HHsearch alignment for GI: 254780351 and conserved domain: TIGR03433
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=97.81 E-value=0.00051 Score=45.73 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHH--------CCCCCHHHHHHHHHHHCCCEEEE--ECCCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 9999999321796889999985--------47710567999999977887886--3610071056445788999999999
Q gi|254780351|r 59 QALLLFNIGDLELTAGELRSRG--------YYLGSNVSYNLKKLIDLGFIKHQ--RSRIDKRSIRISLTQSGKEIAETIS 128 (171)
Q Consensus 59 q~~~L~~~~~~~~t~~eLa~~l--------~i~~~tvs~~i~~Le~~G~i~r~--~~~~D~R~~~i~LT~~G~~~~~~~~ 128 (171)
T Consensus 6 ~l~iL~~L~~~~~hGYei~k~i~~~~~~~~~~~~gtlYp~L~rLe~~glI~~~~~~~~~g~~rk~Y~iT~~G~~~L~~~~ 85 (100)
T TIGR03433 6 DLLILRTLALGPLHGYGIAQRIQQRSEDVLQVEEGSLYPALHRLEKRGWIAAEWGESENNRRAKFYRLTAAGRKQLAAET 85 (100)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 99999998249977999999999974997067877289999999988984888510578988638887888999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999853
Q gi|254780351|r 129 QLYQRHIESIDKV 141 (171)
Q Consensus 129 ~~~~~~~~~l~~~ 141 (171)
T Consensus 86 ~~w~~~~~~i~~~ 98 (100)
T TIGR03433 86 ESWERLSAAIARV 98 (100)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999986