HHsearch alignment for GI: 254780351 and conserved domain: pfam01418

>pfam01418 HTH_6 Helix-turn-helix domain, rpiR family. This domain contains a helix-turn-helix motif. The best characterized member of this family is RpiR, a regulator of the expression of rpiB gene.

Probab=92.08  E-value=0.36  Score=27.45  Aligned_cols=48  Identities=19%  Similarity=0.052  Sum_probs=37.1

Q ss_pred             CCCHHHHHHHHHHHCC-----CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             9999999999993217-----96889999985477105679999999778878
Q gi|254780351|r   54 DVNAVQALLLFNIGDL-----ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIK  101 (171)
Q Consensus        54 ~l~~~q~~~L~~~~~~-----~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~  101 (171)
T Consensus        13 ~lt~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~atv~Rf~kklG~~Gf~e   65 (106)
T pfam01418        13 KLTKSEKKIADYILASPDNAIHLSIAELAKAAGVSEASVVRFCRKLGFSGFSD   65 (106)
T ss_pred             HCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
T ss_conf             64999999999999299999883399999896998999999999958998999