RPSBLAST alignment of GI: 254780351 and protein with PDBid: 3eco

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} Length = 139

 Score = 55.3 bits (133), Expect = 7e-09
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 31  LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE---LTAGELRSRGYYLGSNV 87
           L   +   +      + E+     +   Q   L  +   +   LT  ++       G  V
Sbjct: 8   LFRMISHEMKQKADQKLEQFD---ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTV 64

Query: 88  SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147
           S  L+ L     I       D R   I LT SG ++ E  + ++    +++  V  LS +
Sbjct: 65  SNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTL--VSQLSEE 122

Query: 148 DFIAMNKLLQRLNR 161
           +   M   L ++  
Sbjct: 123 ENEQMKANLTKMLS 136