HHsearch results for GI: 254780353 and protein with PDBid: 1zvu_A
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli}
Probab=100.00 E-value=0 Score=1690.12 Aligned_cols=699 Identities=37% Similarity=0.691 Sum_probs=653.5
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCC
Q ss_conf 51047641128970468999999986899989803540536665427688747899999996100132166132678870
Q gi|254780353|r 39 KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118 (753)
Q Consensus 39 ~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~pli~g~Gnf 118 (753)
.+|||||+|||||||||||||||+++|+.++++|+||||+||+|||+||||||+|+|||||||||+|+|||||+||||||
T Consensus 1 l~RalP~~~DGlKpvqRril~~m~~~~~~~~~~~~k~a~~vg~v~g~yhpHGd~s~~~a~v~maq~~~~~~pl~~~~Gnf 80 (716)
T 1zvu_A 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 80 (716)
T ss_dssp -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 98778972238857888999999862898999854435479887418889759999999999835323046216478987
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCHH
Q ss_conf 886779-7100246899855999999842187861752167996324223123452676426650467777516777889
Q gi|254780353|r 119 GNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 (753)
Q Consensus 119 Gs~~~d-~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng~~GIavG~at~ipphnl~ 197 (753)
||++|+ +||||||||||||++++.||+|+|++||||+|||||+++||+|||++|||||||||+|||||||||||||||+
T Consensus 81 Gs~~~~~~~Aa~RY~e~rls~~~~~~~~~~~~~~~~~~~n~Dg~~~EP~~lp~~~P~lLvNG~~GIavG~aT~IpphNl~ 160 (716)
T 1zvu_A 81 GAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 160 (716)
T ss_dssp SSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHH
T ss_conf 89999965465667873557999998764065744766388987458730266564776357765456765277663368
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 99999999872865320134432036778877601069889998985033415999999986437884079995242002
Q gi|254780353|r 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV 277 (753)
Q Consensus 198 ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v 277 (753)
||++||+++|++|++++++||++||||||||||.|+.+++++.++|+||||+|++||+|++|+ ++|||||||||+
T Consensus 161 ev~~a~~~~i~~~~~~~~~l~~~i~gPdfptgg~i~~~~~~i~~~y~tG~G~i~~r~~~~~e~-----~~ivItEiPy~~ 235 (716)
T 1zvu_A 161 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV 235 (716)
T ss_dssp HHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-----TEEEEEECCTTC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEEEEEEEECCC-----CEEEEEECCCCC
T ss_conf 888778998629987889996137789989856697684888876526985999999982448-----749999788545
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCE-EE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 16899999999864022213457764067660-58-89850454588999998754200001223311333126897220
Q gi|254780353|r 278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 (753)
Q Consensus 278 ~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~-~~-vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf~~N~~~l~~~~~P~~~ 355 (753)
|+++++|+|++++++||+++|+|+|||||+++ ++ |+++++++++++.+|++|||+|+||+||++||+++..+++|+++
T Consensus 236 ~~~~lie~i~~lv~~kki~~i~d~~DeSd~~~~~~vv~~~~~~~~~~e~vl~~Lyk~T~Lq~s~~~N~~~i~~~g~P~~~ 315 (716)
T 1zvu_A 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK 315 (716)
T ss_dssp CHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEEC
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCCCCC
T ss_conf 67889999998876489662000111356667579995055568899999999998442344313045788309964505
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 49999998999989999999999999999999999999986410789999752000011000000257757788998878
Q gi|254780353|r 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 (753)
Q Consensus 356 ~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~~k~~L~~~f~lse~QA~aIL~mr 435 (753)
+|+++|++|++||.++++||++|+|+++++|+||||||++|+.+||+||++||+|++|+.+||++|+|||.||+|||+||
T Consensus 316 ~l~eiL~~f~~~R~evi~rR~~~~L~k~~~rl~ilegl~~a~~~iD~vI~iIr~s~~~~~~l~~~f~~se~Qa~aIL~mr 395 (716)
T 1zvu_A 316 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 395 (716)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHHHSTTCCTTHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 79999999999999999999999999999999999829999983999999996588558999985599989999999757
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCC
Q ss_conf 99998899997666789999887765442039788789999999999874177433455542000011000000110024
Q gi|254780353|r 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 (753)
Q Consensus 436 L~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI 515 (753)
|||||+||++|+++|+++|.++|++|++||+|+++++++|++||.+++++||++ |||.+.+. +.......+++|
T Consensus 396 L~~Lt~le~~kl~~E~~~l~~~i~~l~~IL~s~~~l~~~I~~EL~elkkkfgd~-----RRT~i~~~-~~~~~~~~edli 469 (716)
T 1zvu_A 396 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQER-EEAKAMSEHDML 469 (716)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-----CCSCBCCC-CCCCCCCSSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCC-CCCCCCCHHHHC
T ss_conf 878778889999999999999999997420488898999998999999971898-----87422145-322457887807
Q ss_pred CCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCC
Q ss_conf 56670599871010202565544553223455555401211114781789806882787551121212344442222357
Q gi|254780353|r 516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 (753)
Q Consensus 516 ~~E~v~V~LS~~GyIKr~k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~ 595 (753)
++|+++|++|++||||+++++++..++.++|++|.+.+++.|+|||+++|||+.|++|++++|+||+++++|+|+.++++
T Consensus 470 ~~e~v~V~ls~~GyIkr~~~~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~fT~~Grvy~l~v~~lP~~~~kG~pi~~~l~ 549 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT 549 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTSC
T ss_pred CCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 67650688636876862367765544542323665347899715764068835882799741457677678865434104
Q ss_pred CCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCCEEEEEECCC--CEEEEEECCCCEEEE
Q ss_conf 676530789998579985999974897899638874023335627885368980568896189--809999569938995
Q gi|254780353|r 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIF 673 (753)
Q Consensus 596 l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~~--d~iiliT~~Gk~LrF 673 (753)
++++|+|++++.++++.+++++|++|++|++.+++|.+++++|+.+++|+++|+++.+..+++ |+++++|++|++|||
T Consensus 550 l~~~E~I~~i~~~~~d~~lll~T~~G~~K~~~l~~~~~~~k~Gk~aikLke~Deli~~~~~~~~~d~vl~vT~~Gk~lrF 629 (716)
T 1zvu_A 550 LPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 629 (716)
T ss_dssp CCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEEHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf 79998489987327886799997589589985136105475773778768998899899965999889998889829997
Q ss_pred EHHHCCCCCHHHCCEEEECCCC-------CEEEEEEEECCCCCEEEEECCCCCCC-CCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 5787783361214133421878-------75689997338883699941775664-511432254441366602755267
Q gi|254780353|r 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGGVGSLVPKGFP 745 (753)
Q Consensus 674 ~~~eIr~~gRgkGVk~i~Lkd~-------~~~~~~~~~~~e~~~il~~t~~g~~k-~~~~~~~~~~~RggkG~~~~k~~~ 745 (753)
++++||.||||+||++|+|+++ .++.+.++...+ . ++..+++++++ +..+.+++.++||++|++++ .++
T Consensus 630 ~~~ev~~~grg~GVkgikL~~~~~~~~~d~v~~~~v~~~~~-~-llv~t~~g~~k~~~~~~~~~~~~Rg~kG~~~~-~~~ 706 (716)
T 1zvu_A 630 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS-T-LTIHVGKRKIKLRPEELQKVTGERGRRGTLMR-GLQ 706 (716)
T ss_dssp ESTTSCBCSSBSCEESSCCCHHHHHTTSSCEEEEEEECSSC-C-EEEEETTEEEEECHHHHTTSBCCTTSCCEECT-TCC
T ss_pred EHHHCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCC-E-EEEEECCCEEEECHHHHHHHCCCCCCCCCCCC-CCC
T ss_conf 88998865754771207306555556785599999977998-6-99998898078587883020178788887997-776
Q ss_pred CCCCEE
Q ss_conf 768610
Q gi|254780353|r 746 RSGKFL 751 (753)
Q Consensus 746 K~gklV 751 (753)
|.+++-
T Consensus 707 k~D~~e 712 (716)
T 1zvu_A 707 RIDRVE 712 (716)
T ss_dssp SCCEEE
T ss_pred CCCCEE
T ss_conf 678378