HHsearch alignment for GI: 254780351 and conserved domain: pfam03965
>pfam03965 Pencillinase_R Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.
Probab=97.91 E-value=0.00072 Score=44.77 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHC-CCCCHHHHHHHHCC----CCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEE--ECHHH------H
Q ss_conf 99999999999321-79688999998547----710567999999977887886361007105644--57889------9
Q gi|254780351|r 55 VNAVQALLLFNIGD-LELTAGELRSRGYY----LGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRIS--LTQSG------K 121 (171)
Q Consensus 55 l~~~q~~~L~~~~~-~~~t~~eLa~~l~i----~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~--LT~~G------~ 121 (171)
T Consensus 1 Ls~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~KG~l~~~~~---gr~~~Y~p~v~~~~~~~~~~~ 77 (115)
T pfam03965 1 IGDAEWEVMRILWALGPATVKEVVEELPEPRDWAYSTVKTLLTRLVKKGLLSREKD---GRAYIYSPLVSREEAVASAVK 77 (115)
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEC---CCCEEEEECCCHHHHHHHHHH
T ss_conf 98899999999980799779999998514568857289999999997786268733---994798746889999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999-9999999998534999899999999999
Q gi|254780351|r 122 EIAETISQ-LYQRHIESIDKVGGLSVDDFIAMNKLLQ 157 (171)
Q Consensus 122 ~~~~~~~~-~~~~~~~~l~~~~~ls~ee~~~l~~~L~ 157 (171)
T Consensus 78 ~~~~~~f~gs~~~lv~~l~~~~~ls~~el~~L~~~i~ 114 (115)
T pfam03965 78 QLLDRLFGGSVGALVANFVEREKLSPDDIEELRELLE 114 (115)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9999997989999999998669999999999999870