HHsearch alignment for GI: 254780351 and conserved domain: smart00347
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=99.75 E-value=1.8e-17 Score=132.26 Aligned_cols=96 Identities=26% Similarity=0.344 Sum_probs=89.1
Q ss_pred CCCCCHHHHHHHHHHHC-CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 57999999999999321-79688999998547710567999999977887886361007105644578899999999999
Q gi|254780351|r 52 RSDVNAVQALLLFNIGD-LELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQL 130 (171)
Q Consensus 52 ~~~l~~~q~~~L~~~~~-~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 130 (171)
T Consensus 5 ~~glt~~q~~vL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 84 (101)
T smart00347 5 PLGLTPTQFLVLRILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEELLEA 84 (101)
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf 13949999999999997699799999999896887999999999458938982189998858989998999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHH
Q ss_conf 9999999985349998999
Q gi|254780351|r 131 YQRHIESIDKVGGLSVDDF 149 (171)
Q Consensus 131 ~~~~~~~l~~~~~ls~ee~ 149 (171)
T Consensus 85 ~~~~~~~~--~~~ls~eEr 101 (101)
T smart00347 85 RHETLAEL--LAGLTAEEQ 101 (101)
T ss_pred HHHHHHHH--HHCCCHHHC
T ss_conf 99999999--848897669