HHsearch alignment for GI: 254780353 and conserved domain: cd00187

>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=100.00  E-value=0  Score=1119.54  Aligned_cols=441  Identities=46%  Similarity=0.757  Sum_probs=425.6

Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
Q ss_conf             10476411289704689999999868999898035405366654276887478999999961001321661326788708
Q gi|254780353|r   40 ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG  119 (753)
Q Consensus        40 ~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~pli~g~GnfG  119 (753)
T Consensus         2 ~RaiP~~~DGlKP~qRkiL~~~~~~~l~~~~~~~Kva~l~G~v~~~~~~HGe~sl~~aiv~mAQ~fsnn~~Ll~~~GnFG   81 (445)
T cd00187           2 GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNFG   81 (445)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf             87788611488789999999999707988998515510046565046898688999999998676550575331689889


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCHHHH
Q ss_conf             86779710024689985599999984218786175216799632422312345267642665046777751677788999
Q gi|254780353|r  120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI  199 (753)
Q Consensus       120 s~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng~~GIavG~at~ipphnl~ev  199 (753)
T Consensus        82 sr~g~~aAa~RYi~trLs~~~~~lf~~~d~~~l~y~~nyDg~~~EP~~~~p~iP~iLvNGa~GIgtG~sT~IP~hNp~ei  161 (445)
T cd00187          82 SRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREV  161 (445)
T ss_pred             CCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCEEEEEEECCCCCCCCHHHH
T ss_conf             99998321034565320076999864026450335358899736742205433077634661334200056788788999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCH
Q ss_conf             99999987286532013443203677887760106988999898503341599999998643788407999524200216
Q gi|254780353|r  200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK  279 (753)
Q Consensus       200 ~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v~k  279 (753)
T Consensus       162 i~~~~~~i~~~~~~~~~l~~~~~~P~f~~~g~I~-~~~~~~~~~~tG~g~~~~rg~~~~~~~~-~~~~I~ITELP~g~~t  239 (445)
T cd00187         162 IDALRALIDNPEASIDELMEIIKGPDFPTGGIIE-GRAGIREAYETGRGRYIIRGKYEIEDDE-GRNTIEITELPYQVNK  239 (445)
T ss_pred             HHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEE-CCCCCHHHEECCCCEEEEEEEEEEEECC-CCCEEEEEECCCCCCH
T ss_conf             9999877607776578873678899899994685-5654012123279738997899998048-8627999955887889


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHH
Q ss_conf             89999999986402221345776406766058898504545889999987542000012233113331268972204999
Q gi|254780353|r  280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG  359 (753)
Q Consensus       280 ~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf~~N~~~l~~~~~P~~~~l~e  359 (753)
T Consensus       240 ~~~~e~i~~lv~~kk~~~I~d~~D~st~~~v~~vI~lk~~~~~~~~~~~L~k~tkL~~s~s~Nm~~~~~~g~p~~~~~~e  319 (445)
T cd00187         240 AKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGINMVAFDPNGRPKKLNLKE  319 (445)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCHHEEECCEEEEEECCCCEEECCHHH
T ss_conf             99999999986247787466522268877247999977986668899999987150103033389993799775506999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCHHHHHHHHHHHH
Q ss_conf             9998999989999999999999999999999999986410789999752000011000000---2577577889988789
Q gi|254780353|r  360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---FSLTENQVDAILNLRL  436 (753)
Q Consensus       360 il~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~~k~~L~~~---f~lse~QA~aIL~mrL  436 (753)
T Consensus       320 IL~~f~~~R~~~y~kR~~~~L~kl~~rl~il~~~~~fi~~id~ii~~ir~~~~~k~~l~~~l~~~~~~~~q~dyLL~M~L  399 (445)
T cd00187         320 ILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSSDEAKKALIEELEKLGFSEIQADAILDMRL  399 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999986499999979999999985351799999998767999999999997669


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             9998899997666789999887765442039788789999999999
Q gi|254780353|r  437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV  482 (753)
Q Consensus       437 ~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~ei  482 (753)
T Consensus       400 ~~LT~~e~~kL~~e~~~l~~ei~~L~~~l~~~~~~~~~~~~EL~ef  445 (445)
T cd00187         400 RRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF  445 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf             9875899999999999999999999998679688999999998509