HHsearch alignment for GI: 254780351 and conserved domain: pfam01131
>pfam01131 Topoisom_bac DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.
Probab=91.00 E-value=1.2 Score=24.09 Aligned_cols=76 Identities=13% Similarity=0.271 Sum_probs=52.4
Q ss_pred CCHHHHHHHH---CC-CCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 6889999985---47-7105679999999778878863610071056445788999999999999999999985349998
Q gi|254780351|r 71 LTAGELRSRG---YY-LGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146 (171)
Q Consensus 71 ~t~~eLa~~l---~i-~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~l~~~~~ls~ 146 (171)
T Consensus 315 yTe~sLi~~Me~~GIGtpATra~iI~~L~~R~Yi~~~k~------k~l~pT~~G~~li~~l~~-~~----~l-----~~~ 378 (403)
T pfam01131 315 YTEASLIKAMEKRGIGTPATRASIIETLLERGYVERKKN------KRLVPTDLGRALIDALPR-FP----DL-----VSP 378 (403)
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCC------CEEEECHHHHHHHHHHHC-CC----HH-----CCH
T ss_conf 589999999985799960238999999985894997489------778053789999998744-13----10-----697
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780351|r 147 DDFIAMNKLLQRLNRF 162 (171)
Q Consensus 147 ee~~~l~~~L~rler~ 162 (171)
T Consensus 379 ~~Ta~~E~~Ld~I~~G 394 (403)
T pfam01131 379 ELTARLEETLDEIARG 394 (403)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 7899999999999869