HHsearch alignment for GI: 254780351 and conserved domain: pfam01638

>pfam01638 HxlR HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.
Probab=98.16  E-value=2.2e-05  Score=54.49  Aligned_cols=74  Identities=18%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             HHHHHHHCCCCCHHHHHHHH-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf             99999321796889999985-477105679999999778878863610071056445788999999999999999
Q gi|254780351|r   61 LLLFNIGDLELTAGELRSRG-YYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRH  134 (171)
Q Consensus        61 ~~L~~~~~~~~t~~eLa~~l-~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~  134 (171)
T Consensus         9 ~Il~~L~~g~~rF~el~~~l~gis~~vLs~rLk~L~~~gli~r~~~~~~p~~~eY~LT~~G~~l~pvl~~l~~W~   83 (90)
T pfam01638         9 LILRELLDGPKRFSELKRALPGISQKMLTQRLRELEQDGIINREVYPEVPPKVEYSLTEKGRSLEPILQAMCDWG   83 (90)
T ss_pred             HHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             999999749988999997765769899999999999889937645699999368743907878999999999999