HHsearch results for GI: 254780353 and protein with PDBid: 1zvu_A

>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli}
Probab=100.00  E-value=0  Score=1690.12  Aligned_cols=699  Identities=37%  Similarity=0.691  Sum_probs=653.5

Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCC
Q ss_conf             51047641128970468999999986899989803540536665427688747899999996100132166132678870
Q gi|254780353|r   39 KERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF  118 (753)
Q Consensus        39 ~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~pli~g~Gnf  118 (753)
                      .+|||||+|||||||||||||||+++|+.++++|+||||+||+|||+||||||+|+|||||||||+|+|||||+||||||
T Consensus         1 l~RalP~~~DGlKpvqRril~~m~~~~~~~~~~~~k~a~~vg~v~g~yhpHGd~s~~~a~v~maq~~~~~~pl~~~~Gnf   80 (716)
T 1zvu_A            1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW   80 (716)
T ss_dssp             -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf             98778972238857888999999862898999854435479887418889759999999999835323046216478987


Q ss_pred             CCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCHH
Q ss_conf             886779-7100246899855999999842187861752167996324223123452676426650467777516777889
Q gi|254780353|r  119 GNIDGD-SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ  197 (753)
Q Consensus       119 Gs~~~d-~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng~~GIavG~at~ipphnl~  197 (753)
                      ||++|+ +||||||||||||++++.||+|+|++||||+|||||+++||+|||++|||||||||+|||||||||||||||+
T Consensus        81 Gs~~~~~~~Aa~RY~e~rls~~~~~~~~~~~~~~~~~~~n~Dg~~~EP~~lp~~~P~lLvNG~~GIavG~aT~IpphNl~  160 (716)
T 1zvu_A           81 GAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR  160 (716)
T ss_dssp             SSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHH
T ss_conf             89999965465667873557999998764065744766388987458730266564776357765456765277663368


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf             99999999872865320134432036778877601069889998985033415999999986437884079995242002
Q gi|254780353|r  198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV  277 (753)
Q Consensus       198 ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e~~~~~~~~ivIteiPy~v  277 (753)
                      ||++||+++|++|++++++||++||||||||||.|+.+++++.++|+||||+|++||+|++|+     ++|||||||||+
T Consensus       161 ev~~a~~~~i~~~~~~~~~l~~~i~gPdfptgg~i~~~~~~i~~~y~tG~G~i~~r~~~~~e~-----~~ivItEiPy~~  235 (716)
T 1zvu_A          161 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV  235 (716)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-----TEEEEEECCTTC
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEEEEEEEECCC-----CEEEEEECCCCC
T ss_conf             888778998629987889996137789989856697684888876526985999999982448-----749999788545


Q ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCE-EE-EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf             16899999999864022213457764067660-58-89850454588999998754200001223311333126897220
Q gi|254780353|r  278 QKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-RI-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM  355 (753)
Q Consensus       278 ~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~-~~-vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf~~N~~~l~~~~~P~~~  355 (753)
                      |+++++|+|++++++||+++|+|+|||||+++ ++ |+++++++++++.+|++|||+|+||+||++||+++..+++|+++
T Consensus       236 ~~~~lie~i~~lv~~kki~~i~d~~DeSd~~~~~~vv~~~~~~~~~~e~vl~~Lyk~T~Lq~s~~~N~~~i~~~g~P~~~  315 (716)
T 1zvu_A          236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK  315 (716)
T ss_dssp             CHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCCCCC
T ss_conf             67889999998876489662000111356667579995055568899999999998442344313045788309964505


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             49999998999989999999999999999999999999986410789999752000011000000257757788998878
Q gi|254780353|r  356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR  435 (753)
Q Consensus       356 ~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~~k~~L~~~f~lse~QA~aIL~mr  435 (753)
                      +|+++|++|++||.++++||++|+|+++++|+||||||++|+.+||+||++||+|++|+.+||++|+|||.||+|||+||
T Consensus       316 ~l~eiL~~f~~~R~evi~rR~~~~L~k~~~rl~ilegl~~a~~~iD~vI~iIr~s~~~~~~l~~~f~~se~Qa~aIL~mr  395 (716)
T 1zvu_A          316 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK  395 (716)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHHHHHHHSTTCCTTHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             79999999999999999999999999999999999829999983999999996588558999985599989999999757


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCC
Q ss_conf             99998899997666789999887765442039788789999999999874177433455542000011000000110024
Q gi|254780353|r  436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI  515 (753)
Q Consensus       436 L~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~~RRT~iie~~~~~~~~~~EdlI  515 (753)
                      |||||+||++|+++|+++|.++|++|++||+|+++++++|++||.+++++||++     |||.+.+. +.......+++|
T Consensus       396 L~~Lt~le~~kl~~E~~~l~~~i~~l~~IL~s~~~l~~~I~~EL~elkkkfgd~-----RRT~i~~~-~~~~~~~~edli  469 (716)
T 1zvu_A          396 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQER-EEAKAMSEHDML  469 (716)
T ss_dssp             GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-----CCSCBCCC-CCCCCCCSSTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCC-CCCCCCCHHHHC
T ss_conf             878778889999999999999999997420488898999998999999971898-----87422145-322457887807


Q ss_pred             CCCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCC
Q ss_conf             56670599871010202565544553223455555401211114781789806882787551121212344442222357
Q gi|254780353|r  516 EKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID  595 (753)
Q Consensus       516 ~~E~v~V~LS~~GyIKr~k~~~~~~~~~~~KegD~l~~~~~~~t~d~LLffTs~GkvY~l~a~~Ips~~~kG~pI~~ll~  595 (753)
                      ++|+++|++|++||||+++++++..++.++|++|.+.+++.|+|||+++|||+.|++|++++|+||+++++|+|+.++++
T Consensus       470 ~~e~v~V~ls~~GyIkr~~~~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~fT~~Grvy~l~v~~lP~~~~kG~pi~~~l~  549 (716)
T 1zvu_A          470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT  549 (716)
T ss_dssp             CCCCCCEEEETTTEEEECCC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTSC
T ss_pred             CCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             67650688636876862367765544542323665347899715764068835882799741457677678865434104


Q ss_pred             CCCCCEEEEEEEECCCCEEEEEECCCCEEEEEHHHHHCCCCCCEEEEEECCCCCEEEEEECCC--CEEEEEECCCCEEEE
Q ss_conf             676530789998579985999974897899638874023335627885368980568896189--809999569938995
Q gi|254780353|r  596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIF  673 (753)
Q Consensus       596 l~~~EkIv~~~~~~~~~~lll~Tk~G~ikr~~l~~~~~~~k~Gk~~ikLk~~D~li~v~~~~~--d~iiliT~~Gk~LrF  673 (753)
                      ++++|+|++++.++++.+++++|++|++|++.+++|.+++++|+.+++|+++|+++.+..+++  |+++++|++|++|||
T Consensus       550 l~~~E~I~~i~~~~~d~~lll~T~~G~~K~~~l~~~~~~~k~Gk~aikLke~Deli~~~~~~~~~d~vl~vT~~Gk~lrF  629 (716)
T 1zvu_A          550 LPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF  629 (716)
T ss_dssp             CCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEEECCCCCEEEEEECCCCEEEEEHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf             79998489987327886799997589589985136105475773778768998899899965999889998889829997


Q ss_pred             EHHHCCCCCHHHCCEEEECCCC-------CEEEEEEEECCCCCEEEEECCCCCCC-CCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             5787783361214133421878-------75689997338883699941775664-511432254441366602755267
Q gi|254780353|r  674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNR-SENDLLGWLGKRGGVGSLVPKGFP  745 (753)
Q Consensus       674 ~~~eIr~~gRgkGVk~i~Lkd~-------~~~~~~~~~~~e~~~il~~t~~g~~k-~~~~~~~~~~~RggkG~~~~k~~~  745 (753)
                      ++++||.||||+||++|+|+++       .++.+.++...+ . ++..+++++++ +..+.+++.++||++|++++ .++
T Consensus       630 ~~~ev~~~grg~GVkgikL~~~~~~~~~d~v~~~~v~~~~~-~-llv~t~~g~~k~~~~~~~~~~~~Rg~kG~~~~-~~~  706 (716)
T 1zvu_A          630 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS-T-LTIHVGKRKIKLRPEELQKVTGERGRRGTLMR-GLQ  706 (716)
T ss_dssp             ESTTSCBCSSBSCEESSCCCHHHHHTTSSCEEEEEEECSSC-C-EEEEETTEEEEECHHHHTTSBCCTTSCCEECT-TCC
T ss_pred             EHHHCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEECCCC-E-EEEEECCCEEEECHHHHHHHCCCCCCCCCCCC-CCC
T ss_conf             88998865754771207306555556785599999977998-6-99998898078587883020178788887997-776


Q ss_pred             CCCCEE
Q ss_conf             768610
Q gi|254780353|r  746 RSGKFL  751 (753)
Q Consensus       746 K~gklV  751 (753)
                      |.+++-
T Consensus       707 k~D~~e  712 (716)
T 1zvu_A          707 RIDRVE  712 (716)
T ss_dssp             SCCEEE
T ss_pred             CCCCEE
T ss_conf             678378