HHsearch alignment for GI: 254780351 and conserved domain: TIGR01884
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein; InterPro: IPR010163 Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity..
Probab=97.01 E-value=0.0019 Score=42.02 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHC--CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf 7999999999999321--7968899999854771056799999997788788636
Q gi|254780351|r 53 SDVNAVQALLLFNIGD--LELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRS 105 (171)
Q Consensus 53 ~~l~~~q~~~L~~~~~--~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~ 105 (171)
T Consensus 165 ~~~s~~~~~vL~~L~~~~Ge~~v~~iA~~lg~s~~T~~~~~~~Lek~gLv~~~~~ 219 (231)
T TIGR01884 165 AGLSREELKVLEALKAEKGEKSVKNIAKKLGKSLSTISRHLAELEKKGLVESKGR 219 (231)
T ss_pred CCCCHHHHHHHHHHHCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 7888999999999850788052877998857888799999998874475456304