HHsearch alignment for GI: 254780351 and conserved domain: PRK09906

>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional.
Probab=97.01  E-value=0.0072  Score=38.37  Aligned_cols=72  Identities=13%  Similarity=0.154  Sum_probs=51.0

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC-CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999932179688999998547710567999999977-887886361007105644578899999999999999999
Q gi|254780351|r   59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL-GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIE  136 (171)
Q Consensus        59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~-G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~  136 (171)
T Consensus         5 ~L~~F~~va~~-gs~s~AA~~L~iSQpalS~~I~~LE~~lG~~Lf~R~-----~r~v~LT~aG~~l~~~a~~il~~~~~   77 (296)
T PRK09906          5 HLRYFVAVAEE-LNFTKAAEKLHTAQPSLSQQIKDLENCVGVPLLVRD-----KRKVALTAAGEVFLQDARLILEQAEK   77 (296)
T ss_pred             HHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-----CCCCEECHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999980-999999999888878999999999998598879988-----99512787089999999999999999