HHsearch alignment for GI: 254780351 and conserved domain: pfam08279
>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=94.13 E-value=0.13 Score=30.20 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=30.7
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCE
Q ss_conf 2179688999998547710567999999977887
Q gi|254780351|r 67 GDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFI 100 (171)
Q Consensus 67 ~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i 100 (171)
T Consensus 12 ~~~~vt~~~La~~l~VSr~TV~rdi~~L~~~G~~ 45 (55)
T pfam08279 12 AREPISGQELAEKLGVSRRTIRRDIKALEALGVP 45 (55)
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 6999189999999698899999999999988997