HHsearch alignment for GI: 254780351 and conserved domain: PRK11242
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional.
Probab=97.13 E-value=0.0052 Score=39.29 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=52.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 999999932179688999998547710567999999977---88788636100710564457889999999999999999
Q gi|254780351|r 59 QALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI 135 (171)
Q Consensus 59 q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~ 135 (171)
T Consensus 5 ~L~~F~~v~~~g-s~t~AA~~L~isQ~avS~~i~~LE~~lg~~Lf~R~-------~r~~~lT~~G~~l~~~a~~il~~~~ 76 (292)
T PRK11242 5 HIRYFLAVAEHG-NFTRAAEALHVSQPTLSQQIRQLEESLGVQLFDRS-------GRTVRLTDAGEVYLRYARRALQDLE 76 (292)
T ss_pred HHHHHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEC-------CCCCEECHHHHHHHHHHHHHHHHHH
T ss_conf 999999999809-99999999887989999999999999698738988-------9985477369999999999999999
Q ss_pred H
Q ss_conf 9
Q gi|254780351|r 136 E 136 (171)
Q Consensus 136 ~ 136 (171)
T Consensus 77 ~ 77 (292)
T PRK11242 77 A 77 (292)
T ss_pred H
T ss_conf 9