HHsearch alignment for GI: 254780351 and conserved domain: TIGR01889

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family; InterPro: IPR010166 This entry represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family, IPR000835 from INTERPRO..
Probab=98.05  E-value=4.8e-05  Score=52.33  Aligned_cols=88  Identities=23%  Similarity=0.320  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----C---CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             99999999985025799999999999932-----1---796889999985477105679999999778878863610071
Q gi|254780351|r   39 LLDVTRDEFERQGRSDVNAVQALLLFNIG-----D---LELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKR  110 (171)
Q Consensus        39 l~~~~~~~l~~~g~~~l~~~q~~~L~~~~-----~---~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R  110 (171)
T Consensus        13 l~~~lK~~~------~ls~~e~~~L~~l~~~~~~e~vl~~~~~K~i~~~~~~~~~~~~~~~k~L~~k~~l~K~Rs~~DER   86 (112)
T TIGR01889        13 LKRYLKKEF------NLSLEELLILYYLLKLEKNEKVLNKLTLKEIIKEILIKQSKLVKIIKKLSKKGYLSKERSEDDER   86 (112)
T ss_pred             HHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             987311330------34699999999999986311454323088899875678346789998777504411478744653


Q ss_pred             EEEEEECHHHHHHHHHHHHHHH
Q ss_conf             0564457889999999999999
Q gi|254780351|r  111 SIRISLTQSGKEIAETISQLYQ  132 (171)
Q Consensus       111 ~~~i~LT~~G~~~~~~~~~~~~  132 (171)
T Consensus        87 ~v~i~~~~~q~~ki~~l~~~~~  108 (112)
T TIGR01889        87 KVIISINKKQRSKIESLISEVE  108 (112)
T ss_pred             EEEEEECHHHHHHHHHHHHHHH
T ss_conf             6777760777899999999987