HHsearch alignment for GI: 254780351 and conserved domain: pfam03428
>pfam03428 RP-C Replication protein C N-terminal domain. Replication protein C is involved in the early stages of viral DNA replication.
Probab=95.36 E-value=0.24 Score=28.55 Aligned_cols=61 Identities=21% Similarity=0.177 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHH--------HC---CC---CCHHHHHHHH-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf 79999999999993--------21---79---6889999985-477105679999999778878863610071056
Q gi|254780351|r 53 SDVNAVQALLLFNI--------GD---LE---LTAGELRSRG-YYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIR 113 (171)
Q Consensus 53 ~~l~~~q~~~L~~~--------~~---~~---~t~~eLa~~l-~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~ 113 (171)
T Consensus 39 lgl~~r~l~vL~aLlsf~~~~d~~~~~~~iVfpSN~~La~r~~G~s~~tlrrhla~LveaGLi~rrDS~NgKRy~r 114 (177)
T pfam03428 39 LGISDRALAVLNALLSFYPEDELTGEGRLIVFPSNAQLSLRAHGMSESTLRRHLAALVDAGLIIRRDSPNGKRYAR 114 (177)
T ss_pred CCCCHHHHHHHHHHHHHCCHHHCCCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCE
T ss_conf 5998769999999996398844488988735028999999984998899999999999889745236999850162