HHsearch alignment for GI: 254780353 and conserved domain: PRK09630

>PRK09630 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00  E-value=0  Score=1203.05  Aligned_cols=459  Identities=26%  Similarity=0.432  Sum_probs=408.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             31999999888888899985104764112897046899999998689998980354053666542768874789999999
Q gi|254780353|r   20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV   99 (753)
Q Consensus        20 ~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v   99 (753)
T Consensus         2 ~~i~~~~~~~yl~Ya~~vI~~RAlPdvrDGLKPVqRRiLy~m~~~~---~~~~~K~ArvvG~v~g-yHPHGd~siy~alv   77 (479)
T PRK09630          2 SDVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGRTMA-LHPHGDAPIVEALV   77 (479)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC---CCCCCEEEEEECCEEC-CCCCCHHHHHHHHH
T ss_conf             6279999999998889999851177532588609999999983068---9987134244213511-48887278999999


Q ss_pred             HHCCHHHCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHC
Q ss_conf             610013216613267887088-6779710024689985599999984218786175216799632422312345267642
Q gi|254780353|r  100 RLAQPFVQRYPLISGQGNFGN-IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN  178 (753)
Q Consensus       100 ~maq~~~~~~pli~g~GnfGs-~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~N  178 (753)
T Consensus        78 rmaq----r~~LvdgqGNfGs~~dgd~~AAmRYtE~rls~~a~~~l--~~~dtv~f~~NyDgs~~EP~vLPa~~PnLLvN  151 (479)
T PRK09630         78 VLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLAKEVL--FNTDLMTFHDSYDGREKEPDILPAKLPLLLLH  151 (479)
T ss_pred             HHHC----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCEEECCCCHHHHC
T ss_conf             9856----76156467888999899804677899987589999983--55685467789899855771211457187754


Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             66504677775167778899999999987286532013443203677887760106988999898503341599999998
Q gi|254780353|r  179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV  258 (753)
Q Consensus       179 g~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~  258 (753)
T Consensus       152 Gs~GIAVGmAT~IpPHNl~EvidA~i~~i~~~~~~~--------~PDFPTGGii~-~~~-----Y~tGrG~i~vRak~~~  217 (479)
T PRK09630        152 GVDGIAVGMTTKIFPHNFCELLEAQIAILNDQPFTL--------LPDFPSGGLMD-ASE-----YQDGLGSITLRASIDI  217 (479)
T ss_pred             CCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC--------CCCCCCCCEEC-HHH-----HCCCCCEEEEEEEEEE
T ss_conf             775222345525899898999999999762898775--------89999977305-466-----5578981899999999


Q ss_pred             EECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             64378840799952420021689999999986402221345776406766058898504545889999987542000012
Q gi|254780353|r  259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR  338 (753)
Q Consensus       259 e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~s  338 (753)
T Consensus       218 ~~----~k~ivItEiPy~v~k~~lie~I~~~~~~~~~-~I~~i~D~s~~~~rivI~l-kr~~~~~~vl~~Lyk~T~Lq~s  291 (479)
T PRK09630        218 IN----DKTLLIKEICPSTTTETLIRSIENAAKRGII-KIDSIQDFSTDLPHIEIKL-PKGIYAKDLLPPLFEHTECQVI  291 (479)
T ss_pred             EE----CCEEEEEECCCCCCHHHHHHHHHHHHHCCCC-CCCCEEECCCCCCEEEEEC-CCCCCHHHHHHHHHHCCCHHHE
T ss_conf             71----4438997068656699999999999864876-6885113357985599847-9999999999999836962412


Q ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHCCC-
Q ss_conf             23311333126897220499999989999899999999999999999999---9999998---6410789999752000-
Q gi|254780353|r  339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE---ILKGLLI---AYLNIDEIIAIIRNED-  411 (753)
Q Consensus       339 f~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~Rlh---IleGl~~---a~~~ID~vI~iIR~s~-  411 (753)
T Consensus       292 f~~N~~aI~~g-~P~~l~l~eiL~~~~~~~~~~lrr~l~~~~-~~~~r~~~~k~Le~l~I~~~~~d~I~eiI~~i~~~~~  369 (479)
T PRK09630        292 LTSKPTAIYQN-KPVETSISEILKLHTEALQGYLKKELLILQ-DSLTREHYHKTLEYIFIKHKLYDTVREMLSKRKTKPS  369 (479)
T ss_pred             ECCCEEEEECC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             23323788889-086666899999999987554346689998-9999999998888999987789999999998853898


Q ss_pred             --CCCCCCCCCCC--------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             --01100000025--------775778899-8878999988999976667899998877654420397887899999999
Q gi|254780353|r  412 --KPKPVMVSRFS--------LTENQVDAI-LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR  480 (753)
Q Consensus       412 --~~k~~L~~~f~--------lse~QA~aI-L~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~  480 (753)
T Consensus       370 ~ed~~~~l~~~~~~~~~~~~~~i~~q~~~~L~~l~l~kL~~Le~~k~~~El~~l~~~i~~l~~~l~---~l~kiii~eL~  446 (479)
T PRK09630        370 ASDLHNAVLHALEPFLHTLPTAPDKQATSQLASLTIKKILCFNENAYTKELAAIEKKQAAVQKDLS---QLKKYTVKYLK  446 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_conf             999999999876566787754338999999999899987513399999999999999999999999---99999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCE
Q ss_conf             99874177433455542000011000000110024566705
Q gi|254780353|r  481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT  521 (753)
Q Consensus       481 eikkkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~  521 (753)
T Consensus       447 ~ikekYGd~---~eRRTeI~~~~-----~~~~~~~~~e~~v  479 (479)
T PRK09630        447 GLLERYGHL---GHRKTQITKFK-----AKKTSILKQQTLI  479 (479)
T ss_pred             HHHHHHCCC---CCCCCCCCCCC-----CHHHHCCCHHCCC
T ss_conf             999985899---87767560243-----2343024200259