HHsearch alignment for GI: 254780351 and conserved domain: PRK03573
>PRK03573 transcriptional regulator SlyA; Provisional.
Probab=99.89 E-value=1.3e-21 Score=158.91 Aligned_cols=128 Identities=19% Similarity=0.255 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC-C-CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999999999999850257999999999999321-7-968899999854771056799999997788788636100
Q gi|254780351|r 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGD-L-ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRID 108 (171)
Q Consensus 31 lv~rl~r~l~~~~~~~l~~~g~~~l~~~q~~~L~~~~~-~-~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D 108 (171)
T Consensus 8 ~l~r~~r~~r~~~~~~L~~---~gLt~~q~~~L~~L~~~~~g~tq~eLa~~l~v~~~t~tr~ld~LE~~GlI~R~~~~~D 84 (144)
T PRK03573 8 DLARLVRIWRALIDHRLKP---LELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASD 84 (144)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999999999999999886---6998259999999997398989999999979878369999999998889786228676
Q ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7105644578899999999999999999998534999899999999999999998
Q gi|254780351|r 109 KRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQRLNRFW 163 (171)
Q Consensus 109 ~R~~~i~LT~~G~~~~~~~~~~~~~~~~~l~~~~~ls~ee~~~l~~~L~rler~~ 163 (171)
T Consensus 85 rR~~~i~LT~~G~~l~~~~~~~~~~~~~~~--~~~ls~eE~~~l~~~L~ki~~Nl 137 (144)
T PRK03573 85 RRAKRIKLTEKAEPLISEMEAVINKTRAEI--LHGISSEEIEQLIKLIAKLEHNI 137 (144)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 754676788879999999999999999999--81999999999999999999999