HHsearch alignment for GI: 254780353 and conserved domain: COG0188
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair].
Probab=99.61 E-value=9.2e-14 Score=123.03 Aligned_cols=176 Identities=23% Similarity=0.380 Sum_probs=89.7
Q ss_pred CCCEEEEECCCEEECCCCCC------CCCCCCCCCCCCCCEEEEEEC-CCCCEEEEECCCEEEEEEHHHCCC-C-CCCCC
Q ss_conf 67059987101020256554------455322345555540121111-478178980688278755112121-2-34444
Q gi|254780353|r 518 EPITVVISNRGWIRSLKSHS------VDLSALHFKEGDSLKIALHAH-TTDRILLLSTDGKAYTLPAGNLLS-G-RGHGE 588 (753)
Q Consensus 518 E~v~V~LS~~GyIKr~k~~~------~~~~~~~~KegD~l~~~~~~~-t~d~LLffTs~GkvY~l~a~~Ips-~-~~kG~ 588 (753)
T Consensus 601 ~~~l~~~T~~G~vK~~~l~~f~~~~~~g~~ai~L~~~d~l~~~~~~~~~~~~i~~~t~~G~~~~F~~~~v~~~gr~a~Gv 680 (804)
T COG0188 601 DQYLFLATKKGYVKKTSLSEFKNIRSKGKIAIKLKEGDELVSVSLTSDGDDDILLVTSNGKALRFPESEVREMGRGAKGV 680 (804)
T ss_pred CEEEEEEECCCCEEEEEHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCC
T ss_conf 60599991699479820355312356770689717776301245215787608999148737874034422115413686
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCC-EEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCC----EEEEEECCC-CEEE
Q ss_conf 222235767653078999857998-5999974897899638874023335627885368980----568896189-8099
Q gi|254780353|r 589 AIQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTG-DHVA 662 (753)
Q Consensus 589 pI~~ll~l~~~EkIv~~~~~~~~~-~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~----li~v~~~~~-d~ii 662 (753)
T Consensus 681 ~~---i~l~~~d~~~~~~~~~~~~~~~l~~t~~g~~kr~~~~~~~~~~Rg~~G~~~~~~~~~~~~~~~~~~~v~~~~~~~ 757 (804)
T COG0188 681 KG---IKLKEGDKVVSLSVVEDDEAKLLTVTERGYGKRTKISEYPVTKRGGKGVILIKGTKRNRGKVVAAITVDEDDEIM 757 (804)
T ss_pred CE---EECCCCCEEEEEEECCCCCEEEEEEECCCCEEECCHHHCCCCCCCCCCEECCCCCCCCCCEEEEEECCCCCCEEE
T ss_conf 40---643765756653201478605899843672000414213424667664124545556553377641368875389
Q ss_pred EEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCC
Q ss_conf 995699389955787783361-2141334218787
Q gi|254780353|r 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG 696 (753)
Q Consensus 663 liT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~ 696 (753)
T Consensus 758 ~~t~~g~~ir~~~~~i~~~~r~t~gv~~~~~~~~~ 792 (804)
T COG0188 758 LITSRGKLIRTAVSEISITGRNTQGVKLINLDEDE 792 (804)
T ss_pred EECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCC
T ss_conf 98269638985314323124445662765317997