HHsearch alignment for GI: 254780351 and conserved domain: pfam08220
>pfam08220 HTH_DeoR DeoR-like helix-turn-helix domain.
Probab=95.25 E-value=0.05 Score=32.92 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=38.4
Q ss_pred HHHHHH-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 999932-179688999998547710567999999977887886361
Q gi|254780351|r 62 LLFNIG-DLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSR 106 (171)
Q Consensus 62 ~L~~~~-~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~ 106 (171)
T Consensus 5 Il~~l~~~~~v~i~~La~~f~VS~~TiRRDl~~L~~~g~i~R~~GG 50 (57)
T pfam08220 5 ILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGG 50 (57)
T ss_pred HHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9999998697979999999895999999969999988998997495