HHsearch alignment for GI: 254780351 and conserved domain: smart00843

>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.

Probab=90.95  E-value=0.37  Score=27.32  Aligned_cols=49  Identities=12%  Similarity=0.085  Sum_probs=40.5

Q ss_pred             HHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCEEEE
Q ss_conf             93217968899999854771056799999997788788636100710564
Q gi|254780351|r   65 NIGDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRI  114 (171)
Q Consensus        65 ~~~~~~~t~~eLa~~l~i~~~tvs~~i~~Le~~G~i~r~~~~~D~R~~~i  114 (171)
T Consensus        14 V~~~~~~S~S~lQR~l~IGynRAariid~lE~~GiVsp-~~g~~~ReVL~   62 (63)
T smart00843       14 VIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGP-ANGSKPREVLV   62 (63)
T ss_pred             HHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC-CCCCCCCEEEC
T ss_conf             99808624899999972050699999999999858788-77999983424