HHsearch alignment for GI: 254780351 and conserved domain: TIGR02787
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY; InterPro: IPR014154 This entry represents pleiotropic repressors in Bacillus subtilis, CodY, and other Firmicutes (low-GC Gram-positive bacteria) that respond to intracellular levels of GTP and branched chain amino acids. All have a C-terminal helix-turn-helix DNA-binding region..
Probab=91.98 E-value=0.065 Score=32.21 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHH-----HC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 2579999999999993-----21-79688999998547710567999999977887886
Q gi|254780351|r 51 GRSDVNAVQALLLFNI-----GD-LELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQ 103 (171)
Q Consensus 51 g~~~l~~~q~~~L~~~-----~~-~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~ 103 (171)
T Consensus 177 Ai~TLSYSEL~AV~aIf~ELdG~EG~LvAS~IAD~vGITRSVIVNALRKlESAGvIESR 235 (255)
T TIGR02787 177 AINTLSYSELEAVEAIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESR 235 (255)
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEECC
T ss_conf 98720288999999998422899662775302071266033554543444207641302