HHsearch alignment for GI: 254780351 and conserved domain: pfam01047
>pfam01047 MarR MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.
Probab=99.23 E-value=2.2e-11 Score=93.13 Aligned_cols=58 Identities=28% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf 99999999999321-79688999998547710567999999977887886361007105
Q gi|254780351|r 55 VNAVQALLLFNIGD-LELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSI 112 (171)
Q Consensus 55 l~~~q~~~L~~~~~-~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~ 112 (171)
T Consensus 1 lT~~Q~~vL~~l~~~~~~s~~~la~~~~~~~~~vs~~i~~Le~~glv~R~~~~~DrR~V 59 (59)
T pfam01047 1 LTLTQFHILRILYEHGPLTVSELAEKLGVDRSTVTRVLDRLEKKGLIERSRSPEDRREV 59 (59)
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 98999999999994699299999999885865499999999889798862799998819