HHsearch alignment for GI: 254780351 and conserved domain: COG1339
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism].
Probab=97.87 E-value=6.3e-05 Score=51.57 Aligned_cols=62 Identities=26% Similarity=0.295 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 96889999985477105679999999778878863610071056445788999999999999999
Q gi|254780351|r 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRH 134 (171)
Q Consensus 70 ~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~ 134 (171)
T Consensus 19 ~~t~~ela~~l~~S~qta~R~l~~le~~~~I~R~~~~---~Gq~i~iTekG~~~L~~~~~d~~r~ 80 (214)
T COG1339 19 KVTSSELAKRLGVSSQTAARKLKELEDEGYITRTISK---RGQLITITEKGIDLLYKEYEDLSRI 80 (214)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECC---CCCEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 0208999988574707788998864117847888337---9848981676899999999999999