HHsearch alignment for GI: 254780351 and conserved domain: TIGR02607
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family; InterPro: IPR013430 Proteins in this entry form a distinct group of helix-turn-helix proteins, which are strictly bacterial and nearly always shorter than 110 amino acids. They include the characterised member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is encoded by the upstream member of the gene pair.; GO: 0003677 DNA binding.
Probab=90.43 E-value=0.21 Score=28.99 Aligned_cols=38 Identities=18% Similarity=0.005 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99999999993217968899999854771056799999
Q gi|254780351|r 56 NAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKK 93 (171)
Q Consensus 56 ~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~ 93 (171)
T Consensus 6 HPGE~L~eEfL~PLg~s~~~LA~~LgVsr~~~sriv~~ 43 (81)
T TIGR02607 6 HPGEILLEEFLEPLGLSVRALAKALGVSRSTLSRIVNG 43 (81)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 88413287752104706899998709997888888744