HHsearch alignment for GI: 254780351 and conserved domain: PRK10341

>PRK10341 DNA-binding transcriptional activator TdcA; Provisional.
Probab=97.34  E-value=0.0024  Score=41.44  Aligned_cols=72  Identities=11%  Similarity=0.140  Sum_probs=53.9

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf             999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r   59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI  135 (171)
Q Consensus        59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~  135 (171)
T Consensus        11 qL~~F~aVa~~g-S~t~AA~~L~iSQpavS~~I~~LE~eLG~~LF~R~-------~r~v~LT~~G~~l~~~a~~il~~~~   82 (312)
T PRK10341         11 HLVVFQEVIRSG-SIGSAAKELGLTQPAVSKIINDIEDYFGVELIVRK-------NTGVTLTPAGQVLLSRSESITREMK   82 (312)
T ss_pred             HHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCCEECHHHHHHHHHHHHHHHHHH
T ss_conf             999999999819-99999999888878999999999998498528988-------9986167889999999999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780351|r  136 ESI  138 (171)
Q Consensus       136 ~~l  138 (171)
T Consensus        83 ~~~   85 (312)
T PRK10341         83 NMV   85 (312)
T ss_pred             HHH
T ss_conf             999