HHsearch alignment for GI: 254780351 and conserved domain: PRK11242

>PRK11242 DNA-binding transcriptional regulator CynR; Provisional.
Probab=97.13  E-value=0.0052  Score=39.29  Aligned_cols=70  Identities=9%  Similarity=0.073  Sum_probs=52.5

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf             999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r   59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI  135 (171)
Q Consensus        59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~  135 (171)
T Consensus         5 ~L~~F~~v~~~g-s~t~AA~~L~isQ~avS~~i~~LE~~lg~~Lf~R~-------~r~~~lT~~G~~l~~~a~~il~~~~   76 (292)
T PRK11242          5 HIRYFLAVAEHG-NFTRAAEALHVSQPTLSQQIRQLEESLGVQLFDRS-------GRTVRLTDAGEVYLRYARRALQDLE   76 (292)
T ss_pred             HHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCCEECHHHHHHHHHHHHHHHHHH
T ss_conf             999999999809-99999999887989999999999999698738988-------9985477369999999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780351|r  136 E  136 (171)
Q Consensus       136 ~  136 (171)
T Consensus        77 ~   77 (292)
T PRK11242         77 A   77 (292)
T ss_pred             H
T ss_conf             9