HHsearch alignment for GI: 254780351 and conserved domain: smart00346
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=97.00 E-value=0.0022 Score=41.62 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=43.1
Q ss_pred HHHHHH--CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHH
Q ss_conf 999932--179688999998547710567999999977887886361007105644578899999
Q gi|254780351|r 62 LLFNIG--DLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIA 124 (171)
Q Consensus 62 ~L~~~~--~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~ 124 (171)
T Consensus 10 IL~~l~~~~~~~sl~eia~~~~l~ksT~~RlL~tL~~~G~l~~~--~~~~~---Y~lG~~~~~lg 69 (91)
T smart00346 10 VLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQD--GQNGR---YRLGPKVLELG 69 (91)
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE--CCCCE---EEECHHHHHHH
T ss_conf 99999728999899999999890999999999999988996884--99997---75309999999