HHsearch alignment for GI: 254780353 and conserved domain: COG0188
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1833.17 Aligned_cols=727 Identities=42% Similarity=0.682 Sum_probs=693.0
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHH
Q ss_conf 66531999999888888899985104764112897046899999998689998980354053666542768874789999
Q gi|254780353|r 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYD 96 (753)
Q Consensus 17 i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~ 96 (753)
T Consensus 8 i~~v~i~~e~~~syl~YAmsVIv~RALPdVRDGLKPVqRRILYaM~e~gl~~d~~~kKsAriVGdvmGkyHPHGDssiYd 87 (804)
T COG0188 8 IEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDKKYKKSARIVGDVMGKYHPHGDSSIYD 87 (804)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 51265999999999988799886401775234786089998899997499989970003066775335678887168999
Q ss_pred HHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHH
Q ss_conf 99961001321661326788708867797100246899855999999842187861752167996324223123452676
Q gi|254780353|r 97 SLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLL 176 (753)
Q Consensus 97 a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL 176 (753)
T Consensus 88 alVRMAQdfs~RypLVdgqGNFGSiDgD~aAAMRYTEaRLs~ia~elL~di~kdtVdf~~NyDg~~~EP~VLPa~~PnLL 167 (804)
T COG0188 88 ALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEARLSKIAEELLEDIDKDTVDFVPNYDGSEKEPEVLPARFPNLL 167 (804)
T ss_pred HHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99997104341576231687788999973787778886231989998744465705144079998558740346687067
Q ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 42665046777751677788999999999872865320134432036778877601069889998985033415999999
Q gi|254780353|r 177 ANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 (753)
Q Consensus 177 ~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~ 256 (753)
T Consensus 168 vNGssGIAVGmATnIPPHNl~Ev~da~~~li~np~~~~~~lm~~i~GPDFPTgg~I~-g~~~I~~aY~tGrG~i~vRa~~ 246 (804)
T COG0188 168 VNGSSGIAVGMATNIPPHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIII-GRSGIREAYETGRGSIRVRAKA 246 (804)
T ss_pred ECCCCCEECCEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEE-CCHHHHHHHCCCCCEEEEEEEE
T ss_conf 606874101230577998989999999999709997467773106999899866685-4145678770078459999899
Q ss_pred EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 98643788407999524200216899999999864022213457764067660588985045458899999875420000
Q gi|254780353|r 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDME 336 (753)
Q Consensus 257 ~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq 336 (753)
T Consensus 247 ~iE~~~~gr~~IvItEiPyqvnka~lie~Iaelv~~kki~gis~vrDEsdr~giRivIelk~~~~~~~vln~Lfk~T~LQ 326 (804)
T COG0188 247 EIEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLFKLTDLQ 326 (804)
T ss_pred EEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCHHH
T ss_conf 99953788338999966970158999999999985487357300001026887079999777641789999998744187
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---C
Q ss_conf 1223311333126897220499999989999899999999999999999999999999864107899997520000---1
Q gi|254780353|r 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---P 413 (753)
Q Consensus 337 ~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~---~ 413 (753)
T Consensus 327 ~~f~~nm~ai~~-~~P~~~~L~~iL~~~~~hr~~vi~rR~~~~L~Ka~~R~hileGl~~a~~~iDevI~iIr~s~~~~~a 405 (804)
T COG0188 327 TSFNVNMLALVN-GRPKVLNLKEILSEFLEHRLEVVTRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEA 405 (804)
T ss_pred HHHCCEEEEECC-CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 750710687317-8031537999999999999999889999999999999989988999997147889888708981678
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 10000002577577889988789999889999766678999988776544203978878999999999987417743345
Q gi|254780353|r 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 (753)
Q Consensus 414 k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~ 493 (753)
T Consensus 406 ~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~~i~~E~~~L~~~i~~l~~iL~s~~~~~~~i~~eL~~~~~k~gd~---- 481 (804)
T COG0188 406 KEELMARFGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDE---- 481 (804)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 9999987389678899998626777640408788889999999999999875388999999999999999871853----
Q ss_pred CCCCCEEECCCHHHHHHHHCCCCCCCCEEEEECCCEEECCCCCCCC---CCCCCCCCCCCCEEEEEECCCCCEEEEECCC
Q ss_conf 5542000011000000110024566705998710102025655445---5322345555540121111478178980688
Q gi|254780353|r 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 (753)
Q Consensus 494 ~RRT~iie~~~~~~~~~~EdlI~~E~v~V~LS~~GyIKr~k~~~~~---~~~~~~KegD~l~~~~~~~t~d~LLffTs~G 570 (753)
T Consensus 482 -Rrt~i~~~~~~--~~~~edli~~e~vvv~ls~~gyikr~~~~~~~~q~~~~~~~ke~d~~~~~~~~~t~d~ll~ft~~G 558 (804)
T COG0188 482 -RRTEIVEEEED--EIEDEDLIAEEDVVVTLSHKGYIKRVPLKGYEAQRVSGLGLKEGDFLERLFEANTHDTLLFFTSKG 558 (804)
T ss_pred -CEEHHCCCCCC--CCCHHHHCCCCCEEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCHHHHEEEECCCCEEEEECCCC
T ss_conf -20001156532--232133133554499981653278634566433022111324340334305504664699982788
Q ss_pred EEEEEEHHHCC--CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCC
Q ss_conf 27875511212--1234444222235767653078999857998599997489789963887402333562788536898
Q gi|254780353|r 571 KAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 (753)
Q Consensus 571 kvY~l~a~~Ip--s~~~kG~pI~~ll~l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D 648 (753)
T Consensus 559 ~~y~~~~~~lp~~~~~~~G~~i~~ll~~~~~E~i~~v~~~~~~~~l~~~T~~G~vK~~~l~~f~~~~~~g~~ai~L~~~d 638 (804)
T COG0188 559 RVYKLKVYELPEGSRRSRGEPIVNLLSLEKGEKITAVLPVNDDQYLFLATKKGYVKKTSLSEFKNIRSKGKIAIKLKEGD 638 (804)
T ss_pred CEEEECCEECCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEHHHHHCCCCCCEEEEECCCCC
T ss_conf 48973130335556666781035424578885479999707860599991699479820355312356770689717776
Q ss_pred CEEEEEECC--CCEEEEEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEEEEEEECCCCC-EEEEECCCCCCCCCH
Q ss_conf 056889618--98099995699389955787783361-21413342187875689997338883-699941775664511
Q gi|254780353|r 649 KMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSEN 724 (753)
Q Consensus 649 ~li~v~~~~--~d~iiliT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~~~~~~~~e~~-~il~~t~~g~~k~~~ 724 (753)
T Consensus 639 ~l~~~~~~~~~~~~i~~~t~~G~~~~F~~~~v~~~gr~a~Gv~~i~l~~~d~~~~~~~-~~~~~~~~l~~t~~g~~kr~~ 717 (804)
T COG0188 639 ELVSVSLTSDGDDDILLVTSNGKALRFPESEVREMGRGAKGVKGIKLKEGDKVVSLSV-VEDDEAKLLTVTERGYGKRTK 717 (804)
T ss_pred CEEEEEECCCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCCEEECCCCCEEEEEEE-CCCCCEEEEEEECCCCEEECC
T ss_conf 3012452157876089991487378740344221154136864064376575665320-147860589984367200041
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC-CCEECC
Q ss_conf 43225444136660275526776-861049
Q gi|254780353|r 725 DLLGWLGKRGGVGSLVPKGFPRS-GKFLSS 753 (753)
Q Consensus 725 ~~~~~~~~RggkG~~~~k~~~K~-gklV~A 753 (753)
T Consensus 718 ~~~~~~~~Rg~~G~~~~~~~~~~~~~~~~~ 747 (804)
T COG0188 718 ISEYPVTKRGGKGVILIKGTKRNRGKVVAA 747 (804)
T ss_pred HHHCCCCCCCCCCEECCCCCCCCCCEEEEE
T ss_conf 421342466766412454555655337764