HHsearch alignment for GI: 254780351 and conserved domain: PRK11569

>PRK11569 transcriptional repressor IclR; Provisional.
Probab=96.71  E-value=0.0038  Score=40.12  Aligned_cols=50  Identities=12%  Similarity=0.106  Sum_probs=38.6

Q ss_pred             HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHH
Q ss_conf             2179688999998547710567999999977887886361007105644578899
Q gi|254780351|r   67 GDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGK  121 (171)
Q Consensus        67 ~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~  121 (171)
T Consensus        40 ~~~~lsl~eia~~lglpksT~~RlL~tL~~~G~v~~~~~--~~~---Y~LG~~~~   89 (274)
T PRK11569         40 SNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGE--LGH---WAIGAHAF   89 (274)
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC--CCE---ECCCHHHH
T ss_conf             899989999999879199999999999997698778699--880---22457999