HHsearch alignment for GI: 254780351 and conserved domain: pfam08784
>pfam08784 RPA_C Replication protein A C terminal. This domain corresponds to the C terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints.
Probab=93.42 E-value=0.3 Score=27.95 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHC-----CCCCHHHHHHHH-CCCCCHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999999999999321-----796889999985-477105679999999778878863610
Q gi|254780351|r 54 DVNAVQALLLFNIGD-----LELTAGELRSRG-YYLGSNVSYNLKKLIDLGFIKHQRSRI 107 (171)
Q Consensus 54 ~l~~~q~~~L~~~~~-----~~~t~~eLa~~l-~i~~~tvs~~i~~Le~~G~i~r~~~~~ 107 (171)
T Consensus 44 ~ls~~~~~V~~~i~~~~~~~eG~h~~~l~~~l~~~~~~~i~~a~d~L~~eG~IYsTiDd~ 103 (103)
T pfam08784 44 GLTPLQDQVLNLIKQSCPGEEGVHVDELAAQLNGLPVNDIRQAVDFLSNEGHIYSTIDDD 103 (103)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf 878999999999995488988727999999982999999999999998488066426899