HHsearch results for GI: 254780353 and protein with PDBid: 2inr_A
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=100.00 E-value=0 Score=1204.36 Aligned_cols=481 Identities=37% Similarity=0.644 Sum_probs=467.5
Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHH
Q ss_conf 42456653199999988888889998510476411289704689999999868999898035405366654276887478
Q gi|254780353|r 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQ 92 (753)
Q Consensus 13 ~~~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~ 92 (753)
..+.|.+++++++|+++|++||||||.+|||||++||||||||||||||+++|++++++|+|||++||+|||+||||||+
T Consensus 24 ~~~~i~~~~~~~~~~~~~~~Ya~~vi~~RaiP~~~DGLKP~qRkIL~~~~~~~l~~~~~~~K~A~~vg~v~~~YHpHGe~ 103 (514)
T 2inr_A 24 VSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDS 103 (514)
T ss_dssp -----------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHHHHHTCC---C
T ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCHH
T ss_conf 02641534499999999998788987730277422488489999999999707888988210078999988653798488
Q ss_pred HHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 99999996100132166132678870886779710024689985599999984218786175216799632422312345
Q gi|254780353|r 93 SVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKF 172 (753)
Q Consensus 93 s~y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~ 172 (753)
|+|+|||||||+|++++||++|||||||++|++||||||||||||++|..||.|+|+++|+|+|||||+.+||+|||++|
T Consensus 104 Sl~~tiv~mAQ~f~~~~~L~~~~G~fGs~~~~~~Aa~RYi~trLs~~a~~if~~~d~~~l~~~~n~Dg~~~EP~~y~pii 183 (514)
T 2inr_A 104 SVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 183 (514)
T ss_dssp HHHHHHHHTTCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECTTHHHHSTTTTSSCSCEEECTTSSSEEESSCCCSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 99999999855400565351578999999998511477999887689999976437574267668899731774025767
Q ss_pred CHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 26764266504677775167778899999999987286532013443203677887760106988999898503341599
Q gi|254780353|r 173 PNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 (753)
Q Consensus 173 P~lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~ 252 (753)
||||||||+||||||||+||||||.|||+||+++|++|++++++|++++|||||||||.|. +.+|+.++|+||+|+|++
T Consensus 184 P~vLvNGs~GIgtG~sT~IPphNp~evi~~~~~~l~~~~~~~~el~~~~~GPdFptGg~I~-~~~~~~~~y~~G~G~i~~ 262 (514)
T 2inr_A 184 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQ-GIDGIKKAYESGKGRIIV 262 (514)
T ss_dssp CHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEE-CHHHHHHHHHHSEEEEEE
T ss_pred CHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEE-CCCHHHHHHHCCCEEEEE
T ss_conf 3898736776223200377998999999999999649999879996207799899984687-761178886268369998
Q ss_pred EEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99999864378840799952420021689999999986402221345776406766058898504545889999987542
Q gi|254780353|r 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFML 332 (753)
Q Consensus 253 r~k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~ 332 (753)
|+++++|+.+.|+++|+||||||++|+++++++|+++++++|+++|+|++|+||+++.++++..+++++++.++++|||+
T Consensus 263 ~~~~~ie~~~~g~~~i~ItElP~~~~~~~~~~~i~~l~~~~ki~~i~d~~d~s~~~~i~ivi~~~~~~~~~~~~~~L~k~ 342 (514)
T 2inr_A 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKN 342 (514)
T ss_dssp ECEEEECC----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTTS
T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 44899997379826899984355456778999999998559878700303246887329999805762078888899850
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 0000122331133312689722049999998999989999999999999999999999999986410789999752000-
Q gi|254780353|r 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED- 411 (753)
Q Consensus 333 T~Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~- 411 (753)
|+||+||++|++++.+ +.|+++++.+||+.|++||.++++||++|+|+++++|+|+++|++.++.++|++|++||+|+
T Consensus 343 t~l~st~~~n~~~l~~-~~pk~~~l~eIL~~f~~~R~~~y~kR~~~~L~k~e~rl~il~~~i~~i~~id~vi~iIr~sk~ 421 (514)
T 2inr_A 343 SDLQISYNFNMVAISD-GRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKN 421 (514)
T ss_dssp STTEEEEEEECEEEET-TEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCS
T ss_pred CCCCCCCCEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCC
T ss_conf 6310122236898339-914667789999999999999999999999999999997753231277542214442221799
Q ss_pred --CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --011000000257757788998878999988999976667899998877654420397887899999999998741774
Q gi|254780353|r 412 --KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 (753)
Q Consensus 412 --~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~ 489 (753)
+++..|++.|+|||.||+|||+|||++||+++++||++|+++|++++++|+++|+|++.+|+++++||.+++++||++
T Consensus 422 ~~e~~~~L~k~f~~se~qadyLL~M~L~~LT~eei~kL~~E~~el~~ei~eL~~iL~s~~~l~~~i~~EL~el~kky~~~ 501 (514)
T 2inr_A 422 KRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 501 (514)
T ss_dssp HHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999998874599999999998278998706899999999999999999999986899999999999999999983898
Q ss_pred CCCCCCCCCEE
Q ss_conf 33455542000
Q gi|254780353|r 490 TDLGRRRTTFC 500 (753)
Q Consensus 490 ~~~~~RRT~ii 500 (753)
|||.|.
T Consensus 502 -----RrT~I~ 507 (514)
T 2inr_A 502 -----RLSLIE 507 (514)
T ss_dssp -----CCCEEE
T ss_pred -----CCCCCC
T ss_conf -----861342