HHsearch alignment for GI: 254780351 and conserved domain: PRK11534

>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional.
Probab=96.08  E-value=0.13  Score=30.34  Aligned_cols=50  Identities=14%  Similarity=0.035  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHH
Q ss_conf             96889999985477105679999999778878863610071056445788999
Q gi|254780351|r   70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKE  122 (171)
Q Consensus        70 ~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~  122 (171)
T Consensus        30 ~L~e~~Lae~lgVSRtPVREAL~rL~~eGLV~~~p~r---G~~V~~~s~~~i~   79 (224)
T PRK11534         30 KLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQK---GYRVASMSEQELL   79 (224)
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC---EEEEEECCCHHHH
T ss_conf             5589999999798858999999999987998874797---3698227501099