HHsearch results for GI: 254780353 and protein with PDBid: 3ilw_A
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB: 3ifz_A*
Probab=100.00 E-value=0 Score=1137.15 Aligned_cols=459 Identities=39% Similarity=0.679 Sum_probs=441.7
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCC
Q ss_conf 99985104764112897046899999998689998980354053666542768874789999999610013216613267
Q gi|254780353|r 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114 (753)
Q Consensus 35 ~~vi~~Ralpd~~DGlKpvqRril~~m~~~~~~~~~~~~K~ar~vg~v~gkyhPHGd~s~y~a~v~maq~~~~~~pli~g 114 (753)
-|||++|||||++||||||||||||||+++++.++.++.|||++||+|||+||||||+|+|+|||+|||+||||+||++|
T Consensus 3 ~svi~~RaiP~~~DGLKp~qRkil~~~~~~~l~~~~k~~k~a~~v~e~~~~YHpHGe~Sl~~tiv~mAQ~fsnn~~Ll~~ 82 (470)
T 3ilw_A 3 ASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDG 82 (470)
T ss_dssp ----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHHHHHTCCCCSTHHHHHHHHHHCTTTCSSCSEEE
T ss_pred CCEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 63120044775213885899999999997289889861011568997501468886889999999985610204634147
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCC
Q ss_conf 88708867797100246899855999999842187861752167996324223123452676426650467777516777
Q gi|254780353|r 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 (753)
Q Consensus 115 ~GnfGs~~~d~~Aa~RYte~rl~~~~~~ll~di~~~~v~~~~n~D~~~~EP~~lp~~~P~lL~Ng~~GIavG~at~ipph 194 (753)
||||||++||+||||||||||||++|..||.++|.++|+|++||||++.||+|||++||+||||||+||||||||+||||
T Consensus 83 ~G~FGs~~g~~aAa~RYi~t~Ls~~~~~if~~~d~~~l~~~~n~Dg~~~EP~~y~piiP~vLvNG~~GIgtG~sT~IP~~ 162 (470)
T 3ilw_A 83 QGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 162 (470)
T ss_dssp ESCCCCSSSCCCCCTTSCEEEECHHHHHHHTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTCSCEECCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCC
T ss_conf 89999999997644136887441899999734320410467565786458720164362998637775253000367760
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf 8899999999987286532013----443203677887760106988999898503341599999998643788407999
Q gi|254780353|r 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVV 270 (753)
Q Consensus 195 nl~ev~~a~~~~i~~~~~~~~~----l~~~i~gPDFPTGG~i~~~~~~i~~~y~tG~G~i~~r~k~~~e~~~~~~~~ivI 270 (753)
||.|||+||+++|++|+++..+ ++++++||||||||.|+ |..|..++|+||+|++++|++|++|+...|+++++|
T Consensus 163 Np~evi~~~~~~l~~~~~~~~~~~~~~~~~~~gPdfp~g~~i~-g~~~~~~~y~~G~g~~~~~~~~~iee~~~gk~~i~I 241 (470)
T 3ilw_A 163 NLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIV-GSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVI 241 (470)
T ss_dssp CHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEE-CSHHHHHHHHHSEEEEEEECEEEEEECTTCCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEE-CCCCHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEE
T ss_conf 1567999999986477421035589986157789989876676-662446674259824999879999975798258999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC-CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 52420021689999999986402221345776406-76605889850454588999998754200001223311333126
Q gi|254780353|r 271 TEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349 (753)
Q Consensus 271 teiPy~v~k~~~ie~I~~lv~~~ki~gi~dirDeS-d~~~~~vi~~~~r~~~~~~vl~~Lyk~T~Lq~sf~~N~~~l~~~ 349 (753)
|||||++++++++++|++++.++|+++|+|++|+| ++.+.++++..+++++++.+++.|||+|+||+||++||+||.++
T Consensus 242 tElP~~~~~~~~~e~i~~~~~~kk~~~i~di~de~s~~~~vrivI~lk~~~~~~~~~~~L~k~tkL~ts~s~n~~~l~d~ 321 (470)
T 3ilw_A 242 TELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDG 321 (470)
T ss_dssp EECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEEETT
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCEEEEEECC
T ss_conf 86214454889999999997568867734302034777654899852687778999999998558066650369999899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCHH
Q ss_conf 89722049999998999989999999999999999999999999986410789999752000---011000000257757
Q gi|254780353|r 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426 (753)
Q Consensus 350 ~~P~~~~l~eil~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~---~~k~~L~~~f~lse~ 426 (753)
.|+++++++||+.|++||.++++||++|+|+++++|+|+|+|+++++.+||++|.++|+++ .++..|++.|++||.
T Consensus 322 -~pk~~~~~eIL~~f~~~R~~~y~kR~~~~L~k~~~rl~il~~~~~~i~~id~~i~iir~s~~~~~~k~~l~k~~~lse~ 400 (470)
T 3ilw_A 322 -VPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDEI 400 (470)
T ss_dssp -EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTCCHH
T ss_pred -EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHH
T ss_conf -7147379999999999999999999999999999999999759999970277788887158889999987774399999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
Q ss_conf 78899887899998899997666789999887765442039788789999999999874177433455542000
Q gi|254780353|r 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 (753)
Q Consensus 427 QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~l~~iI~~EL~eikkkfgd~~~~~~RRT~ii 500 (753)
||+|||+|||++||++|++++++|+++|++++++|++||+|++.+|+++++||.+++++||+| |||.|+
T Consensus 401 qadyLL~M~L~~LT~ee~~kL~~E~~~l~~ei~~L~~il~~~~~l~~~i~~EL~~l~~k~~~~-----RrT~I~ 469 (470)
T 3ilw_A 401 QAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDD-----RRTRII 469 (470)
T ss_dssp HHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC-----CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC-----CCCCCC
T ss_conf 999998519998716889999999999999999999996899999999999999999982898-----788437