HHsearch alignment for GI: 254780353 and conserved domain: smart00434
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=100.00 E-value=0 Score=1146.52 Aligned_cols=437 Identities=46% Similarity=0.765 Sum_probs=417.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 31999999888888899985104764112897046899999998689998980354053666542768874789999999
Q gi|254780353|r 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99 (753)
Q Consensus 20 ~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v 99 (753)
T Consensus 1 i~i~d~~~~~~~~ys~~vi~~RaiP~~~DGLKPvqRriLy~~~~~~l~~~~~~~k~a~~~g~~~~~YHpHGd~s~~~aiv 80 (445)
T smart00434 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDAIV 80 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEHHCCCCCCCHHHHHHHHH
T ss_conf 97799998999998899876034884002787899999999997389889862788888861001788886889999999
Q ss_pred HHCCHHHCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHC
Q ss_conf 6100132166132678870886-779710024689985599999984218786175216799632422312345267642
Q gi|254780353|r 100 RLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178 (753)
Q Consensus 100 ~maq~~~~~~pli~g~GnfGs~-~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~N 178 (753)
T Consensus 81 ~mAQ~fs~n~~Ll~~~GnFGs~~~G~~aAa~RYie~rLs~~~~~~~~~~d~~~~~~~~n~Dg~~~EP~~~~p~iP~lLvN 160 (445)
T smart00434 81 RMAQDFSNNYPLLDGQGNFGSRLDGDDAAAMRYTETRLSPLARELLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVN 160 (445)
T ss_pred HHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHCCCCCCHHEEE
T ss_conf 98474340554230588867889998203367888637799999876438780755438898726751027766730030
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 66504677775167778899999999987286532013443203677887760106988999898503341599999998
Q gi|254780353|r 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 (753)
Q Consensus 179 g~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~ 258 (753)
T Consensus 161 Gs~GIavG~sT~IPphN~~evi~a~~~~l~~~~~~~~~l~~~p~~pdF~gg~~~~------------g~g~~~~rg~~~~ 228 (445)
T smart00434 161 GSSGIAVGMATNIPPHNLREVIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEII------------GPGSYVVRGKIEI 228 (445)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEE------------CCCEEEEEEEEEE
T ss_conf 7874254230477887889999988766518878889996388428999816993------------3986999999999
Q ss_pred EECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 64378840799952420021689999999986402221345776406-76605889850454588999998754200001
Q gi|254780353|r 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMET 337 (753)
Q Consensus 259 e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeS-d~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~ 337 (753)
T Consensus 229 ~~---~~~~i~ItELP~g~~t~~~~e~i~~lv~~~ki~~i~~~~des~~~~~vrivI~lk~~~~~~~~~~~L~k~tkL~~ 305 (445)
T smart00434 229 ED---GRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKRGAMAEVVLNGLYKLTKLQS 305 (445)
T ss_pred EC---CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHE
T ss_conf 87---962799994687674899999999985135666501035432887752699998899898999999998720143
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCC----
Q ss_conf 22331133312689722049999998999989999999999999999-9999999999864107899997520000----
Q gi|254780353|r 338 RFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID-RRVEILKGLLIAYLNIDEIIAIIRNEDK---- 412 (753)
Q Consensus 338 sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~-~RlhIleGl~~a~~~ID~vI~iIR~s~~---- 412 (753)
T Consensus 306 s~s~N~~~l~~~g~p~~~~~~eIL~~f~~~R~~~~~kR~~~~L~kl~~~r~~i~~~~fi~~~~~d~ii~~~r~~~~~~~~ 385 (445)
T smart00434 306 TFSINMLALFDNGKPKKYNLKEILKEFLDHRLEVYTRRKEYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKE 385 (445)
T ss_pred ECCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH
T ss_conf 41517999976993578525999999999999999999999999999999999886999997346577655368726999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 11000000257757788998878999988999976667899998877654420397887
Q gi|254780353|r 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 (753)
Q Consensus 413 ~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l 471 (753)
T Consensus 386 lk~~l~~~~~~s~~q~~yLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l~~~~wl 444 (445)
T smart00434 386 AKELLMERFELSEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILASELWL 444 (445)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
T ss_conf 99818866799999999999668998728899999999999999999998468696544