HHsearch alignment for GI: 254780353 and conserved domain: PRK13979
>PRK13979 DNA topoisomerase IV subunit A; Provisional,Validated.
Probab=99.93 E-value=6.8e-24 Score=199.18 Aligned_cols=187 Identities=17% Similarity=0.161 Sum_probs=149.0
Q ss_pred ECCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCC-CCCCCEEEEEEE---ECCCCEEEEEECCCCEEEEEHHHHH
Q ss_conf 114781789806882787551121212344442222357-676530789998---5799859999748978996388740
Q gi|254780353|r 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID-LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII 632 (753)
Q Consensus 557 ~~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~-l~~~EkIv~~~~---~~~~~~lll~Tk~G~ikr~~l~~~~ 632 (753)
T Consensus 753 ~~~~~~ili~~~~G~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~e~vi~~~~~~~~~e~~~il~vTe~G~GKRT~~~eyr 832 (959)
T PRK13979 753 TNSSKNLLLFSDKGKVYKIPAFMLQNIEESGINISALTGDFEKKESIINAISIFEFEEDLSIYFFSKKGLVKKTLLSEFK 832 (959)
T ss_pred CCCCCCEEEECCCCCEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHC
T ss_conf 56631135432577233032432023355564502222121022302466520357776159999358974666567733
Q ss_pred CCCCCCEEEEEECCCCCEEEEEE-C-CCCEEEEEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCC-EEEEEEEECCCC
Q ss_conf 23335627885368980568896-1-898099995699389955787783361-2141334218787-568999733888
Q gi|254780353|r 633 ANTRKGKTFLKVSSEEKMKLVVK-V-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG 708 (753)
Q Consensus 633 ~~~k~Gk~~ikLk~~D~li~v~~-~-~~d~iiliT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~-~~~~~~~~~~e~ 708 (753)
T Consensus 833 ~~g~~~~~~k~~~~~~~~v~~~~~~~~~d~imliT~~G~~IR~~v~~I~~~GR~tqGV~li~L~~~dkVV~~~~i~~~~~ 912 (959)
T PRK13979 833 GEGNSTQVYKFKHKEDELVSVDINEHEQKNILIITKKGMAIRFKSEAVNPMGKIASGVTGISLKDEDKVIFGSIIDENDT 912 (959)
T ss_pred CCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCC
T ss_conf 46786489998844897899997048996389990798799987243470260368806897389987999999747777
Q ss_pred CEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 36999417756645114322544413666027552
Q gi|254780353|r 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743 (753)
Q Consensus 709 ~~il~~t~~g~~k~~~~~~~~~~~RggkG~~~~k~ 743 (753)
T Consensus 913 ~~~~~~~k~~~~~~~~~~~~~~q~~~g~g~~~~~~ 947 (959)
T PRK13979 913 RKIKLKSKAKDKGEIEIEDIKLQNRAGRGNSLMPL 947 (959)
T ss_pred CEEEEEECCCCCCEEEHHHHHHCCCCCCCCEEEEE
T ss_conf 45999973886627871131100026787247886