HHsearch alignment for GI: 254780351 and conserved domain: pfam04297
>pfam04297 UPF0122 Putative helix-turn-helix protein, YlxM / p13 like. Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13. Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway.
Probab=91.45 E-value=0.45 Score=26.79 Aligned_cols=42 Identities=14% Similarity=-0.056 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999999993217968899999854771056799999997
Q gi|254780351|r 55 VNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKKLID 96 (171)
Q Consensus 55 l~~~q~~~L~~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~ 96 (171)
T Consensus 18 LT~KQ~~~~~lyy~eDlSL~EIAe~~~iSRQaV~D~ikR~~~ 59 (101)
T pfam04297 18 LTDKQKNYFELYYLDDLSLSEIAEEFNVSRQAVYDNIKRTEK 59 (101)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 659999999999876398999998819859999999999999