RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780351|ref|YP_003064764.1| MarR family transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] (171 letters) >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Length = 144 Score = 64.9 bits (158), Expect = 9e-12 Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 6/136 (4%) Query: 27 ECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGS 85 + LR + + R+L ++ EF+ + Q L L + + + ++ + Sbjct: 2 DILREIGMIARALDSISNIEFKELS---LTRGQYLYLVRVCENPGIIQEKIAELIKVDRT 58 Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145 + +K+L + GFI Q +K+ RI T+ GK + I + Q + + GLS Sbjct: 59 TAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHSNQVA--LQGLS 116 Query: 146 VDDFIAMNKLLQRLNR 161 + + L R+ + Sbjct: 117 EVEISQLADYLVRMRK 132 >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} Length = 189 Score = 63.0 bits (153), Expect = 3e-11 Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 29 LRLVERLHRSLLDVTR--DEFERQGRSDVNAVQALLLFNIGDL---ELTAGELRSRGYYL 83 L L+ + + +L +T + + + Q + + +I L E T + + Sbjct: 11 LFLMNQTYATLFTLTNKIQIEGDKYFGILTSRQYMTILSILHLPEEETTLNNIARKMGTS 70 Query: 84 GSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGG 143 N++ + L G++ S DKR+I + +T GK++ T S+ + + Sbjct: 71 KQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINFMADV--FHE 128 Query: 144 LSVDDFIAMNKLLQRLNRFWGD 165 + D+ + LL+++ RF G+ Sbjct: 129 FTKDELETLWSLLKKMYRFNGE 150 >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Length = 138 Score = 61.1 bits (148), Expect = 1e-10 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 9/133 (6%) Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87 L ++ R HR + G ++ Q L I + EL + + + Sbjct: 7 LSIILRSHRVFIG------RELGHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTI 60 Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 + L++L + GFI+ ++ ++R + +T+ G+EI I ++ +R + + + D Sbjct: 61 ARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVEERWEDLL--FRDFTED 118 Query: 148 DFIAMNKLLQRLN 160 + K+ +RL Sbjct: 119 ERKLFRKMCRRLA 131 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Length = 166 Score = 60.3 bits (146), Expect = 2e-10 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 10/135 (7%) Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE--LTAGELRSRGYYLGSN 86 L + R+ R+L+D R ++ + L NI L + +L + Sbjct: 31 LARLVRIWRALID------HRLKPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPS 84 Query: 87 VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146 + L +L D G I Q D+R+ RI LT+ + + + ++ + I + G+S Sbjct: 85 LVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEI--LAGISS 142 Query: 147 DDFIAMNKLLQRLNR 161 ++ + KL+ +L Sbjct: 143 EEIELLIKLIAKLEH 157 >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Length = 143 Score = 60.1 bits (146), Expect = 3e-10 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 6/144 (4%) Query: 19 NDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELR 77 N + G Y E V + + V Q +L I E ++ E+ Sbjct: 2 NAMRGYYDEISFDVNTTAKKMHLFLMRSIASYD---VTPEQWSVLEGIEANEPISQKEIA 58 Query: 78 SRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIES 137 V+ + L+ I + S D+R +SLT G++ + + + E Sbjct: 59 LWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDIVEASCEK 118 Query: 138 IDKVGGLSVDDFIAMNKLLQRLNR 161 + G++ D +L+ ++ Sbjct: 119 M--FAGVTRTDLEQFTAILKNIST 140 >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Length = 138 Score = 59.1 bits (143), Expect = 6e-10 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87 + +V + LL+ E D+ A Q +L +I +T EL+ + Sbjct: 12 IHMVNQKKDRLLN------EYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGAL 65 Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 + L +L+ G+++ + DKR + + LT G I E QL + + + L+ D Sbjct: 66 TRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQ-ELTKNLTAD 124 Query: 148 DFIAMNKLLQRL 159 + + LL+++ Sbjct: 125 EVATLEYLLKKV 136 >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Length = 145 Score = 58.8 bits (142), Expect = 6e-10 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 4/131 (3%) Query: 33 ERLHRSLLDVTRDEFERQGRS-DVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNVSYN 90 ER+ R + + + E + R + Q +L I GEL S V+ Sbjct: 8 ERILREICFMVKVEGRKVLRDFGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGL 67 Query: 91 LKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFI 150 +K+L G++ D+R+ + +T+ G+E+ E + + + IE I L + Sbjct: 68 VKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKI--TSDLGKEKSS 125 Query: 151 AMNKLLQRLNR 161 + L+ L Sbjct: 126 KILDYLKELKG 136 >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Length = 148 Score = 58.3 bits (141), Expect = 1e-09 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 9/133 (6%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88 L +L +F + + ++ + + ++ + VS Sbjct: 19 MLANKLMLKSSTAYTQKF------GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVS 72 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 +KKL + +I+ DKR+ I+LT+ G+E+ E S + + + + Sbjct: 73 RTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAIEREKQL--LEEFEEAE 130 Query: 149 FIAMNKLLQRLNR 161 + LL++L Sbjct: 131 KDQLFILLKKLRN 143 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Length = 161 Score = 57.8 bits (139), Expect = 1e-09 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 6/136 (4%) Query: 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVSY 89 L+ R+ + + + LL ++ LT G+L + G S S Sbjct: 30 LLTRITHIWSSELNQALASEK---LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSR 86 Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149 + +L+D G S D+R + LT+ GK+ IS L + VG + D Sbjct: 87 TVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAEL--VGNVDPDKL 144 Query: 150 IAMNKLLQRLNRFWGD 165 ++L + + D Sbjct: 145 QTCIEVLGEILKGKTD 160 >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} Length = 148 Score = 57.7 bits (139), Expect = 1e-09 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 8/135 (5%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNI---GDLELTAGELRSRGYYLGSN 86 L+ + L G +N+ Q ++ I + + +L G++ Sbjct: 17 YLIRSIGMKLKTSADARLAELG---LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGAS 73 Query: 87 VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146 ++ L+ L G+I+ + + R I + G + E + ++ ESI GL+ Sbjct: 74 ITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESI--TKGLTK 131 Query: 147 DDFIAMNKLLQRLNR 161 D+ + +L ++NR Sbjct: 132 DEQKQLMSILIKVNR 146 >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Length = 142 Score = 57.0 bits (137), Expect = 2e-09 Identities = 21/135 (15%), Positives = 60/135 (44%), Gaps = 7/135 (5%) Query: 28 CLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSN 86 L L+ + + + R + G + Q ++ + E+ + +L ++ L + Sbjct: 11 TLTLL-QAREAAMSFFRPSLNQHG---LTEQQWRVIRILRQQGEMESYQLANQACILRPS 66 Query: 87 VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146 ++ L +L G ++ ++ D+R + ++LT+ G++ ++S +++ + I Sbjct: 67 MTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRI--QERFGE 124 Query: 147 DDFIAMNKLLQRLNR 161 + + +LL L + Sbjct: 125 EKLAQLLELLNELKK 139 >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Length = 142 Score = 56.1 bits (135), Expect = 4e-09 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Query: 30 RLVERLHRSLLDVTRDEFER-QGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87 +L L+ + V R + + ++ Q L+L + D + ++ + V Sbjct: 9 QLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTV 68 Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 S LK++ + IK +RS +D+R + I LT + I +S + + LS D Sbjct: 69 SPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASAS----SLSQD 124 Query: 148 DFIAMNKLLQRL 159 + +N+LL ++ Sbjct: 125 EVKELNRLLGKV 136 >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Length = 153 Score = 56.1 bits (135), Expect = 4e-09 Identities = 24/133 (18%), Positives = 60/133 (45%), Gaps = 5/133 (3%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88 +L L+ + L + + D+ Q L++ + + + + E+ R Y + ++ Sbjct: 20 QLSFALYSANLAMHKLYRGLLKALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLT 79 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 LK+L G + R+ D+R + I+LT++G+ + + ++ + S+D+ Sbjct: 80 PLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAGAVPEQVFCAS----ACSLDE 135 Query: 149 FIAMNKLLQRLNR 161 + + L++L Sbjct: 136 LRQLKQELEKLRS 148 >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} Length = 139 Score = 55.3 bits (133), Expect = 7e-09 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE---LTAGELRSRGYYLGSNV 87 L + + + E+ + Q L + + LT ++ G V Sbjct: 8 LFRMISHEMKQKADQKLEQFD---ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTV 64 Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 S L+ L I D R I LT SG ++ E + ++ +++ V LS + Sbjct: 65 SNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTL--VSQLSEE 122 Query: 148 DFIAMNKLLQRLNR 161 + M L ++ Sbjct: 123 ENEQMKANLTKMLS 136 >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A Length = 140 Score = 55.3 bits (133), Expect = 7e-09 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 5/131 (3%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88 +L + S ++ + D+ ++L I + E L +L R + ++ Sbjct: 9 QLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLT 68 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 LKKL ++ R D+R+++ISLT+ GK I ++++ + +S + Sbjct: 69 PLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEF----NISERE 124 Query: 149 FIAMNKLLQRL 159 + L+ Sbjct: 125 ASDIINNLRNF 135 >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} Length = 152 Score = 54.4 bits (130), Expect = 1e-08 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 6/140 (4%) Query: 27 ECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGS 85 + ++ L R++ R+G V Q +L + TA +L + Sbjct: 13 QAVQATRPLLRNITAAVERGTLREG---VTVGQRAILEGLSLTPGATAPQLGAALQMKRQ 69 Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145 +S L+++ G I+ + + RS R LT G+ I I + G S Sbjct: 70 YISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRADEMAKLALF--SEGFS 127 Query: 146 VDDFIAMNKLLQRLNRFWGD 165 + A +K+ L RF+ D Sbjct: 128 SVELTAYHKVQLALTRFFAD 147 >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} Length = 150 Score = 54.2 bits (130), Expect = 2e-08 Identities = 17/131 (12%), Positives = 40/131 (30%), Gaps = 7/131 (5%) Query: 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE--LTAGELRSRGYYLGSNVS 88 L+ R+ +L G + +L + + + + S + Sbjct: 16 LLSRVGGMVLGAVNKALVPTG---LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIV 72 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 + +L + G + D+R+ I+ T+ G+ + + G+ Sbjct: 73 GLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDAAHGRY--FEGIPDTV 130 Query: 149 FIAMNKLLQRL 159 M LQ + Sbjct: 131 VNQMRDTLQSI 141 >3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Length = 160 Score = 53.9 bits (129), Expect = 2e-08 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Query: 33 ERLHRSLLDVTR---DEFERQ--GRSDVNAVQALLLFNIGDLE--LTAGELRSRGYYLGS 85 RL ++L + + RQ + ++ + + + L+ G+L Sbjct: 18 TRLWLNILRLHGLVFGDLNRQLLDETGLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNG 77 Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145 NVS + +LI G + S D+RS LT +G + S+ + R + + + +S Sbjct: 78 NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASEAHNRILAEL--LRAVS 135 Query: 146 VDDFIAMNKLLQRLNR 161 D + + L+ + Sbjct: 136 DQDMVEASAALRGILE 151 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Length = 140 Score = 53.5 bits (128), Expect = 2e-08 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 7/131 (5%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNVS 88 ++ + ++ F + + Q L +G+ +L + + Sbjct: 15 FILRQANQRY----AALFANGIGNGLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIK 70 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 +++L G I+ D R + +SL+ +G+ E + + LS+ + Sbjct: 71 GVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQA--LAPLSLQE 128 Query: 149 FIAMNKLLQRL 159 + LL RL Sbjct: 129 QETLRGLLARL 139 >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Length = 146 Score = 53.5 bits (128), Expect = 2e-08 Identities = 28/133 (21%), Positives = 65/133 (48%), Gaps = 2/133 (1%) Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVS 88 ++++ + + ++R+ R G +++ + L+L D T L +R + S ++ Sbjct: 9 IQIMSTIAKIYRAMSRELNRRLGELNLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAIT 68 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 ++ KL ++G + R R D+R I I +T+ G E ++Y++ + G LS D+ Sbjct: 69 ASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIEIYKKLANEV--TGDLSEDE 126 Query: 149 FIAMNKLLQRLNR 161 I + + ++ + Sbjct: 127 VILVLDKISKILK 139 >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A Length = 142 Score = 52.7 bits (126), Expect = 4e-08 Identities = 21/132 (15%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87 + + + + + + E + Q R D+ +L I + L +L + + + Sbjct: 10 MPALMAVFQHVRTRIQSELDCQ-RLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALI 68 Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 + +++L ++ +R+ D+RS ++ LT G I + R + + L+ Sbjct: 69 TRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELIMSRVHDEL--FAPLTPV 126 Query: 148 DFIAMNKLLQRL 159 + + LL + Sbjct: 127 EQATLVHLLDQC 138 >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Length = 155 Score = 52.7 bits (126), Expect = 4e-08 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 24 LYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYY 82 L + ++ L + + + E+QG V Q +L ++ L E+ R Sbjct: 7 LMSDIQLSLQALFQKIQPEMLESMEKQG---VTPAQLFVLASLKKHGSLKVSEIAERMEV 63 Query: 83 LGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVG 142 S V+ +L I + D+R I +SLT G E + + + + Sbjct: 64 KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAGRKAIMARY--LS 121 Query: 143 GLSVDDFIAMNKLLQRLNR 161 L+ ++ + + +L + Sbjct: 122 FLTEEEMLQAAHITAKLAQ 140 >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A Length = 151 Score = 52.1 bits (125), Expect = 6e-08 Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 10/135 (7%) Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVS 88 + V L LL + E+ ++A Q+ +L + LT G++ + + VS Sbjct: 16 INDVNTLTAKLLKDLQTEY------GISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVS 69 Query: 89 YNLKKLIDLGFIKHQR--SRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSV 146 +KKL++ +K ++ S D+R I L+ GK+ + + + Sbjct: 70 RRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDM--TSDFDS 127 Query: 147 DDFIAMNKLLQRLNR 161 + + ++L+ ++ Sbjct: 128 KEIEKVRQVLEIIDY 142 >2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} Length = 168 Score = 51.7 bits (123), Expect = 9e-08 Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 4/141 (2%) Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNV 87 + R L+ ++ + ++ Q L + + + L + S Sbjct: 18 TDALLTASRLLVAISAHSIAQVD-ENITIPQFRTLVILSNHGPINLATLATLLGVQPSAT 76 Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 + +L+ I +R + +LT+ G+++ +++ + I I V ++ Sbjct: 77 GRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARI--VEQMAPA 134 Query: 148 DFIAMNKLLQRLNRFWGDQIA 168 + + + L G+ A Sbjct: 135 ERHGLVRALTAFTEAGGEPDA 155 >3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} Length = 142 Score = 51.2 bits (122), Expect = 1e-07 Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88 L+ RL + ++ ++ G ++ + +L + L L+ R + V+ Sbjct: 7 DLLYRLKVADETISNLFEKQLG---ISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVT 63 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 +LK L + G+I +R+ ++R + + T+ +E T + + I++ L+V++ Sbjct: 64 RHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKT-SMNQILTVEE 122 Query: 149 FIAMNKLLQRL 159 L +L Sbjct: 123 SEQFLATLDKL 133 >1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Length = 147 Score = 51.1 bits (122), Expect = 1e-07 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 5/133 (3%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGD-LELTAGELRSRGYYLGSNVS 88 +L L+ S ++T+ + ++ Q L L + + LT ++ + Y ++ Sbjct: 13 QLSFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLT 72 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 LK++ G I +RS D+RS+ ISLT+ G + E + I + S +D Sbjct: 73 PMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGT----ILGLSKQSGED 128 Query: 149 FIAMNKLLQRLNR 161 + L L Sbjct: 129 LKQLKSALYTLLE 141 >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} Length = 139 Score = 50.8 bits (121), Expect = 2e-07 Identities = 19/136 (13%), Positives = 58/136 (42%), Gaps = 6/136 (4%) Query: 27 ECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGS 85 E + ++ L E+ ++ VQ ++ + +++ +L + S Sbjct: 6 ELYGNIRDVYHLLQKNLDKAIEQYD---ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPS 62 Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145 N++ ++++ G++ +++ D+R + LT+ G+E + + Y ++ G + Sbjct: 63 NMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQYSDFLKEN--CGCFT 120 Query: 146 VDDFIAMNKLLQRLNR 161 ++ + LL + + Sbjct: 121 KEEEGILEDLLLKWKK 136 >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Length = 162 Score = 50.2 bits (119), Expect = 2e-07 Identities = 24/133 (18%), Positives = 60/133 (45%), Gaps = 9/133 (6%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVS 88 L R+ ++ V D + + + ++ + +A E+ R VS Sbjct: 28 VLSNRISGNIAKVYGDRY------GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVS 81 Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD 148 + +L++ GFI+ + D+R ++L+ +G+++ ET++ L + + + S ++ Sbjct: 82 RAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVNEMEQRL--MSVFSAEE 139 Query: 149 FIAMNKLLQRLNR 161 + +L+ RL + Sbjct: 140 QQTLERLIDRLAK 152 >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Length = 146 Score = 50.0 bits (119), Expect = 2e-07 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 7/134 (5%) Query: 30 RLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE--LTAGELRSRGYYLGSNV 87 L+ + R+ G ++ + L+L ++ T EL G + Sbjct: 13 TLLAQTSRAWRAELDRRLSHLG---LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTL 69 Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 + L L G ++ D+R+ I LT + I + + + G+ Sbjct: 70 ARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDV--LTGIDES 127 Query: 148 DFIAMNKLLQRLNR 161 + ++L R+ Sbjct: 128 EQALCQQVLLRILA 141 >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Length = 152 Score = 50.1 bits (119), Expect = 2e-07 Identities = 21/135 (15%), Positives = 60/135 (44%), Gaps = 4/135 (2%) Query: 31 LVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYN 90 ++E + ++++ + + G + + + + D LT ++ NVS + Sbjct: 3 IMEEAKKLIIELFSELAKIHGLN-KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMS 61 Query: 91 LKKLIDLGFIKHQRSRIDKRSIRISLTQSGK--EIAETISQLYQRHIESIDKV-GGLSVD 147 LKKL +LGF++ + ++++ ++ +IA+ L + E + K+ + + Sbjct: 62 LKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKCNEE 121 Query: 148 DFIAMNKLLQRLNRF 162 + + + ++ + R Sbjct: 122 EKEFIKQKIKGIERM 136 >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Length = 144 Score = 49.7 bits (118), Expect = 3e-07 Identities = 17/137 (12%), Positives = 61/137 (44%), Gaps = 6/137 (4%) Query: 26 VECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGS 85 ++ + + +++R + + + +++ + +L + + L +R + S Sbjct: 8 LQLMNTIAKIYRGSIKEFNNRLGK--LMNLSYLDFSILKATSEEPRSMVYLANRYFVTQS 65 Query: 86 NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLS 145 ++ + KL G ++ R D+R + + +T G+++ +++ + + + + + Sbjct: 66 AITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLRNLVNEM--LSDVE 123 Query: 146 VDDFI--AMNKLLQRLN 160 + + +NK+L R+ Sbjct: 124 NVEELLEGLNKILSRIG 140 >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Length = 207 Score = 48.9 bits (116), Expect = 5e-07 Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 32 VERLHRSLLDVTRDEFERQGRS-DVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNVSY 89 + +L ++L ++++ + D+N + +L+ L + E+ G S Sbjct: 22 MAQLSKALWKSIEKDWQQWLKPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFN 81 Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESI 138 KKL + G+++ + DKR+ + LT+ G E+ ++ + + ++ Sbjct: 82 FSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPTRNAV 130 >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Length = 150 Score = 49.0 bits (116), Expect = 6e-07 Identities = 27/132 (20%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 32 VERLHRSLLDVTRDEFERQGRS-DVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNVSY 89 +E+L R + + + + Q + L + + +LT GEL ++ Y S + Sbjct: 16 LEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTD 75 Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149 + ++ G + R D+R +RI L + G+ I E + + QR + ++ + S ++ Sbjct: 76 LVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEKRQRDLANV--LESFSDEEI 133 Query: 150 IAMNKLLQRLNR 161 + + L++L++ Sbjct: 134 VVFERCLRKLHQ 145 >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Length = 145 Score = 46.6 bits (110), Expect = 3e-06 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 3/134 (2%) Query: 29 LRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGSNV 87 + +++L + + + G+ D+N +L+ + T + + V Sbjct: 3 MNQLDQLGTRINLICNVFDKWIGQQDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTV 62 Query: 88 SYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 S K L G I+ Q D+R +SLT++GK A +++ Q + + Sbjct: 63 SGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQEFSDKV--FATFGDK 120 Query: 148 DFIAMNKLLQRLNR 161 + L L Sbjct: 121 RTTRLFADLDALAE 134 >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Length = 250 Score = 45.7 bits (108), Expect = 6e-06 Identities = 19/107 (17%), Positives = 45/107 (42%) Query: 34 RLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLELTAGELRSRGYYLGSNVSYNLKK 93 + + + + + LF+ + L ++ S Y S++ ++K Sbjct: 14 IIEAYMFRFKKKVKPEVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKV 73 Query: 94 LIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDK 140 L+ +I RS+ID+R+ IS+++ +E L+ + I+ + Sbjct: 74 LVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFDQIIKQFNL 120 Score = 41.8 bits (98), Expect = 7e-05 Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129 + +L ++ L L G++ +RS D+R I I + + ++ AE + Sbjct: 174 IVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLA 233 Query: 130 LYQRHIESID 139 + + D Sbjct: 234 QVNQLLADKD 243 >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Length = 154 Score = 37.5 bits (86), Expect = 0.002 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 27 ECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE-LTAGELRSRGYYLGS 85 E L+ + R G + Q ++ I ++ +L R GS Sbjct: 14 ELLKTYWSIQRISAGYADQNAASLG---LTIQQLAMINVIYSTPGISVADLTKRLIITGS 70 Query: 86 NVSYNLKKLIDLGFIKHQR--SRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGG 143 + + N+ LI LG + D + + L++ G+++++ + + + Sbjct: 71 SAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFEN 130 Query: 144 LSVDDFIAMNKLLQRLNRF 162 L+ ++ + +L +++ Sbjct: 131 LTENEIEELIRLNKKVETL 149 >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Length = 127 Score = 36.2 bits (83), Expect = 0.004 Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 14/121 (11%) Query: 19 NDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFNIGDLE---LTAGE 75 ND L + ++L + ++ + +L I + + + Sbjct: 10 NDCFELLS-MVTYADKLKSLIKK----------EFSISFEEFAVLTYISENKEKEYYLKD 58 Query: 76 LRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHI 135 + + Y V +K L + +R+ D+R++ I + ++ E++ + I Sbjct: 59 IINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRI 118 Query: 136 E 136 Sbjct: 119 T 119 >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 Length = 230 Score = 36.1 bits (83), Expect = 0.004 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129 LT+ +L + S + L G+I KR +++T+ G ++ T Sbjct: 27 YLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV---TKRGQILNITEKGLDVLYTEFA 83 Query: 130 LYQR 133 R Sbjct: 84 DLSR 87 >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Length = 487 Score = 34.9 bits (79), Expect = 0.010 Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 16/129 (12%) Query: 6 QSKIISDTDSAIGNDISGLYVECLRLVERLHRSLLDVTRDEFERQGRSDVNAVQALLLFN 65 Q+ ++ S I NDI+ L + V++ R + ++N + +L + Sbjct: 365 QTNAAAEFMSKI-NDINDLVNATFQ-VKKFFRDTKK----------KFNLNYEEIYILNH 412 Query: 66 I---GDLELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKE 122 I E+++ E+ + ++ L+KL DL + +RS D+R++ + +T + K Sbjct: 413 ILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKA 472 Query: 123 -IAETISQL 130 I + IS+L Sbjct: 473 NIQKLISEL 481 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 34.1 bits (78), Expect = 0.016 Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 65/193 (33%) Query: 26 VECLRLV-ERLHRSLLDVTRDEFER--QGRSDVNAVQ------ALLL--FNIG------- 67 +E + LV + +++F + ++ A A L+ F +G Sbjct: 16 LEHVLLVPTASF-FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF-LGYVSSLVE 73 Query: 68 ---------DLELTAGELRSRGYYLGSN----VSYNLKKLIDLGFIKHQ---------RS 105 L L E + YL N ++ L + D +K + R Sbjct: 74 PSKVGQFDQVLNLCLTEFENC--YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131 Query: 106 RIDKRSIRISLTQSG--KEIAETISQLY-----QRHIESIDKVGGLS---------VDDF 149 + + S S + + E +QL Q + + D L V D Sbjct: 132 MAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQGNTD--DYFEELRDLYQTYHVLVGDL 187 Query: 150 IA-MNKLLQRLNR 161 I + L L R Sbjct: 188 IKFSAETLSELIR 200 Score = 33.4 bits (76), Expect = 0.025 Identities = 46/257 (17%), Positives = 77/257 (29%), Gaps = 119/257 (46%) Query: 6 QSKIISDTDSAI----GNDISGLYVECLR--------LVERLHRS----LLDVTRDEFER 49 ++++ AI GN Y E LR LV L + L ++ R + Sbjct: 153 NAQLV-----AIFGGQGN-TDD-YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205 Query: 50 -----QGRSDVNA----------VQALL-------LFNIGDLEL------------TAGE 75 QG ++ LL L IG ++L T GE Sbjct: 206 EKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFTPGE 262 Query: 76 LRSR-----GYYLG-----------SNVSY--NLKKLIDL----GFIKHQ---RSRIDKR 110 LRS G+ G S S+ +++K I + G ++ + Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT----- 317 Query: 111 SIRISLTQSGKEIAE------------TISQLYQRHIESIDKVGGLSVDDFIAM---N-- 153 S+ S+ + E E T Q+ Q ++ + L + + N Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSH--LPAGKQVEISLVNGA 374 Query: 154 ---------KLLQRLNR 161 + L LN Sbjct: 375 KNLVVSGPPQSLYGLNL 391 >2vtv_A PHB depolymerase PHAZ7; hydrolase; 1.9A {Paucimonas lemoignei} Length = 342 Score = 33.1 bits (75), Expect = 0.036 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 50 QGRSDVNAVQALLLFNIGDL-ELTAGELRSRGYYLGSNVS-YNLKKLIDLGFIKHQRSRI 107 D A A N+ + AG ++ Y ++ YN + H R++ Sbjct: 252 WAGCDSAAKFASTTSNVKAQINVGAGSNATQADYDWADGMPYNAGGGDTTNGVGHFRTKT 311 Query: 108 DKRSI 112 + +I Sbjct: 312 NTGAI 316 >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} Length = 244 Score = 32.3 bits (73), Expect = 0.052 Identities = 6/64 (9%), Positives = 18/64 (28%), Gaps = 5/64 (7%) Query: 71 LTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQL 130 EL + + +L G + + ++ L + G + + + Sbjct: 167 TGITELAKMLDKSEKTLINKIAELKKFGILTQ-----KGKDRKVELNELGLNVIKLNKSV 221 Query: 131 YQRH 134 + Sbjct: 222 IESS 225 >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D Length = 142 Score = 32.2 bits (73), Expect = 0.070 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 9/67 (13%) Query: 85 SNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGL 144 S+V+ ++KL ++ +++ R + LT GK+I + + RH + + Sbjct: 37 SSVTKMVQKLDKDEYLIYEKYR------GLVLTSKGKKIGKRL---VYRHELLEQFLRII 87 Query: 145 SVDDFIA 151 VD+ Sbjct: 88 GVDEEKI 94 >3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* Length = 103 Score = 30.9 bits (70), Expect = 0.15 Identities = 9/54 (16%), Positives = 27/54 (50%) Query: 94 LIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVD 147 +++LG I + +R++LT G + +++ + ++ + + V + V+ Sbjct: 27 VVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVE 80 >2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} Length = 118 Score = 29.9 bits (67), Expect = 0.33 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129 G+L + SNVS +L L G + + + R +R +L +A + + Sbjct: 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVV---ATYEGRQVRYALA--DSHLARALGE 88 Query: 130 LYQ 132 L Q Sbjct: 89 LVQ 91 >1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Length = 122 Score = 29.8 bits (67), Expect = 0.33 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 9/72 (12%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129 EL ++ + +N S++L+ L G + R + + SL E I Q Sbjct: 56 ELCVCDIANILGVTIANASHHLRTLYKQGVVN---FRKEGKLALYSLGD------EHIRQ 106 Query: 130 LYQRHIESIDKV 141 + + +V Sbjct: 107 IMMIALAHKKEV 118 >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A Length = 214 Score = 29.3 bits (65), Expect = 0.41 Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 85 SNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGL 144 V+ +KKL+ + + LT G ++ + + ++ + G Sbjct: 35 PAVTEMMKKLLAEELLIKDKKA------GYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGY 88 Query: 145 SVDD 148 + ++ Sbjct: 89 TTEE 92 >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Length = 108 Score = 29.4 bits (66), Expect = 0.42 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 4/68 (5%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSG-KEIAETIS 128 E + + + S NL+ L G ++ +R + + + + Sbjct: 38 ERAVEAIATATGMNLTTASANLQALKSGGLVE---ARREGTRQYYRIAGEDVARLFALVQ 94 Query: 129 QLYQRHIE 136 + H+E Sbjct: 95 VVADEHLE 102 >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Length = 106 Score = 29.4 bits (66), Expect = 0.43 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129 E + G + + SNVS+ LK L + +K ++ +S+ SL +A + Q Sbjct: 39 EASVGHISHQLNLSQSNVSHQLKLLKSVHLVK---AKRQGQSMIYSL--DDIHVATMLKQ 93 Query: 130 LYQR 133 Sbjct: 94 AIHH 97 >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A Length = 230 Score = 28.8 bits (64), Expect = 0.65 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 9/50 (18%) Query: 85 SNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRH 134 VS + ++ G ++ R + LT+ G+ +A + ++H Sbjct: 39 PTVSQTVSRMERDGLLRVAGDR------HLELTEKGRALAI---AVMRKH 79 >1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Length = 167 Score = 28.3 bits (63), Expect = 0.87 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 99 FIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQR 158 F + +D + ++ +LT G + Q + G ++ DD+IA L+ Sbjct: 81 FDSDRSGTVDPQELQKALTTMGFRLNP---QTVNSIAKRYSTSGKITFDDYIACCVKLRA 137 Query: 159 LNR 161 L Sbjct: 138 LTD 140 >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244 Score = 28.1 bits (62), Expect = 0.92 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 17/72 (23%) Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149 + K + K SL +G + +S + F Sbjct: 190 KYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDDLNN-----------------ISFEQF 232 Query: 150 IAMNKLLQRLNR 161 +++ + N+ Sbjct: 233 LSLFNSYKLFNK 244 >1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} SCOP: a.4.5.69 Length = 131 Score = 28.1 bits (62), Expect = 0.99 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 4/84 (4%) Query: 61 LLLFNIGDLELTAGELRSRGYYLGSNVSYN-LKKLIDLGFIKHQRSRIDKRSIRISLTQS 119 L+L + D +LR + + L+ L GF+ + + SLT Sbjct: 39 LILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPL 98 Query: 120 GKEIAETISQLYQ---RHIESIDK 140 G+++++ ++ L ++ + Sbjct: 99 GEQVSDXVAALADWIELNLPQVLA 122 >1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle protein; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* 3i5g_A 3i5f_A ... Length = 837 Score = 28.1 bits (62), Expect = 1.1 Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 16/93 (17%) Query: 86 NVSYNLKKLI-----DLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDK 140 +++ KK GF + I + + + + +K Sbjct: 25 TAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEK 84 Query: 141 VGGLSVDDFIAMNKL-----LQRL-NRFWGDQI 167 ++D M L L L +R+ I Sbjct: 85 -----LEDMANMTYLNEASVLYNLRSRYTSGLI 112 >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} Length = 151 Score = 28.0 bits (62), Expect = 1.2 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSG-KEIAETIS 128 E T L + S +S +L+ L + G + R D R L G ++ Sbjct: 71 EQTVNNLAAHFPASRSAISQHLRVLTEAGLV---TPRKDGRFRYYRLDPQGLAQLRALFD 127 Query: 129 QLYQRHIESID 139 + ++ + Sbjct: 128 SFWIDELDRLV 138 >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A Length = 192 Score = 27.7 bits (61), Expect = 1.5 Identities = 13/105 (12%), Positives = 40/105 (38%), Gaps = 13/105 (12%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRS-----------RIDKRSIRISLTQ 118 E+T +L + ++++KL + G ++ +R+ I+L Sbjct: 33 EMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYINLYL 92 Query: 119 SGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQRLNRFW 163 +E+ + I+ ++G ++ + ++ R+++ Sbjct: 93 GDEELRYIARSRLKTKIDIFKRLGYQFEEN--ELLNIMDRMSQKE 135 >1br2_A Myosin; muscle protein; HET: ADP; 2.90A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1br1_A* 1br4_A* Length = 791 Score = 27.4 bits (60), Expect = 1.6 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 16/93 (17%) Query: 86 NVSYNLKKLI-----DLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDK 140 ++ KKL+ GF + + L ++GK++ + + + + K Sbjct: 25 QADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSK 84 Query: 141 VGGLSVDDFIAMNKL-----LQRL-NRFWGDQI 167 V+D + L L L R++ I Sbjct: 85 -----VEDMAELTCLNEASVLHNLRERYFSGLI 112 >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus, viral protein; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Length = 99 Score = 27.3 bits (60), Expect = 1.7 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 11/53 (20%) Query: 89 YNLKK-LIDLGFIKHQRSRIDKRSIRISLTQSGKEIA-------ETISQLYQR 133 Y+ KK LI GF+K ++ R +K R+ LT+ GK A ET Q+ +R Sbjct: 44 YDAKKFLIQEGFVKERQERGEK---RLYLTEKGKLFAISLKTAIETYKQIKKR 93 >2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} Length = 561 Score = 27.2 bits (59), Expect = 1.9 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 103 QRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDD-FIAMNKLLQRLNR 161 + ID + I S+ +G ++ E+I+ ++ + L++ + + K+ + Sbjct: 71 MATGIDAKEIEESVKDTG-DLGESIALAVKKKKQKSFFSQPLTIKRVYQTLVKVAETTGE 129 Query: 162 FWGDQIAYRL 171 D+ L Sbjct: 130 GSQDKKVKYL 139 >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A Length = 122 Score = 27.1 bits (60), Expect = 2.2 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 9/70 (12%) Query: 70 ELTAGELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQ 129 EL G+L S VS+ L+ L +L + R R + L I Sbjct: 59 ELCVGDLAQAIGVSESAVSHQLRSLRNLRLVS---YRKQGRHVYYQLQD------HHIVA 109 Query: 130 LYQRHIESID 139 LYQ ++ + Sbjct: 110 LYQNALDHLQ 119 >1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Score = 26.8 bits (58), Expect = 2.4 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 11/62 (17%) Query: 74 GELRSRGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQL--Y 131 G++ + S L K + L I + S I + + K + + + Y Sbjct: 313 GKVTTGTQ------SPTLGKNVGLALIDSETSEIGT---VVDVEIRKKLVKAKVVKTPFY 363 Query: 132 QR 133 +R Sbjct: 364 KR 365 >1ig8_A Hexokinase PII, hexokinase B; mixed alpha beta, two domains, cleft, transferase; 2.20A {Saccharomyces cerevisiae} SCOP: c.55.1.3 c.55.1.3 PDB: 3b8a_X* Length = 486 Score = 26.9 bits (59), Expect = 2.6 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 75 ELRSRGYYLGSNVSYNLKKLIDLGFIKHQR--SRIDK 109 E S GYYLG + L + GFI + S+ DK Sbjct: 302 EKMSSGYYLGEILRLALMDMYKQGFIFKNQDLSKFDK 338 >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A Length = 123 Score = 26.8 bits (59), Expect = 2.7 Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 20/104 (19%) Query: 70 ELTAGELRSRGYYLGSNVSYN-----LKKLIDLGFIKHQRS----------RIDKRSIRI 114 +A + + + S + +L GFI ++ + Sbjct: 24 YASANNIIEE-IQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKT 82 Query: 115 SLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDFIAMNKLLQR 158 S K + L +E LS D+ + +L + Sbjct: 83 SKNFINKVYKGGFNSLVLNFVEKE----DLSQDEIEELRNILNK 122 >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295 Score = 26.5 bits (58), Expect = 2.8 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 20/85 (23%) Query: 89 YNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGG----- 143 + F R +S+R +L S KE+ ++ + + ++ Sbjct: 213 NFFDDFLRAIF--QHR-N---KSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLI 266 Query: 144 ------LSVDDFIAMNKLLQRLNRF 162 LSV D + L RF Sbjct: 267 NEKVFKLSVKDIV---NLSNEFYRF 288 >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 Length = 107 Score = 26.1 bits (57), Expect = 4.0 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%) Query: 87 VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQ---RHIESID 139 ++ L++L G I + L++ G+ + + L HI ++ Sbjct: 45 LTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEGILDMLXAWGANHINRVE 100 >2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein structure initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1 Length = 491 Score = 26.3 bits (57), Expect = 4.3 Identities = 9/61 (14%), Positives = 27/61 (44%) Query: 90 NLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESIDKVGGLSVDDF 149 +L+ L+++ F H ++ R ++ + E E +S ++ I+ ++ + Sbjct: 2 SLEALMNVQFFDHAHHKLKIRGLQSPVDVLTFEGREQLSTPFRYDIQFTSSDKAIAPESV 61 Query: 150 I 150 + Sbjct: 62 L 62 >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} SCOP: a.4.5.69 Length = 107 Score = 26.1 bits (57), Expect = 4.8 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 61 LLLFNIGDLELTAGELRSRGYYLGSN-VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQS 119 L++F I + GEL+ + + LK L G IK ++ + SLT Sbjct: 29 LIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPL 88 Query: 120 GKEIAETISQLYQ 132 G+++ I ++ + Sbjct: 89 GEKVLPIIDEIAK 101 >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Score = 25.7 bits (55), Expect = 5.0 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 8/67 (11%) Query: 82 YLGS---NVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEIAETISQLYQRHIESI 138 G VS L L + K I + K ++E S + S+ Sbjct: 186 ITGVHHVTVSRVLASLKRENIL-----DKKKNKIIVYNLGELKHLSEQTSYYSDPNSSSV 240 Query: 139 DKVGGLS 145 DK+ Sbjct: 241 DKLAAAL 247 >3hhh_A Transcriptional regulator, PADR family; PF03551, structural genomics, PSI-2, protein structure initiative; 2.70A {Enterococcus faecalis V583} Length = 116 Score = 25.6 bits (56), Expect = 5.6 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 75 ELRSRGYYLGSNVS--YNLKKLIDLGFIKHQRSRIDKRSIRI--SLTQSGKEIAETISQL 130 L +G+ + L +L ++ ++ +K +R LT SG+ Q Sbjct: 35 ILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 Query: 131 YQRHIESIDKV---GGLSVDDF 149 + + ++K+ GG+ F Sbjct: 95 WTLLSKQVNKMKKNGGIEHVKF 116 >1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative; 2.80A {Thermotoga maritima} SCOP: a.191.1.1 Length = 214 Score = 25.6 bits (56), Expect = 5.8 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 17/78 (21%) Query: 66 IGDLELTAGELRS--RGYYLGSNVSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQSGKEI 123 D A + + + NV NLK++ D F K+ ++ E Sbjct: 147 ASDTLNAADLCHAVFQVEKV--NVLINLKEISDETFRKNMLEELE-------------EQ 191 Query: 124 AETISQLYQRHIESIDKV 141 I YQR + ++ + Sbjct: 192 EAQIEGCYQRVKKMLEGI 209 >1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 Length = 145 Score = 25.3 bits (55), Expect = 8.1 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 2/53 (3%) Query: 91 LKKLIDLGFIKHQRSRIDKRSIRI--SLTQSGKEIAETISQLYQRHIESIDKV 141 +L G+IK + R +T G + + + ++ + I+K Sbjct: 83 FARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEWELTKKVINKF 135 >3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica} Length = 293 Score = 25.0 bits (54), Expect = 8.4 Identities = 7/26 (26%), Positives = 10/26 (38%) Query: 113 RISLTQSGKEIAETISQLYQRHIESI 138 RI T+ +L RH +I Sbjct: 24 RIGFAGERAPTLATLRELVYRHTTAI 49 >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.4.5.69 Length = 112 Score = 25.0 bits (54), Expect = 8.6 Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 4/85 (4%) Query: 61 LLLFNIGDLELTAGELRSRGYYLGSN-VSYNLKKLIDLGFIKHQRSRIDKRSIRISLTQS 119 L+ + GEL + ++ L+++ G + + + +LT Sbjct: 26 SLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPE 85 Query: 120 GKEIAETISQLYQ---RHIESIDKV 141 G + + +S L + ++ Sbjct: 86 GYALYDALSSLCHWGETFAQKKARL 110 >1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5 Length = 299 Score = 25.0 bits (54), Expect = 8.8 Identities = 4/26 (15%), Positives = 9/26 (34%) Query: 113 RISLTQSGKEIAETISQLYQRHIESI 138 I + G + +L H+ + Sbjct: 35 HIGIDDPGPPSLANLDRLIDAHLRRV 60 >1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A Length = 278 Score = 24.9 bits (54), Expect = 8.9 Identities = 7/26 (26%), Positives = 10/26 (38%) Query: 113 RISLTQSGKEIAETISQLYQRHIESI 138 RI L + T+ + H SI Sbjct: 14 RIGLDGRPRPDLGTLHAIVAAHNRSI 39 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.138 0.382 Gapped Lambda K H 0.267 0.0694 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,379,626 Number of extensions: 59404 Number of successful extensions: 313 Number of sequences better than 10.0: 1 Number of HSP's gapped: 293 Number of HSP's successfully gapped: 110 Length of query: 171 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 85 Effective length of database: 3,608,246 Effective search space: 306700910 Effective search space used: 306700910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.3 bits)