HHsearch alignment for GI: 254780351 and conserved domain: pfam00126

>pfam00126 HTH_1 Bacterial regulatory helix-turn-helix protein, lysR family.

Probab=94.73  E-value=0.061  Score=32.41  Aligned_cols=54  Identities=17%  Similarity=0.197  Sum_probs=39.2

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC---CCEEEEECCCCCCEEEEEECHHHH
Q ss_conf             99999932179688999998547710567999999977---887886361007105644578899
Q gi|254780351|r   60 ALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDL---GFIKHQRSRIDKRSIRISLTQSGK  121 (171)
Q Consensus        60 ~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~---G~i~r~~~~~D~R~~~i~LT~~G~  121 (171)
T Consensus         4 l~~f~~v~~~g-s~~~AA~~l~isqs~vs~~i~~LE~~lg~~Lf~R~~-----~--~~~lT~~G~   60 (60)
T pfam00126         4 LRVFVAVAEEG-SFTAAAERLGLSQPAVSRQIKRLEEELGVPLFERTT-----R--GLRLTPAGE   60 (60)
T ss_pred             HHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECC-----C--CEEECCCCC
T ss_conf             99999999809-999999997989889999999999995997078889-----9--742893749