HHsearch alignment for GI: 254780351 and conserved domain: pfam01978
>pfam01978 TrmB Sugar-specific transcriptional regulator TrmB. One member of this family, TrmB, has been shown to be a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter in Thermococcus litoralis.
Probab=97.42 E-value=0.00061 Score=45.26 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHH-HHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf 579999999999-993217968899999854771056799999997788788636
Q gi|254780351|r 52 RSDVNAVQALLL-FNIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRS 105 (171)
Q Consensus 52 ~~~l~~~q~~~L-~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~ 105 (171)
T Consensus 3 ~~Gls~~E~~vY~~Ll~~g~~t~~eia~~~~i~r~~vY~~L~~L~~kGlv~~~~~ 57 (68)
T pfam01978 3 KLGLSEYEAKVYLALLKLGPATADEIAEESGVPRSKVYEVLRSLEKKGLVEREKG 57 (68)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 2398999999999999819988999999959889899999999998898898679