HHsearch alignment for GI: 254780351 and conserved domain: PRK11062

>PRK11062 nhaR transcriptional activator NhaR; Provisional.
Probab=96.74  E-value=0.031  Score=34.25  Aligned_cols=73  Identities=8%  Similarity=0.100  Sum_probs=54.4

Q ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf             99999999999932179688999998547710567999999977---887886361007105644578899999999999
Q gi|254780351|r   54 DVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQL  130 (171)
Q Consensus        54 ~l~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~  130 (171)
T Consensus         3 ~ln~~~L~~F~~va~~g-s~~~Aa~~L~~tq~~vS~qi~~LE~~lg~~Lf~R~-------~r~~~lT~~G~~~~~~a~~i   74 (296)
T PRK11062          3 HLNYNHLYYFWMVYKEG-SVVGAAEALFLTPQTITGQIKALEERLQGKLFKRK-------GRGLEPTELGELVFRYADKM   74 (296)
T ss_pred             CCCHHHHHHHHHHHHCC-CHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEC-------CCCEEECHHHHHHHHHHHHH
T ss_conf             88889999999999809-99999999689817999999999999599109988-------99828858999999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780351|r  131 YQRH  134 (171)
Q Consensus       131 ~~~~  134 (171)
T Consensus        75 ~~l~   78 (296)
T PRK11062         75 FTLS   78 (296)
T ss_pred             HHHH
T ss_conf             9999