HHsearch alignment for GI: 254780353 and conserved domain: PRK09630
>PRK09630 DNA topoisomerase IV subunit A; Provisional.
Probab=97.45 E-value=0.0078 Score=40.84 Aligned_cols=106 Identities=11% Similarity=-0.004 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCC-CCCCCCCHH----
Q ss_conf 99998999989999999999999999999999999986410-------789999752000011000-000257757----
Q gi|254780353|r 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN-------IDEIIAIIRNEDKPKPVM-VSRFSLTEN---- 426 (753)
Q Consensus 359 eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~-------ID~vI~iIR~s~~~k~~L-~~~f~lse~---- 426 (753)
T Consensus 307 l~l~eiL~~~~~~~~~~lrr~l~~~~~~~~r~~-~~k~Le~l~I~~~~~d~I~eiI~~i~~~~~~ed~~~~l~~~~~~~~ 385 (479)
T PRK09630 307 TSISEILKLHTEALQGYLKKELLILQDSLTREH-YHKTLEYIFIKHKLYDTVREMLSKRKTKPSASDLHNAVLHALEPFL 385 (479)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 668999999999875543466899989999999-9988889999877899999999988538989999999998765667
Q ss_pred --HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf --788998878999988999976-667899998877654420
Q gi|254780353|r 427 --QVDAILNLRLRSLRKLEEYQI-KSELDNLLAEKEKIDSLL 465 (753)
Q Consensus 427 --QA~aIL~mrL~rLt~le~~kl-~~E~~eL~~~i~~L~~IL 465 (753)
T Consensus 386 ~~~~~~i~~q~~~~L~~l~l~kL~~Le~~k~~~El~~l~~~i 427 (479)
T PRK09630 386 HTLPTAPDKQATSQLASLTIKKILCFNENAYTKELAAIEKKQ 427 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 877543389999999998999875133999999999999999