HHsearch alignment for GI: 254780351 and conserved domain: TIGR01889
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family; InterPro: IPR010166 This entry represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family, IPR000835 from INTERPRO..
Probab=98.05 E-value=4.8e-05 Score=52.33 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----C---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 99999999985025799999999999932-----1---796889999985477105679999999778878863610071
Q gi|254780351|r 39 LLDVTRDEFERQGRSDVNAVQALLLFNIG-----D---LELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKR 110 (171)
Q Consensus 39 l~~~~~~~l~~~g~~~l~~~q~~~L~~~~-----~---~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R 110 (171)
T Consensus 13 l~~~lK~~~------~ls~~e~~~L~~l~~~~~~e~vl~~~~~K~i~~~~~~~~~~~~~~~k~L~~k~~l~K~Rs~~DER 86 (112)
T TIGR01889 13 LKRYLKKEF------NLSLEELLILYYLLKLEKNEKVLNKLTLKEIIKEILIKQSKLVKIIKKLSKKGYLSKERSEDDER 86 (112)
T ss_pred HHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 987311330------34699999999999986311454323088899875678346789998777504411478744653
Q ss_pred EEEEEECHHHHHHHHHHHHHHH
Q ss_conf 0564457889999999999999
Q gi|254780351|r 111 SIRISLTQSGKEIAETISQLYQ 132 (171)
Q Consensus 111 ~~~i~LT~~G~~~~~~~~~~~~ 132 (171)
T Consensus 87 ~v~i~~~~~q~~ki~~l~~~~~ 108 (112)
T TIGR01889 87 KVIISINKKQRSKIESLISEVE 108 (112)
T ss_pred EEEEEECHHHHHHHHHHHHHHH
T ss_conf 6777760777899999999987