HHsearch alignment for GI: 254780351 and conserved domain: PRK11062
>PRK11062 nhaR transcriptional activator NhaR; Provisional.
Probab=96.74 E-value=0.031 Score=34.25 Aligned_cols=73 Identities=8% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 99999999999932179688999998547710567999999977---887886361007105644578899999999999
Q gi|254780351|r 54 DVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQL 130 (171)
Q Consensus 54 ~l~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 130 (171)
T Consensus 3 ~ln~~~L~~F~~va~~g-s~~~Aa~~L~~tq~~vS~qi~~LE~~lg~~Lf~R~-------~r~~~lT~~G~~~~~~a~~i 74 (296)
T PRK11062 3 HLNYNHLYYFWMVYKEG-SVVGAAEALFLTPQTITGQIKALEERLQGKLFKRK-------GRGLEPTELGELVFRYADKM 74 (296)
T ss_pred CCCHHHHHHHHHHHHCC-CHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEC-------CCCEEECHHHHHHHHHHHHH
T ss_conf 88889999999999809-99999999689817999999999999599109988-------99828858999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780351|r 131 YQRH 134 (171)
Q Consensus 131 ~~~~ 134 (171)
T Consensus 75 ~~l~ 78 (296)
T PRK11062 75 FTLS 78 (296)
T ss_pred HHHH
T ss_conf 9999