HHsearch alignment for GI: 254780351 and conserved domain: PRK10225
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional.
Probab=96.29 E-value=0.1 Score=31.00 Aligned_cols=87 Identities=20% Similarity=0.123 Sum_probs=55.1
Q ss_pred C-CHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEE-ECHHHHH--------------HHHHHHHHHHHH
Q ss_conf 6-88999998547710567999999977887886361007105644-5788999--------------999999999999
Q gi|254780351|r 71 L-TAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRIS-LTQSGKE--------------IAETISQLYQRH 134 (171)
Q Consensus 71 ~-t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~-LT~~G~~--------------~~~~~~~~~~~~ 134 (171)
T Consensus 33 LP~EreLAe~lgVSRt~VREAL~~Le~~GLV~~r~G----~Gt~V~~~~~~~~~~~~~~~~~~~~~~~el~e~R~~LE~~ 108 (257)
T PRK10225 33 LPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRG----AGIYVLDSSGSHNTDSPDANVCNDAGPFELLQARQLLESN 108 (257)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC----CEEEEECCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 952999999979887899999999998899799648----8778826870421010556641336689999999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999853499989999999999999999
Q gi|254780351|r 135 IESIDKVGGLSVDDFIAMNKLLQRLNRF 162 (171)
Q Consensus 135 ~~~l~~~~~ls~ee~~~l~~~L~rler~ 162 (171)
T Consensus 109 ~A~lA-A~r~t~~dl~~l~~~l~~~~~~ 135 (257)
T PRK10225 109 IAEFA-ALQATREDIVKMRQALQLEERE 135 (257)
T ss_pred HHHHH-HHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999-9959999999999999999999