HHsearch alignment for GI: 254780353 and conserved domain: PRK05561
>PRK05561 DNA topoisomerase IV subunit A; Validated.
Probab=99.61 E-value=1.1e-12 Score=114.98 Aligned_cols=184 Identities=13% Similarity=0.068 Sum_probs=140.9
Q ss_pred CCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCC
Q ss_conf 14781789806882787551121212344442222357676530789998579985999974897899638874023335
Q gi|254780353|r 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637 (753)
Q Consensus 558 ~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~ 637 (753)
T Consensus 506 ~~E~v~V~lS~~GyIKr~k~~~~~~---~------~~~~Ke~D~v~~~~~~~T~d~LLfFTn~Grvy~lkv~~IP~~r~~ 576 (745)
T PRK05561 506 PDEPVTVVLSKKGWVRRAKGHDIDP---A------GLGYKEGDSLLFAFEARTTDKLLFFTSTGRVYSLPVHELPSARGQ 576 (745)
T ss_pred CCCCCEEEECCCEEEEEECCCCCCC---C------CCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEEHHHCCCCCCC
T ss_conf 6766189981780499844888675---4------456777853258999806976999957975999892208786678
Q ss_pred CEE---EEEECCCCCEEEEEECCC-CEEEEEECCCCEEEEEHHHCCCCCHHHCCEEEECCCCCEEEEEEEECCCCCEEEE
Q ss_conf 627---885368980568896189-8099995699389955787783361214133421878756899973388836999
Q gi|254780353|r 638 GKT---FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713 (753)
Q Consensus 638 Gk~---~ikLk~~D~li~v~~~~~-d~iiliT~~Gk~LrF~~~eIr~~gRgkGVk~i~Lkd~~~~~~~~~~~~e~~~il~ 713 (753)
T Consensus 577 G~pi~nll~L~~~EkIv~vl~~~~~~~lllaTk~G~~kr~~l~e~~~-~~k~G~~ai~L~~gDelv~~~~i~~~~d~I~l 655 (745)
T PRK05561 577 GEPLTGLIDLEPGEEIVHVLVGDPDQKLLLASSAGYGFVVSEEDLVG-RNRAGKAVINLKDGDKVLAPVPVEGDEDSLAA 655 (745)
T ss_pred CCCHHHCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHHCC-CCCCCEEEEEECCCCEEEEEEEECCCCCEEEE
T ss_conf 80898806899999699999858987699997893299978698004-46267188861899889888994699988999
Q ss_pred ECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 4177566451143225444136660275526776861049
Q gi|254780353|r 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 (753)
Q Consensus 714 ~t~~g~~k~~~~~~~~~~~RggkG~~~~k~~~K~gklV~A 753 (753)
T Consensus 656 vT~~Gk~lrF~~~evr~~gR-gkGVkgikL-k~~D~Vv~~ 693 (745)
T PRK05561 656 ITQRGRLLVFPLSELPELSR-GKGVKLIEL-KKEEGLADL 693 (745)
T ss_pred EECCCCEEEEEHHHCCCCCC-CCCCCEEEE-CCCCEEEEE
T ss_conf 95898289979888777575-468014766-899989999