HHsearch alignment for GI: 254780351 and conserved domain: PRK10434
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional.
Probab=95.44 E-value=0.037 Score=33.75 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=39.7
Q ss_pred HHHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 9999932-1796889999985477105679999999778878863610
Q gi|254780351|r 61 LLLFNIG-DLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRI 107 (171)
Q Consensus 61 ~~L~~~~-~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~ 107 (171)
T Consensus 9 ~Il~~L~~~g~v~v~eLa~~l~VS~~TIRRDL~~Le~~G~l~R~hGGa 56 (256)
T PRK10434 9 AILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGV 56 (256)
T ss_pred HHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECEE
T ss_conf 999999986979999999987969989998499998789889994738