HHsearch alignment for GI: 254780351 and conserved domain: PRK10341
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional.
Probab=97.34 E-value=0.0024 Score=41.44 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=53.9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r 59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI 135 (171)
Q Consensus 59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~ 135 (171)
T Consensus 11 qL~~F~aVa~~g-S~t~AA~~L~iSQpavS~~I~~LE~eLG~~LF~R~-------~r~v~LT~~G~~l~~~a~~il~~~~ 82 (312)
T PRK10341 11 HLVVFQEVIRSG-SIGSAAKELGLTQPAVSKIINDIEDYFGVELIVRK-------NTGVTLTPAGQVLLSRSESITREMK 82 (312)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCCEECHHHHHHHHHHHHHHHHHH
T ss_conf 999999999819-99999999888878999999999998498528988-------9986167889999999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780351|r 136 ESI 138 (171)
Q Consensus 136 ~~l 138 (171)
T Consensus 83 ~~~ 85 (312)
T PRK10341 83 NMV 85 (312)
T ss_pred HHH
T ss_conf 999