HHsearch alignment for GI: 254780351 and conserved domain: PRK10082

>PRK10082 putative DNA-binding transcriptional regulator; Provisional.
Probab=97.45  E-value=0.0016  Score=42.49  Aligned_cols=82  Identities=10%  Similarity=0.144  Sum_probs=59.8

Q ss_pred             CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf             799999999999932179688999998547710567999999977---88788636100710564457889999999999
Q gi|254780351|r   53 SDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQ  129 (171)
Q Consensus        53 ~~l~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~  129 (171)
T Consensus         9 ~nmelr~L~~F~~Vae~-gSFs~AA~~L~itQpavS~~I~~LE~~LGv~Lf~-------R~tr~v~LT~aG~~~~~~a~~   80 (303)
T PRK10082          9 HNIETKWLYDFLTLEKC-RNFSQAAVSRNVSQPAFSRRIRALEQAIGVELFN-------RQVTPLQLSEQGKIFHSQIRH   80 (303)
T ss_pred             CCCCHHHHHHHHHHHHC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEE-------ECCCCEEECHHHHHHHHHHHH
T ss_conf             46629999999999980-9999999997898159999999999996995086-------799983036889999999999


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             9999999998534
Q gi|254780351|r  130 LYQRHIESIDKVG  142 (171)
Q Consensus       130 ~~~~~~~~l~~~~  142 (171)
T Consensus        81 il~~le~~~~~l~   93 (303)
T PRK10082         81 LLQQLESNLAELR   93 (303)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999986