HHsearch alignment for GI: 254780351 and conserved domain: PRK10225

>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional.
Probab=96.29  E-value=0.1  Score=31.00  Aligned_cols=87  Identities=20%  Similarity=0.123  Sum_probs=55.1

Q ss_pred             C-CHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEE-ECHHHHH--------------HHHHHHHHHHHH
Q ss_conf             6-88999998547710567999999977887886361007105644-5788999--------------999999999999
Q gi|254780351|r   71 L-TAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRIS-LTQSGKE--------------IAETISQLYQRH  134 (171)
Q Consensus        71 ~-t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~-LT~~G~~--------------~~~~~~~~~~~~  134 (171)
T Consensus        33 LP~EreLAe~lgVSRt~VREAL~~Le~~GLV~~r~G----~Gt~V~~~~~~~~~~~~~~~~~~~~~~~el~e~R~~LE~~  108 (257)
T PRK10225         33 LPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRG----AGIYVLDSSGSHNTDSPDANVCNDAGPFELLQARQLLESN  108 (257)
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC----CEEEEECCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             952999999979887899999999998899799648----8778826870421010556641336689999999999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999853499989999999999999999
Q gi|254780351|r  135 IESIDKVGGLSVDDFIAMNKLLQRLNRF  162 (171)
Q Consensus       135 ~~~l~~~~~ls~ee~~~l~~~L~rler~  162 (171)
T Consensus       109 ~A~lA-A~r~t~~dl~~l~~~l~~~~~~  135 (257)
T PRK10225        109 IAEFA-ALQATREDIVKMRQALQLEERE  135 (257)
T ss_pred             HHHHH-HHHCCHHHHHHHHHHHHHHHHH
T ss_conf             99999-9959999999999999999999