HHsearch alignment for GI: 254780351 and conserved domain: TIGR03433

>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=97.81  E-value=0.00051  Score=45.73  Aligned_cols=83  Identities=19%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHH--------CCCCCHHHHHHHHHHHCCCEEEE--ECCCCCCEEEEEECHHHHHHHHHHH
Q ss_conf             9999999321796889999985--------47710567999999977887886--3610071056445788999999999
Q gi|254780351|r   59 QALLLFNIGDLELTAGELRSRG--------YYLGSNVSYNLKKLIDLGFIKHQ--RSRIDKRSIRISLTQSGKEIAETIS  128 (171)
Q Consensus        59 q~~~L~~~~~~~~t~~eLa~~l--------~i~~~tvs~~i~~Le~~G~i~r~--~~~~D~R~~~i~LT~~G~~~~~~~~  128 (171)
T Consensus         6 ~l~iL~~L~~~~~hGYei~k~i~~~~~~~~~~~~gtlYp~L~rLe~~glI~~~~~~~~~g~~rk~Y~iT~~G~~~L~~~~   85 (100)
T TIGR03433         6 DLLILRTLALGPLHGYGIAQRIQQRSEDVLQVEEGSLYPALHRLEKRGWIAAEWGESENNRRAKFYRLTAAGRKQLAAET   85 (100)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHH
T ss_conf             99999998249977999999999974997067877289999999988984888510578988638887888999999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999853
Q gi|254780351|r  129 QLYQRHIESIDKV  141 (171)
Q Consensus       129 ~~~~~~~~~l~~~  141 (171)
T Consensus        86 ~~w~~~~~~i~~~   98 (100)
T TIGR03433        86 ESWERLSAAIARV   98 (100)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999986