HHsearch alignment for GI: 254780353 and conserved domain: PRK13979
>PRK13979 DNA topoisomerase IV subunit A; Provisional,Validated.
Probab=100.00 E-value=0 Score=1965.81 Aligned_cols=734 Identities=31% Similarity=0.518 Sum_probs=684.2
Q ss_pred CCCCC-CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCC
Q ss_conf 76665-42456653199999988888889998510476411289704689999999868999898035405366654276
Q gi|254780353|r 8 NSNTL-VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 (753)
Q Consensus 8 ~~~~~-~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gky 86 (753)
T Consensus 4 ~~~~~p~~~~i~~~~i~~em~~syl~YamsVI~~RAlPDvRDGLKPVhRRiLy~M~~lg~~~~~~~~KsArivGdv~Gky 83 (959)
T PRK13979 4 KKIVIPKDNNIIKFPLEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGDILGKY 83 (959)
T ss_pred CCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 56678986875561489999988998889987750077644688518999999998738999999841235511026477
Q ss_pred CCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 88747899999996100132166132678870886779710024689985599999984218786175216799632422
Q gi|254780353|r 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166 (753)
Q Consensus 87 hPHGd~s~y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~ 166 (753)
T Consensus 84 HPHGD~avYdalVrmaQ~fs~r~pLidgqGNfGSidgD~~AAmRYTEarl~~~a~~ll~di~k~tVdf~~NyD~s~~EP~ 163 (959)
T PRK13979 84 HPHGDSSVYDAMVILAQNFTTRMPLIDGHGNWGSIDGDSAAAMRYTEARLTPIAMEMLRDIDKDVVDMVDNYSDSEKEPK 163 (959)
T ss_pred CCCCCHHHHHHHHHHHCCHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89870479999999700013127606067867899998103430688888999999983304277476148898876865
Q ss_pred EECCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 31234526764266504677775167778899999999987286532013443203677887760106988999898503
Q gi|254780353|r 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 (753)
Q Consensus 167 ~lp~~~P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG 246 (753)
T Consensus 164 VLPa~~PnLLvNGs~GIAVGMATnIPpHNL~Evida~~a~i~np~~t~~eLm~~i~GPDFPTGGiI~-g~~gi~~aY~TG 242 (959)
T PRK13979 164 VLPARYPNLLVNGAFGIAVGLATNIPPHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILI-GKKSLLSAYETG 242 (959)
T ss_pred CCCCCCCHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEE-CCHHHHHHHHHC
T ss_conf 1357774322137740114122587997889999999999708998899998218799889984898-878799999848
Q ss_pred CCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHHCCCCCEEEEEEEECCCCCH
Q ss_conf 341599999998643788407999524200216899999999864022----2134577640676605889850454588
Q gi|254780353|r 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDVRIVLFPKNRSLDP 322 (753)
Q Consensus 247 ~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~k----i~gi~dirDeSd~~~~~vi~~~~r~~~~ 322 (753)
T Consensus 243 rG~i~iRak~~iE~~~~gr~~IiItEiPY~vnka~lie~Iaelv~~kk~~k~i~gIsdiRDESDr~GiRIVIelKr~a~~ 322 (959)
T PRK13979 243 EGKVTLRAKTTIEKLENGRLGIVITEFPYRRNKAKLLQTISEMTADKKHSKALENISDIRDESDRNGIRAVIEFKKSADE 322 (959)
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCH
T ss_conf 98399998889996178844899996687577899999999999713133668860042013677863899997688975
Q ss_pred H---HHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9---9999875420000122331133312689722049999998999989999999999999999999999999986410
Q gi|254780353|r 323 D---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399 (753)
Q Consensus 323 ~---~vl~~Lyk~T~Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ 399 (753)
T Consensus 323 ~v~e~vLn~Lyk~T~LQ~sf~vNmlaL~~g-~P~~l~Lk~iL~~fl~hR~eVI~RRt~~~L~ka~~R~HILeGL~iAl~n 401 (959)
T PRK13979 323 DVAEKVLKYLYKKTDLQCNISFNMVALADG-KPETMGLKAIIKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGI 401 (959)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEEECCC-CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 769999999997498836774589973399-1349778999999999999999999999998899899999989999978
Q ss_pred HHHHHHHHHCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 789999752000---01100000025775778899887899998899997666789999887765442039788789999
Q gi|254780353|r 400 IDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 (753)
Q Consensus 400 ID~vI~iIR~s~---~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~ 476 (753)
T Consensus 402 IDevI~iIR~S~~~~~Ak~~L~~~f~lse~QA~AILdmrL~rLT~LE~~ki~~E~~eL~~~I~~l~~IL~s~~~l~~iIk 481 (959)
T PRK13979 402 MDEIIKTIRASKSKKDASENLIEKFGFTDEQAEAILELMLYRLTGLEIKVFEKEYKELEKLIKKLEKILSSEKELLKVIK 481 (959)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999999818983799998987619999999999998999987889999999999999999999999679999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCEEEEECCCEEECC-----CCCCCCCCCCCCCCCCCC
Q ss_conf 999999874177433455542000011000000110024566705998710102025-----655445532234555554
Q gi|254780353|r 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSHSVDLSALHFKEGDSL 551 (753)
Q Consensus 477 ~EL~eikkkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI~~E~v~V~LS~~GyIKr~-----k~~~~~~~~~~~KegD~l 551 (753)
T Consensus 482 ~EL~eik~kygd~-----RRT~Ii~~~-~~~~~~~EDLI~~EdvVVtlS~~GYIKR~pl~~Y~RgGkG~~g~~~ke~D~v 555 (959)
T PRK13979 482 KELKEVKEKYGDE-----RRTSIIEDD-EKAKIDIEELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYREGDFN 555 (959)
T ss_pred HHHHHHHHHHCCC-----CCEEEECCC-CCCCCCHHHHCCCCCEEEEEECCCEEEECCHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 9999999983998-----742666563-2033657673456655999806964750458881367899778755566510
Q ss_pred EEEEEECCCCCEEEEECCCEEEEEEHHHCCCC--CCCCCCCCCCCCC--CCCCEEEEEEEE---CCCCEEEEEECCCCEE
Q ss_conf 01211114781789806882787551121212--3444422223576--765307899985---7998599997489789
Q gi|254780353|r 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL--NHNQDIVTAFVY---DSTCKLLVVSSKGNAF 624 (753)
Q Consensus 552 ~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~--~~kG~pI~~ll~l--~~~EkIv~~~~~---~~~~~lll~Tk~G~ik 624 (753)
T Consensus 556 ~~l~~a~THd~lLfFTn~GkvY~lKvyeIPe~sr~aKG~~i~Nll~~l~l~~E~I~~il~v~~f~~~~~lvfaTk~G~VK 635 (959)
T PRK13979 556 KFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKTIDLEEEKIIEAYSIEDFTPQKDFIFITDSGGIK 635 (959)
T ss_pred EEEEEECCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEE
T ss_conf 26899528963999957985999870566777700389573441055788984589977412267775499992898688
Q ss_pred EEEHHHHHCCCCCCEEEEEECCCCCEEEEEECCC-C---EEEEEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCCEEE
Q ss_conf 9638874023335627885368980568896189-8---099995699389955787783361-2141334218787568
Q gi|254780353|r 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISD 699 (753)
Q Consensus 625 r~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~~-d---~iiliT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~~~~ 699 (753)
T Consensus 636 Kt~L~~f-~~~~sgiiAIkL~egDeLI~V~l~~~~~~~~~i~l~T~~G~~irf~e~~vR~mGR~a~GVrgi~L~~~D~Vv 714 (959)
T PRK13979 636 KTSLDKF-NTNYSKLMALKLKKGEELIKVKLVDRTREEKFLKIKTKKGLSFTVEEPELEPVDRNILGYQLFNLSPNDSIK 714 (959)
T ss_pred CCCHHHC-CCCCCCCEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEEECCCHHCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 3738982-855678366666999879878973588875079996589659971420224578766675214339999898
Q ss_pred EEEEEC--------------------------------------------------------------------------
Q ss_conf 999733--------------------------------------------------------------------------
Q gi|254780353|r 700 VICFKI-------------------------------------------------------------------------- 705 (753)
Q Consensus 700 ~~~~~~-------------------------------------------------------------------------- 705 (753)
T Consensus 715 sm~i~~~~e~~~~~~~i~~~g~i~~~~~~~~~~~~~~~~~~~~~ili~~~~G~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 794 (959)
T PRK13979 715 KVDFCDNYEYKEFYININKKGIIKISDLKKNKSHISLKTNSSKNLLLFSDKGKVYKIPAFMLQNIEESGINISALTGDFE 794 (959)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHCCCCCCCCCCCHHHHHHHC
T ss_conf 61022444200000233420023322100111111113566311354325772330324320233555645022221210
Q ss_pred --------------CCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf --------------888369994177566451143225444136660275526776861049
Q gi|254780353|r 706 --------------CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 (753)
Q Consensus 706 --------------~e~~~il~~t~~g~~k~~~~~~~~~~~RggkG~~~~k~~~K~gklV~A 753 (753)
T Consensus 795 ~~e~vi~~~~~~~~~e~~~il~vTe~G~GKRT~~~eyr~~g~~~~~~k---~~~~~~~~v~~ 853 (959)
T PRK13979 795 KKESIINAISIFEFEEDLSIYFFSKKGLVKKTLLSEFKGEGNSTQVYK---FKHKEDELVSV 853 (959)
T ss_pred CCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEE---EEECCCCEEEE
T ss_conf 223024665203577761599993589746665677334678648999---88448978999