HHsearch alignment for GI: 254780353 and conserved domain: cd00187
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=100.00 E-value=0 Score=1119.54 Aligned_cols=441 Identities=46% Similarity=0.757 Sum_probs=425.6
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
Q ss_conf 10476411289704689999999868999898035405366654276887478999999961001321661326788708
Q gi|254780353|r 40 ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119 (753)
Q Consensus 40 ~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~pli~g~GnfG 119 (753)
T Consensus 2 ~RaiP~~~DGlKP~qRkiL~~~~~~~l~~~~~~~Kva~l~G~v~~~~~~HGe~sl~~aiv~mAQ~fsnn~~Ll~~~GnFG 81 (445)
T cd00187 2 GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNFG 81 (445)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 87788611488789999999999707988998515510046565046898688999999998676550575331689889
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCHHHH
Q ss_conf 86779710024689985599999984218786175216799632422312345267642665046777751677788999
Q gi|254780353|r 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 (753)
Q Consensus 120 s~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng~~GIavG~at~ipphnl~ev 199 (753)
T Consensus 82 sr~g~~aAa~RYi~trLs~~~~~lf~~~d~~~l~y~~nyDg~~~EP~~~~p~iP~iLvNGa~GIgtG~sT~IP~hNp~ei 161 (445)
T cd00187 82 SRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREV 161 (445)
T ss_pred CCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCEEEEEEECCCCCCCCHHHH
T ss_conf 99998321034565320076999864026450335358899736742205433077634661334200056788788999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCH
Q ss_conf 99999987286532013443203677887760106988999898503341599999998643788407999524200216
Q gi|254780353|r 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279 (753)
Q Consensus 200 ~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v~k 279 (753)
T Consensus 162 i~~~~~~i~~~~~~~~~l~~~~~~P~f~~~g~I~-~~~~~~~~~~tG~g~~~~rg~~~~~~~~-~~~~I~ITELP~g~~t 239 (445)
T cd00187 162 IDALRALIDNPEASIDELMEIIKGPDFPTGGIIE-GRAGIREAYETGRGRYIIRGKYEIEDDE-GRNTIEITELPYQVNK 239 (445)
T ss_pred HHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEE-CCCCCHHHEECCCCEEEEEEEEEEEECC-CCCEEEEEECCCCCCH
T ss_conf 9999877607776578873678899899994685-5654012123279738997899998048-8627999955887889
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHH
Q ss_conf 89999999986402221345776406766058898504545889999987542000012233113331268972204999
Q gi|254780353|r 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 (753)
Q Consensus 280 ~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf~~N~~~l~~~~~P~~~~l~e 359 (753)
T Consensus 240 ~~~~e~i~~lv~~kk~~~I~d~~D~st~~~v~~vI~lk~~~~~~~~~~~L~k~tkL~~s~s~Nm~~~~~~g~p~~~~~~e 319 (445)
T cd00187 240 AKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGINMVAFDPNGRPKKLNLKE 319 (445)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCHHEEECCEEEEEECCCCEEECCHHH
T ss_conf 99999999986247787466522268877247999977986668899999987150103033389993799775506999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCHHHHHHHHHHHH
Q ss_conf 9998999989999999999999999999999999986410789999752000011000000---2577577889988789
Q gi|254780353|r 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTENQVDAILNLRL 436 (753)
Q Consensus 360 il~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~~k~~L~~~---f~lse~QA~aIL~mrL 436 (753)
T Consensus 320 IL~~f~~~R~~~y~kR~~~~L~kl~~rl~il~~~~~fi~~id~ii~~ir~~~~~k~~l~~~l~~~~~~~~q~dyLL~M~L 399 (445)
T cd00187 320 ILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSSDEAKKALIEELEKLGFSEIQADAILDMRL 399 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999986499999979999999985351799999998767999999999997669
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 9998899997666789999887765442039788789999999999
Q gi|254780353|r 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 (753)
Q Consensus 437 ~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~ei 482 (753)
T Consensus 400 ~~LT~~e~~kL~~e~~~l~~ei~~L~~~l~~~~~~~~~~~~EL~ef 445 (445)
T cd00187 400 RRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF 445 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 9875899999999999999999999998679688999999998509