HHsearch alignment for GI: 254780351 and conserved domain: PRK11534
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional.
Probab=96.08 E-value=0.13 Score=30.34 Aligned_cols=50 Identities=14% Similarity=0.035 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHH
Q ss_conf 96889999985477105679999999778878863610071056445788999
Q gi|254780351|r 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKE 122 (171)
Q Consensus 70 ~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~ 122 (171)
T Consensus 30 ~L~e~~Lae~lgVSRtPVREAL~rL~~eGLV~~~p~r---G~~V~~~s~~~i~ 79 (224)
T PRK11534 30 KLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQK---GYRVASMSEQELL 79 (224)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC---EEEEEECCCHHHH
T ss_conf 5589999999798858999999999987998874797---3698227501099