HHsearch alignment for GI: 254780351 and conserved domain: TIGR03339
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=96.85 E-value=0.0064 Score=38.70 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=48.9
Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 99932179688999998547710567999999977---887886361007105644578899999999999999999
Q gi|254780351|r 63 LFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIE 136 (171)
Q Consensus 63 L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~ 136 (171)
T Consensus 5 F~~va~~g-s~s~AA~~L~isQpavS~~I~~LE~~lg~~Lf~R~~-------r~v~lT~~G~~l~~~a~~il~~~~~ 73 (279)
T TIGR03339 5 FHAVARCG-SFTRAAERLGLSQPTVTDQVRKLEERYGVELFHRNG-------RRLELTDAGHRLLPIVERLFQQEAE 73 (279)
T ss_pred HHHHHHHC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-------CCEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 99999809-999999998888899999999999985988599989-------8258994888999999999999999