HHsearch alignment for GI: 254780351 and conserved domain: PRK11569
>PRK11569 transcriptional repressor IclR; Provisional.
Probab=96.71 E-value=0.0038 Score=40.12 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=38.6
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHH
Q ss_conf 2179688999998547710567999999977887886361007105644578899
Q gi|254780351|r 67 GDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGK 121 (171)
Q Consensus 67 ~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~ 121 (171)
T Consensus 40 ~~~~lsl~eia~~lglpksT~~RlL~tL~~~G~v~~~~~--~~~---Y~LG~~~~ 89 (274)
T PRK11569 40 SNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGE--LGH---WAIGAHAF 89 (274)
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC--CCE---ECCCHHHH
T ss_conf 899989999999879199999999999997698778699--880---22457999