HHsearch alignment for GI: 254780351 and conserved domain: PRK11074
>PRK11074 putative DNA-binding transcriptional regulator; Provisional.
Probab=97.19 E-value=0.0052 Score=39.24 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 9999999932179688999998547710567999999977---8878863610071056445788999999999999999
Q gi|254780351|r 58 VQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRH 134 (171)
Q Consensus 58 ~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~ 134 (171)
T Consensus 5 ~~L~~F~aVa~~g-Sft~AA~~L~isqsaVS~~I~~LE~~LG~~Lf~R~-------~r~v~LT~aG~~ll~~a~~il~~~ 76 (300)
T PRK11074 5 YSLEVVDAVARNG-SFSAAAQELHKVPSAVSYTVRQLEEWLAVPLFERR-------HRDVELTPAGEWFLKEARSVLKKM 76 (300)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCEEECHHHHHHHHHHHHHHHHH
T ss_conf 9999999999709-99999999788878999999999999599639987-------996699962899999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780351|r 135 IES 137 (171)
Q Consensus 135 ~~~ 137 (171)
T Consensus 77 ~~~ 79 (300)
T PRK11074 77 EET 79 (300)
T ss_pred HHH
T ss_conf 999