HHsearch alignment for GI: 254780353 and conserved domain: PRK13979

>PRK13979 DNA topoisomerase IV subunit A; Provisional,Validated.
Probab=99.93  E-value=6.8e-24  Score=199.18  Aligned_cols=187  Identities=17%  Similarity=0.161  Sum_probs=149.0

Q ss_pred             ECCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCC-CCCCCEEEEEEE---ECCCCEEEEEECCCCEEEEEHHHHH
Q ss_conf             114781789806882787551121212344442222357-676530789998---5799859999748978996388740
Q gi|254780353|r  557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID-LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEII  632 (753)
Q Consensus       557 ~~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~-l~~~EkIv~~~~---~~~~~~lll~Tk~G~ikr~~l~~~~  632 (753)
T Consensus       753 ~~~~~~ili~~~~G~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~e~vi~~~~~~~~~e~~~il~vTe~G~GKRT~~~eyr  832 (959)
T PRK13979        753 TNSSKNLLLFSDKGKVYKIPAFMLQNIEESGINISALTGDFEKKESIINAISIFEFEEDLSIYFFSKKGLVKKTLLSEFK  832 (959)
T ss_pred             CCCCCCEEEECCCCCEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHC
T ss_conf             56631135432577233032432023355564502222121022302466520357776159999358974666567733


Q ss_pred             CCCCCCEEEEEECCCCCEEEEEE-C-CCCEEEEEECCCCEEEEEHHHCCCCCH-HHCCEEEECCCCC-EEEEEEEECCCC
Q ss_conf             23335627885368980568896-1-898099995699389955787783361-2141334218787-568999733888
Q gi|254780353|r  633 ANTRKGKTFLKVSSEEKMKLVVK-V-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGG-ISDVICFKICEG  708 (753)
Q Consensus       633 ~~~k~Gk~~ikLk~~D~li~v~~-~-~~d~iiliT~~Gk~LrF~~~eIr~~gR-gkGVk~i~Lkd~~-~~~~~~~~~~e~  708 (753)
T Consensus       833 ~~g~~~~~~k~~~~~~~~v~~~~~~~~~d~imliT~~G~~IR~~v~~I~~~GR~tqGV~li~L~~~dkVV~~~~i~~~~~  912 (959)
T PRK13979        833 GEGNSTQVYKFKHKEDELVSVDINEHEQKNILIITKKGMAIRFKSEAVNPMGKIASGVTGISLKDEDKVIFGSIIDENDT  912 (959)
T ss_pred             CCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCC
T ss_conf             46786489998844897899997048996389990798799987243470260368806897389987999999747777


Q ss_pred             CEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf             36999417756645114322544413666027552
Q gi|254780353|r  709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG  743 (753)
Q Consensus       709 ~~il~~t~~g~~k~~~~~~~~~~~RggkG~~~~k~  743 (753)
T Consensus       913 ~~~~~~~k~~~~~~~~~~~~~~q~~~g~g~~~~~~  947 (959)
T PRK13979        913 RKIKLKSKAKDKGEIEIEDIKLQNRAGRGNSLMPL  947 (959)
T ss_pred             CEEEEEECCCCCCEEEHHHHHHCCCCCCCCEEEEE
T ss_conf             45999973886627871131100026787247886