HHsearch alignment for GI: 254780353 and conserved domain: PRK05561

>PRK05561 DNA topoisomerase IV subunit A; Validated.
Probab=99.61  E-value=1.1e-12  Score=114.98  Aligned_cols=184  Identities=13%  Similarity=0.068  Sum_probs=140.9

Q ss_pred             CCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCC
Q ss_conf             14781789806882787551121212344442222357676530789998579985999974897899638874023335
Q gi|254780353|r  558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK  637 (753)
Q Consensus       558 ~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~  637 (753)
T Consensus       506 ~~E~v~V~lS~~GyIKr~k~~~~~~---~------~~~~Ke~D~v~~~~~~~T~d~LLfFTn~Grvy~lkv~~IP~~r~~  576 (745)
T PRK05561        506 PDEPVTVVLSKKGWVRRAKGHDIDP---A------GLGYKEGDSLLFAFEARTTDKLLFFTSTGRVYSLPVHELPSARGQ  576 (745)
T ss_pred             CCCCCEEEECCCEEEEEECCCCCCC---C------CCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEEHHHCCCCCCC
T ss_conf             6766189981780499844888675---4------456777853258999806976999957975999892208786678


Q ss_pred             CEE---EEEECCCCCEEEEEECCC-CEEEEEECCCCEEEEEHHHCCCCCHHHCCEEEECCCCCEEEEEEEECCCCCEEEE
Q ss_conf             627---885368980568896189-8099995699389955787783361214133421878756899973388836999
Q gi|254780353|r  638 GKT---FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID  713 (753)
Q Consensus       638 Gk~---~ikLk~~D~li~v~~~~~-d~iiliT~~Gk~LrF~~~eIr~~gRgkGVk~i~Lkd~~~~~~~~~~~~e~~~il~  713 (753)
T Consensus       577 G~pi~nll~L~~~EkIv~vl~~~~~~~lllaTk~G~~kr~~l~e~~~-~~k~G~~ai~L~~gDelv~~~~i~~~~d~I~l  655 (745)
T PRK05561        577 GEPLTGLIDLEPGEEIVHVLVGDPDQKLLLASSAGYGFVVSEEDLVG-RNRAGKAVINLKDGDKVLAPVPVEGDEDSLAA  655 (745)
T ss_pred             CCCHHHCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHHCC-CCCCCEEEEEECCCCEEEEEEEECCCCCEEEE
T ss_conf             80898806899999699999858987699997893299978698004-46267188861899889888994699988999


Q ss_pred             ECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf             4177566451143225444136660275526776861049
Q gi|254780353|r  714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS  753 (753)
Q Consensus       714 ~t~~g~~k~~~~~~~~~~~RggkG~~~~k~~~K~gklV~A  753 (753)
T Consensus       656 vT~~Gk~lrF~~~evr~~gR-gkGVkgikL-k~~D~Vv~~  693 (745)
T PRK05561        656 ITQRGRLLVFPLSELPELSR-GKGVKLIEL-KKEEGLADL  693 (745)
T ss_pred             EECCCCEEEEEHHHCCCCCC-CCCCCEEEE-CCCCEEEEE
T ss_conf             95898289979888777575-468014766-899989999