HHsearch results for GI: 254780353 and protein with PDBid: 2nov_A
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
Probab=100.00 E-value=0 Score=1147.62 Aligned_cols=483 Identities=35% Similarity=0.669 Sum_probs=466.5
Q ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHH
Q ss_conf 45665319999998888888999851047641128970468999999986899989803540536665427688747899
Q gi|254780353|r 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 (753)
Q Consensus 15 ~~i~~~~i~~~~~~~y~~ya~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~ 94 (753)
.+|.+++|++++.++|++||||||.+|||||++||||||||||||||++++++++++|.|||++||+|||+||||||+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~ya~~~i~~RaiP~~~DGLKp~qRkiL~~~~~~~l~~~~~~~KvA~~~g~v~~~yHpHGe~Sl 81 (496)
T 2nov_A 2 SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSI 81 (496)
T ss_dssp ---------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCSTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH
T ss_conf 98723669999999999888898661148842148848998999998862788898802426379988741588778899
Q ss_pred HHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCH
Q ss_conf 99999610013216613267887088677971002468998559999998421878617521679963242231234526
Q gi|254780353|r 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174 (753)
Q Consensus 95 y~a~v~maq~~~~~~pli~g~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~ 174 (753)
|+|||+|||+|++|+||++|||||||++|++|||||||||||++++..+|.++|.++|+|.+||||+..||++||++||+
T Consensus 82 ~~tiv~mAq~fsnn~~Ll~~~G~FGsr~~~~~Aa~RYi~~~l~~~~~~lf~~~d~~~~~~~~~~dg~~~EP~~y~piiP~ 161 (496)
T 2nov_A 82 YDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPN 161 (496)
T ss_dssp HHHHHHTTCTTTSSSCSEEEESCSCCSSSCCCCCTTTCEEEECHHHHTTSTTCCCCCSCEEECSSSSSEEESSCCCSSCH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCH
T ss_conf 99999997874247644037788788899704468889998888798752564423234655888862277000465758
Q ss_pred HHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE
Q ss_conf 76426650467777516777889999999998728653201344320367788776010698899989850334159999
Q gi|254780353|r 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 (753)
Q Consensus 175 lL~Ng~~GIavG~at~ipphnl~ev~~a~~~~i~~~~~~~~~l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~ 254 (753)
||||||+||||||||+||||||.|||+|++++|++|++++++|++++|||||||||+| .+.+++.++|++|+|+|++||
T Consensus 162 vLvNG~~GIgtG~sT~IP~~Np~evi~~~~~~l~~~~~~~~~l~~~~~~pdfptGg~i-~~~~~~~~~y~~g~G~i~~~~ 240 (496)
T 2nov_A 162 LLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRS 240 (496)
T ss_dssp HHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEE-CCHHHHHHHHHHSEEECCEEC
T ss_pred HHHCCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEE-ECCHHHHHHHHCCCCEEEEEE
T ss_conf 8754777624200105777788999999999850999998999863788989987455-471667999856994399966
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 99986437884079995242002168999999998640222134577640676605889850454588999998754200
Q gi|254780353|r 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334 (753)
Q Consensus 255 k~~~e~~~~~~~~ivIteiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeSd~~~~~vi~~~~r~~~~~~vl~~Lyk~T~ 334 (753)
+|++|....|+++|+||||||++|+++++++|++|++++|+++|+|++|+|++++.++++.++++.+++.++++|||+|+
T Consensus 241 ~~~~e~~~~~~~~i~ITELP~g~~t~~~~e~l~~l~~~~ki~~i~d~~Des~~~~v~i~I~lk~~~~~~~~~~~l~k~t~ 320 (496)
T 2nov_A 241 KTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTD 320 (496)
T ss_dssp EEEEEECSTTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHHHHSST
T ss_pred EEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCEE
T ss_conf 78999726983489999706656577899999987643876770121444788850899981532246778999986101
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf 00122331133312689722049999998999989999999999999999999999999986410789999752000---
Q gi|254780353|r 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--- 411 (753)
Q Consensus 335 Lq~sf~~N~~~l~~~~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~--- 411 (753)
||++|++||+++. ++.|++++++|||+.|++||.++++||.+|+|+++++|+|+|+|+++++.+||++|.+||+++
T Consensus 321 l~st~~~n~~~~~-~~~pk~~sv~eIL~~f~~~R~~~~~rR~~~~l~~~e~rl~il~~~~~fi~~i~~~i~~ir~~k~~~ 399 (496)
T 2nov_A 321 LQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKA 399 (496)
T ss_dssp TEECCEEECEEEE-TTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSHH
T ss_pred EEEEHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 0010565555553-058840569999999899999999999999999999999998628999985656788887179879
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 01100000025775778899887899998899997666789999887765442039788789999999999874177433
Q gi|254780353|r 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 (753)
Q Consensus 412 ~~k~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~ 491 (753)
+++..|++.|++||.||+|||+|||++||++|++|+++|+++|++++++|+++|+|++.+++++++||.+++++||++
T Consensus 400 ~~~~~l~~~f~lse~q~dyLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~L~~il~~~~~l~~~~~~eL~~l~~k~~~~-- 477 (496)
T 2nov_A 400 DAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-- 477 (496)
T ss_dssp HHHSSCCC-CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf 999999986599999999999758999758999999999999999999999996899999999999999999983898--
Q ss_pred CCCCCCCEEECCC
Q ss_conf 4555420000110
Q gi|254780353|r 492 LGRRRTTFCEVSR 504 (753)
Q Consensus 492 ~~~RRT~iie~~~ 504 (753)
|||.|.+..+
T Consensus 478 ---RrT~i~~~~~ 487 (496)
T 2nov_A 478 ---RLSSLEDTAK 487 (496)
T ss_dssp ---CCSBC-----
T ss_pred ---CCCCCCCCHH
T ss_conf ---8860748676