HHsearch alignment for GI: 254780353 and conserved domain: PRK09630
>PRK09630 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00 E-value=0 Score=1203.05 Aligned_cols=459 Identities=26% Similarity=0.432 Sum_probs=408.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 31999999888888899985104764112897046899999998689998980354053666542768874789999999
Q gi|254780353|r 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99 (753)
Q Consensus 20 ~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v 99 (753)
T Consensus 2 ~~i~~~~~~~yl~Ya~~vI~~RAlPdvrDGLKPVqRRiLy~m~~~~---~~~~~K~ArvvG~v~g-yHPHGd~siy~alv 77 (479)
T PRK09630 2 SDVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA-LHPHGDAPIVEALV 77 (479)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC---CCCCCEEEEEECCEEC-CCCCCHHHHHHHHH
T ss_conf 6279999999998889999851177532588609999999983068---9987134244213511-48887278999999
Q ss_pred HHCCHHHCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHC
Q ss_conf 610013216613267887088-6779710024689985599999984218786175216799632422312345267642
Q gi|254780353|r 100 RLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178 (753)
Q Consensus 100 ~maq~~~~~~pli~g~GnfGs-~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~N 178 (753)
T Consensus 78 rmaq----r~~LvdgqGNfGs~~dgd~~AAmRYtE~rls~~a~~~l--~~~dtv~f~~NyDgs~~EP~vLPa~~PnLLvN 151 (479)
T PRK09630 78 VLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLAKEVL--FNTDLMTFHDSYDGREKEPDILPAKLPLLLLH 151 (479)
T ss_pred HHHC----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCEEECCCCHHHHC
T ss_conf 9856----76156467888999899804677899987589999983--55685467789899855771211457187754
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 66504677775167778899999999987286532013443203677887760106988999898503341599999998
Q gi|254780353|r 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 (753)
Q Consensus 179 g~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~ 258 (753)
T Consensus 152 Gs~GIAVGmAT~IpPHNl~EvidA~i~~i~~~~~~~--------~PDFPTGGii~-~~~-----Y~tGrG~i~vRak~~~ 217 (479)
T PRK09630 152 GVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFTL--------LPDFPSGGLMD-ASE-----YQDGLGSITLRASIDI 217 (479)
T ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC--------CCCCCCCCEEC-HHH-----HCCCCCEEEEEEEEEE
T ss_conf 775222345525899898999999999762898775--------89999977305-466-----5578981899999999
Q ss_pred EECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 64378840799952420021689999999986402221345776406766058898504545889999987542000012
Q gi|254780353|r 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338 (753)
Q Consensus 259 e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~s 338 (753)
T Consensus 218 ~~----~k~ivItEiPy~v~k~~lie~I~~~~~~~~~-~I~~i~D~s~~~~rivI~l-kr~~~~~~vl~~Lyk~T~Lq~s 291 (479)
T PRK09630 218 IN----DKTLLIKEICPSTTTETLIRSIENAAKRGII-KIDSIQDFSTDLPHIEIKL-PKGIYAKDLLPPLFEHTECQVI 291 (479)
T ss_pred EE----CCEEEEEECCCCCCHHHHHHHHHHHHHCCCC-CCCCEEECCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCHHHE
T ss_conf 71----4438997068656699999999999864876-6885113357985599847-9999999999999836962412
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHCCC-
Q ss_conf 23311333126897220499999989999899999999999999999999---9999998---6410789999752000-
Q gi|254780353|r 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE---ILKGLLI---AYLNIDEIIAIIRNED- 411 (753)
Q Consensus 339 f~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~Rlh---IleGl~~---a~~~ID~vI~iIR~s~- 411 (753)
T Consensus 292 f~~N~~aI~~g-~P~~l~l~eiL~~~~~~~~~~lrr~l~~~~-~~~~r~~~~k~Le~l~I~~~~~d~I~eiI~~i~~~~~ 369 (479)
T PRK09630 292 LTSKPTAIYQN-KPVETSISEILKLHTEALQGYLKKELLILQ-DSLTREHYHKTLEYIFIKHKLYDTVREMLSKRKTKPS 369 (479)
T ss_pred ECCCEEEEECC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 23323788889-086666899999999987554346689998-9999999998888999987789999999998853898
Q ss_pred --CCCCCCCCCCC--------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf --01100000025--------775778899-8878999988999976667899998877654420397887899999999
Q gi|254780353|r 412 --KPKPVMVSRFS--------LTENQVDAI-LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 (753)
Q Consensus 412 --~~k~~L~~~f~--------lse~QA~aI-L~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~ 480 (753)
T Consensus 370 ~ed~~~~l~~~~~~~~~~~~~~i~~q~~~~L~~l~l~kL~~Le~~k~~~El~~l~~~i~~l~~~l~---~l~kiii~eL~ 446 (479)
T PRK09630 370 ASDLHNAVLHALEPFLHTLPTAPDKQATSQLASLTIKKILCFNENAYTKELAAIEKKQAAVQKDLS---QLKKYTVKYLK 446 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_conf 999999999876566787754338999999999899987513399999999999999999999999---99999999999
Q ss_pred HHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCE
Q ss_conf 99874177433455542000011000000110024566705
Q gi|254780353|r 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 (753)
Q Consensus 481 eikkkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~ 521 (753)
T Consensus 447 ~ikekYGd~---~eRRTeI~~~~-----~~~~~~~~~e~~v 479 (479)
T PRK09630 447 GLLERYGHL---GHRKTQITKFK-----AKKTSILKQQTLI 479 (479)
T ss_pred HHHHHHCCC---CCCCCCCCCCC-----CHHHHCCCHHCCC
T ss_conf 999985899---87767560243-----2343024200259