HHsearch alignment for GI: 254780351 and conserved domain: TIGR02431
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; InterPro: IPR012794 Members of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0045941 positive regulation of transcription, 0046278 protocatechuate metabolic process.
Probab=90.48 E-value=0.34 Score=27.56 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHH
Q ss_conf 1796889999985477105679999999778878863610071056445788999999
Q gi|254780351|r 68 DLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAE 125 (171)
Q Consensus 68 ~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~ 125 (171)
T Consensus 22 ~~~ltl~~vA~~TGL~RAaARR~LLTL~~LGY~~~-----Dg~--~F~LTPrvL~LG~ 72 (252)
T TIGR02431 22 RPRLTLTDVAEATGLTRAAARRFLLTLVELGYVES-----DGR--LFWLTPRVLRLGY 72 (252)
T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEC-----CCC--CEECCHHHHHHHH
T ss_conf 78989899998758994798889984656230421-----798--3310246775332