402 Score = 37.3 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 V + L G + + +A++ FQ+ L G D TLE +N Sbjct: 343 DVASAQRALNALGH--DVGTVDGVLGSRTHAALRAFQLEQRLPADGYPDPLTLETLNAAA 400 >gi|51892719|ref|YP_075410.1| hypothetical protein STH1581 [Symbiobacterium thermophilum IAM 14863] gi|51856408|dbj|BAD40566.1| conserved domain protein [Symbiobacterium thermophilum IAM 14863] Length = 354 Score = 37.3 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 45/195 (23%), Gaps = 73/195 (37%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR--------VDR-----QTPILHS 233 ++V+ L E+G++ + V GR D TP Sbjct: 203 PVAPPEPTVIVVDKGLNVLWYYEDGELVQTARVSTGRHVAGPAPSPDNWTENLLTPTGRF 262 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + ++ + I +D Sbjct: 263 TVTLMVPGMPYY----------------------KEGIDALD------------------ 282 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTY-----MHDTPEPILFNNVVRFETSGCVRVRN 348 N + + I F +H T P R+ + G + + N Sbjct: 283 ----------PANPLGTRWIGFTVFEGDGGSLWAIHGTNAPEALG---RWNSEGSIVMSN 329 Query: 349 --IIDLDVWLLKDTP 361 + L + TP Sbjct: 330 GEVEQLYERVELGTP 344 >gi|239917277|ref|YP_002956835.1| DNA segregation ATPase, FtsK/SpoIIIE family [Micrococcus luteus NCTC 2665] gi|239838484|gb|ACS30281.1| DNA segregation ATPase, FtsK/SpoIIIE family [Micrococcus luteus NCTC 2665] Length = 999 Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 5/74 (6%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-- 99 D S P+++ + E +A +++ + GG + Sbjct: 839 AMRSGRPVAVLDG-TGEAATAARSGTPVLTPDAEGAGEAVLARLRELAAAGGTAVITGWN 897 Query: 100 --RPLHLGNSSVSV 111 L +G++ +V Sbjct: 898 AWSGLRVGDTYRTV 911 >gi|75676549|ref|YP_318970.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] gi|74421419|gb|ABA05618.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] Length = 270 Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 20/94 (21%) Query: 316 YSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP----- 361 ++ + +H T + GCVR+ N L + ++ Sbjct: 81 PMPHSIFFTKAGHAIHGTLSEGSLGVP---VSHGCVRISRANASTLFSLVKQEGVLNTTV 137 Query: 362 ---TWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 SR + + ++ T V P + Y Sbjct: 138 TLTGSSRVALARNPRGKRKTDVAGRDPGPAYQSY 171 >gi|77462298|ref|YP_351802.1| hypothetical protein RSP_1754 [Rhodobacter sphaeroides 2.4.1] gi|77386716|gb|ABA77901.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 269 Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 295 NFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 + G N + + + Y +H T + + ++GC+R+ ++ Sbjct: 153 PYAAGLPGGLQNPLGARALYLYRGGRDTMFRIHGTVQNASIGH---ATSAGCIRLFNQDA 209 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRK 376 IDL + TP R E + + Sbjct: 210 IDLYGRVNLGTPVKVRTEAESLALEGQ 236 >gi|126461174|ref|YP_001042288.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] gi|126102838|gb|ABN75516.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17029] Length = 269 Score = 36.9 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 295 NFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 + G N + + + Y +H T + + ++GC+R+ ++ Sbjct: 153 PYAAGLPGGLQNPLGARALYLYRGGRDTMFRIHGTVQNASIGH---ATSAGCIRLFNQDA 209 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRK 376 IDL + TP R E + + Sbjct: 210 IDLYGRVNLGTPVKVRTEAESLALEGQ 236 >gi|192823912|ref|YP_001994558.1| gp11 [Mycobacterium phage Jasper] gi|190610507|gb|ACE80026.1| gp11 [Mycobacterium phage Jasper] Length = 322 Score = 36.9 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 101 PLHLGNSSVSVQRLRERLII--SGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 PL LG+ + +V+R RE + +G P + F E+ ++ R G Sbjct: 2 PLKLGDRNPTVRRWREVMAARFAGYARIHGPLPTDTDEFGPRAEAWQTEYESRTFQPLDG 61 Query: 156 MVDSSTLEAMNVPV--DLRIRQLQVNLMRIKKL------LEQKMGLRYVLVNI-PAASLE 206 +V L A+ +P D R L V+ + + +++G Y+ + P + + Sbjct: 62 IVSDDDLRALGIPAPEDARPVLLTVSGTGVPWWVGPDADVARRLGDVYLWRPVGPPYTAQ 121 Query: 207 AVENG 211 A G Sbjct: 122 AFPMG 126 >gi|86749139|ref|YP_485635.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] gi|86572167|gb|ABD06724.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris HaA2] Length = 253 Score = 36.9 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 12/53 (22%) Query: 316 YSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKD 359 + + +H T + GCVR+ N L + KD Sbjct: 81 PMPHAIFFTKRGHAIHGTDAAGKLGVP---VSHGCVRLSRENASKLYALVEKD 130 >gi|328543593|ref|YP_004303702.1| Caspase domain protein [polymorphum gilvum SL003B-26A1] gi|326413337|gb|ADZ70400.1| Caspase domain protein [Polymorphum gilvum SL003B-26A1] Length = 511 Score = 36.9 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ RL ++G AF S ++ +Q +GL +G Sbjct: 379 VEVQARLNLAGY--NVGRPDGAFGQNTRSGIRAWQTANGLPATG 420 >gi|119512845|ref|ZP_01631912.1| Phosphoesterase, RecJ-like [Nodularia spumigena CCY9414] gi|119462518|gb|EAW43488.1| Phosphoesterase, RecJ-like [Nodularia spumigena CCY9414] Length = 414 Score = 36.9 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 8/94 (8%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 ++ +G+ + + ++ + P +S + Sbjct: 141 TVMALGIHVDTGSLTFDS-----ATPRDALALAWLMAQGVSSSVISTYLDPGLSPQLQQL 195 Query: 78 TEKAIAFYQDILSRG---GWPELPIRPLHLGNSS 108 +A+ + RG GW L G SS Sbjct: 196 LTEALENLEYFSLRGYTIGWVTLRTEEFVPGLSS 229 >gi|157786485|ref|YP_001491661.1| gp9 [Mycobacterium phage Bethlehem] gi|40769424|gb|AAR89730.1| gp9 [Mycobacterium phage Bethlehem] Length = 322 Score = 36.9 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 101 PLHLGNSSVSVQRLRERLII--SGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 PL LG+ + +V+R RE + +G P + F E+ ++ R G Sbjct: 2 PLKLGDRNPTVRRWREVMAARFAGYARIHGPLPTDTDEFGPRAEAWQTEYESRTFQPLDG 61 Query: 156 MVDSSTLEAMNVPV--DLRIRQLQVNLMRIKKL------LEQKMGLRYVLVNI-PAASLE 206 +V L A+ +P D R L V+ + + +++G Y+ + P + + Sbjct: 62 IVSDDDLRALGIPAPEDKRPVLLTVSGTGVPWWIGPDADVARRLGDVYLWRPVGPPYTAQ 121 Query: 207 AVENG 211 A G Sbjct: 122 AFPMG 126 >gi|239623512|ref|ZP_04666543.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521543|gb|EEQ61409.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 549 Score = 36.9 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 14/57 (24%), Gaps = 4/57 (7%) Query: 309 ASTKIEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + K HD F + GCV + +L + P Sbjct: 363 SPVKFWMPFNGGIGFHDASWRSSFGGSIYKTGGSHGCVNMPYAAAKELFENVYAGMP 419 >gi|52549472|gb|AAU83321.1| hypothetical protein GZ27E6_43 [uncultured archaeon GZfos27E6] Length = 585 Score = 36.9 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SV +R + G + S F + + ++Q++ GL+ G + TL+ + Sbjct: 267 QGYSVDFVRRIESLFGFSHSKESESGKFSKDLVRVLAIYQLKEGLEADGELGDETLKKLR 326 >gi|256078917|ref|XP_002575739.1| matrix metallopeptidase-7 (M10 family) [Schistosoma mansoni] gi|238660985|emb|CAZ31973.1| matrix metallopeptidase-7 (M10 family) [Schistosoma mansoni] Length = 454 Score = 36.9 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 39/106 (36%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A++ FQ+++ L +G +D +T + P Q + L + + G Sbjct: 80 AIRKFQIQYNLPITGKLDKATKNLLISPRCGNPDQPIKSKQSSTLLSKLRFGNTTHFNQN 139 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +++ N ++ + + ++ I ++ W I Sbjct: 140 YSFTVQNANNNHNNNQNERRLLKRQKRYLIGDEKMKWTKKQLTWQI 185 >gi|301629918|ref|XP_002944079.1| PREDICTED: matrix metalloproteinase-21-like, partial [Xenopus (Silurana) tropicalis] Length = 568 Score = 36.9 bits (84), Expect = 6.4, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 25/46 (54%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 D L + + A++ FQ + L+ +G +D++T+ AMNVP Sbjct: 47 DSVSPTDLELTLNPRFNGALRRFQEANKLEVTGRLDAATIMAMNVP 92 >gi|126272561|ref|XP_001367626.1| PREDICTED: similar to putative matrix metalloproteinase [Monodelphis domestica] Length = 574 Score = 36.9 bits (84), Expect = 6.4, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 19/34 (55%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + + A+ FQ + L +G +D +TL AMN P Sbjct: 90 NPGLREAIAKFQSFNRLPVTGQLDKATLAAMNQP 123 >gi|52550439|gb|AAU84288.1| hypothetical protein GZ9D1_1 [uncultured archaeon GZfos9D1] Length = 344 Score = 36.9 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 SV +R + G + S F + + ++Q++ GL+ G + TL+ + Sbjct: 267 QGYSVDFVRRIESLFGFSHSKESESGKFSKDLVRVLAIYQLKEGLEADGELGDETLKKLR 326 >gi|221108941|ref|XP_002154985.1| PREDICTED: similar to matrix metalloproteinase 14 [Hydra magnipapillata] Length = 298 Score = 36.9 bits (84), Expect = 6.6, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L + A+K Q L +G++D TL M+ P Sbjct: 25 LKRYGYLQTGYSNPN----SLTEAIKKMQKFANLPETGVLDKPTLNLMSTP 71 >gi|115522727|ref|YP_779638.1| lytic murein transglycosylase [Rhodopseudomonas palustris BisA53] gi|115516674|gb|ABJ04658.1| lytic murein transglycosylase [Rhodopseudomonas palustris BisA53] Length = 467 Score = 36.9 bits (84), Expect = 6.6, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 2/54 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L++ L G F A++ FQ G G LE + Sbjct: 414 ELQQLLAQRGFY--RGTPDGQFGGQTREALRSFQASIGTPADGFATGDVLERLR 465 >gi|157820645|ref|NP_001100629.1| matrix metalloproteinase-19 [Rattus norvegicus] gi|149029634|gb|EDL84805.1| matrix metalloproteinase 19 (predicted) [Rattus norvegicus] gi|225422918|gb|ACN90949.1| matrix metalloproteinase 19 [Rattus norvegicus] Length = 517 Score = 36.9 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPS 154 + R L V + L+ G L + F + A++ FQ L S Sbjct: 15 TVSGRALGPAEKEAVV----DYLLQYGYLQKPLEGADDFRLEDITEALRTFQEASELPVS 70 Query: 155 GMVDSSTLEAMNVP 168 G +D +T M P Sbjct: 71 GQMDDATRARMKQP 84 >gi|146341831|ref|YP_001206879.1| hypothetical protein BRADO4960 [Bradyrhizobium sp. ORS278] gi|146194637|emb|CAL78662.1| conserved hypothetical protein; putative signal peptide; putative Peptidoglycan binding-like domain [Bradyrhizobium sp. ORS278] Length = 159 Score = 36.9 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ L G FD +A+ +Q G +G ++++ +A+ Sbjct: 61 AVQRGLTRLGF---DTKADGTFDEQTRAAISRWQEERGYPTTGFLNAAQHKALIT 112 >gi|220921182|ref|YP_002496483.1| lytic murein transglycosylase [Methylobacterium nodulans ORS 2060] gi|219945788|gb|ACL56180.1| lytic murein transglycosylase [Methylobacterium nodulans ORS 2060] Length = 392 Score = 36.9 bits (84), Expect = 6.9, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++ L++ L L + AV+ +Q+ GL G + LE + Sbjct: 333 AGLRALQQGLAARSLYA--GPLDGRAGPKLREAVRRYQIAAGLPADGYATPALLEHLR 388 >gi|83375894|gb|ABC17785.1| matrix metalloproteinase 24 variant [Homo sapiens] Length = 593 Score = 36.9 bits (84), Expect = 6.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 33 LKSYGYLLPYDSRASALHSAKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 85 >gi|5729929|ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens] gi|332858203|ref|XP_003316927.1| PREDICTED: matrix metalloproteinase-24 [Pan troglodytes] gi|12585280|sp|Q9Y5R2|MMP24_HUMAN RecName: Full=Matrix metalloproteinase-24; Short=MMP-24; AltName: Full=Membrane-type matrix metalloproteinase 5; Short=MT-MMP 5; Short=MTMMP5; AltName: Full=Membrane-type-5 matrix metalloproteinase; Short=MT5-MMP; Short=MT5MMP; Contains: RecName: Full=Processed matrix metalloproteinase-24; Flags: Precursor gi|5381386|gb|AAD42962.1|AF131284_1 membrane type 5 matrix metalloproteinase [Homo sapiens] gi|5689367|dbj|BAA82967.1| membrane-type-5 matrix metalloproteinase [Homo sapiens] gi|220675561|emb|CAX12722.1| matrix metallopeptidase 24 (membrane-inserted) [Homo sapiens] gi|225000844|gb|AAI72450.1| Matrix metallopeptidase 24 (membrane-inserted) [synthetic construct] Length = 645 Score = 36.9 bits (84), Expect = 6.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 85 LKSYGYLLPYDSRASALHSAKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 137 >gi|313646694|gb|EFS11153.1| putative transposase [Shigella flexneri 2a str. 2457T] Length = 203 Score = 36.9 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 15/121 (12%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLR--ERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + W P +H + L +RL +G L + ++D + ++ Sbjct: 86 EQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESI----- 140 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 +GL + ++ + + R L + +++ R + A Sbjct: 141 -NGLYKAEVIHRKSWK-------NRAEVELATLTWVDWYNNRRLPERLGHIPPAEAEKAY 192 Query: 208 V 208 Sbjct: 193 Y 193 >gi|254501774|ref|ZP_05113925.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222437845|gb|EEE44524.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 132 Score = 36.9 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 SS V ++ L G + A+ +Q +GL +G + L+ M Sbjct: 72 ASSPLVSGIQGALAAKGY--DPGAVDGRMGPGTAQAISAYQQANGLLVTGQPSQALLDHM 129 Query: 166 N 166 Sbjct: 130 R 130 >gi|196231441|ref|ZP_03130299.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] gi|196224294|gb|EDY18806.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] Length = 285 Score = 36.9 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ + L G + A A++ +Q+R+GL+ +G ++ TL A+ + Sbjct: 21 DDQVRNAQTELKSLGFYYGEA--NGQSSAEWAFAIRRYQIRNGLEVTGALNHETLAALGM 78 >gi|281341936|gb|EFB17520.1| hypothetical protein PANDA_012844 [Ailuropoda melanoleuca] Length = 493 Score = 36.9 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L+ + A +A++ FQ L SG++D +TL M P Sbjct: 4 LEKYGYLNEQVPKDLT-AARFSNAIREFQWVSQLPISGVLDPATLRQMTRP 53 >gi|156405599|ref|XP_001640819.1| predicted protein [Nematostella vectensis] gi|156227955|gb|EDO48756.1| predicted protein [Nematostella vectensis] Length = 222 Score = 36.9 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + V+ A++ FQ GL +G +D T+ M P Sbjct: 14 NHDVKKALEKFQEIAGLPVTGEMDPDTIAQMKKP 47 >gi|302560479|ref|ZP_07312821.1| membrane protein [Streptomyces griseoflavus Tu4000] gi|302478097|gb|EFL41190.1| membrane protein [Streptomyces griseoflavus Tu4000] Length = 446 Score = 36.9 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 5/76 (6%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P R L G + V RL E+L+ G D D A + Q G Sbjct: 371 PGRALFRPGAVNDQVTRLGEQLVRKGFGRYYADGPGPRWSEADRRNVEAFQRAQGWRGGA 430 Query: 153 PSGMVDSSTLEAMNVP 168 G T + + Sbjct: 431 ADGYPGPETWRRLFLS 446 >gi|203463369|ref|YP_002223951.1| gp10 [Mycobacterium phage Solon] gi|197312556|gb|ACH62910.1| gp10 [Mycobacterium phage Solon] Length = 322 Score = 36.9 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 101 PLHLGNSSVSVQRLRERLII--SGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 PL LG+ + +V+R RE + +G P + F E+ ++ R G Sbjct: 2 PLKLGDRNPTVRRWREVMAARFAGYARVHGPLPTDTDEFGPRAEAWQTEYESRTFQPLDG 61 Query: 156 MVDSSTLEAMNVPV--DLRIRQLQVNLMRIKKL------LEQKMGLRYVLVNI-PAASLE 206 +V L A+ +P D R L V+ + + +++G Y+ + P + + Sbjct: 62 IVSDDDLRALGIPAPEDTRPVLLTVSGTGVPWWIGPDADVARRLGDVYLWRPVGPPYTAQ 121 Query: 207 AVENG 211 A G Sbjct: 122 AFPMG 126 >gi|121594329|ref|YP_986225.1| hypothetical protein Ajs_1969 [Acidovorax sp. JS42] gi|120606409|gb|ABM42149.1| hypothetical protein Ajs_1969 [Acidovorax sp. JS42] Length = 581 Score = 36.9 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 20/135 (14%) Query: 80 KAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQ-----------------RLRERLIIS 121 + + I G W +P + L L + Q ++ LI Sbjct: 259 RTLIDLATIELVGKWARVPYWQCLTLEQTHPDFQRQMRDWFDESGGVGQATLVQNSLIAQ 318 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 G L L + +A+ FQ+ L P+G++D ST E +L Sbjct: 319 GYLQAGTDLLALDSPALRTALTQFQIDSLLVPTGVLDFSTYERAMRHFVTLAP--DGSLQ 376 Query: 182 RIKKLLEQKMGLRYV 196 R+ G Sbjct: 377 RVGWGPSGPTGSMAE 391 >gi|222110962|ref|YP_002553226.1| hypothetical protein Dtpsy_1769 [Acidovorax ebreus TPSY] gi|221730406|gb|ACM33226.1| conserved hypothetical protein [Acidovorax ebreus TPSY] Length = 581 Score = 36.9 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 20/135 (14%) Query: 80 KAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQ-----------------RLRERLIIS 121 + + I G W +P + L L + Q ++ LI Sbjct: 259 RTLIDLATIELVGKWARVPYWQCLTLEQTHPDFQRQMRDWFDESGGVGQATLVQNSLIAQ 318 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 G L L + +A+ FQ+ L P+G++D ST E +L Sbjct: 319 GYLQAGTDLLALDSPALRTALTQFQIDSLLVPTGVLDFSTYERAMRHFVTLAP--DGSLQ 376 Query: 182 RIKKLLEQKMGLRYV 196 R+ G Sbjct: 377 RVGWGPSGPTGSMAE 391 >gi|120586977|ref|NP_001073357.1| matrix metalloproteinase-28 [Rattus norvegicus] gi|119351063|gb|ABL63427.1| matrix metalloproteinase 28 [Rattus norvegicus] Length = 525 Score = 36.9 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%) Query: 118 LIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F A++ FQ L SG++D +TL M P Sbjct: 40 LEKYGYLSEQGSKVPASTQF----SDAIREFQWVSQLPISGVLDRATLRQMTRP 89 >gi|146278531|ref|YP_001168690.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] gi|145556772|gb|ABP71385.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodobacter sphaeroides ATCC 17025] Length = 267 Score = 36.9 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Query: 295 NFIFRQDPGKINAMASTKIEFYSRNN---TYMHDTPEPILFNNVVRFETSGCVRV--RNI 349 + G N + + + Y +H T + + ++GC+R+ ++ Sbjct: 151 PYAAGLPGGLENPLGARALYLYRGGRDTMFRIHGTVQNASIGH---ATSAGCIRLFNQDA 207 Query: 350 IDLDVWLLKDTPTWSRYHIEEV 371 IDL TP R E + Sbjct: 208 IDLYNRTRIGTPVKVRTQAESL 229 >gi|29126959|gb|AAH47614.1| MMP24 protein [Homo sapiens] Length = 626 Score = 36.5 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 66 LKSYGYLLPYDSRASALHSAKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 118 >gi|301760460|ref|XP_002916079.1| PREDICTED: matrix metalloproteinase-19-like [Ailuropoda melanoleuca] Length = 547 Score = 36.5 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L F + A++ FQ L SG +D +T M P Sbjct: 33 LLQYGYLQKPLEGPDDFRAEDIMEALRTFQEASELPVSGQLDDATRARMRQP 84 >gi|149053668|gb|EDM05485.1| matrix metallopeptidase 28 (epilysin) (predicted) [Rattus norvegicus] Length = 475 Score = 36.5 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%) Query: 118 LIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F A++ FQ L SG++D +TL M P Sbjct: 40 LEKYGYLSEQGSKVPASTQF----SDAIREFQWVSQLPISGVLDRATLRQMTRP 89 >gi|47209949|emb|CAF89957.1| unnamed protein product [Tetraodon nigroviridis] Length = 578 Score = 36.5 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 118 LIISGDLDPSKGLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + V +SAV Q +G+ +G +D +T+ M P Sbjct: 4 LKNYGYLPPHAVPAPL--ETVRQSAVASMQRFYGIPVTGRLDPTTVAWMRKP 53 >gi|300786602|ref|YP_003766893.1| transglycosylase [Amycolatopsis mediterranei U32] gi|299796116|gb|ADJ46491.1| transglycosylase domain-containing protein [Amycolatopsis mediterranei U32] Length = 221 Score = 36.5 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + ++ + R+ G + + +AV Q +G++ SG++ Sbjct: 153 VYRYGDCADPLKTFQLRMNAFGY---GFTGTGCYLEKTRTAVLDLQRANGINDSGLLGPK 209 Query: 161 TLEAMNVPVDLR 172 T EA R Sbjct: 210 TWEAAWTGKPPR 221 >gi|197337354|ref|YP_002158252.1| LysM domain protein [Vibrio fischeri MJ11] gi|197314606|gb|ACH64055.1| LysM domain protein [Vibrio fischeri MJ11] Length = 798 Score = 36.5 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 19/150 (12%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + +++ + + G L + V+ ++ L+ S F Sbjct: 455 STLLQSVESLELLAKGNG------VLLKENHKGPEVKSIQNALMKLDFELGISEASENFG 508 Query: 136 AYVESAVKLFQMRHG-----------LDPSGMVDSSTLEAMNVPVDLRIRQLQVNL--MR 182 + + + LFQ + G+V +T+ A++ + ++ L R Sbjct: 509 SMTKQTLTLFQKLYEPSHKTHADYSIGSADGIVGKNTILALDEALQDGWSCIRYELRISR 568 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 K ++ ++ A + G Sbjct: 569 KKLYRRHNSVNDFIGNKNTDLTVRAKQGGT 598 >gi|192824007|ref|YP_001994469.1| gp11 [Mycobacterium phage KBG] gi|190610237|gb|ACE79759.1| gp11 [Mycobacterium phage KBG] Length = 322 Score = 36.5 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 101 PLHLGNSSVSVQRLRERLII--SGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 PL LG+ + +V+R RE + +G P + F E+ ++ R G Sbjct: 2 PLKLGDRNPTVRRWREVMAARFAGYARIHGPLPTDTDEFGPRAEAWQTEYESRTFQPLDG 61 Query: 156 MVDSSTLEAMNVPV--DLRIRQLQVNLMRIKKL------LEQKMGLRYVLVNI-PAASLE 206 +V L A+ +P D R L V+ + + +++G Y+ + P + + Sbjct: 62 IVSDDDLRALGIPAPEDTRPVLLTVSGTGVPWWIGPDADVARRLGDVYLWRPVGPPYTAQ 121 Query: 207 AVENG 211 A G Sbjct: 122 AFPMG 126 >gi|260820674|ref|XP_002605659.1| hypothetical protein BRAFLDRAFT_279941 [Branchiostoma floridae] gi|229290994|gb|EEN61669.1| hypothetical protein BRAFLDRAFT_279941 [Branchiostoma floridae] Length = 606 Score = 36.5 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 23/129 (17%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L+ G L + + A+ Q GL+ +G +D TL+ M P + Sbjct: 51 LMKFGYLKQDGKMRT--GEDLREAIITMQRFGGLEETGKLDEGTLKLMQSPRCGVADIIG 108 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 E RY LV + K L ++ R TP L + Sbjct: 109 TA--------ETTRKKRYALVG------YYWQ--KKNLTYRIV-----RTTPQLSPYVVH 147 Query: 238 IMFNPYWVI 246 + + Sbjct: 148 DAIRRAFNV 156 >gi|39936101|ref|NP_948377.1| hypothetical protein RPA3038 [Rhodopseudomonas palustris CGA009] gi|39649955|emb|CAE28479.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris CGA009] Length = 537 Score = 36.5 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 54/218 (24%), Gaps = 70/218 (32%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 R++ +I+K + G + V+I L + + + V G T Sbjct: 78 PRKRLQLDHKAEKQIEKQATKPQGPVVIAVSIEQQKLRVYDANGLFAETPVSTGMRGHST 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+ + + I M +++ + W Sbjct: 138 PMGVFSVIQKSKYHRSN----IYSGAPMPYMQR------------------------ITW 169 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H P + GC+R+ Sbjct: 170 S------------------------------GIALHAGALPGY------PASHGCIRMPM 193 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 + +W W+R +V TPV + + Sbjct: 194 TFAVKMW------GWTRMGARVIVAPGDVTPVSFSHPL 225 >gi|192291819|ref|YP_001992424.1| hypothetical protein Rpal_3448 [Rhodopseudomonas palustris TIE-1] gi|192285568|gb|ACF01949.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris TIE-1] Length = 537 Score = 36.5 bits (83), Expect = 7.5, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 54/218 (24%), Gaps = 70/218 (32%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 R++ +I+K + G + V+I L + + + V G T Sbjct: 78 PRKRLQLDHKAEKQIEKQATKPQGPVVIAVSIEQQKLRVYDANGLFAETPVSTGMRGHST 137 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+ + + I M +++ + W Sbjct: 138 PMGVFSVIQKSKYHRSN----IYSGAPMPYMQR------------------------ITW 169 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + +H P + GC+R+ Sbjct: 170 S------------------------------GIALHAGALPGY------PASHGCIRMPM 193 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 + +W W+R +V TPV + + Sbjct: 194 TFAVKMW------GWTRMGARVIVAPGDVTPVSFSHPL 225 >gi|182679997|ref|YP_001834143.1| lytic murein transglycosylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182635880|gb|ACB96654.1| lytic murein transglycosylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 422 Score = 36.5 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 14/99 (14%) Query: 72 KETIAQTEKAIAFYQDILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 + A + +A Q+I GG WPE L S +++RL G Sbjct: 326 SDAYALSLAWLA--QEIKGEGGLRGSWPE-TGPEL----SRKEKAAIQQRLQKLGFY--Q 376 Query: 128 KGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLEAM 165 L F A+ +Q+R G + + Sbjct: 377 GTLDGRFGQASRDAIHAYQLRVDPGKADGFATQALYRQL 415 >gi|154247769|ref|YP_001418727.1| lytic murein transglycosylase [Xanthobacter autotrophicus Py2] gi|154161854|gb|ABS69070.1| lytic murein transglycosylase [Xanthobacter autotrophicus Py2] Length = 416 Score = 36.5 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNV 167 +Q +++RL +G + G A AV+ FQ + G+ G + L A+ Sbjct: 357 AELQEVQQRLTAAGF--DTGGADGRVGADTMRAVRGFQQKVGITPADGYASIAVLNALRQ 414 >gi|119351065|gb|ABL63428.1| matrix metalloproteinase 28 [Rattus norvegicus] Length = 507 Score = 36.5 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%) Query: 118 LIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L S F A++ FQ L SG++D +TL M P Sbjct: 40 LEKYGYLSEQGSKVPASTQF----SDAIREFQWVSQLPISGVLDRATLRQMTRP 89 >gi|328545614|ref|YP_004305723.1| Lysozyme [polymorphum gilvum SL003B-26A1] gi|326415355|gb|ADZ72418.1| Lysozyme [Polymorphum gilvum SL003B-26A1] Length = 313 Score = 36.5 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 3/46 (6%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDS 159 + L G D L AV+ FQ H L G++ Sbjct: 189 QAILARLGHYD--GALDGLAGPRTTKAVRAFQSGHPHLKVDGLLGP 232 >gi|157786402|ref|YP_001491579.1| gp8 [Mycobacterium phage U2] gi|40769322|gb|AAR89648.1| gp8 [Mycobacterium phage U2] Length = 322 Score = 36.5 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 101 PLHLGNSSVSVQRLRERLII--SGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 PL LG+ + +V+R RE + +G P + F E+ ++ R G Sbjct: 2 PLKLGDRNPTVRRWREVMAARFAGYARIHGPLPTDTDEFGPRAEAWQTEYESRTFQPLDG 61 Query: 156 MVDSSTLEAMNVPV--DLRIRQLQVNLMRIKKL------LEQKMGLRYVLVNI-PAASLE 206 +V L A+ +P D R L V+ + + +++G Y+ + P + + Sbjct: 62 IVSDDDLRALGIPAPEDSRPVLLTVSGTGVPWWIGPDADVARRLGDVYLWRPVGPPYTAQ 121 Query: 207 AVENG 211 A G Sbjct: 122 AFPMG 126 >gi|163796472|ref|ZP_02190432.1| Sel1 domain protein repeat-containing protein [alpha proteobacterium BAL199] gi|159178322|gb|EDP62866.1| Sel1 domain protein repeat-containing protein [alpha proteobacterium BAL199] Length = 829 Score = 36.5 bits (83), Expect = 7.8, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G + V ++ L G D L A+ +Q+R GL +G Sbjct: 769 GVAEEDVAAIQRGLSRLGLYD--GALDGIAGPKTRDAISRYQVREGLPANG 817 >gi|114320728|ref|YP_742411.1| hypothetical protein Mlg_1574 [Alkalilimnicola ehrlichii MLHE-1] gi|114227122|gb|ABI56921.1| protein of unknown function DUF214 [Alkalilimnicola ehrlichii MLHE-1] Length = 789 Score = 36.5 bits (83), Expect = 7.9, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 82 IAFYQDILSRGGWPELPIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 +A Q +L G + L G+ + V+ LRER I+G + + +D + Sbjct: 598 LATLQRLLGEG--SAVSGARLQLLPGDRASVVEALRERPGIAGIAEREAAIDSFYD-TLA 654 Query: 140 SAVKLF 145 V +F Sbjct: 655 ETVLMF 660 >gi|332845157|ref|XP_001165615.2| PREDICTED: matrix metalloproteinase-25 [Pan troglodytes] Length = 562 Score = 36.5 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A+K+ Q GL +G +D T+ M+ P Sbjct: 36 LTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMHKP 88 >gi|75675776|ref|YP_318197.1| hypothetical protein Nwi_1584 [Nitrobacter winogradskyi Nb-255] gi|74420646|gb|ABA04845.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter winogradskyi Nb-255] Length = 493 Score = 36.5 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 12/67 (17%) Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 MH P + GC+R+ +D V + W+R ++ + TP Sbjct: 176 GIAMHAGALPGY------PASHGCIRM--PLDFAVKM----WGWTRIGARVIITPGEVTP 223 Query: 380 VKLATEV 386 + + Sbjct: 224 ADFSHPL 230 >gi|114567173|ref|YP_754327.1| hypothetical protein Swol_1658 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338108|gb|ABI68956.1| hypothetical protein Swol_1658 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 183 Score = 36.5 bits (83), Expect = 8.0, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 12/93 (12%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S+ +A + A Y+D + + I+ L + + LI L Sbjct: 99 SEPGVAPVRRPRASYRDE----PYSRVNIQLLTIEELDAVIAE----LIKQEYLQQKPAN 150 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + +A+ FQ H L P+G VD++TL+ Sbjct: 151 E----EELSNALSQFQSDHNLTPTGQVDAATLK 179 >gi|260432274|ref|ZP_05786245.1| peptidoglycan binding domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416102|gb|EEX09361.1| peptidoglycan binding domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 432 Score = 36.5 bits (83), Expect = 8.1, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 17/87 (19%) Query: 87 DILSRGG----WPELPIRPLHLGNSSVSVQR---LRERLIISGDLDPSKGLSVAFDAYVE 139 + +G WP G+ +SV L+ RL ++G ++ + Sbjct: 356 RLAGQGPFRANWPR--------GDRVLSVAERKELQLRLTLAGF--DTQAIDGRIGPNTI 405 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +A++ +Q+ GL P G LE M Sbjct: 406 NALRAYQVARGLVPDGYATVQLLERMR 432 >gi|281343370|gb|EFB18954.1| hypothetical protein PANDA_015650 [Ailuropoda melanoleuca] Length = 554 Score = 36.5 bits (83), Expect = 8.2, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Query: 114 LRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP--- 168 L+ L G L P + +A+ Q +GL +G D+ T++AM P Sbjct: 6 LQAWLQQYGYLPPGDLRTHTQRSPQSFSAAIAAMQKFYGLRVTGKADADTMKAMRRPRCG 65 Query: 169 -VDLRIRQLQVNLMRIK 184 D +++ N+ R + Sbjct: 66 VPDKFGAEIKANVRRKR 82 >gi|297199933|ref|ZP_06917330.1| membrane protein [Streptomyces sviceus ATCC 29083] gi|197710401|gb|EDY54435.1| membrane protein [Streptomyces sviceus ATCC 29083] Length = 444 Score = 36.5 bits (83), Expect = 8.2, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 8/77 (10%) Query: 97 LPIRP----LHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQMRHG- 150 +P P G ++ V +L +L+ G + G + V+ FQ G Sbjct: 366 VPGYPGRAMFRPGATNEYVTQLGRQLVKKGFGKYYTTGPGPRWGEPDRRGVEAFQRAQGW 425 Query: 151 --LDPSGMVDSSTLEAM 165 G T + Sbjct: 426 RGGAADGYPGPETWRRL 442 >gi|254521509|ref|ZP_05133564.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas sp. SKA14] gi|219719100|gb|EED37625.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas sp. SKA14] Length = 352 Score = 36.5 bits (83), Expect = 8.2, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 20/74 (27%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + +H P + GCVR+ L +T + T Sbjct: 123 DGIALHGGSLPG------HPASHGCVRL--PQAFAQKLFSET------------QRGDTV 162 Query: 379 PVKLATEVPVHFVY 392 V A P+ Y Sbjct: 163 VVADAKSSPMTLAY 176 >gi|328783162|ref|XP_001120736.2| PREDICTED: matrix metalloproteinase-25-like [Apis mellifera] Length = 419 Score = 36.5 bits (83), Expect = 8.3, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 113 RLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 +++ L+ G L S + D + A+K Q G+ +G +D +T++ M +P Sbjct: 30 KVQNYLMKFGYLPQSDLETGNLRTDDQLTDAIKNLQRFGGIPVTGDIDEATMKLMRLPRC 89 Query: 171 LRIRQLQVNLMRIK 184 ++ R++ Sbjct: 90 GLPDKVDPRYTRVR 103 >gi|90424308|ref|YP_532678.1| lytic murein transglycosylase [Rhodopseudomonas palustris BisB18] gi|90106322|gb|ABD88359.1| Lytic murein transglycosylase [Rhodopseudomonas palustris BisB18] Length = 405 Score = 36.5 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNV 167 VQ ++ RL +G + G A++ +Q + GL G L A+ Sbjct: 346 AEVQEMQTRLTRAGF--DTGGTDGRVGNDTMKAIRDYQSKIGLSPADGYGGLQVLAALRQ 403 >gi|301776492|ref|XP_002923668.1| PREDICTED: matrix metalloproteinase-28-like [Ailuropoda melanoleuca] Length = 635 Score = 36.5 bits (83), Expect = 8.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L+ + A +A++ FQ L SG++D +TL M P Sbjct: 71 LEKYGYLNEQVPKDLT-AARFSNAIREFQWVSQLPISGVLDPATLRQMTRP 120 >gi|257093810|ref|YP_003167451.1| lytic murein transglycosylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046334|gb|ACV35522.1| lytic murein transglycosylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 410 Score = 36.5 bits (83), Expect = 8.6, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 2/92 (2%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AIA D + G P G S + L+ L G P + A Sbjct: 321 AIAHLSDRIKGGKPFVTPWPTDDPGLSRRERRELQTLLAARGY--PIGEIDGMIGANSRQ 378 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 A++ Q R G+ G L + R Sbjct: 379 AIQAEQKRLGVAADGRPGQKLLNTLRADPPSR 410 >gi|325000684|ref|ZP_08121796.1| hypothetical protein PseP1_18032 [Pseudonocardia sp. P1] Length = 430 Score = 36.5 bits (83), Expect = 8.7, Method: Composition-based stats. Identities = 26/149 (17%), Positives = 46/149 (30%), Gaps = 32/149 (21%) Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 +TV V R T + + + + RS I K ++ ++ Sbjct: 245 HTTVRVHGALRGTDLGDGTWATEDVDRTFTVGRSQIVK-----------ADTRSHQIVVV 293 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA-STKIEFYSR---------------- 318 GKE+ + + PN + R G M S K+ + Sbjct: 294 RDGKEIARYDASYGMESDPNRVTR--SGTHVVMGKSEKVLMTNEAYGYVDEPQYWAVRIS 351 Query: 319 -NNTYMHDTPEPILFNNVVRFETSGCVRV 346 N ++H P + R + GCV + Sbjct: 352 NNGEFIHANPS-SSYAQGNRNVSHGCVNL 379 >gi|284042052|ref|YP_003392392.1| peptidoglycan-binding protein [Conexibacter woesei DSM 14684] gi|283946273|gb|ADB49017.1| Peptidoglycan-binding domain 1 protein [Conexibacter woesei DSM 14684] Length = 405 Score = 36.5 bits (83), Expect = 8.8, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 6/80 (7%) Query: 95 PELPI-RPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P+ RP G VQ+L L G + +F +A++ Q G+ Sbjct: 112 GTVPMWRPFERGMPDGPDVQQLEAGLQAMGYFA--GTVDRSFTELTATAIERMQRALGVS 169 Query: 153 PSGMVDSSTLEAMNVPVDLR 172 + T D Sbjct: 170 C--VAPPRTARRAPSAADSP 187 >gi|12060394|dbj|BAB20584.1| membrane-type 6 matrix metalloproteinase [Homo sapiens] Length = 562 Score = 36.5 bits (83), Expect = 8.8, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A+K+ Q GL +G +D T+ M P Sbjct: 36 LTRYGYLPPPHRAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKP 88 >gi|270012816|gb|EFA09264.1| matrix metalloproteinase 2 [Tribolium castaneum] Length = 701 Score = 36.5 bits (83), Expect = 8.9, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%) Query: 114 LRERLIISGDLDPSKGLSVAF----DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L G +D AF + V A+K Q G+ +G +D TL+ +N P Sbjct: 106 VQRYLTRFGYMD--ATADGAFALRTEESVRDAIKDMQEFAGIPVTGRLDERTLKLLNTP 162 >gi|213612519|ref|ZP_03370345.1| hypothetical protein SentesTyp_08467 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 166 Score = 36.5 bits (83), Expect = 8.9, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 190 KMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVI 246 +++N+ L + GK + +G++ D TP + + I+ NP W Sbjct: 98 DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTP 157 Query: 247 PRSIIQK 253 +I + Sbjct: 158 TTNIRAR 164 >gi|260820672|ref|XP_002605658.1| hypothetical protein BRAFLDRAFT_264562 [Branchiostoma floridae] gi|229290993|gb|EEN61668.1| hypothetical protein BRAFLDRAFT_264562 [Branchiostoma floridae] Length = 499 Score = 36.5 bits (83), Expect = 8.9, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 23/129 (17%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L+ G L + + A+ Q GL+ +G +D TL+ M P + Sbjct: 51 LMKFGYLKQDGKMRT--GEDLREAIITMQRFGGLEETGKLDEGTLKLMQSPRCGVADIIG 108 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 E RY LV + K L ++ R TP L + Sbjct: 109 TA--------ETTRKKRYALVG------YYWQ--KKNLTYRIV-----RTTPQLSPYVVH 147 Query: 238 IMFNPYWVI 246 + + Sbjct: 148 DAIRRAFNV 156 >gi|194364758|ref|YP_002027368.1| hypothetical protein Smal_0980 [Stenotrophomonas maltophilia R551-3] gi|194347562|gb|ACF50685.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas maltophilia R551-3] Length = 361 Score = 36.5 bits (83), Expect = 8.9, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 20/74 (27%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + +H P + GCVR+ L +T + T Sbjct: 132 DGIALHGGSLPG------HPASHGCVRL--PQAFAQKLFSET------------QRGDTV 171 Query: 379 PVKLATEVPVHFVY 392 V A P+ Y Sbjct: 172 VVADAKSSPMTLAY 185 >gi|126732466|ref|ZP_01748265.1| PKD repeat protein [Sagittula stellata E-37] gi|126707105|gb|EBA06172.1| PKD repeat protein [Sagittula stellata E-37] Length = 632 Score = 36.5 bits (83), Expect = 9.0, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 12/95 (12%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL----EAMNVPV 169 ++ L G F SAV+ FQ + ++ SG + +S L + N Sbjct: 443 IQHTLDALGY--GLGEPDGLFGPASRSAVRAFQKENLIEESGYLSASLLDRIADEYNGAP 500 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 ++ +R + + PA Sbjct: 501 ATLDGTYRI-FIRRRW-----DDAYHRRKPDPAYR 529 >gi|126730969|ref|ZP_01746778.1| Lytic murein transglycosylase [Sagittula stellata E-37] gi|126708685|gb|EBA07742.1| Lytic murein transglycosylase [Sagittula stellata E-37] Length = 333 Score = 36.5 bits (83), Expect = 9.1, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + L+ L +G + E+A++ +Q G+ +G + L Sbjct: 272 RYGLDLDDRKALQRGLTRAGF--DAGTPDGVLGKKTEAAIRAYQQSRGMTVTGSPSRALL 329 Query: 163 EAMN 166 +A+ Sbjct: 330 DAVA 333 >gi|73968283|ref|XP_848410.1| PREDICTED: similar to Matrix metalloproteinase-19 precursor (MMP-19) (Matrix metalloproteinase RASI) (MMP-18) [Canis familiaris] Length = 547 Score = 36.5 bits (83), Expect = 9.1, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L F + A++ FQ L SG +D +T M P Sbjct: 33 LLQYGYLQKPLEGPDNFRPEDIMEALRTFQEASELPVSGQLDDATRARMRQP 84 >gi|225871960|ref|YP_002753414.1| hypothetical protein ACP_0269 [Acidobacterium capsulatum ATCC 51196] gi|225794111|gb|ACO34201.1| hypothetical protein ACP_0269 [Acidobacterium capsulatum ATCC 51196] Length = 151 Score = 36.5 bits (83), Expect = 9.2, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +S V++++ LI L ++ ++A++ +Q HG Sbjct: 55 MASSRVEQIQAALIREHYLTGEPNGD--WNDETQAAMRKYQADHG 97 >gi|110633235|ref|YP_673443.1| peptidoglycan binding domain-containing protein [Mesorhizobium sp. BNC1] gi|110284219|gb|ABG62278.1| Peptidoglycan-binding domain 1 [Chelativorans sp. BNC1] Length = 266 Score = 36.5 bits (83), Expect = 9.3, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 4/96 (4%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S+ A + ++ G+S ++ +++ L G + + Sbjct: 169 SQIDGALLHQLGLRDDGQAAQEASTAPQTASAEPGDS--NISKVQAGLKAFG--NDGIEI 224 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 A++ FQ GL +G D+ + M Sbjct: 225 DGMMGERTREAIREFQSLFGLPVTGEPDAPLVAKMR 260 >gi|260818324|ref|XP_002604333.1| hypothetical protein BRAFLDRAFT_125272 [Branchiostoma floridae] gi|229289659|gb|EEN60344.1| hypothetical protein BRAFLDRAFT_125272 [Branchiostoma floridae] Length = 524 Score = 36.5 bits (83), Expect = 9.3, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 118 LIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L + V +A+KL Q +GL +G +D STLEAM P Sbjct: 74 LENYGYLREEDMRDDIASISDVSAAIKLVQYNYGLRMTGRMDESTLEAMRRP 125 >gi|190573161|ref|YP_001971006.1| hypothetical protein Smlt1135 [Stenotrophomonas maltophilia K279a] gi|190011083|emb|CAQ44692.1| putative ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas maltophilia K279a] Length = 361 Score = 36.5 bits (83), Expect = 9.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 20/74 (27%) Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + +H P + GCVR+ L +T + T Sbjct: 132 DGIALHGGSLPG------HPASHGCVRL--PQAFAQKLFSET------------QRGDTV 171 Query: 379 PVKLATEVPVHFVY 392 V A P+ Y Sbjct: 172 VVADAKSSPMTLAY 185 >gi|326533208|dbj|BAJ93576.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 357 Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + LR L G + + D V V L+Q GL +G +D+ TL+ Sbjct: 57 GANGSVTDGLRRYLARFGYASSAPDDA---DGRVV--VSLYQSTLGLPVTGRLDAPTLDL 111 Query: 165 MNVP 168 + P Sbjct: 112 LATP 115 >gi|326492816|dbj|BAJ90264.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 356 Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + LR L G + + D V V L+Q GL +G +D+ TL+ Sbjct: 56 GANGSVTDGLRRYLARFGYASSAPDDA---DGRVV--VSLYQSTLGLPVTGRLDAPTLDL 110 Query: 165 MNVP 168 + P Sbjct: 111 LATP 114 >gi|148265496|ref|YP_001232202.1| peptidoglycan binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146398996|gb|ABQ27629.1| Peptidoglycan-binding domain 1 protein [Geobacter uraniireducens Rf4] Length = 580 Score = 36.2 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 3/57 (5%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +LP R L G S V++L++ L G + + AV + G Sbjct: 118 GKLPAYRDLVPGISGDDVRQLQQGLKRLGY--HPGPIDGIYTHQTSIAVAKWYKSKG 172 >gi|302560700|ref|ZP_07313042.1| secreted protein [Streptomyces griseoflavus Tu4000] gi|302478318|gb|EFL41411.1| secreted protein [Streptomyces griseoflavus Tu4000] Length = 195 Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 16/89 (17%) Query: 110 SVQRLRERLI----ISGDLDPSKGLSVAFDAYVESAVKLFQM--RHGLDPSGMV------ 157 + +LR +L + D + D V+ ++ LFQ HG + G + Sbjct: 93 EIAQLRLKLRTSMRATQDALETAAAE---DQSVKESLALFQRLSAHGHELDGELRRMESE 149 Query: 158 -DSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 D +T+ A + R ++ + ++ Sbjct: 150 PDRATVAARLADLRERTERITSSADALRW 178 >gi|119897349|ref|YP_932562.1| hypothetical protein azo1058 [Azoarcus sp. BH72] gi|119669762|emb|CAL93675.1| conserved hypothetical secreted protein [Azoarcus sp. BH72] Length = 398 Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 50/189 (26%), Gaps = 51/189 (26%) Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 R Y + ++ + + R + + + + + Sbjct: 157 KPRFVADYYASHGKAGAEKMREGDNRTPLGVYHVTSFIEPKRLPDFYGS--GAFPLNYPN 214 Query: 318 ---------RNNTYMHDTPEPILFNNVVRFETSGCVRVRN------------------II 350 + ++H TP ++ + + GCV + N I Sbjct: 215 DWDKRLGRTGHGIWLHGTPS-DTYSRPPKA-SEGCVVLTNQDFTSLSSYVEPGSTPVIIS 272 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII-----QF 405 + WL D SR + + ++ + L D ++ +F Sbjct: 273 NEVEWLSLDDWQSSRRSLNDAIERWRRDWESL---------------DVDRLLSNYSREF 317 Query: 406 RDDIYGLDN 414 R D Y D Sbjct: 318 RSDRYDRDG 326 >gi|157818219|ref|NP_001099638.1| matrix metallopeptidase 15 [Rattus norvegicus] gi|149032397|gb|EDL87288.1| rCG39153 [Rattus norvegicus] Length = 657 Score = 36.2 bits (82), Expect = 10.0, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L + G L + + SA+ Q +G+ +G++D T M P Sbjct: 53 LRLYGYLPQPSRHMSTMRSAQILASALAEMQSFYGIPVTGVLDEETKTWMKRP 105 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.310 0.137 0.396 Lambda K H 0.267 0.0422 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,605,969,606 Number of Sequences: 14124377 Number of extensions: 150479857 Number of successful extensions: 617354 Number of sequences better than 10.0: 6459 Number of HSP's better than 10.0 without gapping: 3060 Number of HSP's successfully gapped in prelim test: 3399 Number of HSP's that attempted gapping in prelim test: 604184 Number of HSP's gapped (non-prelim): 8458 length of query: 431 length of database: 4,842,793,630 effective HSP length: 142 effective length of query: 289 effective length of database: 2,837,132,096 effective search space: 819931175744 effective search space used: 819931175744 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 83 (36.5 bits)